BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor
switch protein [Candidatus Liberibacter asiaticus str. psy62]
(147 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 147
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN
Sbjct: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK
Sbjct: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IAKGEITIMEEDDTHFGVRVIEILNAQ
Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 136
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 114/136 (83%), Gaps = 8/136 (5%)
Query: 20 MHIDNPLQDTNVSSPT---NNSEMLIQ-----KNDVDNISEPISSDSNNILEKSTDNFDL 71
MHID+PLQD + S NNS + +ND+D+ SE ISS+SNNI EKS+DN DL
Sbjct: 1 MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+
Sbjct: 61 IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120
Query: 132 DDTHFGVRVIEILNAQ 147
DDTHFGVRVIE+LN++
Sbjct: 121 DDTHFGVRVIELLNSK 136
>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
Length = 179
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 64/78 (82%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLIM+IP+ +QI+LGS MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT
Sbjct: 98 NLDLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEIT 157
Query: 128 IMEEDDTHFGVRVIEILN 145
++E DDT FG+++IE+ N
Sbjct: 158 VLEHDDTRFGIKLIELSN 175
>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 195
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 67/80 (83%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT
Sbjct: 114 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++ DDT FGV++IE+L+ +
Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193
>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 194
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 67/80 (83%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT
Sbjct: 113 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 172
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++ DDT FGV++IE+L+ +
Sbjct: 173 VLDNDDTRFGVKLIEVLSTK 192
>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
Length = 214
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 69/82 (84%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T NF+LIM+IP+ +QI+LG+ MQ+S+L+NL++G I LDK++GE V+I +N ++IA+GE
Sbjct: 131 TSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 190
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
IT+++ DDT FGV++IE+L+ +
Sbjct: 191 ITVLDNDDTRFGVKLIEVLSTK 212
>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
Length = 195
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 68/82 (82%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GE
Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
IT+++ DDT FGV++IE+L+ +
Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193
>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
Length = 195
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 68/82 (82%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GE
Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
IT+++ DDT FGV++IE+L+ +
Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193
>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
Length = 220
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 65/80 (81%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLIM+IP+ +QI+LGS M +S L+NL +G +I LDK++GE V+I +N ++IA+GEIT
Sbjct: 139 NLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEIT 198
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E DDT FGV++IE+++ +
Sbjct: 199 VLENDDTRFGVKLIEVMSTK 218
>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 195
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 67/80 (83%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT
Sbjct: 114 NFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++ DDT FGV++IE+L+ +
Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193
>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
Length = 178
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 67/80 (83%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT
Sbjct: 97 NFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 156
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++ DDT FGV++IE+L+ +
Sbjct: 157 VLDNDDTRFGVKLIEVLSTK 176
>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
Length = 179
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 67/82 (81%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+DN DLIM+IP+ +QI+LG+ M +S L++L +G I LD+++GE V+I +N ++IA+GE
Sbjct: 96 SDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
IT++E+DDT FGV++IE+++ +
Sbjct: 156 ITVLEDDDTRFGVKLIEVMSTR 177
>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
Length = 179
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 67/82 (81%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
++N ++IM+IP+ +QI+LG+ M +S L++L +G I LD+++GE V+I +N ++IA+GE
Sbjct: 96 SENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
IT++E+DDT FGV++IE+L+ +
Sbjct: 156 ITVLEDDDTRFGVKLIEVLSTR 177
>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 128
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 61/80 (76%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S+ N +IMNIPV +QIILGS M +S+L+ L KG + L++R+GE VD+ +N +KIA+G
Sbjct: 43 SSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARG 102
Query: 125 EITIMEEDDTHFGVRVIEIL 144
EIT++E D + FG+R+ EI+
Sbjct: 103 EITVLESDPSRFGIRLTEII 122
>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
Length = 241
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DL+M IPV +QIILGS M +S+L+ LS+G I LD+++GE V+I +N + I +GEIT++
Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218
Query: 130 EEDDTHFGVRVIEILNA 146
+ DDT F VR+IE++ A
Sbjct: 219 DSDDTKFAVRIIEVIGA 235
>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
Length = 138
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D ++ IPV MQ++LGS M +++L+ L +G VI LD RVGE VDI +N + +A+GEI
Sbjct: 55 NLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIV 114
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+D++ FGV + EI+ A+
Sbjct: 115 VVEDDNSRFGVSLTEIVGAK 134
>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
Length = 215
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 61/76 (80%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLIM+IP+ +QI+LG+ MQ+S+L+NL++G I LD+++GE V+I +N + I +GEIT
Sbjct: 135 NLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 194
Query: 128 IMEEDDTHFGVRVIEI 143
++E D T FGV+++EI
Sbjct: 195 VLEGDVTRFGVKLLEI 210
>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
Length = 128
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +IMNIPV +QIILGS M +S+L+ L KG + L++R+GE VD+ +N +KIA+GEIT
Sbjct: 46 NSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105
Query: 128 IMEEDDTHFGVRVIEIL 144
++E D + FG+R+ EI+
Sbjct: 106 VLESDPSRFGIRLTEII 122
>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
Length = 165
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 62/78 (79%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LIM+IPV++QI+LGS M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+
Sbjct: 87 NPELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVI 146
Query: 128 IMEEDDTHFGVRVIEILN 145
++E+D + FGV + E++
Sbjct: 147 VLEDDPSRFGVSLTEVMG 164
>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
Length = 170
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 70/94 (74%), Gaps = 3/94 (3%)
Query: 55 SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
SS ++ + + + D N +LIM+IPV++Q++LGS M +S L++L +G VITLDK++G+
Sbjct: 76 SSGASKVPQNAGDTSSNTELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDP 135
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+DI +N + IA+GE+ ++E+D + FGV + EI++
Sbjct: 136 IDIVVNGRVIARGEVIVLEDDPSRFGVSLTEIID 169
>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
MAFF303099]
Length = 128
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 60/77 (77%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N ++IMNIPV +QIILGS M +++L+ L KG + L++R+GE VD+ +N +KIA+GEIT
Sbjct: 46 NSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105
Query: 128 IMEEDDTHFGVRVIEIL 144
++E D + FG+R+ EI+
Sbjct: 106 VLESDPSRFGIRLTEII 122
>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
Length = 130
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV +Q++LGS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+
Sbjct: 45 NLDTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVV 104
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+D++ FGV + EI++AQ
Sbjct: 105 VVEDDNSRFGVSLTEIISAQ 124
>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
Length = 198
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE
Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175
Query: 126 ITIMEEDDTHFGVRVIEI 143
IT++E D T FGV+++EI
Sbjct: 176 ITVLEGDVTRFGVKLLEI 193
>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
Length = 210
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 59/76 (77%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GEIT
Sbjct: 130 NMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 189
Query: 128 IMEEDDTHFGVRVIEI 143
++E D T FGV++IEI
Sbjct: 190 VLEGDVTRFGVKLIEI 205
>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
Length = 210
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE
Sbjct: 128 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 187
Query: 126 ITIMEEDDTHFGVRVIEI 143
IT++E D T FGV+++EI
Sbjct: 188 ITVLEGDVTRFGVKLLEI 205
>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
Length = 198
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 60/78 (76%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE
Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175
Query: 126 ITIMEEDDTHFGVRVIEI 143
IT++E D T FGV+++EI
Sbjct: 176 ITVLEGDVTRFGVKLLEI 193
>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 130
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
I+ D N + + D N + D N D I+ IPV +Q++LGS M +SNL+ L +G
Sbjct: 17 IKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVLGSATMLVSNLLKLGRG 76
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI+++Q
Sbjct: 77 AVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIISSQ 124
>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 130
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N D I+ IPV MQ++LGS M +SNL+ L +G ++ LD RVGE VD+ +N + IA+G
Sbjct: 42 SGRNLDSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARG 101
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D++ FGV + EI+
Sbjct: 102 EVVVVEDDNSRFGVSLTEIVG 122
>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
Length = 139
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 66/81 (81%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+++N +L+M+IPV++QI+LGS M ++NL+NL +G VITL+K++G+ +DI +N + IA+G
Sbjct: 58 ASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVNGRIIARG 117
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + E+++
Sbjct: 118 EVIVLEDDSSRFGVSLTEVID 138
>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
16M]
gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
9-941]
gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
2308]
gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
292]
gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
16M]
gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
bv. 1 str. 9-941]
gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Brucella melitensis biovar
Abortus 2308]
gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
Length = 106
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 84
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 85 EVIVLEDDSSRFGVSLTEIIG 105
>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
Length = 77
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 62/75 (82%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ D
Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60
Query: 133 DTHFGVRVIEILNAQ 147
DT FGV++IE+L+ +
Sbjct: 61 DTRFGVKLIEVLSTK 75
>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
870]
gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
Tulya]
gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
86/8/59]
gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M163/99/10]
gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M292/94/1]
gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
Ether]
gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
C68]
gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
Length = 115
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114
>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
Length = 170
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 78/117 (66%), Gaps = 4/117 (3%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
TN S+P+ +E K + +S++ ++ N +LIM+IPV++Q++LGS M
Sbjct: 57 TNPSTPSFGAEAA-GKTTIGGTG---ASNAPKNPSDTSSNTELIMSIPVEVQVVLGSTTM 112
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI++
Sbjct: 113 PVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEIID 169
>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
Length = 115
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114
>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
Length = 124
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV MQ++LGS + ++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+
Sbjct: 40 NVDAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVV 99
Query: 128 IMEEDDTHFGVRVIEILN 145
++EED++ FGV + EI+
Sbjct: 100 VVEEDNSRFGVSLTEIVG 117
>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 109
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV +Q++LGS M +SNL+ L +G VI LD RVGE VDI +N + IA+GE+
Sbjct: 26 NLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIVVNGRVIARGEVV 85
Query: 128 IMEEDDTHFGVRVIEILN 145
++E+D++ FGV + EI+
Sbjct: 86 VVEDDNSRFGVSLTEIVG 103
>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 108
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 23 NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82
Query: 128 IMEEDDTHFGVRVIEILN 145
I+EED++ FGV + E++
Sbjct: 83 IVEEDNSRFGVSLTEVVG 100
>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
BAA-1498]
Length = 170
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 64/81 (79%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ N +LIM+IPV++Q++LGS M ++ L++L +G VITLDK++G+ +DI +N + IA+G
Sbjct: 89 TSSNTELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARG 148
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI++
Sbjct: 149 EVIVLEDDPSRFGVSLTEIID 169
>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
Length = 98
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 17 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 76
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 77 EVIVLEDDSSRFGVSLTEIIG 97
>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
Length = 115
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114
>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
Length = 115
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N +LIM IPV +Q++LG M ++NL+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114
>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
Length = 108
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 23 NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82
Query: 128 IMEEDDTHFGVRVIEILN 145
I+EED++ FGV + E++
Sbjct: 83 IVEEDNSRFGVSLTEVVG 100
>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
Length = 115
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 59/81 (72%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N +LIM IPV +Q++LG M ++NL+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114
>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 125
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D ++ IPV +Q++LGS M ++NL+ L +G ++ LD RVGE VDI +N + IA+GE+
Sbjct: 41 NLDSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVV 100
Query: 128 IMEEDDTHFGVRVIEILN 145
++EED++ FGV + EI+
Sbjct: 101 VVEEDNSRFGVSLTEIVG 118
>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
Length = 171
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 69/91 (75%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ +++N ++ N +LIM+IPV++Q++LGS M ++ L++L +G VITLDK++G+ +DI
Sbjct: 80 AQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDI 139
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N + IA+GE+ ++E+D + FG+ + EI++
Sbjct: 140 VVNGRIIARGEVIVLEDDPSRFGISLTEIID 170
>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
Length = 121
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNL 96
+ K++ + + I + + E++ N D +++IPV++QI+LGS M +S L+ L
Sbjct: 8 VHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMAL 67
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+G ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI
Sbjct: 68 QRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114
>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
Length = 106
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L G VITLDK++G+ VDI +N + IA+G
Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARG 84
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D FGV + EI+
Sbjct: 85 EVIVLEDDSPRFGVSLTEIIG 105
>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
Length = 106
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L G VITLDK++G+ VDI +N + IA+G
Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARG 84
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+D + FGV + EI+
Sbjct: 85 EVIVLEDDSSRFGVSLTEIIG 105
>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
Length = 107
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 55/74 (74%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93
Query: 125 EITIMEEDDTHFGV 138
E+ ++E+D + FGV
Sbjct: 94 EVIVLEDDSSRFGV 107
>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
Length = 110
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 58/80 (72%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ N + I+ IPV +Q++LGS M +S+L+ L +G VI LD RVGE VD+ +N + IA+GE
Sbjct: 25 SRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGE 84
Query: 126 ITIMEEDDTHFGVRVIEILN 145
I ++E+D++ FGV + EI+
Sbjct: 85 IVVVEDDNSRFGVSLTEIVG 104
>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
Length = 120
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+M IPV +Q++LGS M ++NL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++EE
Sbjct: 40 VMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVVEE 99
Query: 132 DDTHFGVRVIEILN 145
D++ FGV + EI+
Sbjct: 100 DNSRFGVTLTEIVG 113
>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
Length = 123
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 59/82 (71%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ + I+ IPV MQ+I+GS M +SNL+ L +G ++ LD+++GE VD+ +N + IA+GE
Sbjct: 36 SRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVDVVVNGRLIARGE 95
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++E+D+T FGV + EI+ +
Sbjct: 96 VVVVEDDNTRFGVSLTEIIEPR 117
>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 132
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 56/78 (71%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N + I+ IPV +Q++LGS M +++L+ L +G VI LD RVGE V++ +N + +A+G +
Sbjct: 47 NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106
Query: 128 IMEEDDTHFGVRVIEILN 145
++E++++ FGV + EI+
Sbjct: 107 VVEDENSRFGVSLTEIVG 124
>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 131
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 56/79 (70%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N + I+ IPV +Q++LGS M +++L+ L +G VI LD RVGE V++ +N + +A+G +
Sbjct: 47 NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E++++ FGV + EI+
Sbjct: 107 VVEDENSRFGVSLTEIVGG 125
>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
Length = 131
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 56/76 (73%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL++++ V MQ++LGS M +S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI
Sbjct: 41 DLDLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIV 100
Query: 128 IMEEDDTHFGVRVIEI 143
++++DD FGV + E+
Sbjct: 101 VLDQDDQQFGVTLTEV 116
>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 140
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 53 PISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
P S++ I E DN +I +PV M+++LGS M ++ L L+KG V+ LDK VG+
Sbjct: 41 PADSEAGGIEEPQIEADNSAMIAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGD 100
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
VDI +N IA+GE+ I+ E + FGV + ++
Sbjct: 101 PVDILVNGHLIARGEVVILNEASSRFGVVLTQV 133
>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 366
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NFDLI+++PV++ + LG I ++NL+ G VI LDK G+ VDI +N + IA+GE+
Sbjct: 283 NFDLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVV 342
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI+N
Sbjct: 343 VIDE---NFGVRITEIVN 357
>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
Length = 120
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Query: 49 NISEPISSDSNNI--LEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+++E ++ + ++ L K D + + ++ IP+ ++++LGS M I + L +G VI L
Sbjct: 16 DVAEEVTRAAASLIGLGKGGDPGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPL 75
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D++VG++VD+ IN + IAKGEI +++E+ + FGV + E+++
Sbjct: 76 DRKVGDAVDVMINGRIIAKGEIVVLDEEGSRFGVTLTEMID 116
>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
Length = 124
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ P+ +D + + D I+ IPV +Q+++GS + +S+L+ L +G VI LD RVG+
Sbjct: 28 APPVDTDKSQL-----RRIDSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGD 82
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ ++EED FGV + EI Q
Sbjct: 83 PVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119
>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 119
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D I N+PV +Q++LG M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+GE+
Sbjct: 37 DELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEV 96
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
I+ DD GV + EI+ A+
Sbjct: 97 VIV--DDGRLGVTMTEIVKAE 115
>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
Length = 378
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N + S +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +
Sbjct: 284 DHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369
>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
Length = 415
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +L+M+IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 331 NNLNLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 390
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 391 VVIDEN---FGVRVTDIVS 406
>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
Length = 125
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + + +IPVK+ ++GS M +S L+ L +G V+ LD+++GE+VDI NN+ IA+G
Sbjct: 41 GSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARG 100
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++ DD H GV + EI+++
Sbjct: 101 EVVVV--DDNHIGVTMTEIISS 120
>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
Length = 129
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 66/102 (64%), Gaps = 7/102 (6%)
Query: 48 DNISEPISSDS----NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
D +SE +++DS +N++ +++ DLI++IPVKM + LG M I L+ LS+G V++
Sbjct: 21 DAMSEQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVS 80
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ GE +DI IN IA+GE+ ++ + FG+R+ +I+
Sbjct: 81 LEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 119
>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
SL003B-26A1]
Length = 136
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I+ IPV +Q++LGS M ++NL+ L +G VI L+ RVGE VDI +N + +A+GE+
Sbjct: 51 NLDTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVV 110
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+D++ FGV + EI++AQ
Sbjct: 111 VVEDDNSRFGVSLTEIISAQ 130
>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 108
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + +IPV++ +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 30 DLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 89
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ GV + EI+ +
Sbjct: 90 VVED---RLGVTMTEIIKS 105
>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
Length = 436
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 352 NNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 411
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 412 VVIDEN---FGVRVTDIVS 427
>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 132
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 14/115 (12%)
Query: 38 SEMLIQKND-------VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
+E L+Q+ D I P++ N S + DLIM+IPVKM + LG M I
Sbjct: 15 AEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVELGRTKMTI 71
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD GE +DI IN IA+GE+ + ++ +GVR+ I+
Sbjct: 72 KELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVADK----YGVRITSIIT 122
>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
[Paenibacillus polymyxa SC2]
gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus polymyxa SC2]
Length = 437
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +N
Sbjct: 344 SGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVN 403
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
N+ IAKGE+ +++E+ FGVRV +I++
Sbjct: 404 NKLIAKGEVVVIDEN---FGVRVTDIVS 428
>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
Length = 171
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 21 HIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75
+D P ++ T +SP + D D +++ ++ + S + + D + + +I
Sbjct: 4 ELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSI 63
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+ + ++LG + +S+L+NLS GD ++LD+R+G+ V+I N IA G++ ++E
Sbjct: 64 PLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGER 123
Query: 136 FGVRVIEILNA 146
FGVR+ ++ A
Sbjct: 124 FGVRLTKLSGA 134
>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
Length = 379
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N + +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +
Sbjct: 285 DPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370
>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
Length = 197
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P + D + + +K +N DLIM++P+++ + LG I +++ + G +I L+K GES
Sbjct: 107 QPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIAGES 164
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VD+ +N + +AKGE+ ++EE+ FGVR+ EI+ Q
Sbjct: 165 VDVLVNGKNVAKGEVVVIEEN---FGVRITEIIKEQ 197
>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
Length = 376
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P+ S ++ E + N L+ ++P+ + + LG + ++ LS+G +I LDK GE V
Sbjct: 281 PLQSPASQ--EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGEPV 338
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
DI +N Q+IA+GE+ ++EE+ FGVRV EI+
Sbjct: 339 DIYVNQQRIARGEVVVIEEN---FGVRVTEIIQ 368
>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
Length = 421
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+++IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 338 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 397
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 398 VIDE---NFGVRVTDIVS 412
>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
Length = 411
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+++IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 328 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 387
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 388 VIDE---NFGVRVTDIVS 402
>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
BEST195]
gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
Length = 378
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N ++ N D++++IP+ + + LG + ++ LS G +I LDK GE VDI +
Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369
>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. SMY]
gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
motor switch protein FliY
gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 378
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N ++ N D++++IP+ + + LG + ++ LS G +I LDK GE VDI +
Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369
>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
Length = 287
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
S ++Q+NDV++++ P +I + N +L++++ V + + LG + I +L++L
Sbjct: 174 TSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSL 232
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
G +ITLDK GE VDI +N + IAKGE+ +++E FGVR+++I+
Sbjct: 233 GSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE---SFGVRILDII 277
>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magneticum AMB-1]
Length = 108
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 24 MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
A+GE+ ++E+ GV + EI+
Sbjct: 84 ARGEVVVVED---RLGVTMTEIIK 104
>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
Length = 419
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+
Sbjct: 335 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 394
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 395 VVIDEN---FGVRVTDIVS 410
>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 108
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 24 MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
A+GE+ ++E+ GV + EI+
Sbjct: 84 ARGEVVVVED---RLGVTMTEII 103
>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
Length = 389
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 15/114 (13%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
SSPT +Q+ N P S ++ N D+++++P+K+ + LG IS
Sbjct: 281 SSPT------VQEAAFSNFESPTLS------KQEHRNLDMLLDVPLKVTVELGRTKQSIS 328
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++++LS G +I LDK GE VDI +N + +A+GE+ ++EE +FGVRV +I++
Sbjct: 329 DILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIEE---NFGVRVTDIIS 379
>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
Length = 134
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K D D +S S + + + N D ++++P+++ + LG M I+ ++ L++G VI
Sbjct: 27 KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LDK GE V+I +N + + KGE+ ++ E FG+RV EI++
Sbjct: 87 LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125
>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
Length = 420
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+
Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 396 VVIDEN---FGVRVTDIVS 411
>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
Length = 420
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+
Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 396 VVIDEN---FGVRVTDIVS 411
>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
Length = 388
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 19 SMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDN 68
SM P+Q+T P T Q ++S+P+ S + E N
Sbjct: 246 SMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARN 305
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+++++IP+ + + LG + ++ LS+G +I LDK GE VDI +NN+ IAKGE+ +
Sbjct: 306 LNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVV 365
Query: 129 MEEDDTHFGVRVIEILN 145
++E +FGVR+ +I++
Sbjct: 366 IDE---NFGVRLTDIVS 379
>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens LL3]
Length = 377
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKG
Sbjct: 291 SRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 350
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++EE +FGVRV +IL+
Sbjct: 351 EVVVIEE---NFGVRVTDILS 368
>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
WK1]
Length = 383
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + + E + N D++++IP+++ + LG + ++++LS G +I LDK GE VDI
Sbjct: 287 SFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDI 346
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+NN+ IAKGE+ +++E+ FGVRV I++
Sbjct: 347 LVNNKLIAKGEVVVIDEN---FGVRVTSIIS 374
>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
Length = 377
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 18 RSMHIDNPLQDTNVSSP------TNNSEMLIQKNDVDNISEPI--------SSDSNNILE 63
++ + P+Q+ +P T E ++ +SEP+ S +
Sbjct: 230 KTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKVSEPVQVAPAEFQSFAPQTEAQ 289
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AK
Sbjct: 290 PHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSIIELDKLAGEPVDILVNQRVVAK 349
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E+ FGVRV +IL+
Sbjct: 350 GEVVVIDEN---FGVRVTDILS 368
>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
Length = 138
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTD---------NFDLI 72
+P+ D+N N S+ I +D+ D +SE S S + + KS D + D+I
Sbjct: 4 SPMSDSN-----NPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMI 58
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ +
Sbjct: 59 MDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD- 117
Query: 133 DTHFGVRVIEILN 145
+GVR+ +I+
Sbjct: 118 --KYGVRITDIIT 128
>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
silvestris StLB046]
Length = 422
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S +S NI + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI
Sbjct: 326 SFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 385
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N++ IAKGE+ +++E+ FGVR+ +IL+
Sbjct: 386 LVNSRLIAKGEVVVIDEN---FGVRITDILS 413
>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
Length = 375
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + IAKGE+ +++E +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366
>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
Length = 408
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + E T N +++++IP+++ + LG + +++ LS G +I LDK GE VDI +
Sbjct: 314 EPQQLQESETKNLNMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILV 373
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N++ IAKGE+ ++EE +FGVRV +I++
Sbjct: 374 NSRLIAKGEVVVIEE---NFGVRVTDIIS 399
>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 375
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + IAKGE+ +++E +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366
>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
Length = 404
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K GE +
Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
DI +N + +AKGE+ ++EE FGVR+ EI+N++
Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397
>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
Length = 404
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K GE +
Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
DI +N + +AKGE+ ++EE FGVR+ EI+N++
Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397
>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 375
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + IAKGE+ +++E +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366
>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
C3-41]
Length = 407
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI
Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N++ IAKGE+ +++E +FGVR+ ++L+
Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398
>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 379
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N + N D++++IP+ + + LG + ++ LS G +I LDK GE VDI +
Sbjct: 285 DPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370
>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
Length = 407
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI
Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N++ IAKGE+ +++E +FGVR+ ++L+
Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398
>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
Length = 437
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 61/93 (65%), Gaps = 5/93 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P ++D N I +K +N +LI ++P+++ + LG I +++ + G ++ L+K GES
Sbjct: 349 QPFATDVNPISQK--ENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGES 406
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
VD+ +N + +AKGE+ ++EE FGVR+ EI+
Sbjct: 407 VDVLVNGKYVAKGEVVVIEE---SFGVRITEII 436
>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 384
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI +IPV++ + LG + +++ + G VI LDK GE VD+ +N + IAKGE+
Sbjct: 300 NIGLIADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVV 359
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV EILN
Sbjct: 360 VIDE---NFGVRVTEILN 374
>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
Length = 144
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--------KSTDNFDLIMNIPVK 78
Q T+ ++ + +M + + +P S S I E + DLI++IPVK
Sbjct: 11 QPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDIDLILDIPVK 70
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +G+
Sbjct: 71 LSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGI 127
Query: 139 RVIEILN 145
R+ +I+
Sbjct: 128 RITDIIT 134
>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 107
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 25 RSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 84
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++E+ GV + EI+
Sbjct: 85 GEVVVVED---RLGVTMTEII 102
>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
Length = 410
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI
Sbjct: 314 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 373
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N++ IAKGE+ +++E +FGVR+ ++L+
Sbjct: 374 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 401
>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 129
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 16/123 (13%)
Query: 32 SSPTNNSEMLIQKNDVDNI-----SEPISSD----SNNILEKSTDNFDLIMNIPVKMQII 82
++PT+ ++ K +DN+ SE ++D N++ +++ DLI++IPVKM +
Sbjct: 4 TTPTSGAD----KQSIDNLWGEAMSEQQTADNMPAKENLVPNFSEDLDLILDIPVKMTVE 59
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I L+ LS+G V++L+ GE +DI IN IA+GE+ ++ + FG+R+ +
Sbjct: 60 LGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITD 116
Query: 143 ILN 145
I+
Sbjct: 117 IIT 119
>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
Length = 109
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + +IPV++ +LG MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 31 DLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 90
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ G+ + EI+ +
Sbjct: 91 VVED---RLGITMTEIIKS 106
>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alkaliphilus oremlandii OhILAs]
Length = 385
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDN 68
KD + R M D P D + ++E +N+ NI P+ + D +++ +N
Sbjct: 247 KDTMHPREMSYDTPNYDHRANF---SNEAAATRNEPVNI-RPVQFQAFDDDSVKGVMPEN 302
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
LI ++P+K+ + LG +IS ++ G +I LDK VGE +DI +N Q +A GE+ +
Sbjct: 303 ISLIQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVV 362
Query: 129 MEEDDTHFGVRVIEILN 145
++E ++G+RV +I+N
Sbjct: 363 IDE---NYGIRVTDIVN 376
>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 115
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 33 RSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 92
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++ D GV + EI+ +
Sbjct: 93 GEVVVV---DDRLGVTMTEIIKS 112
>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
Length = 119
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M +S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 41 DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ A+
Sbjct: 101 LVED---KLGVTMTEIIKAE 117
>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
Length = 141
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S N + I++IP+++ + LG I ++V+L+ G ++ D+ VGE VDIT+N + IA+
Sbjct: 54 QSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIAR 113
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++ E HFGVR+ +I+ Q
Sbjct: 114 GEVVVVGE---HFGVRISQIITPQ 134
>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
Length = 119
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M +S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 41 DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ A+
Sbjct: 101 LVED---KLGVTMTEIIKAE 117
>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
Length = 351
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 62/91 (68%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S D+ ++ T+N +L+++IP+++ + LG + +++ +S+G +I LDK GE VDI
Sbjct: 255 SFDNTDVASSETNNLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDI 314
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
INN+ IA GE+ +++E+ FGVRV ++L+
Sbjct: 315 LINNKLIAVGEVVVIDEN---FGVRVTDVLS 342
>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
Length = 111
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ ++ + + ++PV++ +LG M++S+L++L G V+ LD++VGE++D+ +NN+ IA+
Sbjct: 30 KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++E+ GV + EI+ A
Sbjct: 90 GEVVLVED---KLGVTMTEIIKA 109
>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
Length = 375
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K T N LIM++P+++ + LG I ++++L G VI LDK GE VDI +N + IAK
Sbjct: 288 KDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAK 347
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E+ FGVR+ +I++
Sbjct: 348 GEVVVIDEN---FGVRITDIVS 366
>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
Maree]
gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
Loch Maree]
Length = 386
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 11/99 (11%)
Query: 52 EPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
EP+S I E +T +N DLI+++P+++ ++LG M + +++NL G +I LDK
Sbjct: 288 EPLS-----IRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E V+I +N +K+A GE+ +++E +FGVR+ I+++Q
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDE---NFGVRITSIVSSQ 378
>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
Length = 382
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N + E N LIM++ ++M + LG I ++++ +G +I LDK GE VDI +N+
Sbjct: 291 NGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNH 350
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
+ IAKGE+ +++E+ FGVRV EIL+
Sbjct: 351 KPIAKGEVVVIDEN---FGVRVTEILS 374
>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
Length = 126
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D + +PVKMQ +LG M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+
Sbjct: 49 GLDAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVV 108
Query: 128 IMEEDDTHFGVRVIEILN 145
++ D GV + EI++
Sbjct: 109 LI---DKALGVTLTEIVH 123
>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
Length = 111
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS + +S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI +
Sbjct: 23 DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N++ +A+GE+ ++E+ GV + EI+
Sbjct: 83 NDRLVARGEVVLVED---KLGVTMTEIIK 108
>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
657]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
Length = 401
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++++IP+++ + LG I ++++ ++G +I LDK GE VDI +N + IAKGE+
Sbjct: 318 NLDMLLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVV 377
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV EIL+
Sbjct: 378 VIDE---NFGVRVTEILS 392
>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
065]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
Langeland]
gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
Langeland]
gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
230613]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
Length = 432
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + ++ + T N D++++IP+++ + LG + ++ LS G +I LDK GE VDI
Sbjct: 336 SFEPYHMQDHETKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 395
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+NN+ IA+GE+ +++E+ FGVRV +I++
Sbjct: 396 LVNNRLIAQGEVVVIDEN---FGVRVTDIIS 423
>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
Length = 112
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ P D + + + + ++PV++ +LGS M +S+L+ L+ G V+ LD++VGE
Sbjct: 18 AAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGE 77
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++DI +N++ +A+GE+ ++E+ GV + EI+
Sbjct: 78 AIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 109
>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 3502]
gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
19397]
gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
ATCC 3502]
gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 19397]
gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
Hall]
gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
Okra]
Length = 386
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378
>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
39073]
Length = 395
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ S+ N DLI+++P+ +++ILG+ +I ++++L+ G ++ LD+ V E V IT+N
Sbjct: 304 VYGASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTP 363
Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ I+ E+ FGVR+ IL
Sbjct: 364 IAQGEVVIVNEN---FGVRITHIL 384
>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 111
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 15/119 (12%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
QDTN+ P + E + + + I P +S + + + ++PV++ +LG
Sbjct: 5 QDTNI--PLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+
Sbjct: 53 KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 108
>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
Length = 374
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ + SEP S S N D++M+IP+ + + LG + ++ LS G +I LD
Sbjct: 275 EFEAFSEPQHSTSQ------LGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELD 328
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
K GE VDI +N + +AKGE+ +++E +FGVRV +IL+
Sbjct: 329 KLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365
>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
Length = 133
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
D +SE S S + + KS D + D+IM+IPVK+ + LG M I L+ LS
Sbjct: 19 ADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123
>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
Length = 128
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D ++N+ + +QI+LG M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++
Sbjct: 47 NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106
Query: 128 IMEEDDTHFGVRVIEILN 145
++E+ GV +IEI+
Sbjct: 107 KLDEE--RVGVSLIEIVK 122
>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
Length = 135
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S DS N+ S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI
Sbjct: 39 SFDSGNV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDI 97
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 98 LINGYLIAQGEVVVVND---KYGVRITDIIT 125
>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 116
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT V P NS + DVD E +S + + + + ++PV++ +LG
Sbjct: 5 DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD++VGE++DI +NN+ IA+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114
>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 105
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 27 DLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 86
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ G+ + EI+ +
Sbjct: 87 VVED---RLGITMTEIIKS 102
>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
Length = 390
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 305 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 364
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
++ D +FGVR+ I+++Q
Sbjct: 365 VVV---DENFGVRITNIVSSQ 382
>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
Length = 135
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S DS N+ S + DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI
Sbjct: 39 SFDSANV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDI 97
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 98 LINGYLIAQGEVVVVND---KYGVRITDIIT 125
>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 110
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + ++ + + + +IPV++ +LG MQ+S L+ L +G V+ LD+++GE+V
Sbjct: 15 PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
DI +NN+ +A+GE+ ++ E+ GV + EI+
Sbjct: 75 DIYVNNRLVARGEVVMVGEN--RLGVTMTEIV 104
>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
Length = 175
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG + I L+ L++G VI LD GE +DI IN IA+GE+
Sbjct: 91 DLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVV 150
Query: 128 IMEEDDTHFGVRVIEIL 144
++ D +G+R+ EI+
Sbjct: 151 VV---DDKYGIRITEII 164
>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
Length = 105
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+K+ ++ I +IPV + +LG M I+ L+ L +G V+ LD+++G+ +DI +NN+ IA
Sbjct: 22 DKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVELDRKIGDPIDILVNNRLIA 81
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++ D+T GV + EI+ ++
Sbjct: 82 RGEVVMV--DETRLGVTMTEIVKSE 104
>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
Length = 116
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
KS + + + ++PV + +LG+ M I +L+ L G V+ LD++VGE++DI +NN+ +A+
Sbjct: 35 KSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVAR 94
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++EE GV + EI+ +
Sbjct: 95 GEVVLVEE---RLGVTMTEIVKS 114
>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
Length = 374
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+
Sbjct: 291 NLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVDILVNKRIVAKGEVV 350
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +IL+
Sbjct: 351 VIDE---NFGVRVTDILS 365
>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
Length = 362
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++P+++ + LG +I ++ + G +I L+K GE VDI +N + IA+GE+
Sbjct: 279 SLDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGKLIARGEVV 338
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ D FGVR+ EILN+
Sbjct: 339 VI---DESFGVRITEILNS 354
>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
Length = 164
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T D +M+IP+ +++++G +QI L+NL G V+ LD+ E VDI +N + IAKGE
Sbjct: 71 TKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGE 130
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++ E FGVR+ EI + +
Sbjct: 131 LVVVGE---KFGVRITEIYSEE 149
>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
Length = 132
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA
Sbjct: 47 QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 106
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
+GE+ ++ D+T G+ + EI+ +
Sbjct: 107 RGEVVML--DETKLGITMTEIVKS 128
>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
Length = 376
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 16/127 (12%)
Query: 31 VSSPTNNSEMLIQKN----------DVDNISEPISSDSNNILE--KSTDNFDLIMNIPVK 78
VS PTN + L Q + V N+S P+ +S + E K +N +LI+++P++
Sbjct: 249 VSQPTNKQKTLPQSHTQPPKKEQPQKVYNVS-PVQFESFDEEEERKYPENIELILDVPLE 307
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGV
Sbjct: 308 ITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGV 364
Query: 139 RVIEILN 145
R+ +I+N
Sbjct: 365 RITDIVN 371
>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
Length = 137
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G
Sbjct: 50 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 110 EVVVVAD---KFGVRITDIIT 127
>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 134
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T++ LI++IPVKM + LG M I L++LS+ V+ L+ + GE +DI IN IA+GE
Sbjct: 48 TEDLSLILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGE 107
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +M E +GVR+ +I+
Sbjct: 108 VVVMGE---QYGVRIADIVT 124
>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
Length = 408
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LIM++ ++M + LG I +++ L +G +I LDK GE VDI +N++ IAKGE+
Sbjct: 325 NINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 384
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++E+ FGVRV EIL A
Sbjct: 385 VIDEN---FGVRVTEILPA 400
>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
Length = 117
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+D + L++ N D I++IP+++ + LG M I++L+ L +G V+ L+K GE ++I
Sbjct: 22 ADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEIL 81
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N + IA+GE+ ++ E FGVR+ +I++
Sbjct: 82 VNRKLIARGEVVVVNE---KFGVRLTDIVS 108
>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
Length = 137
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G
Sbjct: 50 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 110 EVVVVAD---KFGVRITDIIT 127
>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 145
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 38 SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+E + K+ V+N ++ I D+ + L + + DLI++IPVK+ + LG M I L+
Sbjct: 29 TENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKMTIKELLR 88
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ +I+
Sbjct: 89 LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDII 134
>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
Length = 412
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E N DL+M+IP+++ + LG I ++ L +G ++ LDK GE VDI +N + IA
Sbjct: 324 ENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDILVNQRLIA 383
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
KGE+ +++E +FGVRV +I++
Sbjct: 384 KGEVVVIDE---NFGVRVTDIVS 403
>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
Length = 410
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S ++ + E +N +++++IP+++ + LG + +++ LS G +I LDK GE VDI
Sbjct: 314 SFETTTVEESEPNNLNMLLDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDI 373
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+NN+ IA+GE+ +++E FGVRV +I++
Sbjct: 374 LVNNKLIAQGEVVVIDES---FGVRVTDIVS 401
>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola sp. JR]
gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola potens JR]
Length = 412
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ DLIM++P+++ + LG I ++NL+ G V+ LDK GE VD+ +N + +AK
Sbjct: 325 KTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAK 384
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E +FG+R+ +I++
Sbjct: 385 GEVVVIDE---NFGIRITDIVS 403
>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
Length = 138
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKM 79
+P TN S +E L Q+ ++ S + D N L + +D D+IM+IPV++
Sbjct: 7 SPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSD-IDMIMDIPVRL 65
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R
Sbjct: 66 SVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIR 122
Query: 140 VIEIL 144
+ +I+
Sbjct: 123 ITDII 127
>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
Length = 124
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE
Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ + FG+R+ +I+
Sbjct: 98 VVVVSD---KFGIRITDIIT 114
>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
Length = 113
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+
Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 95 VIDE---NFGVRITEIIKTK 111
>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 135
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+++ +V N+ E+ K + + I E SS N +K +++ +LI++IP+KM I LG
Sbjct: 11 IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M I +L+ L + ++TLD +GE +DI IN+ +A+GE+ +M+E +G+++++I+
Sbjct: 69 TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125
Query: 146 AQ 147
+
Sbjct: 126 PE 127
>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
Length = 138
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G
Sbjct: 51 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 110
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 111 EVVVVAD---KFGVRITDIIT 128
>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 110
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
EKS + + ++PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN+ +A
Sbjct: 25 EKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVA 84
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++E+ GV + EI+ +
Sbjct: 85 RGEVVVVED---RLGVTMTEIIKTE 106
>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
Length = 106
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA
Sbjct: 21 QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 80
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
+GE+ ++ D+T G+ + EI+ +
Sbjct: 81 RGEVVML--DETKLGITMTEIVKS 102
>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
Length = 113
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+
Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 95 VIDE---NFGVRITEIIKTK 111
>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
Length = 124
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE
Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ + FG+R+ +I+
Sbjct: 98 VVVVSD---KFGIRITDIIT 114
>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 116
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+
Sbjct: 34 RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++E+ GV + EI+ A+
Sbjct: 94 GEVVLVED---KLGVTMTEIIKAE 114
>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
Length = 109
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+KS + + ++PV + +LG M ++ L+ L++G V+ LD++VGE++DI +NN+ +A
Sbjct: 24 DKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVA 83
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++E+ GV + EI+ +
Sbjct: 84 RGEVVVVED---RLGVTMTEIIKTE 105
>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
ictaluri 93-146]
Length = 137
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G
Sbjct: 50 SGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 110 EVVVVND---KFGVRITDIIT 127
>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 116
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
KS + + + ++PV + +LG+ M + +L+ L G V+ LD++VGE++DI +NN+ +A+
Sbjct: 35 KSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVAR 94
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++EE GV + EI+ +
Sbjct: 95 GEVVLVEE---RLGVTMTEIVKS 114
>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 116
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+
Sbjct: 34 RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++E+ GV + EI+ A+
Sbjct: 94 GEVVLVED---KLGVTMTEIIKAE 114
>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
Length = 415
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+++IP+K+ + LG I +++ L +G ++ LDK GE VDI +NN+ IAKGE+
Sbjct: 332 NLNLLLDIPLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVV 391
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 392 VIDEN---FGVRVTDIVS 406
>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 127
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN IA+GE
Sbjct: 41 SDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ + FG+R+ +I+
Sbjct: 101 VVVVSD---KFGIRITDIIT 117
>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
Length = 138
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D N L + +D DLIM+IPV++ + LG M I L++LS+G V++LD GE +DI I
Sbjct: 44 DGQNPLNQFSD-VDLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILI 102
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144
N IA+GE+ ++ + ++G+R+ +I+
Sbjct: 103 NGYLIAQGEVVVVSD---NYGIRITDII 127
>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
Length = 395
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 311 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 370
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+N++
Sbjct: 371 VVDE---NFGVRITSIVNSE 387
>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
824]
gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
[Clostridium acetobutylicum ATCC 824]
Length = 413
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 329 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 388
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I+N++
Sbjct: 389 VVDE---NFGVRITSIVNSE 405
>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
Length = 116
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
D+++ P+ +D E+ T + + + ++PV++ +LG M + L+ L G V
Sbjct: 12 DLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAV 71
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 72 LELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
Length = 396
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ ++M + LG QI ++ + +G +I LDK GE VDI +N++ IAKGE+
Sbjct: 315 NIGLIMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 374
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV EIL+
Sbjct: 375 VIDEN---FGVRVTEILS 389
>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
nematophila ATCC 19061]
gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus nematophila ATCC 19061]
Length = 135
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 51 DIDLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 110
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ +I+
Sbjct: 111 VVSD---KYGIRITDIIT 125
>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
Length = 116
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVV 97
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ A+
Sbjct: 98 LVED---KLGVTMTEIIKAE 114
>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 110
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ + + + ++PV + +LGS M I +L+ L+ G V+ LD++VGE++D+ +NN+ +A+
Sbjct: 30 KTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVAR 89
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++E+ GV + EI+ +
Sbjct: 90 GEVVLVED---RLGVTMTEIVKGE 110
>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
Length = 138
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVK 78
++P TN S +E L Q+ ++ S + D N L + +D +LIM+IPV+
Sbjct: 6 NSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSD-INLIMDIPVR 64
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+
Sbjct: 65 LSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGI 121
Query: 139 RVIEIL 144
R+ +I+
Sbjct: 122 RITDII 127
>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
Length = 154
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144
>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
48]
gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
48]
Length = 110
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ + + ++PV + +LG M +S L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 26 KAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVAR 85
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ +++E GV + EI+ ++
Sbjct: 86 GEVVVVDE---RLGVTMTEIIKSE 106
>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
Length = 154
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144
>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
Length = 188
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++N +E ++D D+IM+IPV++ + LG + I N++ L +G V+ LD GE +DI +N
Sbjct: 93 ADNAIENNSD-IDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVN 151
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ +++E +G+RV +I+
Sbjct: 152 GYLIAQGEVVVVDE---KYGIRVTDII 175
>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. WCH70]
Length = 401
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L++++P+++ + LG + +++LS G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 318 NLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 377
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 378 VIDE---NFGVRVTDIIS 392
>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
Length = 394
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E IQ D +P + N +L+ ++P+++ + LG + ++ LS
Sbjct: 287 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 340
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G +I LDK GE VDI +NN+ IAKGE+ +++E+ FGVR+ +I++
Sbjct: 341 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 385
>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 360
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK
Sbjct: 272 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 331
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E +FGVRV +I+N
Sbjct: 332 GEVVVIDE---NFGVRVTDIIN 350
>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
Length = 393
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E IQ D +P + N +L+ ++P+++ + LG + ++ LS
Sbjct: 286 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 339
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G +I LDK GE VDI +NN+ IAKGE+ +++E+ FGVR+ +I++
Sbjct: 340 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 384
>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
Length = 578
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N + Q N + ++ P +D + E+ DN +++M +P+++ + +G I +++
Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L++G ++ LDK GE D+ +N + IA G+I ++E+ +FG+R+ EILN
Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILN 570
>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
Length = 398
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++++IP+++ + LG I +++ L++G +I LDK GE VDI +N + IAKGE+
Sbjct: 316 NLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVV 375
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 376 VIDE---NFGVRVTDIVS 390
>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
Length = 138
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 38 SEMLIQKNDVDNISEPI----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
+E L Q+ ++ S + S D N L + +D D+IM+IPV++ + LG M I L
Sbjct: 21 AEALEQQKQAESASAGMQNFDSLDGQNPLTQLSD-VDMIMDIPVRLSVELGRTKMTIKKL 79
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I+
Sbjct: 80 LSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127
>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
Length = 154
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E +D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA
Sbjct: 65 EVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 124
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++ D +FGVR+ EI++ +
Sbjct: 125 RGEVVVI---DENFGVRITEIVSPK 146
>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
Length = 114
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + IAKGE+
Sbjct: 36 NFGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVV 95
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 96 VIDE---NFGVRITEIIKIK 112
>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
Length = 113
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+
Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 95 VIDE---NFGVRITEIIKTK 111
>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
Length = 359
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK
Sbjct: 271 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 330
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E +FGVRV +I+N
Sbjct: 331 GEVVVIDE---NFGVRVTDIIN 349
>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
Length = 136
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N D ++++P+++ + LG M I+ L+ L++G V+ LDK G SV+I +N + + KGE
Sbjct: 51 TQNLDFLLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGE 110
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ E FG+RV EI++
Sbjct: 111 VVVVNE---RFGIRVTEIIS 127
>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 93
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE
Sbjct: 7 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ + FG+R+ +I+
Sbjct: 67 VVVVSDK---FGIRITDIIT 83
>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
Length = 163
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 56 DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 153
>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
Length = 116
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ A+
Sbjct: 98 LVED---KLGVTMTEIIKAE 114
>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
Length = 395
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 372 VIDE---NFGVRVTDIIS 386
>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
Length = 113
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+
Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 95 VIDE---NFGVRITEIIKTK 111
>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
Length = 157
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
NN+L + ++ D+I++IPV++ + LG + I NL+ L++G VI LD GE +D+ +N
Sbjct: 64 NNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNG 123
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ ++ E FG+R+ +I+
Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146
>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus bovienii SS-2004]
Length = 135
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+
Sbjct: 51 DIDLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVV 110
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ +I+
Sbjct: 111 VVSD---KYGIRITDIIT 125
>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
Length = 113
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+
Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 95 VIDE---NFGVRITEIIKTK 111
>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
Length = 395
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 372 VIDEN---FGVRVTDIIS 386
>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
Length = 399
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+
Sbjct: 316 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 375
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI++
Sbjct: 376 VIDE---NFGVRITEIVS 390
>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 381
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+
Sbjct: 297 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 356
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVR+I+I++
Sbjct: 357 VVIDEN---FGVRIIDIVH 372
>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
Length = 115
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++DI +NN+ +A+
Sbjct: 34 KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++EE GV + EI+
Sbjct: 94 GEVVLVEE---RLGVTMTEII 111
>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
Length = 366
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNN-------------SEMLIQKND 46
+KK+ ++ + +E + P D T+ S PT+ + +Q D
Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+P S+ IL+ + L+ ++P+ + + LG + + ++ L G +I LDK
Sbjct: 267 FGRTQQP--SEKPQILD---ERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDK 321
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GE VDI +NN+ IA+GE+ +++E +FGVR+ EI+N +
Sbjct: 322 LTGEPVDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359
>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
Length = 111
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+K+ + + ++PV + +LG + ++ L+ L++G V+ LD++VGE++DI +NN+ +A
Sbjct: 26 DKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVA 85
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE+ I++E GV + EI+
Sbjct: 86 RGEVVIVDE---RLGVTMTEIIK 105
>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 397
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I +++L+KG ++ LDK GE+VDI +N + +AKGE+
Sbjct: 314 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVV 373
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI++
Sbjct: 374 VIDE---NFGVRITEIVS 388
>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
Length = 137
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI IN IA+G
Sbjct: 50 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + +GVR+ +I+
Sbjct: 110 EVVVVND---KYGVRITDIIT 127
>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
Length = 136
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+G
Sbjct: 49 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 108
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + +GVR+ +I+
Sbjct: 109 EVVVVND---KYGVRITDIIT 126
>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter italicus Ab9]
Length = 375
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+
Sbjct: 291 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E +FGVR+I+I++
Sbjct: 351 VVIDE---NFGVRIIDIVH 366
>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
Length = 393
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+
Sbjct: 310 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 369
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI++
Sbjct: 370 VIDE---NFGVRITEIVS 384
>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
Length = 395
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+
Sbjct: 312 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 371
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI++
Sbjct: 372 VIDE---NFGVRITEIVS 386
>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 133
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
D ++E S S + + KS D + D+IM+IPVK+ + LG M I L+ LS
Sbjct: 19 ADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123
>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 54 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 114 VVAD---KYGVRITDIIT 128
>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. C56-T3]
Length = 393
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NN+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384
>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+ +
Sbjct: 114 VVAD---KYGVRITDIITS 129
>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+ +
Sbjct: 114 VVAD---KYGVRITDIITS 129
>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA
Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE+ ++ + +GVR+ +I+
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128
>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC61]
gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
Length = 393
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NN+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384
>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
Length = 393
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NN+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384
>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
Length = 385
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++++IP+++ + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+
Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 362 VIDEN---FGVRVTDIIS 376
>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
Length = 385
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++++IP+++ + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+
Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 362 VIDE---NFGVRVTDIIS 376
>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
Length = 133
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + D+IM+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G
Sbjct: 46 SLQDIDMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 105
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + +GVR+ +I+
Sbjct: 106 EVVVVAD---KYGVRITDII 122
>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
Length = 155
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+N N+ +P+ + + + D+IM+IPVK+ + LG + I L+ L++G V+
Sbjct: 50 QNAGQNVFKPLGKSATA---EGMRDLDMIMDIPVKLSVELGRTRITIKQLLELAQGSVVE 106
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD GE +DI IN IA+GE+ ++ D +G+R+ EI+
Sbjct: 107 LDGLAGEPMDILINGYLIAQGEVVVV---DDKYGIRITEIIT 145
>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
family [Ralstonia solanacearum PSI07]
gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum PSI07]
Length = 169
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 45 NDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
ND++++ +P + DS ++ D+I++IPV++ + LG + I NL+ L++G V+
Sbjct: 61 NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
LD GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDII 158
>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
Length = 370
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 6/95 (6%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP+S ++ +S N DLI+++P+++ ++LG I ++++LS G +I LDK E
Sbjct: 274 EPLS---QGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEP 330
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V++ IN +KIA GE+ +++E +FGVR+ I++
Sbjct: 331 VEVLINGKKIAYGEVVVVDE---NFGVRITSIVSG 362
>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
Length = 138
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA
Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE+ ++ + +GVR+ +I+
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128
>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
SL003B-26A1]
gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
SL003B-26A1]
Length = 112
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+
Sbjct: 31 QSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLELDRKVGEAIDIYVNDRLVAR 90
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++E+ GV + EI+
Sbjct: 91 GEVVLVED---KLGVTMTEII 108
>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 139
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 55 DIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 114
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ +I+
Sbjct: 115 VVSD---KYGIRITDIIT 129
>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 375
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S DLI +IPV++ + LG I ++N+S G V+ L++ GE VD+ +N + IA+G
Sbjct: 288 SASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARG 347
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ +++E +FGVRV EI++
Sbjct: 348 EVVVIDE---NFGVRVTEIVS 365
>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
Length = 134
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G
Sbjct: 47 SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 106
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 107 EVVVVND---KFGVRITDIIT 124
>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
Length = 138
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA
Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE+ ++ + +GVR+ +I+
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128
>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
Length = 393
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ N LIM++ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IA
Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
KGE+ ++EE FGVR+ EIL+
Sbjct: 366 KGEVVVIEES---FGVRITEILS 385
>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
Length = 393
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ N LIM++ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IA
Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
KGE+ ++EE FGVR+ EIL+
Sbjct: 366 KGEVVVIEES---FGVRITEILS 385
>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
Length = 136
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G
Sbjct: 49 TAQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 108
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + +GVR+ +I+
Sbjct: 109 EVVVVAD---KYGVRITDIIT 126
>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
Length = 138
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 114 VVAD---KYGVRITDIIT 128
>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
Length = 133
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
D +SE S S + + KS + + D+IM+IPVK+ + LG M I L+ LS
Sbjct: 19 ADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123
>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
Length = 395
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E N D++++IP+++++ LG I ++++++G +I LDK GE VD+ IN++ IA
Sbjct: 307 EAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLINDKLIA 366
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
KGE+ +++E +FGVR+ +I++
Sbjct: 367 KGEVVVIDE---NFGVRITDIVS 386
>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
Length = 408
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ DLI ++P+++ + LG M I +++ L G VI LDK GESVD+ +N + IA
Sbjct: 321 EQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIELDKLAGESVDLLVNGKLIA 380
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
KGE+ +++E +FG RV +I++
Sbjct: 381 KGEVVVIDE---NFGFRVTDIVS 400
>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
Length = 133
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S +SN+I S + DLIM+IPVK+ + LG M I L+ L++G V++L+ GE +DI
Sbjct: 37 SLESNDI-TGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDI 95
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 96 LINGYLIAQGEVVVVAD---KYGVRITDIIT 123
>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 93
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
IM+IPV +Q++LG+ + ++ L NLS+G VI DK+VGE +D+ N + IA+GEI I
Sbjct: 19 IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQIT-- 76
Query: 132 DDTHFGVRVIEILNA 146
DD + + EI+++
Sbjct: 77 DDGRLSISITEIVSS 91
>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
493-89]
gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
H 2687]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G
Sbjct: 50 SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FGVR+ +I+
Sbjct: 110 EVVVVND---KFGVRITDII 126
>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
Length = 396
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I +++L+KG ++ LDK GE VDI +N + +AKGE+
Sbjct: 313 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 372
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ EI++
Sbjct: 373 VIDE---NFGVRITEIVS 387
>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
Length = 136
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI IN IA+GE+
Sbjct: 52 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 112 VVAD---KYGVRITDIIT 126
>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 137
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
Length = 181
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 95 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 154
Query: 128 IMEEDDTHFGVRVIEIL 144
++EE +G+R+ +I+
Sbjct: 155 VVEE---KYGIRLTDII 168
>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
Length = 124
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 40 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+ +
Sbjct: 100 VVAD---KYGVRITDIITS 115
>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 124
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 40 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 100 VVAD---KYGVRITDIIT 114
>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
35469]
gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
fergusonii ATCC 35469]
gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
CGA009]
gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
TIE-1]
gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
Length = 115
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ GV + EI+ A
Sbjct: 98 LVED---KLGVTMTEIIKA 113
>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
Length = 115
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 50 ISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+++PIS++ K + + ++PV +Q ++G M++S L++L +G V+ LD+RV
Sbjct: 18 LAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRV 77
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE++DI +N++ +A+GEI ++ D GV + EI+
Sbjct: 78 GEAIDIYVNSRLVARGEIVVV---DDRLGVTMTEIIK 111
>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
EDL933]
gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4024]
gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14359]
gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
[Escherichia coli O157:H7 str. FRIK966]
gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
enabling rotation and determining its direction
[Escherichia coli O157:H7 str. EDL933]
gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
coli 55989]
gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
coli IAI1]
gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
coli ED1a]
gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. TW14359]
gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
coli W]
gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
74-1112]
gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC1212]
gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
G5101]
gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
LSU-61]
gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1044]
gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1125]
gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
Length = 137
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 124
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 40 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 100 VVAD---KYGVRITDIIT 114
>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
BAA-895]
gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
Length = 401
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
+S H N + NV P +Q N +P S + + N D++++IP+
Sbjct: 282 QSQHFGN---NKNVEQPVQ-----VQPASFTNFEQPSMS------KPESKNLDMLLDIPL 327
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
+ + LG + +++ LS G +I LDK GE VD+ +N++ IAKGE+ +++E +FG
Sbjct: 328 NVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDE---NFG 384
Query: 138 VRVIEILN 145
VR+ +I++
Sbjct: 385 VRITDIVS 392
>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga naphthophila RKU-10]
Length = 346
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ +++E +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338
>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
2457T]
gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. W3110]
gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
coli str. K12 substr. W3110]
gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
Length = 56
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 45/54 (83%)
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54
>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126
>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126
>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 110 VVAD---KYGVRITDIIT 124
>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 127
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
++ +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN IA+GE
Sbjct: 41 SEEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100
Query: 126 ITIMEEDDTHFGVRVIEIL 144
+ ++ + FG+R+ +I+
Sbjct: 101 VVVVSD---KFGIRITDII 116
>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
coli S88]
gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
E2348/69]
gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
[Escherichia coli O127:H6 str. E2348/69]
gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
coli IAI39]
gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
coli UMN026]
gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
NRG 857C]
gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
Length = 114
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+
Sbjct: 36 NFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 95
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ +
Sbjct: 96 VIDE---NFGVRITEIIKIK 112
>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
Length = 137
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
T N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA G
Sbjct: 51 GTPNLDVILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHG 110
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R+ ++++ Q
Sbjct: 111 EVVVVNE---KFGIRLTDVISPQ 130
>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 422
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LIM++P+++ + LG +I ++ L G +I LDK GE VDI +N + IAKGE+
Sbjct: 339 NIELIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVV 398
Query: 128 IMEEDDTHFGVRVIEILN 145
++ D +FG+R+ EI++
Sbjct: 399 VI---DENFGIRITEIIS 413
>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+K V+ +S+P S E N +LIM +P+++ + +G + +++ L+KG ++
Sbjct: 354 KKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLV 413
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
LDK GE VD+ +N Q IA+G++ ++ D +FG+R+ EIL
Sbjct: 414 VLDKLAGEQVDLFVNGQCIAQGDVVVV---DDNFGIRITEIL 452
>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
Length = 346
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ +++E +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338
>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
Length = 97
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
ST DL++++P+++ + LG M I +L+ L+ G VI LDK GE +DI +N + +A+G
Sbjct: 11 STRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E ++ + FGVR+ +I++ Q
Sbjct: 71 EAVVVND---KFGVRITDIVSPQ 90
>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
Length = 376
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N +LIM++P+++ + LG I ++ L G V+ LDK GE VDI +N + IAKG
Sbjct: 290 SDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKG 349
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ +++E +FGVR+ EI++
Sbjct: 350 EVVVIDE---NFGVRITEIVS 367
>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
Length = 372
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ +D + EK +N +LIM+IP+ + + LG I +++ L++G +I LDK GE VD
Sbjct: 278 LDADEQTVSEK--ENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVD 335
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I +N + IAKGE+ +++E +FGVR+++I+
Sbjct: 336 ILVNGKFIAKGEVVVIDE---NFGVRILDIV 363
>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
Length = 416
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 33 SPTNNSEM-LIQKNDVD---NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
SPT + E +Q+ ++ I +P+ S E+ N DLIM++P+ + ++LG +
Sbjct: 294 SPTYHRETPRVQEKPIEVQEAIFQPLQQTSKG--EELPRNIDLIMDVPLDISVVLGRTKL 351
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I ++NL G +I LDK E V+I +N + +A GE+ +++E +FGVR+ +I+N
Sbjct: 352 NIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDE---NFGVRITDIVN 405
>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
Length = 110
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
I +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+
Sbjct: 24 IADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRL 83
Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144
+A+GE+ +++E GV + EI+
Sbjct: 84 VARGEVVVVDE---RLGVTMTEII 104
>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
Length = 346
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ +++E +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338
>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
Length = 344
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D +L++++P+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE+
Sbjct: 259 DKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEV 318
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
++ D +FGVRV EI++ +
Sbjct: 319 VVI---DENFGVRVTEIVSPK 336
>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
Length = 137
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +D+ IN IA+G
Sbjct: 50 AGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQG 109
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FGVR+ +I+
Sbjct: 110 EVVVVND---KFGVRITDIIT 127
>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
Length = 138
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + D+I++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+G
Sbjct: 51 SLQDIDMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQG 110
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + +GVR+ +I+
Sbjct: 111 EVVVVAD---KYGVRITDIIT 128
>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
Length = 144
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 24/137 (17%)
Query: 24 NPLQDTNVSSPTNNSEM------LIQKNDVDNISEPISSDSNNI-----LEKSTDN---- 68
NP + + P S + L ++ND +PI+S + L K+ N
Sbjct: 5 NPTPEGKQAGPGEESSLDDWAAALAEQND-----QPIASGAGGAGVFQPLSKAASNATHN 59
Query: 69 -FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D+I++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 60 DIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 119
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 120 VVND---KFGIRLTDII 133
>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
Length = 378
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCC 87
+ + P +E Q V N+S P+ +S + E + +N +LI+++P+++ + LG
Sbjct: 263 SYTPPPQRTE---QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQ 318
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 319 KLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373
>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
Length = 455
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+ +IP+++ + LG I +++LS G +I LDK GE VDI +NN+ IAKGE+
Sbjct: 372 NLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVV 431
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV +I++
Sbjct: 432 VIDEN---FGVRVTDIIS 446
>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
Length = 117
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ + + + ++PV + +LG +++SNL+ L +G ++ LD++VGE++DI +N++ +A+
Sbjct: 35 RTAQDLEAVFDVPVNVSAVLGKTHIEVSNLLKLGRGAIVELDRKVGEAIDIYVNDRLVAR 94
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++ D GV + EI+
Sbjct: 95 GEVVVV---DDRLGVTMTEIVKG 114
>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
95/1000]
gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
95/1000]
Length = 348
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK
Sbjct: 260 QGTGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 319
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E +FGVRV +I++
Sbjct: 320 GEVVVIDE---NFGVRVTDIIS 338
>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
Length = 377
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+Q + N+ P+ ++ NI LIM++ +++ + LG M I +++ + +G +
Sbjct: 279 VQFQPLQNV--PVGTEQGNI--------GLIMDVYMEVTVELGRTRMIIKDILGMGEGHI 328
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I LDK GE VDI +N++ IAKGE+ +++E+ FGVRV EIL+
Sbjct: 329 IELDKLAGEPVDILVNHKPIAKGEVVVIDEN---FGVRVTEILS 369
>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
Length = 116
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 97
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ A+
Sbjct: 98 LVED---KLGVTMTEIIKAE 114
>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
Length = 137
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
Length = 110
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+K+ + + +PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN+ IA
Sbjct: 25 DKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIA 84
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++ D GV + EI+ +
Sbjct: 85 RGEVVVV---DDRLGVTMTEIIKTE 106
>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
Length = 122
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI++IP+K+ + LG M +S L+NL++G VI L K GE +++ +N++ IA+GE
Sbjct: 39 NLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAV 98
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 99 VVNE---KFGVRLTDIIS 113
>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
GMI1000]
gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
solanacearum GMI1000]
Length = 156
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 49 NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 146
>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
Length = 131
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
N S+P N E I V +S+ I + + + + N D I++IP+K+ + LG +
Sbjct: 11 NQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVM 69
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +L+ L +G V+ LDK GE ++I +N + +AKGE+ ++ E FG+R+ +I++
Sbjct: 70 IKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIIS 122
>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
Length = 136
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+G
Sbjct: 49 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQG 108
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + +GVR+ +I+
Sbjct: 109 EVVVVND---KYGVRITDIIT 126
>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
Length = 137
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVSD---KYGVRITDIMT 127
>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
Alaska E43]
gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
Alaska E43]
gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 383
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+
Sbjct: 300 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 359
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 360 VVDE---NFGVRITSIVS 374
>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
[Clostridium novyi NT]
Length = 396
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 16/141 (11%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNN---SEMLIQKNDVDNISE-PISSDSNNILEKST 66
IK +L ID P + P N+ S++ +Q+ + + + PIS NI
Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNI----- 313
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DLI+++P+++ ++LG I +++L G +I LDK E V+I +N +KIA GE+
Sbjct: 314 ---DLILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEV 370
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR++ I++ +
Sbjct: 371 VVVDE---NFGVRIVSIVSGE 388
>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
Length = 172
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+M++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 86 DIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145
Query: 128 IMEEDDTHFGVRVIEIL 144
++EE +G+R+ +I+
Sbjct: 146 VVEE---KYGIRLTDII 159
>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
Length = 420
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ N ++++IP+++ + LG I ++ L +G +I LDK GE VDI +N + IAKGE
Sbjct: 335 SKNLSMLLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGE 394
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++EE FGVRV +I++ +
Sbjct: 395 VVVIEES---FGVRVTDIVSQE 413
>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter sp. X513]
gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X513]
Length = 375
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+
Sbjct: 291 ENLELILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E+ FGVR+ +I++
Sbjct: 351 VVIDEN---FGVRITDIVH 366
>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 370
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 11/99 (11%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ D+ EP +++ NI +LIM+IP+ + + LG I +++ L++G +I LD
Sbjct: 274 EFDDEDEPTTAEKENI--------NLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELD 325
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
K GE VDI +N + IAKGE+ +++E +FGVR+++I+
Sbjct: 326 KLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIV 361
>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
Length = 375
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370
>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
17B]
gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
Eklund 17B]
Length = 385
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+
Sbjct: 302 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 361
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 362 VVDE---NFGVRITSIVS 376
>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 375
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370
>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
Length = 376
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G
Sbjct: 271 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 329
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 330 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 371
>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 115
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++DI +NN+ +A+
Sbjct: 34 KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ +++E GV + EI+
Sbjct: 94 GEVVLVDE---RLGVTMTEII 111
>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
Length = 343
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +L++++P+K+ + LG M + ++ ++ G +I LDK GE VDI +N + IAKGE
Sbjct: 253 SDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGE 312
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ +++E+ FGVR+ EI+ +
Sbjct: 313 VVVVDEN---FGVRITEIVTPK 331
>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor bescii DSM 6725]
Length = 378
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G
Sbjct: 273 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 331
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 332 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373
>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
SCRI1043]
gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
SCRI1043]
Length = 137
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVSD---KYGVRITDIIT 127
>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
Length = 139
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+E + ++IM+IPVK+ + LG M I L+NL++G V++LD GE +DI IN I
Sbjct: 49 IENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLI 108
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
A+GE+ ++ + +G+R+ +I+
Sbjct: 109 AQGEVVVVSD---KYGIRITDII 128
>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 348
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ +++ + LG M I +++ + +G +I LDK GE VDI +N++ IAKGE+
Sbjct: 266 NIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVV 325
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV EIL+
Sbjct: 326 VIDEN---FGVRVTEILS 340
>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 137
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVSD---KYGVRITDIIT 127
>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
Length = 375
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370
>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
Length = 87
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE
Sbjct: 1 SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ +++E+ FGVR+ EI++ +
Sbjct: 61 VVVIDEN---FGVRITEIVSPK 79
>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CMR15]
Length = 158
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 51 NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 148
>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 377
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ +N +LI+++P+++ + LG + ++ S G +I LDK GE VDI +N + IAK
Sbjct: 294 RYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAK 353
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E FGVR+ +I+N
Sbjct: 354 GEVVVIDE---SFGVRITDIVN 372
>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
Length = 115
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
Query: 51 SEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ PI+ D+ E+ + + + ++PV++ +LG M + L+ L G V+ LD+
Sbjct: 16 APPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDR 75
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 76 KVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112
>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
Length = 376
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E N ++ ++P+ + + LG + +++ L++G +I LDK GE VD+ +NN IA
Sbjct: 289 EGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIA 348
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++EE+ FGVR+ EI+N +
Sbjct: 349 TGEVVVIEEN---FGVRITEIVNTK 370
>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
Length = 116
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+
Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVV 97
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E+ GV + EI+ +
Sbjct: 98 LVED---KLGVTMTEIIKTE 114
>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
Length = 366
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + IAKGE
Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVR+ +I++
Sbjct: 341 VVVIDE---NFGVRITDIVH 357
>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
Length = 97
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
ST D+++++P+++ + LG M I +L+ L+ G VI LDK GE +DI +N + +A+G
Sbjct: 11 STRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E ++ + FGVR+ +I++ Q
Sbjct: 71 EAVVVND---KFGVRITDIVSPQ 90
>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
[Thermoanaerobacter tengcongensis MB4]
Length = 366
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + IAKGE
Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVR+ +I++
Sbjct: 341 VVVIDE---NFGVRITDIVH 357
>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
Length = 136
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ +LIM+IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+
Sbjct: 52 DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + +G+R+ +I+
Sbjct: 112 VVSD---KYGIRITDII 125
>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
australiensis 50-1 BON]
gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
australiensis 50-1 BON]
Length = 366
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 71/108 (65%), Gaps = 7/108 (6%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
SE +++ V + + +++++ +L+ S N +LIM+IP+++ + LG + +++ L
Sbjct: 258 SEKVVKAQPV--VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELG 313
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G VI LD+ GE +DI +N + +A+GE+ +++E +FGVR+IE+++
Sbjct: 314 TGSVIELDRLAGEPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358
>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
Length = 368
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N D++++IP+++ + LG + ++ + G ++ LDK GE VDI IN+Q IA GE
Sbjct: 283 TKNLDMLLDIPLEVTVELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGE 342
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E+ FGVRV +I++
Sbjct: 343 VVVIDEN---FGVRVTDIVS 359
>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
Length = 149
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQI 81
D + D + N + + + +P+S ++N ST N D+I++IPVKM +
Sbjct: 23 DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN----STHNDIDMILDIPVKMTV 78
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 79 ELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 135
Query: 142 EIL 144
+I+
Sbjct: 136 DII 138
>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
Length = 136
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ +LIM+IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+
Sbjct: 52 DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + +G+R+ +I+
Sbjct: 112 VVSD---KYGIRITDII 125
>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 120
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 55 SSDSNN--ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
SSD N +L + + DL++N+P+++ + LG M N++ LS+G VI L++ VGE +
Sbjct: 19 SSDETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPL 78
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I IN + A GE ++ ++ FGVR+ ++N +
Sbjct: 79 TIYINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111
>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
Length = 166
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV+M + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 80 DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 139
Query: 128 IMEEDDTHFGVRVIEIL 144
++ D +G+R+ +I+
Sbjct: 140 VV---DDKYGIRLTDII 153
>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++
Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60
Query: 130 EEDDTHFGVRVIEILN 145
+ +GVR+ +I+
Sbjct: 61 AD---KYGVRITDIIT 73
>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
Length = 137
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ +N S + + + DLIM+IPVK
Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ L+ GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEIL 144
R+ +I+
Sbjct: 121 RITDII 126
>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
Length = 179
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 93 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152
Query: 128 IMEEDDTHFGVRVIEIL 144
++E+ +G+R+ +I+
Sbjct: 153 VVED---KYGIRLTDII 166
>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
Length = 150
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DLIM+IPV + + LGS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 67 GMDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ ++++
Sbjct: 127 VVND---KYGIRLTDVVS 141
>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
Length = 108
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++PV + +LG M +S L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++
Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVV-- 89
Query: 132 DDTHFGVRVIEILNAQ 147
D GV + EI+ ++
Sbjct: 90 -DDRLGVTMTEIIKSE 104
>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
Length = 172
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV+M + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 86 DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145
Query: 128 IMEEDDTHFGVRVIEIL 144
++ D +G+R+ +I+
Sbjct: 146 VV---DDKYGIRLTDII 159
>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 150
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 64/106 (60%), Gaps = 14/106 (13%)
Query: 51 SEPISSDSNNILEKSTD-----------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+EP+++ LE+++ N D+I++IPV + + LG +QI NL+ L++G
Sbjct: 39 AEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNLLQLAQG 98
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GE +D+ +N IA+GE+ ++ + FG+R+ +I++
Sbjct: 99 SVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIIS 141
>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
Length = 137
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN I++GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDIIT 127
>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
Length = 400
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+++ + LG I +++ G VI LDK GE VDI +N + IAKGE+
Sbjct: 321 NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVV 380
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FGVR+ +I++
Sbjct: 381 VIDE---SFGVRITDIIH 395
>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulolyticum H10]
Length = 402
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D ++ EK N LIM++P+++ + LG I +++ G VI LDK GE VDI +
Sbjct: 314 DGLSVTEKK--NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILV 371
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N + IAKGE+ +++E FGVR+ +I++
Sbjct: 372 NGKAIAKGEVVVIDE---SFGVRITDIIH 397
>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
Length = 111
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++PV + +LG M ++ L+ LS G ++ LD++VGE++DI +NN+ +A+GE+ +++E
Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94
Query: 132 DDTHFGVRVIEIL 144
GV + EI+
Sbjct: 95 ---RLGVTMTEII 104
>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Halanaerobium praevalens DSM 2228]
Length = 417
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LI ++P+++ + LG M+I ++++L G +I LDK GE VD+ +N + +AKGE+
Sbjct: 335 NMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVV 394
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FG RV +I++
Sbjct: 395 VIDE---NFGFRVKDIIS 409
>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
BAA-894]
gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
Length = 154
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 70 DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 130 VVAD---KYGVRITDIIT 144
>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
Length = 163
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+ + + LG C M IS L+ L +G +I L K GE +D+ +N + IA+GE+
Sbjct: 80 DLDFILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVV 139
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ E FG+R+ +I++
Sbjct: 140 VVNE---KFGIRLTDIVSP 155
>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 354
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVRV +I++
Sbjct: 328 VVVIDE---NFGVRVTDIVS 344
>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
Length = 114
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I + + ++++LG M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++
Sbjct: 33 SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92
Query: 128 IMEEDDTHFGVRVIEILN 145
++ D GV + EI+
Sbjct: 93 RVQGD--SLGVALREIVK 108
>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
Length = 417
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ N DLI+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA G
Sbjct: 330 APQNIDLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYG 389
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ +++E +FGVR++ I++ +
Sbjct: 390 EVVVVDE---NFGVRIVNIVSGE 409
>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
Length = 226
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++ ++D + EP + N+ ++ N D+IM+IPV + + +G + I +L+ L++G V
Sbjct: 119 AERAELDEL-EPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSV 176
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A
Sbjct: 177 VELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218
>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
Length = 154
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 70 DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 130 VVAD---KYGVRITDIIT 144
>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
Length = 114
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I + + ++++LG M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++
Sbjct: 33 SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92
Query: 128 IMEEDDTHFGVRVIEIL 144
++ D GV + EI+
Sbjct: 93 RVQGD--SLGVALREIV 107
>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
Length = 374
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+NF+LI +P+ + + +G + +++ + G +I LDK+ G+ VDI +N Q IA+GE+
Sbjct: 294 NNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEV 353
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E+ FGVR+ EI+ Q
Sbjct: 354 VVIDEN---FGVRITEIIGKQ 371
>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
Length = 110
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+ +A
Sbjct: 26 DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 85
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ +++E GV + EI+
Sbjct: 86 RGEVVVVDE---RLGVTMTEII 104
>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
Length = 400
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLIM++P+ + ++LG I ++++L+ G +I LDK E V+I +N +KIA GE+
Sbjct: 315 NNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIAYGEV 374
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I++++
Sbjct: 375 VVVDE---NFGVRITSIVSSE 392
>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
Length = 426
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLIM++P+++ + LG I ++ + G ++ L+K GE +D+ +N + +AKGE+
Sbjct: 351 ENIDLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEV 410
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE FGV++ EI+
Sbjct: 411 VVIEES---FGVKITEIV 425
>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
Length = 394
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA GE+
Sbjct: 310 NIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVV 369
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR++ I++ +
Sbjct: 370 VVDE---NFGVRIVNIVSGE 386
>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
Length = 395
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
TDN DL++++ + + + LG + +++ S G V+ LD+ GE VDI +N + IAKGE
Sbjct: 307 TDNLDLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGE 366
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ +++E+ FGVRV +I++ +
Sbjct: 367 VVVIDEN---FGVRVTDIVHPR 385
>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
Full=Flagellar motor switch protein MopA
Length = 106
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 22 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 81
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I+
Sbjct: 82 VVSD---KYGVRITDIIT 96
>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
Length = 114
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+
Sbjct: 36 NLGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVV 95
Query: 128 IMEEDDTHFGVRVIEIL 144
+++E +FGVR+ EI+
Sbjct: 96 VIDE---NFGVRITEII 109
>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
Length = 172
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E SSDS N + S D D+IM+IPV + + +G+ + I NL+ L++G VI LD+ GE
Sbjct: 73 EEFSSDSVNTSKGSPD-LDVIMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEP 131
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 132 LDVLVNGTLIAHGEVVMVND---KFGIRLTDVMS 162
>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 353
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVS 343
>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 353
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVS 343
>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
Length = 101
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+ +A
Sbjct: 17 DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 76
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ +++E GV + EI+
Sbjct: 77 RGEVVVVDE---RLGVTMTEII 95
>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
[Tepidanaerobacter sp. Re1]
gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Tepidanaerobacter sp. Re1]
Length = 376
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 11/95 (11%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP ++ S+++ +LI+++P+++ + LG I ++ +S G +I LDK GE
Sbjct: 285 EPTAAQSSSL--------NLILDVPLEVTVELGRTEKTIKEILEISSGTIIELDKMAGEP 336
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
DI +N + +AKGE+ +++E +FGVR+ EI+N+
Sbjct: 337 ADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368
>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 398
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DLIM++P+ + + LG I ++ L++G +I LDK GE VD+ +N + IAKG
Sbjct: 312 SPQNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKG 371
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ +++E ++G+R+ I++
Sbjct: 372 EVVVIDE---NYGIRITTIIS 389
>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
Length = 412
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +I ++P+++ + LG I+++++ + G +I LDK GE VD+ +N + +AKGE+
Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE FGVRV EI+
Sbjct: 397 VVIEE---SFGVRVTEIV 411
>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
Length = 374
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI++IPV++ + LG I ++ + G V+ L++ GE VD+ +N + +A+GE+
Sbjct: 290 NIDLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVV 349
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FG+RV EI++
Sbjct: 350 VIDE---SFGIRVTEIVS 364
>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
Length = 118
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
EKS + + ++PV + +LG + +++L+ L+ G V+ LD+++GE++DI +NN+ +A
Sbjct: 34 EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ D GV + EI+
Sbjct: 94 RGEVVVV---DDRLGVTMTEII 112
>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
Length = 159
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+
Sbjct: 75 DFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVV 134
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 135 VVND---KFGIRLTDII 148
>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
Length = 151
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ DL+M+IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 66 NDIDLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEV 125
Query: 127 TIMEEDDTHFGVRVIEIL 144
++ E FG+R+ +I+
Sbjct: 126 VVVNE---KFGIRLTDII 140
>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
Length = 401
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+
Sbjct: 317 NIDLILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 376
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 377 VIDE---NFGVRITGIVS 391
>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 112
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 47 VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+D+ S+ + I +K D + I N+PV +Q++LG M ++ L+ L +G V+ L+
Sbjct: 9 LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++V E V++ +N++ +A+GE+ I+E D GV + EI+ +
Sbjct: 69 RKVDEPVEVLVNHRLVARGEVVIVE--DQRLGVTLTEIVRTE 108
>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
Length = 401
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P + + +L+ T+N DL++++P+++ + LG I +++ + G ++ L++ GE
Sbjct: 313 QPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKSIREILDFAPGTIVELNRLAGEP 370
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+D+ +N + +AKGE+ ++EE FG+RV +I+
Sbjct: 371 IDVLVNGKYVAKGEVVVIEE---AFGIRVTDII 400
>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
Length = 154
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+QK D+++ S+S + N D++++IPV + + +G M I NL+ L++G V
Sbjct: 49 VQKASFDSLA----SESRAPATQEDVNLDVVLDIPVTISMEIGRTRMPIRNLLQLNQGSV 104
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 105 VELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDVIS 145
>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Pelagibaca bermudensis
HTCC2601]
gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Roseovarius sp. HTCC2601]
Length = 114
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ D ++N+ + +QI+LG M I+ L+ LS+G +I LDK +G+ V++ IN++ +A+G
Sbjct: 30 GANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARG 89
Query: 125 EITIMEEDDTHFGVRVIEIL 144
++ +E+D GV +IEI+
Sbjct: 90 DLVKLEDD--RLGVSLIEIV 107
>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 396
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+
Sbjct: 313 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 372
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I++++
Sbjct: 373 VIDE---NFGVRIKSIISSE 389
>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
Length = 150
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +P+++D ++ ++ D+I++IPV++ + LG + I NL+ L++G V+ LD G
Sbjct: 50 VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 107
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
E +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 108 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 140
>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
Length = 153
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 42 IQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
++K +V ++S P + +D N+ + N +LI++IPV M + +G + I NL+
Sbjct: 40 VKKEEVASMSGPQAVLEELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQ 97
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A
Sbjct: 98 LNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTDVISA 145
>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
Length = 392
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+
Sbjct: 309 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 368
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I++++
Sbjct: 369 VIDE---NFGVRIKSIISSE 385
>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
Length = 101
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+G
Sbjct: 12 SGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQG 71
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+ +G+R+ +I+
Sbjct: 72 EVVVVED---KYGIRLTDIIT 89
>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
Length = 379
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+N LIM++P+++ + LG I +++ + G +I L++ GE +DI +N + +AK
Sbjct: 301 AGAENIGLIMDVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAK 360
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++EE FGVR+ EI+
Sbjct: 361 GEVVVIEE---SFGVRITEIV 378
>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
Length = 165
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ IN IA+
Sbjct: 77 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQ 136
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ +I+
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155
>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
Length = 388
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ N DLI+++P+++ ++LG I ++ L G +I LDK E V+I +N +KIA G
Sbjct: 301 APQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYG 360
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ +++E +FGVR++ I++ +
Sbjct: 361 EVVVVDE---NFGVRIMNIVSGE 380
>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
Length = 151
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +P+++D ++ ++ D+I++IPV++ + LG + I NL+ L++G V+ LD G
Sbjct: 51 VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 108
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
E +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 109 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 141
>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 356
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE+
Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV +I++
Sbjct: 333 VIDE---NFGVRVTDIVS 347
>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
16/4]
Length = 394
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ +N DLI+++P+ + + LG I ++++ + G +I L+K GE +D+ +N + +AKG
Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++EE FGVR+ EI+
Sbjct: 376 EVVVIEE---SFGVRITEII 392
>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
Length = 142
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Query: 48 DNISE--PISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
DN +E P+ ++ S N L ++ ++ D I++IPV++ + LG + I NL+ L++G V+
Sbjct: 34 DNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVE 93
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 94 LDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 131
>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
Length = 406
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N +++A GE+
Sbjct: 323 NIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVV 382
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ I++++
Sbjct: 383 VVDE---NFGVRITSIISSE 399
>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 103
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T + L+ +IPVKM + +GS + ++ L++L++G V+ LD++ E +D+ +N + IAKGE
Sbjct: 18 TKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANELLDVVVNGKLIAKGE 77
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ + + FGVR++++++
Sbjct: 78 VVTV---NGRFGVRIVDVVS 94
>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
Length = 115
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++PV++ +LG M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 37 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 96
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ GV + EI+ +
Sbjct: 97 LVED---KLGVTMTEIIKS 112
>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
19718]
Length = 157
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N++L + ++ D+I++IPV++ + LG + I NL+ L++G V+ L+ GE +D+ +N
Sbjct: 64 NDVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNG 123
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ ++ E FG+R+ +I+
Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146
>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
Length = 165
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N + IA GE+
Sbjct: 82 NLDVILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVV 141
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++ E FG+R+ ++++ Q
Sbjct: 142 MVNE---KFGIRLTDVVSQQ 158
>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 126
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
SSD+ + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D
Sbjct: 29 FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 88
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 354
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 63/98 (64%), Gaps = 7/98 (7%)
Query: 54 ISSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+++D+ + + +++ N LIM++P+ + + +G ++ +++N + G V+ LDK+
Sbjct: 253 VTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQAD 312
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N Q IA+GE+ ++ D +FGVR+ EI+NA+
Sbjct: 313 APVDIIVNGQLIARGEVVVI---DDNFGVRISEIVNAR 347
>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
Length = 112
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
F L+ +IPV+M + +GS ++++ +++LS+G V+ LD++ + +DI +N IAKGE+
Sbjct: 26 QFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVV 85
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ + +G+R++EI A+
Sbjct: 86 TV---NGRYGIRIVEIAAAE 102
>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii DSM 519]
gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii]
Length = 383
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI ++ +K+ + LG I +++ + G ++ LD+ VGE +DI +N +K+AKGE+
Sbjct: 300 ENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEV 359
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E ++G+R+ +I+ A+
Sbjct: 360 VVIDE---NYGIRITDIIKAE 377
>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
MSMB43]
Length = 130
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S + + ++ DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N
Sbjct: 36 SKAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVN 95
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
IA+GE+ ++ + FG+R+ +I+
Sbjct: 96 GCLIAQGEVVVVND---KFGIRLTDIIT 120
>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
Length = 163
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S ++ ST N D+I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 63 GVFQPLSKAAST----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 118
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152
>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
EO147]
gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
C6786]
Length = 162
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+
Sbjct: 74 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++ + FG+R+ +I+
Sbjct: 134 GEVVVVND---KFGIRLTDII 151
>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
7894]
gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
K96243]
gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
Length = 165
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+
Sbjct: 77 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ +I+
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155
>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
Length = 155
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+G
Sbjct: 68 ALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQG 127
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 128 EVVVVND---KFGIRLTDII 144
>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
Length = 96
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E +D +L+++IP+K+ + LG + ++ G +I LDK GE VDI +N + IA
Sbjct: 7 EVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIA 66
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ +++E+ FGVR+ EI++ +
Sbjct: 67 RGEVVVIDEN---FGVRITEIVSPK 88
>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
B7210]
gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
BCC215]
gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
Length = 162
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+
Sbjct: 74 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ +I+
Sbjct: 134 GEVVVVND---KFGIRLTDIIT 152
>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
DMS010]
gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
DMS010]
Length = 155
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D++M+IPV + + +G + I NL+ LS+G V+ LD+ GE +D+ +N+ IA GE+
Sbjct: 72 DLDMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVV 131
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++A
Sbjct: 132 VVND---KFGIRLTDVISA 147
>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
C54]
Length = 100
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 14 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73
Query: 128 IMEEDDTHFGVRVIEIL 144
++E+ +G+R+ +I+
Sbjct: 74 VVED---KYGIRLTDII 87
>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
Length = 157
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ N L ++ ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N
Sbjct: 63 AKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ ++ + FG+R+ +I+
Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146
>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
[uncultured bacterium]
Length = 117
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + + +PV++ +LG+ +Q+S ++ L +G V+ LD+ VGE VDI NN+ IA+
Sbjct: 35 RSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIAR 94
Query: 124 GEITIMEE 131
GE+ ++E+
Sbjct: 95 GEVVVVED 102
>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
Length = 137
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI N IA+GE+
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126
>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
Length = 143
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+
Sbjct: 55 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 114
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ +I+
Sbjct: 115 GEVVVVND---KFGIRLTDIIT 133
>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
Length = 124
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ P+S + + ST N DLI++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 24 GVFRPLSKATAS----STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 79
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 80 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114
>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
Length = 155
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 11/94 (11%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP+S D N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE
Sbjct: 64 EPVSLDG--------PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEP 115
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 116 LDVLVNGTLIAHGEVVVVNE---KFGIRLTDVIS 146
>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
Length = 365
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----D 67
++ +E + +P+ N + + + ++KN V S + KST D
Sbjct: 222 QEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSFESGGTVKSTGEIPD 281
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+++IP+ + + LG + + ++ LS G +I LDK GE VDI +N + IA+GE+
Sbjct: 282 RIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVV 341
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI+ Q
Sbjct: 342 VIDE---NFGVRITEIVTPQ 358
>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 412
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLIM++P+ + ++LG I +++NL G +I LDK E V+I +N ++IA GE+
Sbjct: 329 NIDLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVV 388
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 389 VVDE---NFGVRITNIVS 403
>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 381
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N L+ ++P+ + + LG I ++ L+ G ++ LDK GE VDI +N +KIA
Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ +++E +FGVRV +I+ A
Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373
>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
Length = 157
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ N L+ + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N
Sbjct: 63 AKNKLQDTQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ ++ + FG+R+ +I+
Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146
>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
DSM 19672]
Length = 289
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DL++++ V + I +GS M + ++V+LS G+++ LD+ E V + +NN+ IAKGE+
Sbjct: 204 NIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKPIAKGEVV 263
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
I+ D +FGVR+ EI++ +
Sbjct: 264 IV---DGYFGVRIKEIISKE 280
>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
Length = 386
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N + ++NIP+++ + LG+ M + +++ L G VI L+K GE++++ IN++ IA+GE+
Sbjct: 304 NIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVV 363
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E +FG+R+ EI++ +
Sbjct: 364 VIDE---NFGIRITEIISPR 380
>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
Length = 381
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N L+ ++P+ + + LG I ++ L+ G ++ LDK GE VDI +N +KIA
Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ +++E +FGVRV +I+ A
Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373
>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
Length = 143
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E + +D N+ + N +LI++IPV M + +G + I NL+ L++G V+ LD+ GE
Sbjct: 46 EELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEP 103
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N IA GE+ ++ E FG+R+ ++++A
Sbjct: 104 LDVLVNGCLIAHGELVVVNEK---FGIRLTDVISA 135
>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
Length = 144
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DL+M+IPV + + LG +QI L+ L++G V+ LD+ GE +D+ +N IA+GE+
Sbjct: 60 NQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEV 119
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I++
Sbjct: 120 VLVND---KFGIRLTDIVS 135
>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
Length = 357
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ L+ +IP+ + + LG + + ++ L G +I LDK GE VDI +NN+ IA+GE+
Sbjct: 273 ERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKLIARGEV 332
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+++E +FGVR+ EI++ +
Sbjct: 333 VVIDE---NFGVRITEIVSPK 350
>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
Length = 392
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKGE+
Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE +G+R+ EI+
Sbjct: 377 VVIEE---SYGIRITEII 391
>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
Length = 144
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DL+M+IPV + + LG +QI L+ L++G V+ LD+ GE +D+ +N IA+GE+
Sbjct: 61 QLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVV 120
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I++
Sbjct: 121 LVND---KFGIRLTDIVS 135
>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
crunogena XCL-2]
gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
XCL-2]
Length = 153
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 49 NISEPISSDSNNILEKSTDN------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
N S+ I + S + LEK + D++++IPV +Q+ +G + I NL++ ++G VI
Sbjct: 45 NNSDEIDAASFDALEKGRGDSSEKVDLDVLLDIPVTLQLEIGRAKVSIRNLLSYTQGSVI 104
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+D+ GE +D+ +N IA GE+ ++ + FGVR+ ++++ Q
Sbjct: 105 EMDRLAGEPLDLLVNGTLIAHGEVVVIND---KFGVRLTDVVSPQ 146
>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
Length = 392
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKGE+
Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE +G+R+ EI+
Sbjct: 377 VVIEE---SYGIRITEII 391
>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
Pf0-1]
Length = 152
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
Length = 150
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPV + + LG + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 67 DLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ ++++
Sbjct: 127 VVND---KYGIRLTDVVS 141
>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
Length = 370
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N LIM++P+++ + LG I +++ S G +I L+K GE++D+ +N + +AKGE+
Sbjct: 295 ENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEV 354
Query: 127 TIMEEDDTHFGVRVIEIL 144
++E+ +FG+R+ EI+
Sbjct: 355 VVIED---NFGIRITEIV 369
>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
642]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
Length = 375
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L+M++ ++M + LG I +++ + +G +I LDK GE VDI +N++ IAKGE+
Sbjct: 292 NIGLLMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVV 351
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVRV EI++
Sbjct: 352 VIDE---NFGVRVTEIVS 366
>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
Length = 472
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN +++M +P+++ + +G + ++++ ++G ++ LDK GE D+ +N + IAKG+I
Sbjct: 389 DNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDI 448
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE +FG+R+ EIL
Sbjct: 449 VVVEE---NFGIRITEIL 463
>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
Length = 155
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 12/105 (11%)
Query: 48 DNISEPISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
DN SE IS+ + + + + ++ D+I++IPV+M + LG + I NL+ L++G
Sbjct: 44 DNTSE-ISATTAGVFQPLSKVAPTTTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQG 102
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 103 SVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144
>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
Max13]
gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
K40]
gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
301020]
gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
B728a]
gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
FF5]
gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
syringae pv. syringae B728a]
gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
1704B]
gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 152
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143
>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
Length = 398
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N + +AKGE+
Sbjct: 315 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 374
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ +I++
Sbjct: 375 VIDE---NFGVRITDIVS 389
>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
Length = 394
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N + +AKGE+
Sbjct: 311 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 370
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FGVR+ +I++
Sbjct: 371 VIDE---NFGVRITDIVS 385
>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
Length = 410
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IAKGE+
Sbjct: 331 NIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAKGEVV 390
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FGVR+ +I++
Sbjct: 391 VIDES---FGVRITDIIH 405
>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
Length = 154
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 NLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145
>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
Length = 112
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
F L+ +IPV+M + +GS ++++ +++L++G V+ LD++ + +DI +N IAKGE+
Sbjct: 27 FRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVT 86
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ + +G+R++EI A+
Sbjct: 87 V---NGRYGIRIVEIAAAE 102
>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 153
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144
>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
Length = 375
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LI ++P+++ + LG M I +++L +G ++ L+K GE VD+ +N + IAKGE+
Sbjct: 293 NMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVV 352
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E +FG RV +I++
Sbjct: 353 VIDE---NFGFRVKDIIS 367
>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
Length = 165
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
ST N D+I++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+
Sbjct: 77 STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ +I+
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155
>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 153
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144
>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 143
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ P+S + + ST N D+I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 43 GVFRPLSKAAAS----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 98
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 99 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 133
>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
Length = 155
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + ST N D+I++IPV+M + LG + I NL+ L++G V+ LD
Sbjct: 55 GVFQPLS----KVAPTSTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGM 110
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 111 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144
>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
Length = 154
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145
>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 162
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQ 80
++P D ++ +E +Q + +P+S + + ST N ++I++IPVKM
Sbjct: 35 EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMT 90
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 91 VELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRL 147
Query: 141 IEIL 144
+I+
Sbjct: 148 TDII 151
>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
Length = 154
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145
>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
Length = 160
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 77 NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 136
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 137 VVNE---KFGIRLTDVIS 151
>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
Length = 161
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 78 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 137
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 138 VVNE---KFGIRLTDVIS 152
>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
Length = 180
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLI++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 96 DIDLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 155
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 156 VVND---KFGIRLTDII 169
>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 368
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ N LIM++P+ + + +G ++ +++N + G V+ LDK+ VDI +N Q IA+GE
Sbjct: 283 SGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGE 342
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ D +FGVR+ EI+N
Sbjct: 343 VVVI---DDNFGVRITEIVN 359
>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
Length = 154
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145
>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
Length = 160
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 77 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 136
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 137 VVNE---KFGIRLTDVIS 151
>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 139
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
T + D I++IP+++ +++G + + L+ L++G V+ LDK GE +++ +N + + +G
Sbjct: 53 KTRDIDFILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRG 112
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R+ +I++ Q
Sbjct: 113 EVVVVNE---KFGIRITDIISPQ 132
>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
Length = 107
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN L+ +IP+++ + +GS ++++ L++L+ G V+ LD++ E +DI +N +AKGE+
Sbjct: 20 DNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEV 79
Query: 127 TIMEEDDTHFGVRVIEILNA 146
+ + FG+RV++I+ A
Sbjct: 80 VTV---NGKFGIRVVDIVAA 96
>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
Length = 153
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144
>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
Length = 164
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
++P D ++ +E +Q + +P+S + + + ++ ++I++IPVKM +
Sbjct: 37 EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTV 93
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 94 ELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 150
Query: 142 EIL 144
+I+
Sbjct: 151 DII 153
>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
SBW25]
Length = 155
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 72 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146
>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
Length = 141
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ N D+I++IPV M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G
Sbjct: 54 APQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQG 113
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 114 EVVVVND---KFGIRLTDII 130
>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
Length = 360
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS + L+ +LI++IP+K+ ++LG I ++ L G ++ LD E V+I
Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N +A+GE+ ++EE+ FGVR+ I+ Q
Sbjct: 319 LVNGVLVARGEVVVVEEN---FGVRITSIVTPQ 348
>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 143
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 59 NLDMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 118
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I+
Sbjct: 119 VV---NDKFGIRLTDIIT 133
>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
Length = 155
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G
Sbjct: 68 TRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 127
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 128 EVVVVND---KFGIRLTDII 144
>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
Length = 193
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 110 NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 169
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 170 VVNE---KFGIRLTDVIS 184
>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
Length = 136
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ + S PI++D D IM+IPV + + +G + I NL+ L++G V+ L
Sbjct: 37 EELKDTSAPITADERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 89
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 DRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
Length = 373
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI ++P+++ + LG I +++ L G V+ LD+ GE VD+ +N + IAK E+
Sbjct: 289 NNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEV 348
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ E FG+R+ EI+N
Sbjct: 349 VVINE---TFGIRITEIIN 364
>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 136
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ + S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 38 ELKDTSSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 90
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 RLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 136
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E + S+ I E D IM+IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 37 EELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGES 96
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 97 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
Length = 368
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+ + + +G ++ +++N S G V+ LDK+ VDI +N Q IA+GE+
Sbjct: 285 NLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVV 344
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++ D +FGVR+ EI+N +
Sbjct: 345 VI---DDNFGVRISEIVNTR 361
>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
Length = 136
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M Q +++++ S PIS D D I++IPV + + +G + I NL+ L++G
Sbjct: 32 MSAQLDELEDTSSPISDDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 85 SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
QYMF]
Length = 393
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N LI ++P+ + + LG +IS ++ G +I L+K VGE +DI +N Q +AKGE+
Sbjct: 310 ENIALIQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEV 369
Query: 127 TIMEEDDTHFGVRVIEIL 144
+++E+ +G+R+ +I+
Sbjct: 370 VVIDEN---YGIRITDIV 384
>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
Length = 169
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILG 84
L D + N + ++ + +P+S + + ST N ++I++IPVKM + LG
Sbjct: 46 LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMTVELG 101
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD GE +D+ +N +A+GE+ ++ + FG+R+ +I+
Sbjct: 102 RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDII 158
Query: 145 N 145
Sbjct: 159 T 159
>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 129
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ +S I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 30 EELTDESTPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
Length = 151
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 51 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 106
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 107 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141
>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
Length = 172
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 72 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 127
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 128 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162
>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
Length = 248
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K + ++ + P +S ++ E+ ++ L+ ++ + + +G + + ++++LS G VI
Sbjct: 142 KKEGESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++
Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240
>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
Length = 287
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S DL++++P+++ + LG + ++ ++ G V+ LD+ GE VD+ +N + IA+G
Sbjct: 201 SRGTLDLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARG 260
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ +++E +FG+R+ +I++
Sbjct: 261 EVVVIDE---NFGIRITDIVS 278
>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
Length = 370
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 70/112 (62%), Gaps = 11/112 (9%)
Query: 42 IQKNDVDNISEPI---SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVN 95
IQKN V ++S P+ S +S I++ +++ +++IP+ + + LG + + ++
Sbjct: 257 IQKNPV-SVS-PVQFQSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVME 314
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
LS G +I LDK GE VDI +N + IA+GE+ +++E +FGVR+ EI++ Q
Sbjct: 315 LSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363
>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
Length = 163
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153
>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 129
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ D+ I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 30 EELTDDTVAITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
Length = 163
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153
>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
Length = 138
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + LG + I NL+ L++G V+ LD+ GE +D+ +N +A GE+
Sbjct: 55 NLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVV 114
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 115 VVNE---RFGIRLTDVVS 129
>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 136
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 46 DVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
DVD I E + S I E D IM+IPV + + +G + I NL+ L++G V
Sbjct: 27 DVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSV 86
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 87 VELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
Length = 149
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ Q +D S + ++ + ++ D+I++IPV++ + LG + I +++ L++G
Sbjct: 37 LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
VI LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIIT 139
>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
Length = 154
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 70 DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 129
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 130 VVND---KFGIRLTDII 143
>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
Length = 111
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 45 NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
ND+D + EP + +++ + N D+I+++PV + + +G + I NL+ L++G
Sbjct: 2 NDIDAL-EPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GES+D+ +N IA GE+ ++ + FGVR+ ++++
Sbjct: 61 VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102
>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
Length = 248
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI
Sbjct: 142 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++
Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240
>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
Length = 136
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ N + PIS D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 38 ELKNTAPPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
Length = 147
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 63 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I+
Sbjct: 123 VV---NDKFGIRLTDIIT 137
>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
Length = 163
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152
>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium saccharolyticum WM1]
Length = 456
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ +N +LIM +P+++ + +G + ++ +KG ++ LDK GE VD+ +N + IA
Sbjct: 373 EEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGEQVDLYVNGRCIA 432
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
KG++ ++ D +FG+R+ EI
Sbjct: 433 KGDVVVV---DDNFGIRITEI 450
>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
Length = 254
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI
Sbjct: 148 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 207
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++
Sbjct: 208 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246
>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
Length = 400
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+ + + LG I +++L G ++ L+K GE VDI +N + IAKGE+
Sbjct: 317 NISLIMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVV 376
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E ++GVRV I++
Sbjct: 377 VIDE---NYGVRVTAIIS 391
>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
Length = 161
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 61 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 116
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 117 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 150
>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
Length = 136
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
Q +++++ S PIS D D I++IPV + + +G + I NL+ L++G V+
Sbjct: 35 QLDELEDTSSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVV 87
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 88 ELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
Length = 153
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 69 DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 128
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 129 VVND---KFGIRLTDII 142
>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
Length = 154
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G
Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143
>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium lentocellum DSM 5427]
Length = 403
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ DVD + S N +N DL+M++ +++ + LG +I ++ G +I
Sbjct: 300 RADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTSRKIKEILEFGPGSIIE 359
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L++ VGE VD+ +N + +A GE+ +++E+ FG+R+ +I+N +
Sbjct: 360 LNRLVGEPVDVLVNGKFVATGEVVVIDEN---FGIRITDIINPE 400
>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
Length = 166
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 66 GVFQPLSKAAPS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 121
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 122 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 155
>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
Length = 136
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 43 SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
S+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 96 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
Length = 152
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 13/121 (10%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NFDLIMNIPVKMQIILG 84
S + + K ++ +EP + + + E +TD N DLI++IPV M + +G
Sbjct: 28 SGSRQGQTAASKAQAESSAEPYAPPT--LEELATDPTAAAKDINLDLILDIPVTMAMEIG 85
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I +L+ L++G V+ L++ GE +D+ +N IA GE+ ++ E FG+R+ +++
Sbjct: 86 RTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLTDVI 142
Query: 145 N 145
+
Sbjct: 143 S 143
>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
Length = 154
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G
Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143
>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
Length = 372
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+L++++P+++++ LGS + + ++ L +G +I L+K GE +DI N + IA+GE+ +
Sbjct: 290 LELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVV 349
Query: 129 MEEDDTHFGVRVIEILNAQ 147
++E +FG+RV EI++ +
Sbjct: 350 IDE---NFGIRVTEIVSLR 365
>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
Length = 114
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+T +L+ + +++ +LG + + L+ L +G VI LD+ GE+VD+ ++ QK +
Sbjct: 22 KATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGR 81
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++ E F VRV+++ Q
Sbjct: 82 GEVMVLNE---RFVVRVLQVFPPQ 102
>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 126
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+
Sbjct: 31 SDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVM 90
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 VNGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
Length = 150
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
DLI++IPV + + +GS + I NL+ L++G VI LD+ GE +++ +N IA GE+ +
Sbjct: 68 LDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVV 127
Query: 129 MEEDDTHFGVRVIEILN 145
+ E FG+R+ ++++
Sbjct: 128 VNE---KFGIRMTDVIS 141
>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
Length = 154
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G
Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+ ++ + FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143
>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
Length = 159
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 59 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 148
>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
Length = 108
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++ NIPV + + +G ++I +L+ L++G V+ LD+ GE +D+ +NN +A+GE+
Sbjct: 26 NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85
Query: 128 IMEEDDTHFGVRVIEIL 144
++ E +GVR+ ++
Sbjct: 86 LVNE---RYGVRLTSVI 99
>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
Length = 136
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 43 SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
S+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 96 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
Length = 159
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD
Sbjct: 59 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 149
>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
Length = 132
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DL++++P+++ + LG + L+ ++ G V+ LD+ GE VD+ +N + IA+GE+
Sbjct: 49 TLDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVV 108
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FG+R+ +I++
Sbjct: 109 VIDEN---FGIRITDIVS 123
>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
Length = 154
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 69 NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128
Query: 127 TIMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 129 VVVND---KFGIRLTDII 143
>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
Length = 152
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+IM+IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 DLDVIMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 129 VVNE---KFGIRMTDVIS 143
>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
2210633]
gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 136
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+
Sbjct: 41 DTSRPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
8052]
gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
8052]
Length = 398
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N ++IA GE+
Sbjct: 315 NIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVV 374
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++E +FG+R+ I+++
Sbjct: 375 VVDE---NFGIRITNIVSS 390
>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
Length = 111
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Query: 45 NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
ND+D + EP + + + N D+I+++PV + + +G + I NL+ L++G
Sbjct: 2 NDIDAL-EPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GES+D+ +N IA GE+ ++ + FGVR+ ++++
Sbjct: 61 VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102
>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
Length = 109
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G M I NL+ L++G VI L++ GE +D+ +N IA GE+
Sbjct: 26 NLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVV 85
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FGVR+ ++++
Sbjct: 86 VIND---RFGVRLTDVVS 100
>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
Length = 144
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S D+I++IPV + + +G + ISNL+ L++G VI LD+ GE +D+ +N IA G
Sbjct: 58 SDPKLDVILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHG 117
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ + +G+R+ ++++ Q
Sbjct: 118 EVVVVND---RYGIRLTDVISPQ 137
>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
Length = 128
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D + ++ V++ LGS M+I +++ L G V+ LD+ GE V++TIN IA+GE+
Sbjct: 43 GIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVV 102
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E F VR+ EI++ +
Sbjct: 103 VVDE---KFAVRITEIVSPE 119
>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
Length = 129
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 36 STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
S+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
Length = 157
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148
>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
phosphatase fliY) (Flagellar motor switch protein fliY)
[NC10 bacterium 'Dutch sediment']
Length = 324
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ D+++++ +++ + LG +QI +++ L G ++ LDK+ G++VDI +N++ IAKGE+
Sbjct: 240 NGIDMLLDVNLQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEV 299
Query: 127 TIMEEDDTHFGVRVIEI 143
I++E+ FGVR+ I
Sbjct: 300 IIIDEN---FGVRLTSI 313
>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
Length = 157
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148
>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
Length = 157
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148
>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
Length = 398
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+
Sbjct: 319 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 378
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FGVR+ +IL+
Sbjct: 379 VIDES---FGVRITDILH 393
>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
27405]
gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
27405]
Length = 406
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+
Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FGVR+ +IL+
Sbjct: 387 VIDES---FGVRITDILH 401
>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
Length = 111
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
N P++ DS N + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 15 NQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 68
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
G+ +D+ +N +A GE+ ++ + FGVR+ +I+
Sbjct: 69 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 101
>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 1313]
Length = 406
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+
Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E FGVR+ +IL+
Sbjct: 387 VIDES---FGVRITDILH 401
>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
baltica WH47]
Length = 141
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S N L ++ + DL+ + + ++I LG M++ ++ L G V+ LDK G+ VDI +N
Sbjct: 54 SPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVN 113
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ IA+GE+ +M + +F VRV E++ A
Sbjct: 114 GRLIARGEVLVMND---NFCVRVTELVGA 139
>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 155
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 72 NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146
>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
Length = 155
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 72 NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146
>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
Length = 151
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+++I + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N
Sbjct: 57 ADDIKTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 116
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
IA+GE+ ++ + FG+R+ +I+
Sbjct: 117 GCLIAQGEVVVVND---KFGIRLTDII 140
>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+++ + + PIS D D IM+IPV + + +G + I NL+ L++G V+ L
Sbjct: 37 DELKDTTSPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
Length = 138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 40 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129
>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
Length = 151
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 68 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 127
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 128 VVNE---KFGIRLTDVIS 142
>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+
Sbjct: 41 DTSSPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 38 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
Length = 299
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DL+++I V + + +GS M + +++ + G++I LD+ E V++ INN+ IA+G
Sbjct: 212 SPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARG 271
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ I+ D +FG R+ EI++
Sbjct: 272 EVVIV---DGYFGFRIKEIVS 289
>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+++ + S PI+ D D IM+IPV + + +G + I NL+ L++G V+ L
Sbjct: 37 DELKDTSPPITEDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
Length = 95
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ N ++ N+ +++ + LG M + L+ L+ GDVI LD+ VD+ +N +AK
Sbjct: 6 ETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAK 65
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++ D FGVR++EI+++
Sbjct: 66 GEVVVV---DDEFGVRILEIISS 85
>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
Length = 106
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E ++ DLI++IPV + + +G M I NL+ L++G ++ LD+ G+ +D+ +N +A
Sbjct: 18 EADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLDVLVNGTLVA 77
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FGVR+ +I++
Sbjct: 78 HGEVVVVND---KFGVRLTDIVS 97
>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
Length = 409
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN DL+M+IP+ + ++LG+ + +++ + G VI L+K E +DI +N + IA+GE+
Sbjct: 325 DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEV 384
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ + +FGVR+ IL+
Sbjct: 385 VVIND---NFGVRITNILS 400
>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
Length = 119
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IP+ + + LG M+I +L+ L +G V+ L K GE ++I +N + A+GE+ +
Sbjct: 37 LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ E FGVR+ +I++ Q
Sbjct: 97 VNE---KFGVRLTDIVSPQ 112
>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
Length = 111
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 59/92 (64%), Gaps = 9/92 (9%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P+S +NN F L+ +IPV+M + +GS ++++ +++L++G ++ LD++ +
Sbjct: 15 DPVSKMTNN------RQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADDL 68
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +N IAKGE+ + + +G+R+++I
Sbjct: 69 LDIMVNGALIAKGEVVTV---NGRYGIRIVDI 97
>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 122
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ K + +PVK+ + L S + + +L + +GDVI LD+ VGE++DI +N +
Sbjct: 34 IRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALL 93
Query: 122 AKGEITIMEEDDTHFGVRVIEI 143
KGE+ E +GVR++E+
Sbjct: 94 GKGEVV---EVGGRYGVRLLEV 112
>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
Length = 153
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM+IPV + + LG+ + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 70 DLDLIMDIPVVLSMELGNTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVV 129
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ ++++
Sbjct: 130 VVND---KYGIRLTDVVS 144
>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 136
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M Q +++ + PIS D D I++IPV + + +G + I NL+ L++G
Sbjct: 32 MAAQLDELQDTGSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 85 SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
Length = 147
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 64 DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 123
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 124 VVNE---KFGIRMTDVIS 138
>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
Length = 360
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+
Sbjct: 273 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 332
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++ E FG+R+ IL+ +
Sbjct: 333 GEVVVINE---SFGIRITNILSKE 353
>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
Length = 419
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
Q +N P+ S+ +N L+M++P+++ + +GS +I +++ S+G +I
Sbjct: 316 QLAQFENFEAPLGSEQK-------ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTII 368
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+++ G VD+ +N IA+G++ ++ D +F VR+ EI+ ++
Sbjct: 369 ELERQAGAPVDVMVNGNLIARGDVVVI---DDNFAVRITEIVKSK 410
>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
Length = 152
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 67 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146
>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Epulopiscium sp. 'N.t. morphotype B']
Length = 408
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
++ +N D+++++ +++ + LG +I +++ S+G +I LDK VGE +DI +N +
Sbjct: 322 VVPTGAENIDILLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKF 381
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA GE+ +++E+ FGVR+ I+ +
Sbjct: 382 IASGEVVVIDEN---FGVRIKSIIKPE 405
>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
degradans 2-40]
gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
Length = 135
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 52 DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 111
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 112 VVNE---KFGIRMTDVIS 126
>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
Length = 150
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV++ + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 67 DLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 126
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 127 VVNE---KFGIRMTDVIS 141
>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
Length = 141
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
+ +PV ++ LG M + ++ L +G VI LD+ GE +DI + +++ A+GE+ ++ E
Sbjct: 63 LTLPVSIE--LGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE- 119
Query: 133 DTHFGVRVIEIL 144
HFGVR+ +L
Sbjct: 120 --HFGVRITRVL 129
>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
Length = 145
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N I
Sbjct: 55 MSETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 114
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
A+GE+ ++ + FG+R+ +I+
Sbjct: 115 AQGEVVVVND---KFGIRLTDIIT 135
>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
Length = 133
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I EP +SN + D+I++IPV + + +G + I NL+ L++G VI LD+ G
Sbjct: 39 IPEPGKRNSN-------PDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAG 91
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 92 EPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 125
>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 156
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 18/124 (14%)
Query: 32 SSPTNNS----EMLIQKNDVDNISEPISSDSNNILEKSTD------NFDLIMNIPVKMQI 81
+SPT S + +I + +D + P + DS L+ D N D+I+++PV + +
Sbjct: 32 ASPTRRSLPGLQQMINSDTLD--ASPATFDS---LQAEQDQNAADLNLDVILDVPVTLSL 86
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+
Sbjct: 87 EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143
Query: 142 EILN 145
++++
Sbjct: 144 DVVS 147
>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 136
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+
Sbjct: 41 DTSSPITDDERR-------KLDSIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
Length = 359
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+
Sbjct: 272 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 331
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++ E FG+R+ IL+ +
Sbjct: 332 GEVVVINE---SFGIRITNILSKE 352
>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
Length = 139
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++M++PV + + +G + I +L+ L++G ++ LD+ GE +D+ +N IA+GE+
Sbjct: 56 NLEVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVV 115
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 116 VINE---KFGIRLTDVIS 130
>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 128
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ DS + + D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 29 EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119
>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
Length = 101
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 49 NISEPISSDSNN---ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
I+ P +SDS + + E DL++++ V++ + LGSC + + ++ LS G ++ L
Sbjct: 2 TITTP-ASDSGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLA 60
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+R + V + +N++ +A GE+ ++EE +FG+++ EI+ Q
Sbjct: 61 QRATDPVGLFVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99
>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 136
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GES+
Sbjct: 45 PISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESL 97
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 98 DVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
Length = 124
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N + +++IP+++ + +GS M I L+ L +G VI L+K GE +++ +NN+ +A+
Sbjct: 37 PANKNIEFVLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVAR 96
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++ E FG+R+ +++
Sbjct: 97 GEVVVVNE---KFGIRLTDVV 114
>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
Length = 113
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+++ D I++IP+ + + LG M +++L+ L +G ++ L+K GE +++ IN + IA
Sbjct: 24 QQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLAGEPLEVYINRKLIA 83
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ E FGVR+ +I+
Sbjct: 84 RGEVVVVNE---KFGVRLTDII 102
>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
Length = 127
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
++ S + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D
Sbjct: 30 LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 89
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
6578]
Length = 350
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L+M++ +++ + LG + ++ + +G +I LDK GE VDI +N++ IA+GE+
Sbjct: 267 NISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGEVV 326
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FGVRV EI++
Sbjct: 327 VIDEN---FGVRVTEIIS 341
>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 347
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+ P + +++ NI + + + + + +LI++IP+K++++LG I
Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+++ G +I LD+ V E V++ +N +AKGEI ++ E+ FG+++ +IL+ +
Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGEN---FGIKINQILSPK 341
>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
Length = 411
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI++IP+K+ +ILG I +++ ++ G V+ LD E VDI +N +A GE+
Sbjct: 325 NLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVV 384
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E +FG+R+ I++
Sbjct: 385 VVNE---NFGIRITNIIS 399
>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
Length = 147
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+ +
Sbjct: 64 LDMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVV 123
Query: 129 MEEDDTHFGVRVIEIL 144
+ + FG+R+ +I+
Sbjct: 124 VND---KFGIRLTDII 136
>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 125
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 46 DVDNISEPISSDSNNILE---KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
D + + EP + + +++ ++ + + ++PV + +LG + +++L+ L+ G V+
Sbjct: 21 DPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAVLGKAHVDVNSLLRLTSGSVL 80
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
LD++VGE++DI +N++ +A+GE+ ++ D GV + EI+
Sbjct: 81 ELDRKVGEAIDIYVNSRLVARGEVVVV---DDRLGVTMTEII 119
>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
Length = 127
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
FD IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 45 FDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVV 104
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 105 VND---KFGIRLTDVIS 118
>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
Length = 148
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 53 PISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
P ++ ++ EK + ++ D+I++IPV++ + LG M I NL+ L++G V+ L
Sbjct: 41 PPAAGKAHVFEKFGAAGSAATPNDLDMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVEL 100
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GE +D+ IN IA+GE+ ++ + G+R+ +I
Sbjct: 101 SGMAGEPLDVMINGFLIAQGEVVVVND---KLGIRLTDI 136
>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
Length = 126
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 32 DSRPITKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 91
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 NGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 125
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++ ++ N S P+S D D IM+IPV + + +G + I NL+ L++G V
Sbjct: 23 VEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSV 75
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 76 VELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 116
>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
Length = 174
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I +L+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 91 NIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVV 150
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 151 VVNE---RFGIRLTDVIS 165
>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
Length = 143
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N I ++P+ + + LG +IS ++ G +I ++K VGE VDI +N Q +AKGE+
Sbjct: 60 ENISTIQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEV 119
Query: 127 TIMEEDDTHFGVRVIEI 143
+++E ++G R+ EI
Sbjct: 120 VVIDE---NYGTRITEI 133
>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 129
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ ++ I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 30 EELTDETVPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
Length = 137
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 53 DIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 112
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I++
Sbjct: 113 VVND---KFGIRLTDIIS 127
>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
Length = 158
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133
Query: 128 IMEEDDTHFGVRVIEILN 145
+ E FG+R+ ++++
Sbjct: 134 AVNE---KFGIRLTDVIS 148
>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
Length = 109
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 16/109 (14%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N +E L Q N P++ D N + +LI++IPV + + +G M I NL+
Sbjct: 7 NTTEQLNQGN-------PLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQ 53
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
L++G ++ LD+ G+ +D+ +N +A GE+ ++ + FGVR+ +I+
Sbjct: 54 LNQGGIVALDRLAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 99
>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
Length = 136
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 46 DVDNI-SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
DVD I + P+ N S D D IM+IPV + + +G + I NL+ L++G V
Sbjct: 27 DVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSV 86
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 87 VELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
flin/mopa/spao family. [Cupriavidus taiwanensis LMG
19424]
gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
19424]
Length = 148
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 64 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 123
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I+
Sbjct: 124 VVND---KFGIRLTDIIT 138
>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
Length = 139
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 62 LEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
L+ T N D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N
Sbjct: 48 LKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCL 107
Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
IA+GE+ ++ + FG+R+ +I+
Sbjct: 108 IAQGEVVVVND---KFGIRLTDIIT 129
>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 105
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I+++PV++ + LG M+IS L+ L DV+ L++ VGE VD+ +N++ +A+GE+ ++
Sbjct: 20 ILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVVV-- 77
Query: 132 DDTHFGVRVIEIL 144
D G+ ++E++
Sbjct: 78 -DGRLGLTIVELM 89
>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
Length = 112
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+M++PV + + +G M I L+ L+ G V+T D+ V E +D+ +N +A+GE+
Sbjct: 28 DLDLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVV 87
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
E FG+R++++++ +
Sbjct: 88 SAE---GQFGLRLVDVVSPK 104
>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
Length = 188
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+++ LGS + I+ L+ L +G VI L+K GE ++I +N + +A+GE
Sbjct: 105 DLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAV 164
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 165 VINE---KFGVRLTDIIS 179
>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
Length = 124
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T +F I ++P++++ LG M + +++L G VI LDK GE VD+ +N+ +AKGE
Sbjct: 41 TADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGE 100
Query: 126 ITIMEEDDTHFGVRV 140
+ ++ + FGVR+
Sbjct: 101 VVVI---NDAFGVRI 112
>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
Length = 352
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 33 SPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKST----DNFDLIMNIPVKMQIILGSC 86
+P + + K + + S+P+ S + L S DN DLI+++P+ + ++LG
Sbjct: 228 TPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVLGRS 287
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+ IL+
Sbjct: 288 KKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNILS 343
>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
Length = 142
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 58 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 117
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I+
Sbjct: 118 VVND---KFGIRLTDIIT 132
>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
Length = 172
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 88 DLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 148 MVNE---KFGIRLTDVIS 162
>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC2047]
Length = 132
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D+I++IPV + + +G+ + I NL+ L+KG VI LD+ GE +D+ +N IA GE+ +
Sbjct: 50 LDVILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVV 109
Query: 129 MEEDDTHFGVRVIEILN 145
+ E FG+R+ ++++
Sbjct: 110 VNE---KFGIRLTDVVS 123
>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
Length = 149
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 65 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 124
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ +I+
Sbjct: 125 VVND---KFGIRLTDIIT 139
>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
Length = 98
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
Length = 109
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
N P++ D N + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 13 NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 67 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100
>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 115
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E S +S + K + +PV++ + L S M + L + +GDV+ LD+ VGE
Sbjct: 17 EFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEP 76
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +N + +GE+ E + +GVR++E+
Sbjct: 77 LDIRVNGALLGRGEVV---EVNGRYGVRLLEV 105
>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
Length = 109
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
N P++ D N + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 13 NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 67 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100
>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
profundum SS9]
Length = 129
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 36 STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
Length = 203
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++PV + + +G + I NL+ L++G V+ LD+ GE++D+ +N IA GE+
Sbjct: 120 NLQMVLDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVV 179
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 180 VVNE---KFGIRLTDVIS 194
>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
Length = 141
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 58 SNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
S L+ T N D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +
Sbjct: 46 SGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLV 105
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144
N IA+GE+ ++ + FG+R+ +I+
Sbjct: 106 NGCLIAQGEVVVVND---KFGIRLTDII 130
>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
Length = 98
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T+ + NI V+M I +G + IS L+ L++G V+ L++ GE +DI +N KIAKGE
Sbjct: 14 TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++ E FG+R EI++ +
Sbjct: 74 VVMVGE---RFGIRFSEIVDPE 92
>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
Length = 98
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
Length = 98
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
Length = 99
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ +A+GE
Sbjct: 16 NLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVARGEAV 75
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+++I++
Sbjct: 76 VVNE---KFGVRLVDIVS 90
>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
Length = 352
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN DLI+++P+ + ++LG I ++++ + G VI L+K E ++I +N + IA GE+
Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ E +FGVR+ IL+
Sbjct: 328 VVINE---NFGVRITNILS 343
>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
Length = 153
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ ++ +LI++IPV++ + LG + I N++ L++G V+ LD GE +D+ +N IA+
Sbjct: 63 QPGNDINLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQ 122
Query: 124 GEITIMEEDDTHFGVRVIEIL 144
GE+ ++ + FG+R+ +I+
Sbjct: 123 GEVVVVND---KFGIRLTDIV 140
>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
Length = 127
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 33 DSRPITKEEAAKLDSILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
Length = 190
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DL+M+IP+++ + +GS + + ++ L+ +++ LDK + + VD+ +N + IAKGE+
Sbjct: 102 EKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGEL 161
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+E+ HFG+++ I+ Q
Sbjct: 162 YTVED---HFGIKITSIITVQ 179
>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
Length = 124
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 30 DSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 89
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 NGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
Length = 99
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ N + I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ +A
Sbjct: 11 EQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVA 70
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE ++ E FGVR+++I++
Sbjct: 71 RGEAVVVNE---KFGVRLVDIVS 90
>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris str. B100]
gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris]
Length = 112
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 63 EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ +TD N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N I
Sbjct: 23 QDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLI 82
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
A GE+ ++ + FG+R+ ++++
Sbjct: 83 AHGEVVVIND---RFGIRLTDVVS 103
>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
Length = 137
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
++++D+ P ++ L K N +L+M++P+++ + LGS QI +L+ L+KG ++
Sbjct: 33 RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+K + ++I +N++ +A GE+ ++++ G+R+ +I++ +
Sbjct: 90 LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130
>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
Length = 352
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN DLI+++P+ + ++LG I ++++ + G VI L+K E ++I +N + IA GE+
Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ E +FGVR+ IL+
Sbjct: 328 VVINE---NFGVRITNILS 343
>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
400]
Length = 127
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 33 DSRPITKEEAAKLDGILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
Length = 414
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++
Sbjct: 328 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 387
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
++ D +F VR+ EI+ ++
Sbjct: 388 VVI---DDNFAVRITEIVKSK 405
>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
Length = 135
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ D+I++IPVK+ + LG M I NL+ L++G V+ L GE +D+ IN IA+G
Sbjct: 48 AHNDLDMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQG 107
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + G+R+ +I+
Sbjct: 108 EVVVVND---KLGIRLTDIIT 125
>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
Length = 127
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 33 DSQPISKADAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
Length = 112
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 65 STD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+TD N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA
Sbjct: 25 ATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAH 84
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ ++++
Sbjct: 85 GEVVVIND---RFGIRLTDVVS 103
>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
Length = 172
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 88 DLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 148 MVNE---KFGIRLTDVIS 162
>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
Length = 124
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +
Sbjct: 30 DSQPISKAEAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 89
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 NGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
Length = 125
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
DS ++ EK + IP+++++++G +++ L++L G V+ LD V VDI
Sbjct: 34 GDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPVDIL 89
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+N + +AKGEI ++E+ FGVR+ +I+
Sbjct: 90 VNGKLVAKGEIVVVEDK---FGVRITDII 115
>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
Length = 142
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 37/45 (82%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
T NF++IM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE
Sbjct: 97 TSNFEMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 141
>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 162
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 38 SEMLIQKNDVDNISE-----PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCM 88
+E L+++ D + P+S D+ D + +++++IPV++ + LG +
Sbjct: 38 AEALLEQKSSDGAGDAAPGGPLSGDTPKPFTSGGDGHVNDINMVLDIPVQLSVELGRTKV 97
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 98 PIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 150
>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
Length = 102
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
TD + NI V+M + +G + IS L+ L++G V+ LD+ GE +DI +N IAKGE
Sbjct: 18 TDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGEPLDILVNGTLIAKGE 77
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
I ++ E FG+R +I++ +
Sbjct: 78 IVMVGE---RFGIRFSDIVDPE 96
>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
Length = 156
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++
Sbjct: 75 MILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVN 134
Query: 131 EDDTHFGVRVIEILN 145
+ FG+R+ +I+
Sbjct: 135 D---KFGIRLTDIIT 146
>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
Length = 246
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
PL+ ++V + E L+ D + P +S + ++ +++ + +++ + +G
Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRR--GIEMLHGVDMEVTVEIG 183
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M + L++L+ G V+ LD+ G D+ +N + IA+GE+ +++ED FG+R+ EI+
Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240
Query: 145 N 145
Sbjct: 241 T 241
>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
Length = 118
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
D SE S +N K +NF +PV++ + L S M + L + +GDVI LD+
Sbjct: 17 DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
VGE +DI +N + +GE+ E +GVR++EI
Sbjct: 75 VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107
>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
BAC17H8]
Length = 110
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D+ S +N L+ NI V + + +G ++I +L+ L++G VI LD+ G+ +DI
Sbjct: 17 DAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILA 76
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
N IAKGE+ ++ E FG+R EI++
Sbjct: 77 NGTMIAKGEVVMVGE---RFGIRFTEIVD 102
>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 112
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 89 VVND---RFGIRLTDVVS 103
>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 112
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVS 103
>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
Length = 112
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVS 103
>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
Length = 148
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 63 EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
E ++D N ++++++PV + + +G + I NL+ L++G V+ LD+ GE +D+ +N I
Sbjct: 59 EPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLI 118
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A GE+ ++ E FG+R+ ++++
Sbjct: 119 AHGEVVVVNE---KFGIRLTDVISP 140
>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
Length = 118
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
D SE S +N K +NF +PV++ + L S M + L + +GDVI LD+
Sbjct: 17 DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
VGE +DI +N + +GE+ E +GVR++EI
Sbjct: 75 VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107
>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
Length = 112
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVS 103
>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 112
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVS 103
>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
Length = 144
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + + ++ V++ LG+ MQI +++ L G V+ L++ GE VDI +N IA+GE+
Sbjct: 62 SIEFLRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVV 121
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++E F VRV+EI+ +
Sbjct: 122 VVDEK---FAVRVVEIVPPE 138
>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 416
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N DLI ++ +++ + LG I+ +++ G V+ LDK VGES+DI N +KIA GE+
Sbjct: 333 ENMDLIKDVMLQITVELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEV 392
Query: 127 TIMEEDDTHFGVRVIEIL 144
+++E ++G+R+ +I+
Sbjct: 393 VVIDE---NYGIRITDIV 407
>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
Length = 129
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA
Sbjct: 41 EEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 100
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ ++++
Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120
>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
Length = 249
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DL+ ++ + + + LG M + +L+ L+ G V+ LD+ G D+ +N Q IA+GE+
Sbjct: 170 TMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVV 229
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+++ED + +R+ EI+ +
Sbjct: 230 VVDED---YAIRITEIVTPE 246
>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
Length = 139
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 20 MHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKS---TDNFDLI 72
M ID P +D ++ + +E L+++ + +EP ++ D+++ S + + +
Sbjct: 1 MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 58 LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116
Query: 133 DTHFGVRVIEILN 145
FG+R+ +++
Sbjct: 117 --KFGIRLTDVVT 127
>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
Length = 131
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E +S+ I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 32 EELSNQPAEITQEEKRKLDTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAGEP 91
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 LDVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 122
>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
HTCC2083]
gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
HTCC2083]
Length = 99
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D + NI V+M I +G + I+NL+ L++G V+ LD+ GE +DI +N IAKGE+
Sbjct: 16 DKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEV 75
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
++ E FG+R +I++ +
Sbjct: 76 VMVGE---RFGIRFSDIVDPE 93
>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
Length = 132
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
++ D I++IPV + + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE
Sbjct: 46 ANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGE 105
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ + FGVR+ +I+
Sbjct: 106 VVVVND---KFGVRLTDIIT 122
>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
Length = 131
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ D I D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 32 EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122
>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
[Xanthomonas albilineans GPE PC73]
gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
flin [Xanthomonas albilineans]
Length = 112
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 49 NISEPISSDS---NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
N +EP +S + E + N D+I+++P+ + + +G + I NL+ L++G V+ L+
Sbjct: 7 NQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELE 66
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GE +D+ +N IA GE+ + + FGVR+ ++++
Sbjct: 67 RGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVS 103
>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
Length = 82
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++
Sbjct: 1 DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60
Query: 130 EEDDTHFGVRVIEILN 145
E FG+R+ ++++
Sbjct: 61 NE---KFGIRLTDVIS 73
>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
Length = 101
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE
Sbjct: 18 NLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+++I++
Sbjct: 78 VVND---KFGIRLLDIVS 92
>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
Length = 101
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE
Sbjct: 18 NLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+++I++
Sbjct: 78 VVND---KFGIRLLDIVS 92
>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
Length = 103
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 63/98 (64%), Gaps = 7/98 (7%)
Query: 50 ISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
++E I SD NN LE N + I++IP+++ + LG + + +++ L++G V+ L K
Sbjct: 2 VNEKIDSDELNNNSLE--VKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKL 59
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N++ +A+GE ++ + FG+R+++I++
Sbjct: 60 AGEPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVS 94
>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 103
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++D + K F+ +++I V LG+ + I L+ L KG VI L+K GESV++
Sbjct: 3 AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
INN+ KGE+ + E+ + +R+ EIL+++
Sbjct: 63 YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92
>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
Length = 132
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + ++N+ +++ I+LG M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++
Sbjct: 51 SIEAMLNVGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLV 110
Query: 128 IMEEDDTHFGVRVIEIL 144
+ D GV + EI+
Sbjct: 111 RV--GDNRVGVTLTEIV 125
>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
HP15]
Length = 163
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 79 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 138
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 139 MVNE---KFGIRLTDVIS 153
>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E++ + D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A
Sbjct: 93 EQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVA 152
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE ++ E FG+R+ +I++
Sbjct: 153 RGEAVVINE---KFGIRLTDIIS 172
>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
Length = 417
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + IAK E+
Sbjct: 330 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEV 389
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ E FG+R+ +I+
Sbjct: 390 VVINET---FGIRITDIVQ 405
>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
Length = 111
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
DV + + +D + + NFDL+ + +++ + +GS M ++ L+ L +G VI L
Sbjct: 2 TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
D+ + +DI N IAKGEI + D +G++V E++
Sbjct: 62 DRAATDLLDIYANGTLIAKGEIVSV---DGRYGIQVAEVV 98
>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
Length = 212
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
EK+T +L+ ++ + ++I LG M + +++ L +G V+TLDK G+ VDI +N + IA
Sbjct: 130 EKAT--LELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIA 187
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
+GE+ ++ + +F VRV E+L+
Sbjct: 188 RGEVLVLND---NFCVRVAELLSG 208
>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 127
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA
Sbjct: 39 EEDVAKLDSIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 98
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ ++++
Sbjct: 99 HGEVVVVND---KFGIRLTDVIS 118
>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
Length = 166
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 82 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 142 MVNE---KFGIRLTDVIS 156
>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
Length = 133
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+
Sbjct: 38 TDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 97
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 98 VNGTLIAHGEVVVVND---KFGIRLTDVIS 124
>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
hydrocarbonoclasticus]
Length = 166
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 82 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ ++++
Sbjct: 142 MVNE---KFGIRLTDVIS 156
>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
Length = 127
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E S+D N + D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 28 EDFSNDDNAFSPEQQHKLDSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAGEP 87
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 88 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
LFI1238]
Length = 127
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 11/92 (11%)
Query: 62 LEKSTDNF--------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
LE++T F D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D
Sbjct: 30 LEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLD 89
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 421
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + +AK E+
Sbjct: 334 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEV 393
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ E FG+R+ +I+
Sbjct: 394 VVINET---FGIRITDIVQ 409
>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 145
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +++ +N IA+GE+ +
Sbjct: 62 LDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVV 121
Query: 129 MEEDDTHFGVRVIEIL 144
+ + FG+R+ +I+
Sbjct: 122 VND---KFGIRLTDIV 134
>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 118
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N + +
Sbjct: 32 KPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGR 91
Query: 124 GEITIMEEDDTHFGVRVIEI 143
GE+ E + +GVR++E+
Sbjct: 92 GEVV---EVNGRYGVRLLEV 108
>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 129
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ +
Sbjct: 47 LDAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVV 106
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 107 VND---KFGIRLTDVIS 120
>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
Length = 187
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
++ D+ E + + D I++IP+ + LG + I+ L+ L +G VI L+K GE ++
Sbjct: 90 LTEDAKKKPEGTKRDLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPME 149
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N + +A+GE ++ E FG+R+ +I++
Sbjct: 150 VLVNGKLVARGEAVVINE---KFGIRLTDIIS 178
>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
Length = 446
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DL+M + + + + +G +I ++++ +G VI L+K+ G VDI +N + +A+G
Sbjct: 356 SNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARG 415
Query: 125 EITIMEEDDTHFGVRVIEILN 145
++ ++ D +FGVR+ EI+
Sbjct: 416 DVVVI---DDNFGVRITEIVG 433
>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
'5-way CG']
Length = 125
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +A+
Sbjct: 39 EPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVAR 98
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + +GVR+ +I++
Sbjct: 99 GEVVMVND---KYGVRLTDIVS 117
>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
Length = 124
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+PIS + D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 31 SQPIS-------KAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 84 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
Length = 138
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 40 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ ES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129
>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
Length = 101
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E T N + I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A
Sbjct: 13 ELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVA 72
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE ++ E FG+R+++I++
Sbjct: 73 RGEAVVVNE---KFGIRLVDIVS 92
>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 118
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N + +
Sbjct: 32 KPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGR 91
Query: 124 GEITIMEEDDTHFGVRVIEI 143
GE+ E + +GVR++E+
Sbjct: 92 GEVV---EVNGRYGVRLLEV 108
>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 118
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + K + +PV + + L S M + L + +GDV+ LD+ VGE +DI
Sbjct: 24 SHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIR 83
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
+N + +GE+ E + +GVR++E+
Sbjct: 84 VNGALLGRGEVV---EVNGRYGVRLLEV 108
>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
Length = 127
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 45 LDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVV 104
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 105 VND---KFGIRLTDVIS 118
>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 135
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+
Sbjct: 40 TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126
>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +A+GE+
Sbjct: 201 ESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEV 260
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ + +GVR+ +I++
Sbjct: 261 VMVND---KYGVRLTDIVS 276
>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
Length = 202
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE
Sbjct: 119 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 178
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 179 VINE---KFGVRLTDIIS 193
>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
Length = 136
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD
Sbjct: 38 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ ES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
Length = 129
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA
Sbjct: 41 EDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIA 100
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ ++++
Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120
>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
Length = 292
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S N DL++++ + + + +GS M + +++ L G +I L++ E V++ +NN+ IA+G
Sbjct: 205 SGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIELEEYADEPVELLVNNKVIARG 264
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ D +FG+R+ EI++
Sbjct: 265 EVVVV---DGYFGLRIQEIVS 282
>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
Length = 124
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++P+SS+ D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 31 TKPLSSEE-------AAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 84 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
Length = 186
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE
Sbjct: 103 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 162
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 163 VINE---KFGVRLTDIIS 177
>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
Length = 390
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LI++IP+K+ ++LG I +++ ++ G V+ LD E V+I +N +A GE+
Sbjct: 306 NLELILDIPLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVV 365
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E +FGVR+ I++
Sbjct: 366 VVNE---NFGVRITNIIS 380
>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
Length = 144
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S ++ ++I++IPV++ + LG + I +++ L++G V+ LD GE +D+ +N IA+G
Sbjct: 56 SGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 115
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FG+R+ +I+
Sbjct: 116 EVVVVND---KFGIRLTDIVT 133
>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
Length = 135
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+
Sbjct: 40 TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126
>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
Length = 100
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE
Sbjct: 17 NLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDVFVNSKLVARGEAV 76
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+++I++
Sbjct: 77 VI---NDKFGIRLVDIVS 91
>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
Length = 250
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G +
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
Length = 190
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE
Sbjct: 107 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 166
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 167 VINE---KFGVRLTDIIS 181
>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
Length = 185
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ +
Sbjct: 103 LDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVM 162
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 163 V---NDKFGIRLTDVIS 176
>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 330
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++I + + I +GS + + +L+ L G ++ LDK+ G+ V++ +N + IA+GE+
Sbjct: 246 NIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKVIARGEVV 305
Query: 128 IMEEDDTHFGVRVIEILN 145
++ D +FG+R+ EIL+
Sbjct: 306 VI---DANFGLRINEILS 320
>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 94
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN + + ++ V++ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N +++ + E+
Sbjct: 15 DNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEV 74
Query: 127 TIMEEDDTHFGVRVIEIL 144
++E+ H V + E+L
Sbjct: 75 VVVED---HLAVTITEVL 89
>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 250
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G +
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 112
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 55 SSDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
++S I E+ S +N ++ NI V + + +GS ++I +L+ L++G VI LD+ G+ +D
Sbjct: 16 GAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLD 75
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I N IAKGE+ ++ E FG+R EI+ +
Sbjct: 76 ILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106
>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
Length = 104
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
EM + K ++ +++ + S +N+L N D++ ++ +KMQ+ LG +Q+ L+ + +
Sbjct: 5 EMSVSKAELKTLTQELLS-GDNLL---AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G V+ LD+ +DI IN + +A+G + ++++D FGV++ EI
Sbjct: 61 GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEI 102
>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
ND132]
Length = 183
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE
Sbjct: 100 DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 159
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ +I++
Sbjct: 160 VINE---KFGIRLTDIIS 174
>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
Length = 126
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ +++ + LG M++ ++ L +G VI LDK +GE+V++ +N Q+ A+GE+ ++ +
Sbjct: 47 DVQIEISVELGQTVMKVREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVI---N 103
Query: 134 THFGVRVIEILNAQ 147
FGVR+ I Q
Sbjct: 104 DSFGVRITSINRVQ 117
>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
STEC_7v]
Length = 123
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+DV +++P +D+ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 16 DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 250
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G +
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
Length = 126
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 43 NLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVV 102
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 103 VIND---KFGIRLTDVIS 117
>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
Length = 250
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G +
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
Length = 130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 DVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 121
>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
Length = 129
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 38 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 90
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 91 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
Length = 174
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE
Sbjct: 91 DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 150
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FG+R+ +I++
Sbjct: 151 VINE---KFGIRLTDIIS 165
>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121
>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
Length = 229
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + D I++IP+ + LG M I+ L+ L G V+ L K GE ++I +N + +A+G
Sbjct: 143 SRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARG 202
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E ++ E FG+R+ +I++
Sbjct: 203 EAVVINE---KFGIRLTDIIS 220
>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
KN400]
Length = 101
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N + I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE
Sbjct: 18 NLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAV 77
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+++I++
Sbjct: 78 VVNE---KFGVRLVDIVS 92
>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 129
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+++ P+ DS + D I++IPV + + +G + I NL+ L++G V+ LD
Sbjct: 29 ELEQFDAPMGGDS-----EQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 83
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ GE +D+ +N +A GE+ ++ + FG+R+ ++++
Sbjct: 84 RVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120
>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
Length = 130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121
>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 133
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + + SKG ++
Sbjct: 25 DVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++ + E ++I +N IA GEI ++EE +G+R+ I N+
Sbjct: 85 ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125
>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 148
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E ++ +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA
Sbjct: 58 EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ + FG+R+ +++
Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136
>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
Length = 422
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DLI++IP+K+ +ILG I +++ L+ G V+ L V E V++ +N +A GE+
Sbjct: 338 RLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVV 397
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++ E+ FGVR+ I+ +
Sbjct: 398 VVNEN---FGVRITSIIGPE 414
>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
Length = 154
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
Query: 55 SSDSNNIL----EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ DS N L E + ++N+ + +QI+LG M IS L+ L++G ++ L++++G
Sbjct: 57 TEDSRNALAPRPEAGGAGINAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGA 116
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
VD+ ++++ +A+G++ + ED GV + +I+
Sbjct: 117 PVDLMVSDRLVARGDLVKVGED--RLGVSLTQIV 148
>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 121
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 30 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 82
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 83 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112
>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
Length = 129
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ST + D IM+IPV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA
Sbjct: 42 ESTVSIDSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAH 101
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++ + FG+R+ ++++
Sbjct: 102 GEVVVVND---KFGIRLTDVIS 120
>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
Length = 103
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+++IP+++ + +GS M I +L+ L +G +I LDK GE +D+ +N++ IA+GE +
Sbjct: 21 LGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVM 80
Query: 129 MEEDDTHFGVRVIEILNA 146
+++ +G+R+ ++++
Sbjct: 81 VKD---RYGLRLTDVVSP 95
>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
Length = 144
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 42 IQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
++ D+ + P++ D+ + + + +++++IPV++ + LG + I ++ L++G
Sbjct: 32 VEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGS 91
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 92 VVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 132
>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
Length = 164
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A
Sbjct: 76 EGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVA 135
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE ++ E FGVR+ +I++
Sbjct: 136 RGEAVVINE---KFGVRLTDIIS 155
>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 126
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
L+ ++ +++ + LG + ++ + G V+ LDK GE+VD+ +N Q +A+GE+ +
Sbjct: 46 LGLLADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVV 105
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ E+ +G+R+ E++N +
Sbjct: 106 IGEN---YGIRITELINPE 121
>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
Length = 148
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E ++ +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA
Sbjct: 58 EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ + FG+R+ +++
Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136
>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
Length = 124
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N + +PV++ + L S M + L + +GDVI LD+ VGE +DI +N + +
Sbjct: 37 RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 96
Query: 124 GEITIMEEDDTHFGVRVIEI 143
GE+ E +GVR++EI
Sbjct: 97 GEVV---EVAGRYGVRLLEI 113
>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
Length = 142
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ ++I++IPV++ + LG + I +++ L++G V+ LD GE +D+ +N IA+G
Sbjct: 53 AGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 112
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++ + FG+R+ +I+
Sbjct: 113 EVVVVND---KFGIRLTDIVT 130
>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
(strain APS)
gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 133
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + + SKG ++
Sbjct: 25 DVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++ + E ++I +N IA GEI ++EE +G+R+ I N+
Sbjct: 85 ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125
>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
Length = 128
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N + +PV++ + L S M + L + +GDVI LD+ VGE +DI +N + +
Sbjct: 41 RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 100
Query: 124 GEITIMEEDDTHFGVRVIEI 143
GE+ E +GVR++EI
Sbjct: 101 GEVV---EVAGRYGVRLLEI 117
>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
Length = 130
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++PV++ + +G M + + L G ++ L++ GE VD+ +N IA GE+ +++E
Sbjct: 29 LSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVIDE 88
Query: 132 DDTHFGVRVIEILNA 146
+ FG+R+ ++L A
Sbjct: 89 E---FGLRITDVLGA 100
>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
Length = 151
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+ + E+ D I++IPV + + +G + I NL+ L++G V+ L++ GE +D+
Sbjct: 56 SEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVL 115
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 116 VNGTLIAHGEVVVVND---KFGIRLTDVIS 142
>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
BC]
gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
BC]
Length = 151
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 53 PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
P+S + D + +++++IPV++ + LG + I ++ L++G V+ LD
Sbjct: 47 PLSGEPARAFAGGGDAPAQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140
>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
Length = 116
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+
Sbjct: 33 DLDLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 92
Query: 128 IMEEDDTHFGVRVIEILN 145
E FG+R+I++++
Sbjct: 93 ---ESAGQFGLRLIDVVS 107
>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
Length = 151
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 53 PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
P+S + D + +++++IPV++ + LG + I ++ L++G V+ LD
Sbjct: 47 PLSGEPARAFAGGGDAPVQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140
>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
Length = 102
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S+ N +++ NIPV + + +G ++I +L+ L +G V+ L++ GE +D+ +NN +A+
Sbjct: 16 ESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQ 75
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ ++ E +GVR+ ++ ++
Sbjct: 76 GEVVLVNE---RYGVRLTNVIPSE 96
>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 138
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+S+ +++ + D I++IPV + + +G + I NL+ L++G V+ L++ GES+D+
Sbjct: 42 TSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERLAGESLDV 101
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 102 LVNGTLIAHGEVVVVND---KFGIRLTDVIS 129
>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
ferrodiazotrophum]
Length = 125
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D ++++P+ + + +G M I +L+ L +G V+ LDK GE +++ IN+Q +A+G++
Sbjct: 43 SLDYLLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVV 102
Query: 128 IMEEDDTHFGVRVIEILN 145
++ + +G+R+ +I++
Sbjct: 103 LV---NDKYGIRLTDIVS 117
>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
Length = 132
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S + + I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D
Sbjct: 35 LSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLD 94
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 95 VLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123
>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
Length = 119
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I P D LE +N+ ++++ V + LGS + +S ++ KG +I L K G
Sbjct: 11 IQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAG 70
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ESV+I IN + I KGE+ + E++ +RV EIL++
Sbjct: 71 ESVEIFINGRIIGKGEVMVYEKN---LAIRVNEILDS 104
>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
T6c]
Length = 131
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 49 LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 109 V---NDKFGIRLTDVIS 122
>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
SS3/4]
Length = 445
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS S N E + N +++M +P+++ + +G + +++ ++G ++ LDK GE D+
Sbjct: 352 SSGSENGEESA--NQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADL 409
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N Q +A+G+I ++E+ +FG+R+ +I+
Sbjct: 410 YVNGQCVARGDIVVVED---NFGIRITDIVT 437
>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 131
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 49 LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 109 VND---KFGIRLTDVIS 122
>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 111
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DL+ ++ V + + LGS + + L+ L G ++TLD+++ + VD+ +N + +A+ EI
Sbjct: 35 RLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIV 94
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ D FG+R++EI+ +
Sbjct: 95 AV---DDRFGIRIVEIVEER 111
>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
Length = 119
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I P D LE +N+ ++++ V LGS + + ++ KG +I L K G
Sbjct: 11 IQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDLQKPAG 70
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ESV+I IN + + KGE+ + E++ +RV EIL++
Sbjct: 71 ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEILDS 104
>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
Length = 117
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+
Sbjct: 34 DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93
Query: 128 IMEEDDTHFGVRVIEILN 145
E FG+R+I++++
Sbjct: 94 ---ESAGQFGLRLIDVVS 108
>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
Length = 249
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+ ++ +++ + +G M + L++L G+V+ LD+ D+ +N IA+GE+
Sbjct: 163 SLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVV 222
Query: 128 IMEEDDTHFGVRVIEILN 145
+++ED FG+R+ EI+
Sbjct: 223 VVDED---FGLRISEIVT 237
>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
Length = 145
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
EP+ S+ ++ ++ +++++IPV++ + LG + I ++ L++G V+ LD GE
Sbjct: 45 GEPVRPFSSG--GETVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 102
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 103 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 133
>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
Length = 122
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 35 TNNSEMLIQKNDVDNISEP--ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ +E L ++ D EP + S+S + D +++++IPV++ + LG + I +
Sbjct: 2 ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAAD-INMVLDIPVQLSVELGRTKVPIKH 60
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 61 ILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 110
>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
Kuenenia stuttgartiensis]
Length = 120
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DLI+++ V + + LG M I +++ LS+G ++ L+K G V++ + + +A+GE+
Sbjct: 37 NLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVV 96
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++EE FG+++ I Q
Sbjct: 97 VVEE---RFGLKITAICGPQ 113
>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 118
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++PV++ + L S + + L+ L +GD++ LD+ VGE +D+ +N + +GE+ E +
Sbjct: 42 HLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV---EVN 98
Query: 134 THFGVRVIEI 143
+GVR++E+
Sbjct: 99 GRYGVRLLEV 108
>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
Length = 212
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DL+ ++ + ++I LG M + +++ ++KG V++LDK G+ VDI +N + IA+GE+ ++
Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194
Query: 130 EEDDTHFGVRVIEIL 144
+ +F VR+ E++
Sbjct: 195 ND---NFCVRIAELI 206
>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 175
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D I++IP+ + LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE
Sbjct: 92 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 151
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 152 VINE---KFGVRLTDIIS 166
>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
Length = 132
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123
>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
Length = 82
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T + L+M++ VK+ + LGSC M + ++ L G VI L++ + V + IN++ IA
Sbjct: 3 EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++E+ +FG+++ E+ N
Sbjct: 63 GEVVVVED---NFGIKITEMANG 82
>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
Length = 149
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA
Sbjct: 59 EPQVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 118
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ + FG+R+ +++
Sbjct: 119 QGEVVVVND---KFGIRLTDVV 137
>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
Length = 132
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123
>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
Length = 194
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE
Sbjct: 111 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 170
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 171 VINE---KFGVRLTDIIS 185
>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
Length = 100
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T DL+M+I + + G+ MQ+ ++ LS GDVI LD+ V + VD+ I ++ +A+GE
Sbjct: 12 TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++ + +F + V E+ Q
Sbjct: 72 VVVL---NGYFALNVTEVAAPQ 90
>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
Length = 119
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I P D LE +N+ ++++ V LGS + + ++ KG +I L K G
Sbjct: 11 IQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDLQKPAG 70
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ESV+I IN + + KGE+ + E++ +RV E+L++
Sbjct: 71 ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEVLDS 104
>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 180
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE
Sbjct: 97 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 156
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 157 VINE---KFGVRLTDIIS 171
>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
Length = 93
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
FDLIM++ V++ + LG M++ +++ L++ V+ LD+ E +D+ +N + IA+GE+
Sbjct: 7 GFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVV 66
Query: 128 IMEEDDTHFGVRVIEILN 145
+ FG+R++E++
Sbjct: 67 AQGD---RFGLRIVELVG 81
>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
Length = 89
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
++ N LEK ++M++PV++ ++LG + + L+ LS G+++ L+++ E VD
Sbjct: 1 MTEPKNPALEK------MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVD 54
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I ++ + +A+G++ + D GV + EI++++
Sbjct: 55 IYVSGRLVARGKLVV---TDGQLGVTLSEIIDSR 85
>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
[Pseudoalteromonas haloplanktis TAC125]
Length = 132
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ +
Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123
>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
Length = 155
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I+++PV++ LG + I +L+ LS+G V+ LD G+ +D+ IN IA+GE+ ++ E
Sbjct: 74 ILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVVNE 133
Query: 132 DDTHFGVRVIEILN 145
+G+R+ +I+
Sbjct: 134 ---KYGIRLTDIVT 144
>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 119
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+ IPV + + +GS + +++LVN+ +G V+ LDK GE +DI +N I + E+ +
Sbjct: 40 FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99
Query: 131 EDDTHFGVRVIEI 143
+ ++G+RV+E+
Sbjct: 100 D---NYGLRVVEL 109
>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
Length = 227
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N++ + +++ ++ + ++I LG + I +V+L G V+ LDK G+ VDI +N
Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ ++ ++ F VRV EIL +
Sbjct: 201 RLIARGEVLVLNDN---FCVRVAEILTPK 226
>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 190
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE +
Sbjct: 108 LDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVV 167
Query: 129 MEEDDTHFGVRVIEILN 145
+ E FGVR+ +I++
Sbjct: 168 INE---KFGVRLTDIIS 181
>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum acetoxidans DSM 771]
Length = 572
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D +LI+++P+ + ++LG I +++ L+ G V+ L V E V++ +N +A+GE+
Sbjct: 486 DKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEV 545
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
++ E+ FGVR+ ++ Q
Sbjct: 546 VVVNEN---FGVRITNVITPQ 563
>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
Length = 143
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
EP+ + + ++ +++++IPV++ + LG + I ++ L++G V+ LD GE
Sbjct: 42 GEPVRPYAGGA-DVPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 100
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 101 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 132
>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 125
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 48 DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK
Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE++D+ +N + +AKGE+ ++ + +G+R++++++
Sbjct: 81 LAGETLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116
>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
Length = 170
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE
Sbjct: 87 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAV 146
Query: 128 IMEEDDTHFGVRVIEILN 145
++ E FGVR+ +I++
Sbjct: 147 VINE---KFGVRLTDIIS 161
>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
Length = 259
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 33 SPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQ 89
SP ++ + + +EP I + ++ T D L+ ++ + + + +G +
Sbjct: 141 SPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKLP 200
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +++L+ G ++ LD+ G D+ +N +A+GE+ +++ED +G+RV EI++
Sbjct: 201 VRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIID 253
>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 194
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D++++IP+ + + +GS M I ++ L+ VI LDK + E +D+ +N +AKGE+
Sbjct: 107 LDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQ 166
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ D +F +++ EIL +
Sbjct: 167 V---DDNFAIKITEILTKE 182
>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
Length = 140
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IPV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ +
Sbjct: 58 LDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVV 117
Query: 129 MEEDDTHFGVRVIEILN 145
+ + FG+R+ ++++
Sbjct: 118 V---NDKFGIRLTDVIS 131
>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
Length = 125
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 48 DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK
Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N + +AKGE+ ++ + +G+R++++++
Sbjct: 81 LAGEPLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116
>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
Length = 127
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D+F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 28 SADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117
>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
Length = 96
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
D F LI +I V++ + LG M++ +++ L + VI LD+ E +D+ +N + IA+GE
Sbjct: 5 ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ F +RV+EI+ A
Sbjct: 65 VI---AQGNRFAIRVLEIVGA 82
>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
Length = 135
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + I++IPV++ + +G I+N++ L+ G V+ LD + G +D+ IN IA+GE+
Sbjct: 50 DIERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVV 109
Query: 128 IMEEDDTHFGVRVIEIL 144
++ + FG+R+ +I+
Sbjct: 110 VVND---RFGIRLTDIV 123
>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
Length = 123
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
Length = 102
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ L+ N+ V M + +G+ + + +L+ L++G V+ LD+ G+ +DI +N IAKGE+
Sbjct: 20 DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++ E FG+R +I++ +
Sbjct: 80 VVGE---KFGIRFGDIVDPR 96
>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
Length = 250
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+L+ + +++ LG + + L++LS G VI LD+ G D+ +N + IA+GE+
Sbjct: 167 GLELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVV 226
Query: 128 IMEEDDTHFGVRVIEILN 145
+++E+ FG+RV EI+
Sbjct: 227 VIDEN---FGIRVTEIIK 241
>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
Length = 127
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117
>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
Length = 96
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
NF L+ ++ VK+ + +GS + + L+ LS+ VI LD++ E +D+ +N I +GE+
Sbjct: 17 NFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVV 76
Query: 128 IMEEDDTHFGVRVIEILN 145
+ + FGVR+ E++N
Sbjct: 77 TVGD---RFGVRMTELVN 91
>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 127
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117
>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
Length = 123
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 47 VDNISEPISSDS--NNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
V + SEP S S N+ T +L+ N+ + + LG M + L++L+ G V
Sbjct: 15 VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ L++ G +D+ +N IA+GE+ +++E+ FGVR+ EI+
Sbjct: 75 VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVG 115
>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
Length = 127
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117
>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
Length = 163
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ ++ + +++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA
Sbjct: 73 EQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 132
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
+GE+ ++ + FG+R+ +++
Sbjct: 133 QGEVVVVND---KFGIRLTDVV 151
>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
Length = 98
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
KS D + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + ++ +A+
Sbjct: 10 KSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69
Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147
G++ ME D VR+ EI + Q
Sbjct: 70 GQLEEMEGDQAGQLAVRLTEIADLQ 94
>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
[Escherichia coli UMN026]
gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Shigella sp. D9]
gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O26:H11 str. 11368]
gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O111:H- str. 11128]
gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli H736]
gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli]
gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Escherichia coli UMN026]
gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O26:H11 str. 11368]
gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O111:H- str. 11128]
gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli 042]
gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
EPECa14]
gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
1180]
gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
1357]
gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
RN587/1]
gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
KO11]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
LT-68]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE
Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +NN + K E+ ++ E +G+RV+E
Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 84
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M++ + + + LG + I ++ L +G +I L K GE VD+ +N + IAKGE+ +++E
Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE- 59
Query: 133 DTHFGVRVIEILNA 146
FGVRV +I+++
Sbjct: 60 --CFGVRVTDIVDS 71
>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
Length = 105
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+
Sbjct: 18 SYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 78 VYEK---NLAIRINEILDSK 94
>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 173
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D++++IP+ + + +GS M I ++ L+ VI LD+ + E +D+ +N +AKGE+
Sbjct: 86 LDILLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQ 145
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ D +F +++ EIL +
Sbjct: 146 V---DDNFAIKITEILTKE 161
>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
Length = 149
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 33 SPTNNSEML-IQKNDVDNISEPISSDSNNILEKSTDNF--DL--IMNIPVKMQIILGSCC 87
+P N+ +++ + + + ++ SS N + +T + DL I++IP+ + +++G+
Sbjct: 24 TPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGTTV 83
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I L+NL G V+ LD+ + V + N + IAK E+ ++ E+ FG+R+ EI+
Sbjct: 84 ITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGEN---FGIRIAEII 137
>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
Length = 105
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+
Sbjct: 18 SYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 78 VYEK---NLAIRINEILDSK 94
>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 123
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+SEP++ + L + +F IPV + + + S + + L+++ G VI LDK G
Sbjct: 25 VSEPVAEQAPASLPQQDLSF--FGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAG 82
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
E +D+ +N AK E+ +M + ++G+R++E
Sbjct: 83 EPLDVKVNGALFAKAEVVVM---NGNYGLRIVE 112
>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
Length = 247
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
DN L+ ++ + + +G + + ++ L G VI LD+ G D+ +N + IA+GE+
Sbjct: 166 DNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEV 225
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ED +G+R+ EI++
Sbjct: 226 VVIDED---YGLRITEIVD 241
>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 192
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+L++++P+ + + +GS M I +V LS V+ LD+ + E +D+ +N +AKGE+
Sbjct: 103 KLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNGVLVAKGELY 162
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+E+ F +++ EIL +
Sbjct: 163 QVED---QFAIKIKEILTKE 179
>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
ATCC 12472]
Length = 116
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+ IPVK+ + +GS + +++L +S G V+ LDK GE +DI +N I + E+ +
Sbjct: 38 FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97
Query: 131 EDDTHFGVRVIEI 143
+ ++G+RV+E+
Sbjct: 98 D---NYGLRVVEL 107
>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
Length = 123
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ P +S + ++ + D F L+ IPV + + + S + +++L+N+ VI LDK
Sbjct: 20 AAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDK 79
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 80 LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 174
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S P S+ + +ST N +L+M++ + + + LG M I ++ L++G V+ LDK VGE
Sbjct: 79 SAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGE 137
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+DI N + +G++ M D +G+++ EI++
Sbjct: 138 DLDILANGHLVGRGKLVAM---DDFYGIQITEIVD 169
>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 193
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ +L+M+IP+++ + +G + + +++ L+ V+ LDK + E VDI IN + +AKGE+
Sbjct: 105 EKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGEL 164
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
E +FGV++ I+ Q
Sbjct: 165 YTAE---NNFGVKITSIVTVQ 182
>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
Length = 248
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N DL+++I V + GS + I L+ GDV+ LD+ + + VD+ + ++ +A+GE+
Sbjct: 162 NVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVV 221
Query: 128 IMEEDDTHFGVRVIEI 143
++ + +FG+RV E+
Sbjct: 222 LV---NGNFGLRVTEV 234
>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 117
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ N+ P + +N LE+ N+ ++++ V LG+ + ++ ++ KG +I L
Sbjct: 8 ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GESV+ +N + I KGE+ + E++ +R+ EIL++
Sbjct: 68 KPAGESVETFVNGRIIGKGEVMVYEKN---LAIRINEILDS 105
>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 113
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 54 ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ D +I E ++ D ++ IPV++ + +G + +++L++ G + L++ GE
Sbjct: 17 LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ I +N + GE+ + E H+G+R+IE+
Sbjct: 77 LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105
>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
LSv54]
gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
psychrophila LSv54]
Length = 123
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D + ++P+++ + +G + I +L+N+ +G VI L+K G+ +D+ +N++ IA+GE
Sbjct: 39 SLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAV 98
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++A
Sbjct: 99 MIGD---KFGIRLTDVVSA 114
>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 101
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+D +++I V+ LG+ + + L+ L G VI L+K GESV++ INN+ KGE+
Sbjct: 14 GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVV 73
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 74 VYEKN---LAIRINEILDSK 90
>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 95
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+DL+++ + + ++LGS + I + ++L +GD+++LDK G DI +N++ I G+I +
Sbjct: 8 YDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIV 67
Query: 129 MEEDDTHFGVRV 140
++E VRV
Sbjct: 68 IDE---KLAVRV 76
>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
Length = 83
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+F L+ +I +KM + LGS I +++L +GDVI L++ + +D+ +N +K+A GEI
Sbjct: 10 DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69
Query: 128 IMEEDDTHFGVRVIEI 143
++ + +GVR++++
Sbjct: 70 VI---NDKYGVRIVDL 82
>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
fetus 82-40]
Length = 101
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+D +++I V+ LG+ + + L+ L G VI L+K GESV++ INN+ KGE+
Sbjct: 14 GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVM 73
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 74 VYEKN---LAIRINEILDSK 90
>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
Length = 118
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+
Sbjct: 31 SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 91 VYEKN---LAIRINEILDSK 107
>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 90
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ + + V+ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N + IA+ E+ ++
Sbjct: 14 EAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVV 73
Query: 130 EEDDTHFGVRVIEIL 144
E+ H V V E+L
Sbjct: 74 ED---HLAVTVTEVL 85
>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
Length = 95
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
EK F+ +IP+KM L + +++ +L+ +GD+I +K GE ++I I N+ +
Sbjct: 6 EKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLG 65
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
GE+ ++ D F +R+ I
Sbjct: 66 MGEVIVL---DNKFAIRITNIF 84
>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 123
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ P S + ++ + D F L+ IPV + + + S + +++L+N+ VI +DK
Sbjct: 20 TPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDTVIEMDK 79
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 80 LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113
>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
TM1040]
gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
Length = 98
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ + + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + ++ +A+
Sbjct: 10 KAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69
Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147
G++ ME D VR+ EI + Q
Sbjct: 70 GQLEEMEGDQAGQLAVRLTEIADLQ 94
>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
Length = 293
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+ ++ +++ + LG + +++++ L+ G +I L+K VGE ++I N + IA+GE
Sbjct: 209 NLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAV 268
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++E FGVR+ ++
Sbjct: 269 VIDE---QFGVRITSLVTG 284
>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
coli RN587/1]
Length = 102
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN
Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
Length = 112
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
LE +++ +++I LGS + I ++N +G VI L K GESVD+ IN + +
Sbjct: 20 LEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIV 79
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
+GE+ + E++ +R+ EIL++
Sbjct: 80 GRGEVMVYEKN---LAIRLNEILDS 101
>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 128
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++PV + LG + + ++NLS G +I LD GE V ++INNQK +GE+ ++ +
Sbjct: 44 IEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVIND 103
Query: 132 DDTHFGVRVIEIL 144
+ +G+R+ +
Sbjct: 104 N---YGIRITSVF 113
>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
Length = 84
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D+++++ VK+ + LGS + + ++ LS G V+ L + + V + +N+Q +A GE+ +
Sbjct: 6 LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVV 65
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+E++ FG+++ E++ ++
Sbjct: 66 VEDN---FGIKITELVGSE 81
>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
Length = 104
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+
Sbjct: 18 SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 78 VYEKN---LAIRINEILDSK 94
>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
Length = 118
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+
Sbjct: 31 SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 91 VYEKN---LAIRINEILDSK 107
>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 134
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
IM++PV + I +G+ + I +L+ L ++ LDK G+ ++I +N IA GE+ + E
Sbjct: 56 FIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTE 115
Query: 131 EDDTHFGVRVIEILN 145
+G+R+I I++
Sbjct: 116 ---NKYGIRIINIID 127
>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
Length = 104
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+
Sbjct: 18 SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 78 VYEKN---LAIRINEILDSK 94
>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 93
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ +PV++ ++LG ++++ L+ L +G V+ L++++ E V+I N+ +A+GE+ I +
Sbjct: 15 VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDG 74
Query: 132 DDTHFGVRVIEILNA 146
D GV + E++ +
Sbjct: 75 D--KIGVTLTELVRS 87
>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 172
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ +++ I LG M I +++ LS+G V+ LDK +GE +DI N + + +G++ ++ D
Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVL---D 149
Query: 134 THFGVRVIEILN 145
++GV++ +I++
Sbjct: 150 DYYGVQITQIVD 161
>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 315
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P+ D I + D+ +++ V+ +GS + ++++ +G V+ LDK+ G
Sbjct: 227 PLQYDREQIGDDKKKLLDITLDVSVR----IGSTVCSVKDVLSFKEGQVLVLDKQAGSPA 282
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
D+ N + I +G++ + + HFG R+IEI+ +
Sbjct: 283 DVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314
>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
Length = 250
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ F L+ ++ +++++ LG + +++++ L+ G V+ L+K VGE + + N + IA+GE
Sbjct: 165 SGTFKLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGE 224
Query: 126 ITIMEEDDTHFGVRV 140
+++E FGVR+
Sbjct: 225 AVVIDE---QFGVRI 236
>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
Length = 320
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71
D P Q+T +P + + + I+ PI I E+ D+
Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDI 250
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++ V+ LGS + ++++L +G ++ LDK+ G D+ +N + I +G++ + +
Sbjct: 251 TLDVSVR----LGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306
Query: 132 DDTHFGVRVIEILN 145
FG R+IE++
Sbjct: 307 ---RFGARIIEVVG 317
>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
Length = 236
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDLIMNI 75
Q + S P ++ D + E IS D + + F L+ ++
Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGD------SGTFKLLADV 160
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+++++ LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E
Sbjct: 161 DLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---Q 217
Query: 136 FGVRV 140
FGVR+
Sbjct: 218 FGVRI 222
>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 178
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N + + +G++
Sbjct: 99 NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158
Query: 128 IMEEDDTHFGVRVIEILN 145
M D +G+++ EI++
Sbjct: 159 AM---DDFYGIQITEIVD 173
>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
Length = 178
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N + + +G++
Sbjct: 99 NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158
Query: 128 IMEEDDTHFGVRVIEILN 145
M D +G+++ EI++
Sbjct: 159 AM---DDFYGIQITEIVD 173
>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
Length = 238
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
LI N+ + + + +G M + + + L G VI LD+ G D+ +N + IA GE+
Sbjct: 158 RLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVV 217
Query: 128 IMEEDDTHFGVRVIEILN 145
++++D + VR+ IL+
Sbjct: 218 VVDQD---YAVRITRILD 232
>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 102
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E++ +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92
>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
cytotoxicus NVH 391-98]
Length = 119
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E++ + D + +I +++ + LG +Q+ ++ NL GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDIKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M D FG+ + EI
Sbjct: 82 IGEAIVM---DEQFGIIISEI 99
>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 269
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+I + IS S+ + ++ D++M++ +++++ +G M + +++++ G ++ LD+
Sbjct: 165 DIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLA 224
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E +DI I ++KI +GE+ I+ D +FG+++ I
Sbjct: 225 NEPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 256
>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
49179]
Length = 139
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + LE+ +++ ++++ V LGS + + ++ +G VI L K GESV
Sbjct: 38 PREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESV 97
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D +N + I KGE+ + E+ + +R+ E+L++
Sbjct: 98 DTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128
>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
Length = 98
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
D+ +LE + + N+P+++ I +G + L+ L + V+ LD+R+ + V+I
Sbjct: 6 PDAKPLLEGANPA---LWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
I ++ IA+GE+ E++ VR+ E+
Sbjct: 63 IGDRLIARGELQESEDEPGQLAVRLTEV 90
>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
Length = 102
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
D + +L+ D I++I V LG+ M ++ L+ L G VI L+K GESV++
Sbjct: 8 GDRHGLLQSYED----ILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELY 63
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IN + KGE+ + E++ +R+ EIL+++
Sbjct: 64 INKRIFGKGEVMVYEKN---LAIRINEILDSK 92
>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
Length = 102
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E++ +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92
>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
Length = 189
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D + ++ + ++I LG + I ++ L +G V+ LDK G+ VDI +N + +A+GE+ +
Sbjct: 113 LDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLV 172
Query: 129 MEEDDTHFGVRVIEILN 145
+ + +F VR+ EIL
Sbjct: 173 L---NDNFCVRIAEILT 186
>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
Length = 261
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
ST N +L++++ + + + G + + +++L+ G V+ LD++V E V++ ++ + +A+G
Sbjct: 180 STSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDGKVVARG 239
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E I+ D ++G+R+ ++L
Sbjct: 240 EAVII---DGNYGMRITQVLQ 257
>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
aurantiaca DW4/3-1]
gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
aurantiaca DW4/3-1]
Length = 441
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 19 SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
S+ I P Q SP + D + SE S D+ N E S DL+ +IP+
Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + L + +V+L G V+ L + GE V++++N + +A+GE+ E + G
Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELV---EVEGQLG 433
Query: 138 VRVIEI 143
VRV+ +
Sbjct: 434 VRVLSL 439
>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
siraeum 70/3]
Length = 400
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 42/62 (67%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++
Sbjct: 339 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398
Query: 127 TI 128
+
Sbjct: 399 LL 400
>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
Length = 150
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ ++PV + + LG+ + + ++ L K +I LDK GE+ + +N + +A GE+ ++
Sbjct: 69 NFFESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVI 128
Query: 130 EEDDTHFGVRVIEI 143
+ +FG RV E+
Sbjct: 129 ---NDNFGFRVAEV 139
>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
Length = 126
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T + + ++P+++ + +G + + +L+ + +G V+ LDK GE +D+ +N + IA+GE
Sbjct: 41 TRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGE 100
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ + FG+++ E+++
Sbjct: 101 AVKVGD---KFGIKLTEVVS 117
>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
269.97]
gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
81-176]
gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
269.97]
gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni S3]
gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni 305]
gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
327]
Length = 102
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E++ +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92
>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
Length = 120
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
NDV++IS+ S S K + + +IPV + + +G+ + + L+ + V+ L
Sbjct: 23 NDVNDISDAPPSSS----AKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLML 78
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
K G+++DI +N + A GE+ + + H+GV++ +I+N
Sbjct: 79 TKENGKALDIKVNGKLFAYGEVVVA---NGHYGVKITDIVN 116
>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 95
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG +++ L+N KG ++ K GE VD +N + +A GEI ++ D F VR+ E
Sbjct: 22 LGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVL---DERFAVRITE 78
Query: 143 ILNAQ 147
IL +
Sbjct: 79 ILEKE 83
>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
M1]
Length = 105
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 11 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E++ +R+ EIL+++
Sbjct: 71 IFGKGEVMVYEKN---LAIRINEILDSK 95
>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
Length = 123
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV + + + S + + L+++ G VI LDK GE +D+ +N AK E+ +M +
Sbjct: 48 IPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVM---NG 104
Query: 135 HFGVRVIE 142
++G+R++E
Sbjct: 105 NYGLRIVE 112
>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
Length = 124
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 77 VKMQII--LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+KM+I+ +G+ + + L+ L +GDV+ LDK +G+ +D+ I+ ++ A GE+ ++ E
Sbjct: 46 IKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE--- 102
Query: 135 HFGVRV 140
+GVR+
Sbjct: 103 MYGVRI 108
>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
Length = 238
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+++ + + + N ++ ++ + + +G + + +++L+ G V+ LD+ G D
Sbjct: 141 VATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGSPAD 200
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ +N + +A+GE+ +++E +G+RV EI+
Sbjct: 201 VLVNGRLVARGEVVVVDE---VYGIRVTEIV 228
>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
Length = 289
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI +G
Sbjct: 202 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 261
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E I+E FG+++ I+N
Sbjct: 262 EAVIVE---GKFGLKIKRIIN 279
>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
QCD-63q42]
gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
43255]
gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
Length = 124
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + +N I+++ +++ +++G M + +++NL KG +I LD + V+I I+N+ +A
Sbjct: 36 EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLA 95
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
G++ ++ D +FGV++ I++ +
Sbjct: 96 YGKVVVV---DLNFGVKITSIVSEE 117
>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
Length = 108
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++Q++LG + + L+ + +G VI LD V E V I NN +A+GEI I
Sbjct: 34 VEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEIQI 85
>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
Length = 288
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI +G
Sbjct: 201 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 260
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E I+E FG+++ I+N
Sbjct: 261 EAVIVE---GKFGLKIKRIIN 278
>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
Length = 83
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 43/64 (67%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T+ + +I +K+ +++G M S ++ L +GD+ITLDK++ + +++T+N+Q+ GE
Sbjct: 8 TEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQEFGIGE 67
Query: 126 ITIM 129
+ ++
Sbjct: 68 LIVI 71
>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
Length = 279
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ + +++ +GS M + +++ + G VI LD+ + ++I I ++KIA GE+
Sbjct: 196 NIGLIMDVRLPIRVRIGSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVV 255
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FGV++ EI
Sbjct: 256 IV---DGNFGVQITEI 268
>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 88
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ I +G + L+ L + V+ LD+RV + VD+ + ++ I +GE+T +E D
Sbjct: 11 QVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGDQ 70
Query: 134 T-HFGVRVIEILN 145
VR+ E+ N
Sbjct: 71 AGQLAVRLTEVAN 83
>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
Length = 117
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S+ + + I NIPV + + + S + + +L+N+ G VI LDK GE++D+ +N +
Sbjct: 30 SSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHA 89
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ I+ + +G+R++ +++
Sbjct: 90 EVVIV---NNKYGLRLVSVVD 107
>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
Length = 117
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + LE+ +++ ++++ + LGS + + ++ +G VI L K GESV
Sbjct: 16 PRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESV 75
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D +N + I KGE+ + E++ +R+ E+L++
Sbjct: 76 DTFVNGRVIGKGEVMVYEKN---LAIRLNEVLDS 106
>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 116
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S+++ I NIPV + + + S +++ +L+N++ G VI LDK GE +D+ +N +
Sbjct: 29 SSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHA 88
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ + +G+R++ +++ +
Sbjct: 89 EVVVV---NNKYGLRLVNVVDEK 108
>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
Length = 90
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
+P+++ I +G + +L+ + + ++ LD+RV + V++ + ++ IA+GE+T ME D
Sbjct: 13 QVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGDS 72
Query: 133 DTHFGVRVIEILNAQ 147
+ VR+ E+++ Q
Sbjct: 73 NGQLAVRLTEVVDLQ 87
>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
kujiense DSM 16994]
Length = 114
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S ++D ++++ V+ LG + + ++ L KG VI L K GESV+ +N + I
Sbjct: 22 ELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNRRIIG 81
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E++ +R+ E+L++
Sbjct: 82 KGEVMVYEKN---LAIRINEVLDS 102
>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
Length = 151
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+++ + I ++Q+ +G+ + + L+ + V+ LD+ + VD+TI + +A+G++
Sbjct: 69 DWNPLHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEGKVVARGQLV 128
Query: 128 IMEEDDTHFGVRVIEI 143
+ D HF VR+ E+
Sbjct: 129 AV---DGHFAVRITEL 141
>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
51449]
Length = 117
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
LE N+ ++++ LGS + + ++ KG +I L K GESV+I IN + I
Sbjct: 24 LEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVI 83
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E + +R+ EIL++
Sbjct: 84 GKGEVMVYERN---LAIRINEILDS 105
>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
Length = 119
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 119
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
Length = 95
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
IP+++ + +G I +L+N+ + V+TLDKRV + VD+ + +Q +A+G + ME E
Sbjct: 18 IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77
Query: 134 THFGVRVIEI 143
VR+ EI
Sbjct: 78 GQLAVRLTEI 87
>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
Length = 127
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
LG M + ++L +G VI LD+ GE++D+ +N K+A+GE+ ++
Sbjct: 58 LGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVI 104
>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Bacillus anthracis str. A2012]
gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. Ames]
gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
str. Sterne]
gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
Length = 119
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
Length = 119
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
Length = 111
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+
Sbjct: 30 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 89
Query: 127 TIMEEDDTHFGVRVIEILN 145
+ E+ +G++VI++ N
Sbjct: 90 VVSGEN---YGLKVIDLEN 105
>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
Length = 226
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N+ + + I LG + I ++ + +G V+ LDK G+ VDI +N + IA+GE+ ++
Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVL-- 210
Query: 132 DDTHFGVRVIEILNAQ 147
+ +F VRV EI++ +
Sbjct: 211 -NDNFCVRVAEIISPE 225
>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
Hakam]
gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
Length = 119
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 119
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
Length = 71
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++ D FG+R+
Sbjct: 3 LGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVV---DDKFGIRLTN 59
Query: 143 ILN 145
I++
Sbjct: 60 IIS 62
>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
Length = 95
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ + +G I +L+N+ + V+TLD+R+ + VD+ + +Q +A+G + ME D
Sbjct: 18 VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLYVGDQLVARGLLEEMEGDQA 77
Query: 135 -HFGVRVIEILNAQ 147
VR+ EI + Q
Sbjct: 78 GQLAVRLTEISDLQ 91
>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
Length = 112
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV++++++G + L+ + G VI +D+ + VDI +N + IAKGE+ I+ D
Sbjct: 41 DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVII---D 97
Query: 134 THFGVRVIEILNAQ 147
GV++ E++ Q
Sbjct: 98 GKIGVKIKEVVKEQ 111
>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 318
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P+ + ++I E+ D+ +++ V+ I G+ C + +++ L KG ++TLDK+ G
Sbjct: 230 PLDNQVDHIGEERKKLRDITLDVSVR---IGGTVC-SVKDILALQKGQILTLDKQAGSPA 285
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
D+ +N + I K ++ + D F R+IEI+ +
Sbjct: 286 DVVVNGKLIGKSDVLVT---DDKFAARIIEIIGKR 317
>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 115
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+
Sbjct: 34 DPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93
Query: 127 TIMEEDDTHFGVRVIEILN 145
+ E+ +G+++I++ N
Sbjct: 94 VVSGEN---YGLKIIDLEN 109
>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ I +G Q+ +L+ L + V+ LD+RV + V++ + ++ IA+GE+ ++ D
Sbjct: 12 QVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGDQ 71
Query: 134 T-HFGVRVIEILN 145
VR+ E+ N
Sbjct: 72 AGQLAVRLTEVAN 84
>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH187]
gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
Length = 119
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
Length = 100
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 41/60 (68%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I + PV++++++G+ +++ +L+ L +G V+ LD+ + + D+ + +A+GE+ I+++
Sbjct: 23 IGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEGVLVARGEVAIIDD 82
>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
Length = 128
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D + P + + LE N++ ++++ V LG+ + ++ ++ KG +I L
Sbjct: 15 DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K G SV+I +N++ + KGE+ + E + +R+ EIL++
Sbjct: 75 KPAGASVEIFVNDRVVGKGEVMVYERN---LAIRINEILDS 112
>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
Length = 119
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 122
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+++ I +GS + + ++ L ++ LD+ + E VDI IN + +AKG++ + E+
Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIREN- 102
Query: 134 THFGVRVIEILNAQ 147
+G+++ +I+ +
Sbjct: 103 --YGIKITQIITPE 114
>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
Length = 98
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+++ I++I V LG+ M + L+ L G VI L+K GESV++ +N + KGE+
Sbjct: 11 SYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVM 70
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ E++ +R+ EIL+++
Sbjct: 71 VYEKN---LAIRINEILDSK 87
>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 293
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 51 SEPISSDSNNIL-EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
S P S+ +++L ++S+ N L+ +I +K+ + LG+ + +++ G++I L++ V
Sbjct: 190 SLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLLKDILKWDIGEIIELEQMVN 249
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
E +DI +N KI +GE I+E FG+++ I N
Sbjct: 250 EPLDILVNGIKIGEGEAVIVE---GKFGLKIKNIGN 282
>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis EO147]
gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis C6786]
Length = 115
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 53 PISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
P +SDS + I D L+ IPV++ + +GS + ++ L+ + +G V+ LD+ GE
Sbjct: 18 PEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGE 77
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ I IN + E+ + ++G++++++
Sbjct: 78 PLLIKINGTPVGHAEVVV---SGDNYGLKLLDL 107
>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
Length = 119
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG +Q+ ++ L GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
Length = 270
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 51 SEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
SE S+ S + L+ N +++++I +++++ +GS M + +++ + G ++ L++
Sbjct: 168 SEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAK 227
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E +DI I ++KI +GE+ I+ D +FG+++ I
Sbjct: 228 EPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 258
>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
Length = 127
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN GEI
Sbjct: 49 NVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108
Query: 128 IMEEDDTHFGVRVIEIL 144
+ +GVR++ I+
Sbjct: 109 ---SKNGQYGVRLLSII 122
>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
centenum]
gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 103
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 42/60 (70%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I + V++ ++LG+ +++ +L+ L +G ++ LD+++ + DI ++ + + +GE+TI+E+
Sbjct: 30 IYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDIIVSGRMVGRGEVTIVED 89
>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
Length = 127
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN GEI
Sbjct: 49 NISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108
Query: 128 IMEEDDTHFGVRVIEIL 144
+ +GVR++ I+
Sbjct: 109 ---SKNGQYGVRLLSII 122
>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
Length = 137
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ ++ K L IPV + + + S
Sbjct: 19 DESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
Length = 119
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
Length = 467
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+D++S+P D DL+ ++P+++ + L + +V L G V+ L++
Sbjct: 385 LDDVSKP-------------DGSDLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNR 431
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GE V++++N + +A+GE+ +E GVR+I +
Sbjct: 432 GPGEPVELSVNGKVVARGELVELE---GQLGVRIITL 465
>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
Length = 115
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+
Sbjct: 34 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEV 93
Query: 127 TIMEEDDTHFGVRVIEILN 145
+ E+ +G+++I++ N
Sbjct: 94 VVSGEN---YGLKIIDLEN 109
>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNEILDS 112
>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
QCD-66c26]
gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
107932]
gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
QCD-76w55]
gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
QCD-97b34]
gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
QCD-37x79]
gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
QCD-32g58]
gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
Length = 124
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + +N I+++ +++ +++G M + +++NL KG +I L+ + V+I I+N+ +A
Sbjct: 36 EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLA 95
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
G++ ++ D +FGV++ I++ +
Sbjct: 96 YGKVVVV---DLNFGVKITSIVSEE 117
>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei]
gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+
Sbjct: 34 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93
Query: 127 TIMEEDDTHFGVRVIEILN 145
+ E+ +G+++I++ N
Sbjct: 94 VVSGEN---YGLKIIDLEN 109
>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
Length = 133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++ + +EKS F +++++P+ + + +GS M + ++ L+ V+ L++ + E VD+
Sbjct: 39 TEEEDRIEKS--KFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLK 96
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N + IAKGE+ ++ +FG+++ ++ +
Sbjct: 97 VNGKVIAKGELYTVK---NNFGLKITHVVTPE 125
>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
Length = 99
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++PV + + +G + + ++ L VI L +V + VD+ I+++ IAKGE ++E
Sbjct: 22 IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGE--LVET 79
Query: 132 DDTHFGVRVIEILN 145
DD V+++EI+
Sbjct: 80 DDGQIAVKIVEIIE 93
>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
Length = 88
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130
+ +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+T +E
Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68
Query: 131 EDDTHFGVRVIEILN 145
E VR+ E+ N
Sbjct: 69 EQAGQLAVRLTEVAN 83
>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
Length = 122
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NIP+ + + + S + I +L+ LS G VI LDK E +D+ +N Q +A E+ ++ +
Sbjct: 46 NIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVV---N 102
Query: 134 THFGVRVIEILN 145
+GV++I++++
Sbjct: 103 GKYGVKLIDVVD 114
>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 133
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
FD+ MNI V+ LG ++I +L+N SKG ++ L ++ + + + NN+ IA GEI
Sbjct: 55 FDIEMNITVE----LGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110
Query: 129 MEEDDTHFGVRVIEILNA 146
+ +G+R+I I N+
Sbjct: 111 ---SNNKYGIRIISINNS 125
>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
Length = 109
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 12 EVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 72 IGEAIVMDE---KFGIIISEI 89
>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 88
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130
+ +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+T +E
Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68
Query: 131 EDDTHFGVRVIEILN 145
E VR+ E+ N
Sbjct: 69 EQAGQLAVRLTEVAN 83
>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
B4264]
gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 119
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
Length = 112
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 52 EPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
EPI + S N+ L + L IPV + + + S + +S L+ ++ VI LDK GE
Sbjct: 13 EPIEAPSVNDSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELDKLAGE 72
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+DI +N + E+ ++ E +G+R++
Sbjct: 73 PLDIKVNGIMFGQAEVVVINE---KYGLRIV 100
>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
Length = 288
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N LIM++ + +++ +G M + +++N+ G VI L++ + +DI ++N IA+GE+
Sbjct: 203 NNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEV 262
Query: 127 TIMEEDDTHFGVRVIEI 143
I+ D +FGV++ I
Sbjct: 263 VIV---DGNFGVQITSI 276
>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
Length = 98
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
Length = 109
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 12 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 72 IGEAIVMDE---KFGIIISEI 89
>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 129
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 43 QKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
Q+N+V S PIS S +N L + L IPV + + + S + +S L+++
Sbjct: 19 QENEV---SAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSV 75
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ VI LDK GE +DI IN + E+ ++ E +G+R+I N+Q
Sbjct: 76 NNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS-FNSQ 122
>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
furnissii NCTC 11218]
Length = 122
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
NIPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++
Sbjct: 43 FFRNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVN 102
Query: 131 EDDTHFGVRVIEILNA 146
+ +G+R+I++L++
Sbjct: 103 D---KYGLRLIDVLDS 115
>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 137
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ ++ K L IPV + + + S
Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
Length = 119
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
Length = 137
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ ++ K L IPV + + + S
Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 119
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++ +P+ + + +G + L+ L K V+ LDKR+ + V++ + IA+G ++EE
Sbjct: 12 LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG---VLEE 68
Query: 132 D-DTH-FGVRVIEILNAQ 147
D D+H VR+ E+++ +
Sbjct: 69 DADSHRLSVRLTEVISPE 86
>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
Length = 104
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S ++ I+++ V+ LG + ++ ++ L KG +I L K GESV+ +N + +
Sbjct: 12 ELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILG 71
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E+ + +R+ E+L++
Sbjct: 72 KGEVMVYEK---NLAIRINEVLDS 92
>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
Length = 279
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S+ N+ ++ N +++++ + +++ +G M + ++ ++ G VI L++ E ++I
Sbjct: 182 SAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVTSMDIGSVIELNQLANEPLEI 241
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
I+++ IAKGE+ I+ D +FG++V EI
Sbjct: 242 LIDDKVIAKGEVVIV---DGNFGIQVTEI 267
>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
excentricus CB 48]
gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
excentricus CB 48]
Length = 93
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++ ++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE
Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 73
>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 101
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+EK ++ +++ V + +G M I +++L +G +I L K GES ++ +N + I
Sbjct: 8 VEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRII 67
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E+ + +R+ E+L+A
Sbjct: 68 GKGEVMVYEK---NLAIRLNEVLDA 89
>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
Length = 123
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
Length = 119
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDIKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE T+M+E FG+ + EI
Sbjct: 82 IGEATVMDEK---FGIIISEI 99
>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
391-98]
Length = 554
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLI-----MNIPVKMQIILGSCCMQISNLVNL 96
I++ +V+ I EP + + +LE T + I N+ + ++ + GS I ++++L
Sbjct: 451 IKEENVEEIPEP-AVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSL 509
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ D + LD+ V E + I +NN +A GE+ + D FGV+V
Sbjct: 510 HENDAVVLDEEVDEPIRIYVNNVLVAYGELVNV---DGFFGVKV 550
>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
Length = 95
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+E S +DL+++ + + ++LGS + + + L++GD+I+L K G +I +N++ I
Sbjct: 1 MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60
Query: 122 AKGEITIMEE 131
G+I +++E
Sbjct: 61 GTGDIIVIDE 70
>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
JL354]
Length = 118
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D + LI I V++ + LG + + ++ L + ++ LD+ E +DI +N + IA+GE+
Sbjct: 6 DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65
Query: 127 TIMEEDDTHFGVRVIEILNA 146
F +R++E+ A
Sbjct: 66 V---AQGNRFAIRILELSGA 82
>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 78
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 7 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 63
Query: 143 ILNA 146
IL++
Sbjct: 64 ILDS 67
>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 128
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LI +IPV++ + + + + ++++ VI LDK+ GE VDI IN G I
Sbjct: 49 NMGLIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNII 108
Query: 128 IMEEDDTHFGVRVIEILN 145
I D +GV+V+ ++N
Sbjct: 109 I---QDGKYGVQVLALVN 123
>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
Length = 98
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
Length = 123
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 123
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
Length = 119
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG +++ ++ L GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
Length = 123
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
Length = 109
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI-TIMEED 132
++P+++ + +G I +L+ L + V+TLDKRV + VD+ + ++ +A+G++ + E
Sbjct: 31 SVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPVDLYVGDRLVARGQLEELTGEQ 90
Query: 133 DTHFGVRVIEI 143
VR+ EI
Sbjct: 91 AGQLAVRLTEI 101
>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
Length = 119
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I + + + LG + + ++ L GDV+ ++K +G VD+ ++N K+
Sbjct: 22 EAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDE---KFGIIISEI 99
>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
Length = 116
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
LE N+ ++++ V LG+ + + ++ KG +I L K GES++ IN + I
Sbjct: 24 LEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVI 83
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E + +R+ EIL++
Sbjct: 84 GKGEVMVYERN---LAIRINEILDS 105
>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
Length = 123
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
Length = 123
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
Length = 71
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE
Sbjct: 1 MLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 51
>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
Length = 83
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++ ++LG + +S L+ + +G VI LD G+ V I NN +A+GEI I
Sbjct: 9 VEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60
>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
CMR15]
Length = 132
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
++ + +G+ + + L+ V+ LD +V + VD+ + + +A+G++ ++E HF
Sbjct: 63 AQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HF 119
Query: 137 GVRVIEI 143
GVR+ E+
Sbjct: 120 GVRITEL 126
>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 322
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
I N PV+++ ILG + L++L GD++TL +R+ E VD+ + KG++
Sbjct: 253 IKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKL 307
>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E
Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108
Query: 143 ILNA 146
IL++
Sbjct: 109 ILDS 112
>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 122
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ NIPV + + + S + + +L+ +G VI LDK GE +D+ +N + E+
Sbjct: 40 DLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVV 99
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ E +G+R+I+I+++
Sbjct: 100 VVNE---KYGLRLIDIVDS 115
>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
Length = 293
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 20/122 (16%)
Query: 39 EMLIQKNDVDNISEPISS----------------DSNNILEKS-TDNFDLIMNIPVKMQI 81
E +K + NIS+PI D ++ LE++ N +++++I + +++
Sbjct: 162 ETFKKKEVIKNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRV 221
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+G M + ++V++ G V+ L++ V + ++I ++++ IAKGE+ I+ D +FG+++
Sbjct: 222 RIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIV---DGNFGIQIT 278
Query: 142 EI 143
EI
Sbjct: 279 EI 280
>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
Length = 123
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV + + + S + + L+ VI LDK GE +D+ +N AK E+ +M +
Sbjct: 48 IPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVM---NG 104
Query: 135 HFGVRVIEI 143
++G+R++E+
Sbjct: 105 NYGLRIVEL 113
>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
Length = 98
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
++P+++ + +G I +L+ L K V+ LD+RV ++V++ + + IA+G++ + D
Sbjct: 21 SVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQ 80
Query: 133 DTHFGVRVIEILNAQ 147
VRV E+ N Q
Sbjct: 81 QGQIAVRVTEVANLQ 95
>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
Length = 502
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 491 DHFGIQMTELVR 502
>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 502
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 491 DHFGIQMTELVR 502
>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
KBAB4]
gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
Length = 119
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+
Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE +M+E FG+ + EI
Sbjct: 82 IGEAIVMDEK---FGIIISEI 99
>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 122
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + NIPV + + + S + + +L++ +G +I LDK GE +D+ +N +
Sbjct: 36 QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
E+ ++ E +G+R+I+++++
Sbjct: 96 AEVVVVNE---KYGLRLIDVVDS 115
>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-175]
gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 99
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 89 ENFGIVISEI 98
>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes Clip81459]
gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-208]
gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
L99]
gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 100
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 33 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 90 ENFGIVISEI 99
>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 94
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D+IM++ V+ LG I L++ +G +I L+K GE VD+ +NN+ +A GEI ++
Sbjct: 12 DVIMDVTVE----LGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVL 67
Query: 130 EEDDTHFGVRVIEI 143
+E F R+ +I
Sbjct: 68 DE---KFAFRLSDI 78
>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
Length = 396
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ + L M ++ L+ LS G ++T K + +DI I N++ A+GE + E HF
Sbjct: 320 VQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGE---HF 376
Query: 137 GVRV 140
GV+V
Sbjct: 377 GVKV 380
>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 99
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 89 ENFGIVISEI 98
>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J2-064]
Length = 99
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 89 ENFGIVISEI 98
>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 99
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M
Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87
Query: 132 DDTHFGVRVIEI 143
D +FG+ + EI
Sbjct: 88 -DENFGIVISEI 98
>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
Length = 131
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
LG +++ ++NL G VI L+K G++++I N++K AKGE+ ++ + F VR+
Sbjct: 60 LGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVNDS---FAVRI 114
>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 100
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 33 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 90 ENFGIVISEI 99
>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 99
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D
Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88
Query: 134 THFGVRVIEI 143
+FG+ + EI
Sbjct: 89 ENFGIVISEI 98
>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
Length = 165
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+ + + +G M + L++L G+ I LD R +D+ +N ++AKGE+ + E
Sbjct: 98 DIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGE-- 155
Query: 134 THFGVRVIEI 143
+ G+R++E+
Sbjct: 156 -NLGIRILEL 164
>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 99
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M
Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87
Query: 132 DDTHFGVRVIEI 143
D +FG+ + EI
Sbjct: 88 -DENFGIVISEI 98
>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
Length = 122
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
NIPV + + + S + + +L+ +G VI LDK GE +D+ +N + E+ ++
Sbjct: 43 FFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVN 102
Query: 131 EDDTHFGVRVIEILNAQ 147
E +G+R+I+++++
Sbjct: 103 E---KYGLRLIDVVDSA 116
>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 98
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T + + NI V + + LG M + ++ L+ GD++ ++K+ G V+I ++ +K+
Sbjct: 21 RDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGI 80
Query: 124 GEITIMEEDDTHFGVRVIEI 143
GE +M D +FG+ + EI
Sbjct: 81 GEAILM---DENFGIVISEI 97
>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
Clip81459]
gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 515
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ ++EP+ E ++ ++ +IPV ++++ G+ +++ ++ + DVI L +
Sbjct: 421 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 480
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ E + + +N I KG I+ D HFG+++ E++
Sbjct: 481 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 99
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M
Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87
Query: 132 DDTHFGVRVIEI 143
D +FG+ + EI
Sbjct: 88 -DENFGIVISEI 98
>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
Length = 504
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ ++EP+ E ++ ++ +IPV ++++ G+ +++ ++ + DVI L +
Sbjct: 410 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 469
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ E + + +N I KG I+ D HFG+++ E++
Sbjct: 470 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 504
>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
Length = 109
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ LG+ + + +L+ L +G VI L+K GE +D+ +N++ IA+ E ++ E
Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89
Query: 135 HFGVRVIEILN 145
G+R+ ++++
Sbjct: 90 KIGLRLTDVVS 100
>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
1251]
gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
Length = 283
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ + +++ +G M + +++N+ G VI L++ + +DI +++ IA+GE+
Sbjct: 199 NIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVV 258
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FGV++ I
Sbjct: 259 IV---DGNFGVQITSI 271
>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 502
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKG---ILVRVD 490
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 491 DHFGIQMTELVR 502
>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 120
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+N+SEP + + E+ + NIPV + + + S + + +L+ +G VI LDK
Sbjct: 24 ENLSEPAYTP---LPER---DLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKM 77
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE +D+ +N + E+ ++ + +G+R+I++++
Sbjct: 78 NGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVD 112
>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
1251]
gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
denitrificans DSM 1251]
Length = 111
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S ++ ++++ V+ LG + + ++ L KG +I L K GESV+ +N + +
Sbjct: 20 ELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILG 79
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
+GE+ + E++ +R+ E+L++
Sbjct: 80 RGEVMVYEKN---LAIRINEVLDS 100
>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
Length = 102
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ + LG M + +++ + +G V+ L++ E +D+T N + +A+GE+ D F
Sbjct: 16 VRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVI---AQDGRF 72
Query: 137 GVRVIEILN 145
+R++E++
Sbjct: 73 ALRIVELVG 81
>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
Length = 78
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
N+ V++ ++LG M I L+ + +G VI L R E + + NN IA+GEI + E
Sbjct: 6 NVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGE 63
>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
profundicola AmH]
Length = 103
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + + ++ L KG VI L K GES ++ IN + I KGE+ + E+ + +R+ E
Sbjct: 32 LGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYEK---NLAIRLNE 88
Query: 143 ILNA 146
+L+A
Sbjct: 89 VLDA 92
>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
Length = 100
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
++P+++ + +G I +L+ L K V+ LD+RV + V++ + + +A+G + ++ D
Sbjct: 22 SVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQ 81
Query: 133 DTHFGVRVIEILNAQ 147
VRV E+ N Q
Sbjct: 82 QGQIAVRVTEVANLQ 96
>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
fetus 82-40]
gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
Length = 276
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ + +++ +GS M + +++++ G VI L++ + +++ I ++++A GE+
Sbjct: 193 NIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQVALGEVV 252
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FGV++ EI
Sbjct: 253 IV---DGNFGVQITEI 265
>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
translocase SctQ) [Candidatus Protochlamydia amoebophila
UWE25]
Length = 445
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
SSP NN+ SS +++I E + IPV + + +G M +
Sbjct: 349 SSPKNNASQ--------------SSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMD 394
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+L+ L G+++ L+ + + VD+TIN + + +GE+ + E GVRV+E+
Sbjct: 395 HLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443
>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
Length = 132
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L IPV + + + S + ++ L++++ V+ LDK GE +DI +N K E+ ++
Sbjct: 53 LFSRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLN 112
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+IE
Sbjct: 113 D---KYGLRIIEF 122
>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 101
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ +LI ++ V++ + LG M + L L GDV+ L ++V E + ++ + +A+G +
Sbjct: 28 DMNLIKHVVVELVVQLGHASMSVDELFALKAGDVVKLLEQVHEPASLCLDGKPVARGNLV 87
Query: 128 IMEEDDTHFGVRVIEIL 144
+ D +FG+++ EIL
Sbjct: 88 AV---DDNFGIQLTEIL 101
>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
Length = 295
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+MN+ VK+ + L +++S L+NL G ++ K + +D+ +NN+ A+GE + E
Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273
Query: 132 DDTHFGVRVIEI 143
FG++V EI
Sbjct: 274 ---KFGLKVNEI 282
>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
Length = 94
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ I +G + L++L++ ++ LDK + + VDI + ++ IA+GE+ +E+ +
Sbjct: 15 DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74
Query: 134 -THFGVRVIEILNA 146
+ VR+ EI++
Sbjct: 75 ISQLAVRLTEIIDP 88
>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 121
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++ E
Sbjct: 46 IPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102
Query: 135 HFGVRVIEILNA 146
+G+R+I+++++
Sbjct: 103 KYGLRLIDVVDS 114
>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
Length = 515
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
1740]
gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 289
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
N+ E N +++++ +++++ +G M + +++++ G V+ L++ + ++I ++++
Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256
Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143
IAKGE+ I+ D +FG+++ EI
Sbjct: 257 VIAKGEVVIV---DGNFGIQITEI 277
>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
SouthAfrica7]
Length = 282
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 60/101 (59%), Gaps = 12/101 (11%)
Query: 52 EPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
EP S++S K+ D N +++++ + +++ +G M + ++V++ G V+
Sbjct: 173 EPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 232
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
LD+ V + ++I ++++ IAKGE+ I+ D +FG+++ +I
Sbjct: 233 ELDQLVNDPLEILVDDKVIAKGEVVIV---DGNFGIQITDI 270
>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 515
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
Length = 515
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
Length = 515
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
Length = 515
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515
>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
Length = 95
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-ED 132
++P+++ + +G + +L+ L +G V+TLDKR+ + V++ + ++ I G + ++E +
Sbjct: 18 SVPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGE 77
Query: 133 DTHFGVRVIEILN 145
+ VR+ E+++
Sbjct: 78 NGQLAVRLTEVVD 90
>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
Length = 513
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
I++++ ++P+ + L ++ ++ +IPV ++++ G+ +++ ++ + DV
Sbjct: 416 IKEHETKEPAQPVVMEEKETL---SEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDV 472
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I L + + E + + +N I KG I+ D HFG+++ E++
Sbjct: 473 IILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 513
>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
Length = 287
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
Length = 287
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
Length = 514
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 446 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 502
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 503 DHFGIQMTELVR 514
>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
Gambia94/24]
Length = 285
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273
>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
Length = 279
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I +PV++ ++ S M +S ++ L GD++ + R+ E D+ IN QK+ +G I E+
Sbjct: 209 IRQLPVRLDCVVASLQMPLSQVLALRPGDILPM--RLLERCDVQINQQKLFRG--AIFED 264
Query: 132 DDTHF 136
D + F
Sbjct: 265 DGSLF 269
>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 285
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273
>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
Length = 284
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ + M++ +GS M + +++ + G VI L++ + ++I I ++ IA GE+
Sbjct: 201 NIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIGDKVIALGEVV 260
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 261 II---DGNFGIQITQI 273
>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
Length = 504
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 493 DHFGIQMTELVR 504
>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
Length = 98
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+S N+ K+TD + +++PV++ + +G I +LV L + ++TLDKRV + VD+ +
Sbjct: 3 ESENLNMKATDASNPFVSVPVEVVVSVGKARPLIRDLVGLGENAILTLDKRVEDPVDLYV 62
Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
++ +A+G++ M+ E VR+ EI + Q
Sbjct: 63 GDRLVARGQLEEMDGEQAGQLAVRLTEIADLQ 94
>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
Length = 504
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 493 DHFGIQMTELVR 504
>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 515
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 447 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 503
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 504 DHFGIQMTELVR 515
>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273
>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 515
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 484 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 515
>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
Length = 287
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
Length = 504
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E
Sbjct: 413 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 472
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +N I KG I+ D HFG+++ E++
Sbjct: 473 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 504
>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
Length = 398
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 387 DHFGIQMTELVR 398
>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
Length = 398
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 387 DHFGIQMTELVR 398
>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
Length = 286
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LI ++ + +++ +GS M + +++++ G VI LD+ + ++I + ++ IA GE+
Sbjct: 203 NIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FGV++ EI
Sbjct: 263 IV---DGNFGVQIGEI 275
>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
Length = 284
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 61/103 (59%), Gaps = 13/103 (12%)
Query: 51 SEPISSDSNNILEKSTDNFDL----------IMNIPVKMQIILGSCCMQISNLVNLSKGD 100
S+ ++ D+N E + F+L ++++ +++++ +G M + +++ + G
Sbjct: 174 SDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGS 233
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+ L++ +S+++ ++++ IAKGE+ I+ D +FG+++ EI
Sbjct: 234 VVELNQLANDSLEVLVDDKVIAKGEVVIV---DGNFGIQITEI 273
>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
Sheeba]
gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 283
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 199 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 258
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 259 IV---DGNFGIQITDI 271
>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
Length = 321
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ +P+ +Q++LG + + L++L+ G V+ LD R G VDI + + +G
Sbjct: 233 LRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285
>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
Length = 541
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS + + E+ DLI +IPV++ +LG + + L+ G V+ L VDI
Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
N + +A+GE+ E FG+++ EI+
Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535
>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
Length = 287
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
Lithuania75]
Length = 287
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
Length = 288
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 204 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 263
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 264 IV---DGNFGIQITDI 276
>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
Length = 290
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278
>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
Length = 287
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
Length = 99
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V + ++LG+C M I ++ LS+G +I LD + V + NN IA G + + D
Sbjct: 24 VTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKVLANNLPIANGVVLV---DRN 80
Query: 135 HFGVRVIEIL 144
V V E+L
Sbjct: 81 RIAVEVKEML 90
>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
Length = 287
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
Length = 290
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278
>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_AG0C1]
Length = 290
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278
>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
Length = 287
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
Length = 290
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278
>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
Length = 98
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LV+L + ++TLDKRV + VD+ + ++ +A+G++ +E E VR+ E
Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
Length = 515
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D
Sbjct: 448 IPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDD 504
Query: 135 HFGVRVIEILN 145
HFG+++ E++
Sbjct: 505 HFGIQMTELVR 515
>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
Length = 105
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L IPV + + + S + +S L++++ VI LDK GE +DI IN + E+ ++
Sbjct: 26 LFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVN 85
Query: 131 EDDTHFGVRVIEILNAQ 147
E +G+R+I N+Q
Sbjct: 86 E---KYGLRIIS-FNSQ 98
>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
Length = 290
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278
>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
Length = 287
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
16994]
gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
16994]
Length = 288
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E N LIM + + +++ +G M + +++++ G VI L++ + +DI +++ IA
Sbjct: 199 EGEMKNIGLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVIELNQLANDPLDILVDDHVIA 258
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
+GE+ I+ D +FGV++ I
Sbjct: 259 QGEVVIV---DGNFGVQITSI 276
>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
Length = 287
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
Length = 287
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275
>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 512
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV ++++ G+ +++ ++ + DV+ L + + E + + +N I KG I+ D
Sbjct: 444 DIPVTLEVVFGTAKVKLEKFISWCEKDVVILKESMNEPLVLALNGVTIGKG---ILVRVD 500
Query: 134 THFGVRVIEILN 145
HFG+++ E++
Sbjct: 501 DHFGIQMTELVR 512
>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 109
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ +L+K D++ N+ V+ LG M + ++ L +G ++ L K GESVD+ +
Sbjct: 13 ENEELLKKLEWYGDIMFNLDVE----LGRIAMTLREVLELKEGSIVELKKTAGESVDVMV 68
Query: 117 NNQKIAKGEITIME 130
N +A EI ++E
Sbjct: 69 NQCLLATAEIVVIE 82
>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
Length = 332
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E
Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296
Query: 112 VDITINNQKIAKGE 125
++ I+ + + +
Sbjct: 297 LETFIDGKPYFRAK 310
>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
Length = 332
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E
Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296
Query: 112 VDITINNQKIAKGE 125
++ I+ + + +
Sbjct: 297 LETFIDGKPYFRAK 310
>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
Length = 336
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E
Sbjct: 247 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 300
Query: 112 VDITINNQKIAKGE 125
++ I+ + + +
Sbjct: 301 LETFIDGKPYFRAK 314
>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 122
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++
Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+IE+
Sbjct: 103 D---KYGLRLIEV 112
>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
Length = 277
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++ ++ ++++ + N LIM++ + + + +GS M + +++ + G VI L++ +
Sbjct: 177 AQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLAND 236
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++I I+++ +A GE+ I+ D +FG+++ +I
Sbjct: 237 PLEILISDKVVALGEVVIV---DGNFGIQITQI 266
>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
Length = 103
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I
Sbjct: 29 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQI 80
>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
Length = 309
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++ I +++ + L S M++ + L G +I DK ES+D+ + +IA+GE + +
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283
Query: 132 DDTHFGVRVIEIL 144
FG+RV +L
Sbjct: 284 ---KFGMRVTNVL 293
>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
K31]
Length = 83
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I
Sbjct: 9 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60
>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 121
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++ E
Sbjct: 46 IPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102
Query: 135 HFGVRVIEILNA 146
+G+R+I+++ +
Sbjct: 103 KYGLRLIDVVES 114
>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
Length = 85
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
I V++ I LG + ++ L L D++TLD+ + + V+I + ++ IA+GE+ +E D
Sbjct: 12 QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71
Query: 134 THFGVRVI 141
VR++
Sbjct: 72 NRLCVRIL 79
>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 502
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ +
Sbjct: 435 IPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVND 491
Query: 135 HFGVRVIEILN 145
HFG+++ E++
Sbjct: 492 HFGIQMTELVR 502
>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 462
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I +IP+ + +G M + LV L G+++ L+ + +D+ +N +++A+GE+ + +
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452
Query: 132 DDTHFGVRVIEI 143
GVRV+EI
Sbjct: 453 ---ALGVRVLEI 461
>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
Length = 83
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I
Sbjct: 9 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60
>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 87
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI NI + + I L S L+NL +GD+I L+K + + V+I N+K+ GE+ +
Sbjct: 16 LIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKVGFGELVNVN 75
Query: 131 EDDTHFGVRVIEIL 144
E +GVR+++++
Sbjct: 76 E---KYGVRLVDLI 86
>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
Length = 110
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++P+ + + + S + + L +GDV+ LDK GE++D+ +N AK E+ ++E
Sbjct: 35 FFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVE 94
Query: 131 EDDTHFGVRVIE 142
+G++ +
Sbjct: 95 ---GQYGLKFAQ 103
>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
Length = 321
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S ++ + I +PV++ ++ S M ++ ++ L GD++ + R+ E D+ IN QK+ +
Sbjct: 243 QSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM--RLLERCDVQINQQKLFR 300
Query: 124 GEITIMEEDDTHF 136
G I E+D + F
Sbjct: 301 G--AIFEDDGSLF 311
>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 121
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + IPV + + + S + + L+ +G VI LDK GE +D+ +N +
Sbjct: 36 SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++ E +G+R+I+++ +
Sbjct: 96 EVVVINE---KYGLRLIDVVES 114
>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
Length = 292
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 56 SDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++S+ LE+ N +++++I + +++ +G M + ++V++ G VI L++ V + ++I
Sbjct: 194 TESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVIELNQMVNDPLEI 253
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++++ IAKGE+ I+ D +FG+++ +I
Sbjct: 254 LVDDKVIAKGEVVIV---DGNFGIQITDI 279
>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
Length = 133
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L IPV + + + S + ++ L+ + VI LDK GE +DI +N K E ++
Sbjct: 54 LFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVL- 112
Query: 131 EDDTHFGVRVIEI 143
+ +G+R++E
Sbjct: 113 --NDKYGLRILEF 123
>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
[Campylobacter curvus 525.92]
Length = 286
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +LIM++ + +++ +GS M + +++++ G VI L++ + ++I I ++ IA GE+
Sbjct: 203 NINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVV 262
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 263 II---DGNFGIQITQI 275
>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
Length = 97
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E+DD
Sbjct: 20 SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARG--MLEEKDD 77
Query: 134 THFG---VRVIEILNAQ 147
G VR+ E+++ +
Sbjct: 78 DQSGQLIVRLTEVIDLK 94
>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
Length = 330
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 58 SNNILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
S+++ E+S D+ ++ N +PVK I++GS + + L+ L+ GDVI L++R+ E
Sbjct: 236 SSSVKERSKDSALVLKNRIENAMVPVK--ILIGSTVITVRELLELAPGDVIPLERRLDED 293
Query: 112 VDITINNQKIAKGE 125
+++ I + +G+
Sbjct: 294 LEVVIGQKPKFRGK 307
>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 83
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
V++ ++LG + +S L+ + +G VI LD + V I NN +A+G I I E+
Sbjct: 9 VELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEIRED 63
>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
Length = 327
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK +LG+ + +S+ NL GD+I +DK+V + +++ + N K K E+
Sbjct: 258 IPVKA--VLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYED--- 312
Query: 135 HFGVRVIEILNAQ 147
+ VRV E++ +
Sbjct: 313 KYAVRVTEVIRKE 325
>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
SL003B-26A1]
gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
gilvum SL003B-26A1]
Length = 88
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
FD I V + ++LG+ M + L+ + +G VI LD + V I NN +AKG++
Sbjct: 3 TFD---EISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVV 59
Query: 128 IMEEDDTHFGVRVIEIL 144
++ E GV + E+L
Sbjct: 60 LLGE---RIGVSITEVL 73
>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 353
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 53 PISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
P + D N+++ + + + DL + ++P+ + LGS + ++ L ++ G ++ L
Sbjct: 260 PYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAH 319
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ VD+ +N +++ +GE+ + + GVR++
Sbjct: 320 DEVDLMVNGRRVGRGELVTIGDG---LGVRLL 348
>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris HaA2]
Length = 80
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
N+ V + ++LG+ M I ++ LS+G +I LD + V I NN +A G + + D
Sbjct: 6 NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV---DR 62
Query: 134 THFGVRVIEILN 145
V V ++L
Sbjct: 63 NRIAVEVKQMLT 74
>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
Length = 278
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N ++I+++ + +++ +G M + +++ + G VI L++ + +DI ++++ IAKGE+
Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLDILVDDKVIAKGEVV 253
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITDI 266
>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
Length = 88
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
I V + ++LG M + L+ + +G VI LD E V I NN +AKG++ ++ E
Sbjct: 7 IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63
Query: 135 HFGVRVIEIL 144
G+ + E+L
Sbjct: 64 RIGISITEVL 73
>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
Length = 295
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I +PV+ + L S ++++ L+++ G +IT DK + +++ INNQ GE + E
Sbjct: 214 ISKLPVQAIVKLASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE 273
Query: 132 DDTHFGVRV 140
HFG+++
Sbjct: 274 ---HFGLKI 279
>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
Length = 329
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK +LG+ + +++ +NL+ GD+I LD++V E +D+ + N I K DD
Sbjct: 260 IPVKA--VLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGN--IHKFTALPGSADD- 314
Query: 135 HFGVRVIEILNAQ 147
++ VR+ +L +
Sbjct: 315 NYAVRITNVLRGE 327
>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
Length = 122
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++
Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+I++
Sbjct: 103 D---KYGLRLIDV 112
>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
Length = 301
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D + +I V++ LG + + ++ G V+ LD++ + VD+ +N + A G T++
Sbjct: 211 DALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLRFASG--TLV 268
Query: 130 EEDDTHFGVRVIEI 143
DD + +R+ E+
Sbjct: 269 LTDDGEWALRLAEV 282
>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
Length = 277
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N LIM++ + + + +GS M + +++ + G VI L++ + ++I I+++ +A GE+
Sbjct: 194 NIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILISDKVVALGEVV 253
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITQI 266
>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
98-5491]
gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
Length = 285
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ +++++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+
Sbjct: 202 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 261
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ EI
Sbjct: 262 IV---DGNFGIQITEI 274
>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 83
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V++ ++LG + + L+ + +G VI LD + V I NN +A+GEI I
Sbjct: 9 VEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60
>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 518
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+EPI + +T+ +I +IP+ +++I G+ +++++ + + D++ L + +
Sbjct: 427 AEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITWCEKDIVILKESYEQ 486
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ + N I G T++ +D HFG+++ E+
Sbjct: 487 PLSLLANGIHIGSG--TLVRVND-HFGIKITEL 516
>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
Length = 88
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
FD +I V + ++LG M + L+ + +G VI LD + V I NN +A+G++T
Sbjct: 3 RFD---DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVT 59
Query: 128 IM 129
++
Sbjct: 60 VV 61
>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 105
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V++ ++LG + I + + +G VI LD + V I NN IA+GEI I
Sbjct: 31 VQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGEIII 84
>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
Length = 128
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++ V + LG ++ ++NL G V+ ++K G+++++ IN+ K A+GEI I+
Sbjct: 49 IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIV-- 106
Query: 132 DDTHFGVRV 140
+ F VR+
Sbjct: 107 -NDKFAVRI 114
>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisA53]
Length = 82
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S FD + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G
Sbjct: 2 SVPTFD---KVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASG 58
Query: 125 EITI 128
+ +
Sbjct: 59 MVLV 62
>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
Length = 279
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +++++ +++++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+
Sbjct: 196 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 255
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ EI
Sbjct: 256 IV---DGNFGIQITEI 268
>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 229
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L +PV + IL + + L + +G+VI L+ + E ++I NN +IA+G++ ME
Sbjct: 154 LCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGME 213
Query: 131 EDDTHFGVRVIEILNAQ 147
+ GV + ++ ++
Sbjct: 214 --NGALGVELTQLYQSK 228
>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
CGA009]
gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris TIE-1]
gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
Length = 80
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + D
Sbjct: 9 VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV---DRNRI 65
Query: 137 GVRVIEIL 144
V V ++L
Sbjct: 66 AVEVKQML 73
>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
Length = 547
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ E + I +N+ +A GE+ + D FGV+V + L
Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNV---DGFFGVKVTKTL 547
>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
Length = 101
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V + ++LG M I L+ + +G VI LD + VDI N+ IA+G+I +
Sbjct: 9 VDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60
>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
Length = 97
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E D
Sbjct: 20 SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQ 79
Query: 134 T-HFGVRVIEILN 145
+ VR+ E+++
Sbjct: 80 SGQLIVRLTEVID 92
>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
Length = 548
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 457 VVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544
>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
HTCC2601]
gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
Length = 95
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G + +L+ L G V+TLDKR+ + V++ + ++ I G + +++ ++
Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78
Query: 134 THFGVRVIEILN 145
VR+ E+++
Sbjct: 79 GQLAVRLTEVVD 90
>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
harveyi ATCC BAA-1116]
gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
Length = 122
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++
Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+I +
Sbjct: 103 D---KYGLRLINV 112
>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 80
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + +
Sbjct: 9 VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60
>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
51449]
gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
Length = 278
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N ++I+++ + +++ +G M + +++ + G VI L++ + ++I ++++ IAKGE+
Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDDKVIAKGEVV 253
Query: 128 IMEEDDTHFGVRVIEI 143
I+ D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITDI 266
>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
Length = 327
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+++PVK ILG C + +S+ V+L GD+I LD RV + + + N
Sbjct: 256 VDVPVKA--ILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGN 299
>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
Length = 331
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
LE S + MN+ + M ++LGS + I + LS GDVITLD V + + N+
Sbjct: 243 LEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKVVVGNEP 302
Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
G + ++ GV++++I++
Sbjct: 303 YLLGRPGTIGKNR---GVQILDIID 324
>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
MCS10]
Length = 99
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
I ++ V++ ++LG M I + + +G VI LD + V I NN IA+G++ I
Sbjct: 21 ISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVVI 77
>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
Length = 332
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+LG + + + LS GDV+ LD ++ + + I + NQ A G+ ++ D + G++++
Sbjct: 265 VLGGAKITVEEFLRLSLGDVLILDNQIDKPISINVENQLYAYGKPGVV---DKNMGIQIL 321
Query: 142 EILN 145
+IL+
Sbjct: 322 DILD 325
>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
KBAB4]
gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
Length = 548
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544
>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 545
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 515 PIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB5]
Length = 80
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+ V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + D
Sbjct: 6 KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV---DR 62
Query: 134 THFGVRVIEILN 145
V V ++L
Sbjct: 63 NRIAVEVKQMLT 74
>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
Length = 122
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++
Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVI- 101
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+I +
Sbjct: 102 --NDKYGLRLINV 112
>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
Length = 330
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
IP+ +Q LGS + + +L+ GDVI LDKR E V++ I+ + KG
Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305
>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 80
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ + + + +G + ++ ++ L +GD+I DK++ + +D+ +N QK GE+ I+ +
Sbjct: 13 DVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIVND-- 70
Query: 134 THFGVRVIEI 143
+ +R++++
Sbjct: 71 -KYSLRLVDL 79
>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
Length = 326
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+S+P D L ++I +I V++ +LG + I ++ + GDVI L +R
Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284
Query: 109 GESVDITINNQKIAKG 124
E VD+ + AKG
Sbjct: 285 DEEVDLLVEGNLFAKG 300
>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
Length = 348
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
I V+++ ++G +++S ++ L GDVI L++RV + V + I ++ + I
Sbjct: 263 KIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IPGRSG 319
Query: 134 THFGVRVIEIL 144
H +R++E++
Sbjct: 320 KHRALRILEVV 330
>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
Length = 330
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
IP+ +Q LGS + + +L+ GDVI LDKR E V++ I+ + KG
Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305
>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
Length = 323
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D ++EK ++ +PV++ +G + + + + L GDVITL+K VGE +++ +
Sbjct: 245 DYRTVVEK------ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYV 298
Query: 117 NNQ 119
+
Sbjct: 299 DGH 301
>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 318
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 227 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 286
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 287 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 314
>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
Length = 331
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
LE+S + MN+ + M+ +LGS + + + LS GDV+TLD V + + NQ
Sbjct: 243 LEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKMMVGNQP 302
Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
+ M ++ GV++++I++
Sbjct: 303 YLLAKPGTMGKNR---GVQILDIID 324
>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
Length = 54
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M+E+ FG+ + EI
Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDEN---FGIVISEI 53
>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
14863]
gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 227
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++++I + + + LG + + ++++ G VITLD+ E +++ +N E+ +
Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208
Query: 131 EDDTHFGVRVIE 142
E +G+R++E
Sbjct: 209 E---KYGIRIVE 217
>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
Length = 333
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+P+ ++ LG + + +NL +GDVITL+K VGE ++I + N+
Sbjct: 258 QLPIAVE--LGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNK 301
>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
Length = 546
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
Length = 548
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 519 IQIYVNDVLVAYGELVNV---DGFFGVKV 544
>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 308
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ P+ ++ +LG M++ + L GDVI LD RVG + + + N+
Sbjct: 238 VQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNK 285
>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
Length = 544
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540
>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
Length = 547
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
Length = 318
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P++SD+ + E DL N+ +K++ LGS + ++ L +++G L + V
Sbjct: 221 PMTSDTQHTPEPLDAPSDL-GNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPV 279
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +N Q +A+ E+ E D G RV+ +
Sbjct: 280 AMKVNGQTLARCELV---EIDGRLGARVVRL 307
>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 545
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 546
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
Length = 545
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
Length = 546
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 544
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540
>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
Length = 547
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
Length = 545
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 545
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
Length = 545
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541
>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
Length = 546
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 546
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
Length = 546
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
Length = 546
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 546
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
Length = 329
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++ N +LIM+I + ++I +G M I ++++L G +I LDK + E +DI +N
Sbjct: 241 EAPKNLNLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVN 294
>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
Length = 546
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
[Bacillus anthracis str. A2012]
gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
Ames]
gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
Sterne]
gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
Length = 546
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
stutzeri DSM 4166]
Length = 279
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D I ++PV++ ++ + M ++ ++ L D++ L R + ++ IN QK+ +G TI
Sbjct: 207 DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQKLFRG--TIF 262
Query: 130 EEDDTHFGVRVIEILNAQ 147
EED F + +E +N Q
Sbjct: 263 EEDGALF-LTSLESVNPQ 279
>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 547
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
Length = 546
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 546
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
Length = 547
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 546
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
Length = 547
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
Length = 547
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 456 VVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
Length = 80
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 6 NVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60
>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
Length = 95
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
++P+++ + +G + L+ L++G V+ LDK++ + V++ + + I G + ++E D
Sbjct: 18 SVPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDG 77
Query: 133 DTHFGVRVIEILNAQ 147
VR+ E+++ Q
Sbjct: 78 QGQLAVRLTEVVDLQ 92
>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
Length = 252
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
G M + +++ L G V+ LD+ + + V++ ++ + IA+G + ++ D ++G+RV E
Sbjct: 189 FGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVV---DGNYGLRVAE 245
Query: 143 I 143
+
Sbjct: 246 V 246
>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
Length = 320
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ N+PV + + S ++ S+LV+L GDVI L R+ E +DI + A
Sbjct: 244 LQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFA 294
>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
Length = 325
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ S+++N+ +S N + I IP++ ++ G +++ L +LS+G +I L V V
Sbjct: 212 MYSETDNLANQSLTNLEEI-QIPIRFEV--GRQYIELQALTHLSEGSLIDLAVPVNGDVR 268
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I N Q + G++ E G++V+E+
Sbjct: 269 IIANQQPLGTGQLV---EIQGRLGIKVVELF 296
>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
Length = 336
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
S D+F L M +P+ +++ G + + L +L G V+TLD D+ IA+
Sbjct: 254 ASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQ 312
Query: 124 GEITIME 130
GE+ +E
Sbjct: 313 GELVDVE 319
>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
Length = 79
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+ ++ VK+ +G ++ L +GD+I LDK + + V++ + +Q A GE+ +
Sbjct: 9 FLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVAN 68
Query: 131 EDDTHFGVRVIEI 143
E +G+RV+++
Sbjct: 69 EK---YGIRVVDL 78
>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
Length = 547
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 456 VVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543
>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
Length = 80
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 6 NVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60
>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 134
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV + I L + I L+ KG ++ L+ + + ++I INN IA GE+ + ++
Sbjct: 63 IPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVV---NND 119
Query: 135 HFGVRVIEIL 144
+GV++ ++L
Sbjct: 120 CYGVQITKLL 129
>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 87
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
+NIP+ ++ L S L+NL +GD+I L+K + + V+I +N+K GE+ +
Sbjct: 20 INIPIVIE--LASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGELVNV--- 74
Query: 133 DTHFGVRVIEIL 144
+ +G R+++++
Sbjct: 75 NGKYGARLVDLI 86
>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
Length = 327
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
V ++ LG+ M++ + ++L +GD++TLDK+V + + + IN
Sbjct: 262 VYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFING 303
>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
Length = 548
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 519 IRIYVNDVLVAYGELVNV---DGFFGVKV 544
>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
Length = 546
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 123
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 63 EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
E +T DL +IPV + + + S + + +L+ +G VI L+K GE +D+ +N
Sbjct: 34 EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93
Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143
+ E+ ++ + +G+R+I++
Sbjct: 94 MGHAEVVVV---NDKYGLRLIDV 113
>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 123
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+IPV + + + S + + +L+ +G VI L+K GE +D+ +N + E+ ++
Sbjct: 44 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVN 103
Query: 131 EDDTHFGVRVIEI 143
+ +G+R+I++
Sbjct: 104 D---KYGLRLIDV 113
>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
Length = 546
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
Length = 546
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
Length = 546
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
Length = 546
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 546
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
Length = 546
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ I +N+ +A GE+ + D FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542
>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 80
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I +NN IA G + +
Sbjct: 7 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60
>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 123
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 63 EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
E +T DL +IPV + + + S + + +L+ +G VI L+K GE +D+ +N
Sbjct: 34 EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93
Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143
+ E+ ++ + +G+R+I++
Sbjct: 94 MGHAEVVVV---NDKYGLRLIDV 113
>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
Length = 548
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + D FGV++
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKM 544
>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
Length = 304
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
VDN+ P + ++ + + FD +PV ++ +L + ++ L NL G V L +
Sbjct: 204 VDNVIAPSNEETQP--QHTLPLFDW-SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260
Query: 107 RVGESVDITINNQKIAKGEITIMEED 132
V +++ I +N Q + GE+ +E++
Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE 286
>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
Length = 327
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129
LI + M+ +LG + + + VNL GD+I LD++V + +++ + N +K A +
Sbjct: 252 LIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFAA--LPGY 309
Query: 130 EEDDTHFGVRVIEILNAQ 147
ED + +R+ E++ +
Sbjct: 310 SED--KYAIRITEVIKEE 325
>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
Length = 325
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
IPVK +LG + ++ L+N+ KGD+I LD+++ + + + + N K
Sbjct: 258 IPVKA--VLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIK 301
>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 325
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+++IP+KM L + +S L+ L +GDV + ++G+ V++ ++ + GE+
Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGEM 308
>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
Length = 78
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NIP+++ LG I++L+++ KG V L+ V V ITI+ + I GE I+ +D
Sbjct: 6 NIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63
Query: 134 THF 136
F
Sbjct: 64 KMF 66
>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
Length = 323
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ ++N+ V +Q+ LG + + +L+NL GD + LD +V + +D+ I ++
Sbjct: 249 YQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQ 300
>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 329
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 34/50 (68%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
D I N V +++++G+ + + +L++ KGDVI ++KR + +++ IN++
Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDE 299
>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
ATCC 49814]
Length = 80
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ +++ ++LG + + L+ + +G VI LD + V I NN IA+GE+ I
Sbjct: 4 VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVI 57
>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
ferrodiazotrophum]
Length = 341
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-----SDSNNIL 62
+SYI+ + NP Q + + SPT L + D+D P+ S I
Sbjct: 180 VSYIRSEI--------NP-QFSAIVSPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIK 230
Query: 63 EK-----STDNFDL-----------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
EK +D +++ I ++P+K+ LG+ ++S ++ GD+ITLD+
Sbjct: 231 EKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQ 290
Query: 107 RVGESVDITINN 118
V + + IT+
Sbjct: 291 YVDDPIKITVEK 302
>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
Length = 80
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 9 VDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60
>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
Length = 332
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+ Q LGS + + + L GD+I LDK E VDI I+ + +G I +
Sbjct: 260 IPLTAQ--LGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314
Query: 135 HFGVRVIEIL 144
+ VR+ E++
Sbjct: 315 KYSVRITEVI 324
>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
Length = 331
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
LE+S + MNI + M +LGS + + + LS GDV+TLD V + + ++
Sbjct: 243 LEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKMMVGDKP 302
Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
G+ I+ ++ GV++++I++
Sbjct: 303 YLLGKPGIIGKNR---GVQILDIID 324
>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 344
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 257 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 316
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 317 VNGRRIGRGELVSIGDG---LGVRLL 339
>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 328
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
IP+K +++G + + +L+ LS GDVI L++ + + +DI I N+
Sbjct: 258 TIPIK--VVMGKTVITVRDLLALSVGDVIPLNRNISQELDIVIGNR 301
>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
Length = 332
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
I PV++ ++G + + +L+ L GDV+ L +RV + +D+ +++Q K + ++
Sbjct: 255 IERAPVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVL 312
>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
Length = 123
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
IPV + + + S + + L+ +G VI LDK GE +D+ +N + EI I+
Sbjct: 43 FFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVN 102
Query: 131 EDDTHFGVRVIEILNA 146
+ +G+ + ++L++
Sbjct: 103 D---KYGLHLTDVLSS 115
>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
Length = 325
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ +LGS +Q+ + + +GDVI LD+RV + + + + + K + + +
Sbjct: 256 VELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSK------ 309
Query: 137 GVRVIEILNAQ 147
G R ++ L+A+
Sbjct: 310 GRRAVQFLHAE 320
>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 301
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296
>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 301
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296
>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
Length = 96
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ +P+++ I++G + L+ L + V+ LD+ V + V++ + ++ IA+GE+
Sbjct: 17 LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGEL 71
>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 351
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346
>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
Length = 333
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 63 EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
EK TD+ D + + PV M+++LG M + N + L GD+I LD + + + +++
Sbjct: 243 EKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302
>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 546
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + + FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 542
>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 351
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346
>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
Length = 545
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
E + I +N+ +A GE+ + + FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 541
>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 351
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346
>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 351
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
+N ++I +GE+ + + GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346
>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
Length = 331
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 63 EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
EK TD+ D + + PV M+++LG M + N + L GD+I LD + + + +++
Sbjct: 242 EKETDHTDSGKIEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301
>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
Length = 332
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
I + V +++ LG + + L+ L KGDVI L + + E +DI + K G
Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAG 305
>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
hamburgensis X14]
Length = 87
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + +
Sbjct: 14 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67
>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 405
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
VS P +++++ + D + + DS+N+ E + +P+ + I GS M
Sbjct: 279 TVSMPATATDIMLADPNSDTSAFEFTLDSDNVTES-------LPPLPITLHIRCGSLTMT 331
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++ L +L+ G V+TL V + + +A G++ +E
Sbjct: 332 LAELQHLASGSVLTLRDVVPGQAWLYHGDIALASGDLVDVE 372
>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
Length = 311
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++++ + E + + + E +FD + + VK+ +LG + + L ++ G V +L
Sbjct: 207 DNIEEVEETVPTLDEVLPENLPSHFD-VTKLTVKLTFVLGHSEIPLEELAHIQPGAVYSL 265
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + N Q +A+GE+ + DD G+ V +
Sbjct: 266 GADKDREVKVYANKQLVAEGELVYI-GDDEELGLEVTRL 303
>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
Length = 326
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
IP++ +LG + +++ VNL GDV+ L+ +V + +D+ + N K K
Sbjct: 258 IPIRA--VLGKSVVSVNDFVNLQPGDVVRLNAKVDDELDVFVGNMKKFKA 305
>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
1313]
Length = 328
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
V ++ ILG +Q+++ + L GDVITLD V ++D+ + +
Sbjct: 259 VPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGD 300
>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 332
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+ Q LGS + + ++ GD+I LDK E VDI I+ + +G I +
Sbjct: 260 IPLTAQ--LGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314
Query: 135 HFGVRVIEIL 144
+ VR+ E++
Sbjct: 315 KYSVRITEVI 324
>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
Length = 331
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
N+ +++ +G + + ++L GDVI LDK + VD+ + ++ KG IM + +
Sbjct: 256 NVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGKRN 312
Query: 134 THFGVRV 140
F VR+
Sbjct: 313 GRFAVRI 319
>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
Length = 329
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+MN V++ +LG + +L++L GD + LD+ E + + + K+ KG++ +
Sbjct: 255 LMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGV 311
>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
Length = 331
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 58 SNNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
SN E++T+ + + N V + ++LG + +S L++L GDVI LD R ++
Sbjct: 235 SNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELE 294
Query: 114 ITINNQ 119
+ I +
Sbjct: 295 VLIGQR 300
>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
Length = 315
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K + I+E S + +N L ++ + IP+ +++ILG +Q+ +L+N+ GD +
Sbjct: 224 KEVLKGITELRSPEVSNKLLQALEE------IPLNLEVILGRQKIQLGDLLNMKVGDTMI 277
Query: 104 LDKRVGESVDITINN 118
L K + E V++ ++
Sbjct: 278 LQKGLREPVEVRVSG 292
>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
Length = 78
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+++ LG I++L+++ KG V L+ V V ITI+ + I GE I+ +D
Sbjct: 6 SIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63
Query: 134 THF 136
F
Sbjct: 64 KMF 66
>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
Length = 331
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ ILG+ + + +NL+ GDV+TL ++ V + + ++ G+ ++ D +
Sbjct: 259 VELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVI---DKNM 315
Query: 137 GVRVIEILN 145
GV +++IL+
Sbjct: 316 GVEILDILD 324
>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
Length = 332
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
KS + L IP+ + LGS + I +NL GD ITLDK V E + + + ++
Sbjct: 249 KSIEKRILTAQIPIVAE--LGSSELTIEEFLNLEIGDCITLDKSVAEPLTVLVGDK 302
>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
Length = 335
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S N L K +N + IP++ ILG + I + + LS GD+I LD ESVD N
Sbjct: 250 SFNTLRKRIEN----VQIPIRA--ILGESTISIGDFMQLSPGDIIQLD----ESVD---N 296
Query: 118 NQKIAKGEIT 127
+ K+ G+IT
Sbjct: 297 HIKVMVGDIT 306
>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
Length = 78
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
IP+++ LG + +L+++ KG V L+ G V ITI+ + I GEI
Sbjct: 6 TIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEI 58
>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 83
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ L+ ++ V++++ L + L+N+ +GD+I L+K + + + + + N A G
Sbjct: 3 TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62
Query: 125 EITIMEEDDTHFGVRVIEIL 144
E+T + E +G+R+++++
Sbjct: 63 EMTNINE---KYGIRIVDLI 79
>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 97
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + +
Sbjct: 24 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77
>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
Length = 334
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ +G + +++L+ L GDVI LDK+ E VDI I +G + + H
Sbjct: 258 PLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGV---SNKH 314
Query: 136 FGVRVIEILN 145
V++ ++++
Sbjct: 315 MAVKITDVIS 324
>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
Length = 64
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D HFG+
Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGI 57
Query: 139 RVIEILN 145
++ E++
Sbjct: 58 QMTELVR 64
>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 82
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++PV +++ L M +++ L +G VI + GE++DI I GEI ++E
Sbjct: 12 DVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIE--- 68
Query: 134 THFGVRV 140
GVR+
Sbjct: 69 NTLGVRI 75
>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
Length = 78
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
NIP+++ LG + +L+++ KG V L+ V ITI+ + I GEI
Sbjct: 6 NIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEI 58
>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
Length = 372
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSK 98
ML Q + + ISS + + + D ++ + V + LG + ++ L L +
Sbjct: 228 MLEQMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQE 287
Query: 99 GDVITLDKRVGESVDITINNQK 120
GDVI LD+ + + + +N ++
Sbjct: 288 GDVIPLDRETDDPIKVFVNGEQ 309
>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
2228]
Length = 335
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
V++ +LGS + + + + L GDV+ LDK+V E+ ++ I +
Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR 302
>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
Length = 331
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
++ILG+ + + + +NL+ GDV+TL+++ + +++ I +
Sbjct: 262 EVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVVIEER 301
>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
[Chlamydophila pneumoniae LPCoLN]
Length = 371
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S + L+ G +++L VDI ++ K+ +GEI + + G+RV+E+
Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371
>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
Length = 327
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
G + + ++L GDV+ LD+R GE +D+ + K + + ++ H V++
Sbjct: 265 GETRLSVQEFLDLEVGDVLVLDRRFGEDLDVYVGKIKRYRAQPGLL---GRHLAVQI 318
>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
CWL029]
gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
pneumoniae]
gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
J138]
gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
Length = 371
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S + L+ G +++L VDI ++ K+ +GEI + + G+RV+E+
Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371
>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
Length = 367
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+ +
Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 310
>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
Length = 329
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+Q +LG M + +++L GD++TL +V + + + + + K GEI I++
Sbjct: 262 LQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIID 313
>gi|312971677|ref|ZP_07785852.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70]
gi|310336274|gb|EFQ01474.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70]
Length = 493
Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNI---SEPISSDSNNILEKSTDNFDLIMNIPVKM 79
D+P +D +S Q +D +++ S PI D NN ++ + + + + M
Sbjct: 274 DSPNEDNLISYVKEGLSNFSQTDDSNDLLAFSLPIKIDDNNWIDLTVAKVNTEIELTPDM 333
Query: 80 QIILGSCCMQISNLVN 95
QII S C+ I NL++
Sbjct: 334 QIIERSGCLSIGNLLD 349
>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
Length = 368
Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+ +
Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 311
>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
Length = 336
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
I +IPVK+ + + +S L ++++G V LD+ ++V+I + I +GEI ++
Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLD 324
Searching..................................................done
Results from round 2
>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 147
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN
Sbjct: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK
Sbjct: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IAKGEITIMEEDDTHFGVRVIEILNAQ
Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
Length = 366
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISE-PISSDS 58
+KK+ ++ + +E + P D T+ S PT+ ++ + ++ P+ +
Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266
Query: 59 NNILEKSTDN-------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
++ ++ L+ ++P+ + + LG + + ++ L G +I LDK GE
Sbjct: 267 FGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDKLTGEP 326
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +NN+ IA+GE+ +++E +FGVR+ EI+N +
Sbjct: 327 VDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359
>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
Length = 388
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNN 60
I++ SM P+Q+T P T Q ++S+P+ S
Sbjct: 238 IEEEPPKPSMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPA 297
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ E N +++++IP+ + + LG + ++ LS+G +I LDK GE VDI +NN+
Sbjct: 298 LQESEARNLNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRL 357
Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
IAKGE+ +++E +FGVR+ +I++
Sbjct: 358 IAKGEVVVIDE---NFGVRLTDIVS 379
>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + D + N + + + +P+S ++N + ++ D+I++IPVKM +
Sbjct: 23 DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN---STHNDIDMILDIPVKMTVE 79
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 80 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 136
Query: 143 ILNA 146
I+
Sbjct: 137 IITP 140
>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
Length = 137
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDMWAEALSEQKSTSGKSAADAMFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
Length = 137
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMGDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
Length = 134
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
Length = 137
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
Length = 137
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
Length = 134
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + + S + + + DLIM+IPVK
Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
Length = 137
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
Length = 134
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
Length = 137
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
Length = 376
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTD--NFDLIM 73
+ P ++TN + + + + N++ +P+ +T N +LIM
Sbjct: 239 STPQPVMAPARETNFAQAQQAAALPKTHQPLTNVTVQPVQFAPLKPTTPTTSDTNINLIM 298
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ + LG I ++ L G V+ LDK GE VDI +N + IAKGE+ +++E
Sbjct: 299 DVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKGEVVVIDE-- 356
Query: 134 THFGVRVIEILNA 146
+FGVR+ EI++
Sbjct: 357 -NFGVRITEIVSP 368
>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
EDL933]
gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4024]
gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14359]
gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
[Escherichia coli O157:H7 str. FRIK966]
gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
enabling rotation and determining its direction
[Escherichia coli O157:H7 str. EDL933]
gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
coli 55989]
gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
coli IAI1]
gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
coli ED1a]
gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. TW14359]
gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
coli W]
gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
74-1112]
gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC1212]
gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
G5101]
gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
LSU-61]
gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1044]
gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1125]
gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADTVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
E2348/69]
gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
[Escherichia coli O127:H6 str. E2348/69]
gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
coli IAI39]
gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
coli UMN026]
gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
NRG 857C]
gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
coli S88]
gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ +N S + + + DLIM+IPVK
Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ L+ GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. W3110]
gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
coli str. K12 substr. W3110]
gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
Length = 137
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
Length = 137
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALNEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
Length = 357
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
+KK+ ++ + K + + + S + + V +
Sbjct: 207 FVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAKPVQFEDFGKVPSAQE 266
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + L+ +IP+ + + LG + + ++ L G +I LDK GE VDI +NN+
Sbjct: 267 QTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKL 326
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 327 IARGEVVVIDE---NFGVRITEIVSPK 350
>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
493-89]
gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
H 2687]
Length = 137
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
Length = 134
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
Length = 138
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75
S ++P TN S +E L Q+ ++ S + +N + + + + +LIM+I
Sbjct: 2 SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDI 61
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + +
Sbjct: 62 PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118
Query: 136 FGVRVIEILNA 146
+G+R+ +I+
Sbjct: 119 YGIRITDIITP 129
>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
Length = 137
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
Length = 134
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
Length = 137
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
Length = 137
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSATDAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
Length = 138
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75
S ++P TN S +E L Q+ ++ S + N + + + D+IM+I
Sbjct: 2 SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSDIDMIMDI 61
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + +
Sbjct: 62 PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118
Query: 136 FGVRVIEILNA 146
+G+R+ +I+
Sbjct: 119 YGIRITDIITP 129
>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
Length = 151
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ D + N + + + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 28 MDDWAAALAEQNQQPVAAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 84
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 85 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141
Query: 146 A 146
Sbjct: 142 P 142
>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
2457T]
gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
Length = 137
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
Length = 144
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
++ L D + N + + + +P+S ++N + ++ D+I++IPVKM +
Sbjct: 18 ESSLDDWAAALAEQNDQPIASGAGGAGVFQPLSKAASNA---THNDIDMILDIPVKMTVE 74
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 75 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 131
Query: 143 ILNA 146
I+
Sbjct: 132 IITP 135
>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
Length = 432
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 9 SYIKDNLEGRSMHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKS 65
+Y + + S + P Q+ S + N+ S + ++ +
Sbjct: 287 AYSQPVMNQASSPQNYIPAQNQAQQSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHE 346
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N D++++IP+++ + LG + ++ LS G +I LDK GE VDI +NN+ IA+GE
Sbjct: 347 TKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGE 406
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++E +FGVRV +I++
Sbjct: 407 VVVIDE---NFGVRVTDIIS 423
>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
Length = 410
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI----SEPISSDSNNILEKSTDN 68
+ + P+Q P ++ + ++ S DSN I + N
Sbjct: 268 PSEQPVYQQQSAPMQQPIYQEPQQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARN 327
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+++++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ +
Sbjct: 328 LNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVV 387
Query: 129 MEEDDTHFGVRVIEILN 145
++E +FGVR+ ++L+
Sbjct: 388 IDE---NFGVRITDVLS 401
>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
WK1]
Length = 383
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
++ + Q T +P + +Q+ S + + E + N D++++IP+
Sbjct: 250 QTKPAPSSAQQTQKEAPQHFGTGAVQQPVNVQPVAFASFEPAPLPEAESRNLDMLLDIPL 309
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + LG + ++++LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FG
Sbjct: 310 QVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFG 366
Query: 138 VRVIEILN 145
VRV I++
Sbjct: 367 VRVTSIIS 374
>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
Length = 393
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
E S D P + IQ D + D+ + N +L+ ++
Sbjct: 264 EAASRSTDEPSAGRADKDRDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374
Query: 136 FGVRVIEILN 145
FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384
>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alkaliphilus oremlandii OhILAs]
Length = 385
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
KD + R M D P D + + + ++ + + + D +++ +N L
Sbjct: 247 KDTMHPREMSYDTPNYDHRANFSNEAAATRNEPVNIRPV-QFQAFDDDSVKGVMPENISL 305
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++P+K+ + LG +IS ++ G +I LDK VGE +DI +N Q +A GE+ +++E
Sbjct: 306 IQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVVIDE 365
Query: 132 DDTHFGVRVIEILNA 146
++G+RV +I+N
Sbjct: 366 ---NYGIRVTDIVNP 377
>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
Length = 163
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D + N + + + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 40 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153
Query: 146 A 146
Sbjct: 154 P 154
>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
Length = 411
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
+ M+ P+ P ++ + +V + + + ++ N +L+++IP
Sbjct: 278 QQPMYAQQPMYAQPPQGPNTYGQVPGRNVNVQPV-QFANFQGAPYVQADDTNLNLLLDIP 336
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F
Sbjct: 337 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 393
Query: 137 GVRVIEILN 145
GVRV +I++
Sbjct: 394 GVRVTDIVS 402
>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
Length = 163
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D + N + + + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 40 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153
Query: 146 A 146
Sbjct: 154 P 154
>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
Length = 124
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ D + N + + + P+S + + + ++ DLI++IPVKM + LG
Sbjct: 1 MDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVELGR 57
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 58 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114
Query: 146 A 146
Sbjct: 115 P 115
>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. C56-T3]
Length = 393
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
E S D P + IQ D + D+ + N +L+ ++
Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374
Query: 136 FGVRVIEILN 145
FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384
>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
Length = 365
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 10/154 (6%)
Query: 1 MIKKVSKISY---IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD 57
+KK+ + + ++ +E + +P+ N + + + ++KN V S
Sbjct: 208 FVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSF 267
Query: 58 SNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ KST D +++IP+ + + LG + + ++ LS G +I LDK GE VD
Sbjct: 268 ESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVD 327
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +N + IA+GE+ +++E +FGVR+ EI+ Q
Sbjct: 328 IIVNGKLIARGEVVVIDE---NFGVRITEIVTPQ 358
>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
Length = 408
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
Y + + M + + + + + + + E T N
Sbjct: 267 YGQGTAQYSGMETQTQRPAAQAAPQHLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNL 326
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+++++IP+++ + LG + +++ LS G +I LDK GE VDI +N++ IAKGE+ ++
Sbjct: 327 NMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVI 386
Query: 130 EEDDTHFGVRVIEILN 145
EE +FGVRV +I++
Sbjct: 387 EE---NFGVRVTDIIS 399
>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC61]
gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
Length = 393
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
E S D P + IQ D + D+ + N +L+ ++
Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374
Query: 136 FGVRVIEILN 145
FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384
>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 143
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ D+I++IPVKM +
Sbjct: 17 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 73
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 74 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130
Query: 143 ILNA 146
I+
Sbjct: 131 IITP 134
>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
Length = 143
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ DLI++IPVKM +
Sbjct: 17 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 73
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 74 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130
Query: 143 ILNA 146
I+
Sbjct: 131 IITP 134
>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
Length = 415
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
G+ P Q P + + + +V + + + + + +N +L+M+IP
Sbjct: 282 GQQAPYGYPPQGQPYGEPHHYGQAPGRNLNVQPV-QFANLGNPAFNQVDENNLNLLMDIP 340
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F
Sbjct: 341 LKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 397
Query: 137 GVRVIEILN 145
GVRV +I++
Sbjct: 398 GVRVTDIVS 406
>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
Length = 137
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN I++GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
Length = 376
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ P P + +K V S E N ++ ++P+ + +
Sbjct: 249 EQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQQEGPPGNIGMLYDVPLNVTVE 308
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + +++ L++G +I LDK GE VD+ +NN IA GE+ ++EE +FGVR+ E
Sbjct: 309 LGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEE---NFGVRITE 365
Query: 143 ILNAQ 147
I+N +
Sbjct: 366 IVNTK 370
>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulolyticum H10]
Length = 402
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 9 SYIKDNLEGRSM-HIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEK 64
SYI+ L+ I P+ ++ + + E Q+ V+ + + +
Sbjct: 260 SYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVT 319
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
N LIM++P+++ + LG I +++ G VI LDK GE VDI +N + IAKG
Sbjct: 320 EKKNISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKG 379
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ +++E FGVR+ +I++
Sbjct: 380 EVVVIDES---FGVRITDIIHP 398
>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
Length = 137
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI N IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
B7210]
gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
BCC215]
gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
Length = 162
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ DLI++IPVKM +
Sbjct: 36 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 92
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149
Query: 143 ILNA 146
I+
Sbjct: 150 IITP 153
>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
Length = 420
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ +SM P Q + P M + +V + + + S + +N +L+M+
Sbjct: 286 IPQQSMPYGQP-QTPYQAQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E
Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400
Query: 135 HFGVRVIEILN 145
+FGVRV +I++
Sbjct: 401 NFGVRVTDIVS 411
>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
Length = 161
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D L D + N + + + +P+S + + + ++ ++I++IPVKM +
Sbjct: 35 DQGLDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 91
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 92 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 148
Query: 143 ILNA 146
I+
Sbjct: 149 IITP 152
>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
Length = 157
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
D + + +Q + + + N L+ + ++ D I++I
Sbjct: 21 AEQSTAEATDDWGAAMAEQEATDTSALQSKNAEQTQVFTEFTAKNKLQDTQNDIDFILDI 80
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 81 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---K 137
Query: 136 FGVRVIEILNA 146
FG+R+ +I+
Sbjct: 138 FGIRLTDIITP 148
>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
Length = 375
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
K T N LIM++P+++ + LG I ++++L G VI LDK GE VDI +N
Sbjct: 283 PQRSGKDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNG 342
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 343 KLIAKGEVVVIDE---NFGVRITDIVSP 367
>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
Length = 287
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
G++ P P + + + + S DL++++P
Sbjct: 154 GQAATAGEPALRWE-PGPGFTAGAAFRPFPGAEGTAAAGPAGGDGAGPSRGTLDLVLDVP 212
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+++ + LG + ++ ++ G V+ LD+ GE VD+ +N + IA+GE+ +++E +F
Sbjct: 213 LQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDE---NF 269
Query: 137 GVRVIEILNA 146
G+R+ +I++
Sbjct: 270 GIRITDIVSP 279
>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
7894]
gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
K96243]
gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
Length = 165
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ DLI++IPVKM +
Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152
Query: 143 ILNA 146
I+
Sbjct: 153 IITP 156
>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
Length = 166
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D + N + + + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 43 LDDWAAALAEQNQQPVPAGATGAGVFQPLSKAAPS---STHNDIEMILDIPVKMTVELGR 99
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 100 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 156
Query: 146 A 146
Sbjct: 157 P 157
>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
35469]
gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
fergusonii ATCC 35469]
gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
Length = 137
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
Length = 394
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ +E IQ D +P + N +L+ ++P+++ + LG +
Sbjct: 282 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 335
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 336 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 385
>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
Length = 138
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ M N D ++S+ ++ + ++ + S + D+IM+
Sbjct: 1 MRNSPMSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMD 60
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ +
Sbjct: 61 IPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD--- 117
Query: 135 HFGVRVIEILNA 146
+GVR+ +I+
Sbjct: 118 KYGVRITDIITP 129
>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
Length = 393
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ +E IQ D +P + N +L+ ++P+++ + LG +
Sbjct: 281 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 334
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVR+ +I++
Sbjct: 335 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 384
>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
[Paenibacillus polymyxa SC2]
gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus polymyxa SC2]
Length = 437
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +
Sbjct: 343 QSGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMV 402
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NN+ IAKGE+ +++E +FGVRV +I++
Sbjct: 403 NNKLIAKGEVVVIDE---NFGVRVTDIVS 428
>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
Length = 436
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +
Sbjct: 342 QSGAFAQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILV 401
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NN+ IAKGE+ +++E +FGVRV +I++
Sbjct: 402 NNKLIAKGEVVVIDE---NFGVRVTDIVS 427
>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
Length = 172
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D + N + + + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 49 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 105
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 106 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162
Query: 146 A 146
Sbjct: 163 P 163
>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
Length = 163
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + D + N + + + +P+S + + + ++ ++I++IPVKM +
Sbjct: 37 DPGMDDWAAALAEQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 93
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 94 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 150
Query: 143 ILNA 146
I+
Sbjct: 151 IITP 154
>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
Length = 420
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ +SM P Q + P M + +V + + + S + +N +L+M+
Sbjct: 286 IPQQSMPYGQP-QMPYQTQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E
Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400
Query: 135 HFGVRVIEILN 145
+FGVRV +I++
Sbjct: 401 NFGVRVTDIVS 411
>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
Length = 157
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
+ D + N +Q + + + N L ++ ++ D I++IPV
Sbjct: 25 EQASSETAADDWGAAM--NEQAAALQDDKAEKAQVFTEFTAKNKLHETQNDIDFILDIPV 82
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG
Sbjct: 83 QLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 139
Query: 138 VRVIEILNA 146
+R+ +I+
Sbjct: 140 IRLTDIITP 148
>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
Length = 165
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ DLI++IPVKM +
Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ IN IA+GE+ ++ + FG+R+ +
Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVVND---KFGIRLTD 152
Query: 143 ILNA 146
I+
Sbjct: 153 IITP 156
>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 162
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + D + N + + + +P+S + + + ++ ++I++IPVKM +
Sbjct: 36 DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 92
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149
Query: 143 ILNA 146
I+
Sbjct: 150 IITP 153
>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
Length = 377
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 28/169 (16%)
Query: 2 IKKVSKISYIKDNLEG-----------RSMHIDNPLQDTNVSSP------TNNSEMLIQK 44
I ++ +++ KD ++ ++ + P+Q+ +P T E ++
Sbjct: 203 IMQLYPLTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKR 262
Query: 45 NDVDNISEPI--------SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+SEP+ S + N D++M+IP+ + + LG + ++ L
Sbjct: 263 QGTAKVSEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLEL 322
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
S G +I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+
Sbjct: 323 STGSIIELDKLAGEPVDILVNQRVVAKGEVVVIDE---NFGVRVTDILS 368
>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
Length = 165
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + D + N + + + P+S + + + ++ D+I++IPVKM +
Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 95
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152
Query: 143 ILNA 146
I+
Sbjct: 153 IITP 156
>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
Length = 407
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71
+ + +Q P ++ V+ ++ S DSN I + N ++
Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNM 327
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ +++E
Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387
Query: 132 DDTHFGVRVIEILN 145
+FGVR+ ++L+
Sbjct: 388 ---NFGVRITDVLS 398
>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
Length = 181
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++ +P++ + + ++ DLIM++PV++ + LG + I NL+ L +G V+ LD
Sbjct: 80 SVFKPLADAAGG----NGNDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLA 135
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +DI +N IA+GE+ ++EE +G+R+ +I+
Sbjct: 136 GEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 170
>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
++ E L K+ V + + E++ + D I++IP+++ LG
Sbjct: 57 EEEKNIKAEKRQEFLSSKSQVAEFKDLTHEAKSPRPEQTKRDLDFILDIPLEVSAELGRT 116
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I+ L+ L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++
Sbjct: 117 KLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 173
>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
Length = 410
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ ++ + + ++ N LIM++P+++ + LG I +++ G +I
Sbjct: 307 REPINVQPAQFQAFDDGMISFERKNIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIE 366
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK GE VDI +N + IAKGE+ +++E FGVR+ +I++
Sbjct: 367 LDKLAGEPVDILVNGKVIAKGEVVVIDES---FGVRITDIIHP 406
>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
Length = 137
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++N D N + +E L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNLADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 134
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L +K N S + + + DLIM+IPVK
Sbjct: 1 MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
Length = 164
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + D + N + + + +P+S + + + ++ ++I++IPVKM +
Sbjct: 38 DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 94
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 95 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 151
Query: 143 ILNA 146
I+
Sbjct: 152 IITP 155
>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
Length = 410
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72
E + P+++ + + +P S ++ + E +N +++
Sbjct: 272 EEERSVTEAPIREHAYAGGHERPSNPAPRTQQAVNVQPAVFSSFETTTVEESEPNNLNML 331
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IP+++ + LG + +++ LS G +I LDK GE VDI +NN+ IA+GE+ +++E
Sbjct: 332 LDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDES 391
Query: 133 DTHFGVRVIEILN 145
FGVRV +I++
Sbjct: 392 ---FGVRVTDIVS 401
>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
C3-41]
Length = 407
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71
+ + +Q P ++ V+ ++ S DSN I + N ++
Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNM 327
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ +++E
Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387
Query: 132 DDTHFGVRVIEILN 145
+FGVR+ ++L+
Sbjct: 388 ---NFGVRITDVLS 398
>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
Length = 421
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
+S D +Q + + + + V + + + ++ N +L+++IP
Sbjct: 291 QQSAAFDIQMQPQGPQTYGHAANRNVNVQPV----QFANFNQAPYVQTDETNLNLLLDIP 346
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F
Sbjct: 347 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 403
Query: 137 GVRVIEILN 145
GVRV +I++
Sbjct: 404 GVRVTDIVS 412
>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 137
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L +K N S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 136
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 8/136 (5%)
Query: 20 MHIDNPLQDTNVSSPT--------NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
MHID+PLQD + S + +ND+D+ SE ISS+SNNI EKS+DN DL
Sbjct: 1 MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+
Sbjct: 61 IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120
Query: 132 DDTHFGVRVIEILNAQ 147
DDTHFGVRVIE+LN++
Sbjct: 121 DDTHFGVRVIELLNSK 136
>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 134
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ N S + + + DLIM+IPVK
Sbjct: 1 MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 118 RITDIITP 125
>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 137
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ N S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
Length = 142
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
S +Q N + S N L ++ ++ D I++IPV++ + LG + I
Sbjct: 21 QSQAEQAEASALQDNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAI 80
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 81 KNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 133
>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
Length = 169
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D + N + ++ + +P+S + + + ++ ++I++IPVKM + LG
Sbjct: 46 LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 102
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD GE +D+ +N +A+GE+ ++ + FG+R+ +I+
Sbjct: 103 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDIIT 159
Query: 146 A 146
Sbjct: 160 P 160
>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
Length = 136
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVK 78
D+ ++S+ +E + ++ + ++P S + S + DLIM+IPVK
Sbjct: 3 DSKKPSDDISADDLWAEAMDEQAATSSAAKPGDNVFKSLEASAASGSLQDIDLIMDIPVK 62
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 63 LTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVVND---KYGV 119
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 120 RITDIITP 127
>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 137
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ N S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTNKSTADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
Length = 419
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
+SM P P M + +V + + + S + +N +L+M+IP
Sbjct: 287 PQSMPYGQPQMPYQG-HPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMDIP 344
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E +F
Sbjct: 345 LKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NF 401
Query: 137 GVRVIEILN 145
GVRV +I++
Sbjct: 402 GVRVTDIVS 410
>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
Length = 137
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
D + N + + + ++ D I++IPV++ + LG
Sbjct: 12 DDWGAAIAEQEQAEKAALNAQQAAPTVFQEFAGSSKLATHNDIDFILDIPVQLTVELGRT 71
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I++
Sbjct: 72 KIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIISP 128
>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
EO147]
gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
C6786]
Length = 162
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + D + N + + P+S + + ++ DLI++IPVKM +
Sbjct: 36 DAGMDDWAAALAEQNQLPIEPGATGAGVFRPLSKAAAA---STHNDIDLILDIPVKMTVE 92
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149
Query: 143 ILNA 146
I+
Sbjct: 150 IITP 153
>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
Length = 374
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 2 IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59
I ++ I++ KD + + P+QDT VS+P ++ + P +
Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262
Query: 60 NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ N D++M+IP+ + + LG + ++ LS G
Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+
Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365
>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
Length = 153
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E+L + + + S + + ++ +LI++IPV++ + LG + I N++ L+
Sbjct: 37 AEVLPSPDHGAPAAFANFTSSAGSVNQPGNDINLILDIPVQLTVELGRTRIPIKNILQLA 96
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 QGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 142
>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
Length = 166
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQII 82
P Q + + ++ L ++N + E + DLIM++PV+M +
Sbjct: 35 APTQADGLKPQDDWADALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVE 94
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ ++++ +G+R+ +
Sbjct: 95 LGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTD 151
Query: 143 ILNA 146
I+
Sbjct: 152 IITP 155
>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
Length = 149
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ Q +D S + ++ + ++ D+I++IPV++ + LG + I +++ L++G
Sbjct: 37 LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140
>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
6578]
Length = 350
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI------- 54
+ + + +++ + P + S+ + V P
Sbjct: 194 VIEFFDVPFVRSLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFP 253
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + + N L+M++ +++ + LG + ++ + +G +I LDK GE VDI
Sbjct: 254 SFPEGALGPEQQANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDI 313
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N++ IA+GE+ +++E +FGVRV EI++
Sbjct: 314 LVNHKLIARGEVVVIDE---NFGVRVTEIISP 342
>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
Length = 133
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M N D ++S+ ++ + ++ + ++ S + D+IM+IPVK+
Sbjct: 1 MSDTNKPSDDDISADDMWADAMNEQTKSPSTDGVFNTFEGGENNASLQDIDMIMDIPVKL 60
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR
Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117
Query: 140 VIEILNA 146
+ +I+
Sbjct: 118 ITDIITP 124
>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
Length = 137
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENSGALDDLWADALNEQKTTPGKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 137
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENSGALDDLWADALNEQKATPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 137
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENSGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
Length = 400
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
E Q++ V + + + N LIM++P+++ + LG I +++
Sbjct: 291 QEPQRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRTQKLIKDILEFG 350
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G VI LDK GE VDI +N + IAKGE+ +++E FGVR+ +I++
Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDES---FGVRITDIIHP 396
>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
Length = 193
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 109 PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 168
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 169 VVVNE---KFGIRLTDVISP 185
>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
Length = 180
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
+++S S + + N S + + + DLI++IPV
Sbjct: 46 AEQSTAEQSSTNSLASSGKESNTSVFGSQNANPSVFQEFSKDGESHGTRHDIDLILDIPV 105
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG
Sbjct: 106 QMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 162
Query: 138 VRVIEILNA 146
+R+ +I+
Sbjct: 163 IRLTDIITP 171
>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
Length = 133
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M N D ++S+ ++ + ++ + S + + D+IM+IPVK+
Sbjct: 1 MSDSNNPSDDDISADDMWADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKL 60
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR
Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117
Query: 140 VIEILNA 146
+ +I+
Sbjct: 118 ITDIITP 124
>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 137
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
Length = 144
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NF 69
R+ + + Q T+ ++ + +M + + +P S S I E +
Sbjct: 2 RNSPMSDAKQPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDI 61
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++
Sbjct: 62 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121
Query: 130 EEDDTHFGVRVIEILNA 146
+ +G+R+ +I+
Sbjct: 122 SD---KYGIRITDIITP 135
>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
Length = 155
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPV 77
+ P +D ++ + + N + + + + + D+IM+IPV
Sbjct: 21 AEQAATPAEDDPWAAALAEQAATLPEPATQNAGQNVFKPLGKSATAEGMRDLDMIMDIPV 80
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
K+ + LG + I L+ L++G V+ LD GE +DI IN IA+GE+ ++++ +G
Sbjct: 81 KLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVVDD---KYG 137
Query: 138 VRVIEILNA 146
+R+ EI+
Sbjct: 138 IRITEIITP 146
>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
Length = 137
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPSDANSGALDDLWADALNEQQAPASKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
Length = 415
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG S ++ +P P +S M+ + +V + + + + + N +L+++I
Sbjct: 284 EGGSAYLASPAYKE---EPAASSGMMQRNVNVQPV-QFSNLQAGGYAQADETNLNLLLDI 339
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+K+ + LG I +++ L +G ++ LDK GE VDI +NN+ IAKGE+ +++E +
Sbjct: 340 PLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDE---N 396
Query: 136 FGVRVIEILN 145
FGVRV +I++
Sbjct: 397 FGVRVTDIVS 406
>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
Length = 137
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
Length = 137
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
Length = 401
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 83/148 (56%), Gaps = 8/148 (5%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQ----DTNVSSPTNNSEMLIQKNDVDNISEPISSD 57
++ V ++S ++ + + + DN Q + S N++ + Q V S + +
Sbjct: 249 LEPVQRVSPVQPSYSQQDTYRDNTAQHVPQEKTQSQHFGNNKNVEQPVQVQPASF-TNFE 307
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++ + + N D++++IP+ + + LG + +++ LS G +I LDK GE VD+ +N
Sbjct: 308 QPSMSKPESKNLDMLLDIPLNVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVN 367
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ IAKGE+ +++E +FGVR+ +I++
Sbjct: 368 SRLIAKGEVVVIDE---NFGVRITDIVS 392
>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 137
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTTTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
Length = 163
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 26 LQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
L D + N + ++ + +P+S ++ + ++ D+I++IPVKM + LG
Sbjct: 39 LDDWAAALAEQNQQPAVEPGATGAGVFQPLSKAAST---STHNDIDMILDIPVKMTVELG 95
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 96 RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152
Query: 145 NA 146
Sbjct: 153 TP 154
>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
Length = 133
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M N D ++S+ ++ + ++ + S + D+IM+IPVK+
Sbjct: 1 MSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKL 60
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR
Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117
Query: 140 VIEILNA 146
+ +I+
Sbjct: 118 ITDIITP 124
>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 133
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M N D ++S+ ++ + ++ + S + D+IM+IPVK+
Sbjct: 1 MSESNNPSDDDISADDMWADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKL 60
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR
Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117
Query: 140 VIEILNA 146
+ +I+
Sbjct: 118 ITDIITP 124
>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
Length = 134
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
R + + D E + +I + + ++ + S + DLI++IPV
Sbjct: 1 RQQAVSDAQDDAADLWAEAMGEQQTAGQNNGDIFQNLD-ETPTLGAGSGQDIDLILDIPV 59
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
K+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+GE+ ++ + FG
Sbjct: 60 KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND---KFG 116
Query: 138 VRVIEILNA 146
VR+ +I+
Sbjct: 117 VRITDIITP 125
>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
BAA-895]
gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
Length = 137
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP + + ++ L ++ + S + + + DLIM+IPVK
Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTTSKSAADAVFQQLGGGDVSGNLQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 121 RITDIITP 128
>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 354
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ +++E +FGVRV +I++
Sbjct: 328 VVVIDE---NFGVRVTDIVSP 345
>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
Length = 137
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ + S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ I
Sbjct: 42 ETPTLGAGSGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N IA+GE+ ++ + FGVR+ +I+
Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128
>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
GMI1000]
gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
solanacearum GMI1000]
Length = 156
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 49 NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 147
>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
Length = 154
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE----KSTDNFDL 71
E ++ P ++ +S + + L ++ND +S + + + + ++ D+
Sbjct: 14 EESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDM 73
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 74 ILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 133
Query: 132 DDTHFGVRVIEILNA 146
FG+R+ +I+
Sbjct: 134 ---KFGIRLTDIITP 145
>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
Length = 175
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFD 70
+++L +M +D + ++ + Q + D + +P+ +++ + + D
Sbjct: 37 EEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPLDEGASST---TPRDLD 93
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LIM+IPVK+ + LG + I L+ L++G VI LD GE +DI IN IA+GE+ +++
Sbjct: 94 LIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVD 153
Query: 131 EDDTHFGVRVIEILNA 146
+ +G+R+ EI+
Sbjct: 154 D---KYGIRITEIITP 166
>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
Length = 136
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQ 80
D ++S+ + + N+ S P S++ + S + DLIM+IPVK+
Sbjct: 8 SDDDISADDLWAAAM---NEQAATSAPEQSEAVFKSLDGSGASGSLQDIDLIMDIPVKLT 64
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GVR+
Sbjct: 65 VELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRI 121
Query: 141 IEILNA 146
+I+
Sbjct: 122 TDIITP 127
>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 353
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ +++E +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344
>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
Length = 148
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
E + D + + K V + ++ D+I++I
Sbjct: 18 EQATAEASTGTDDWAAAMAEQEAPPAAGKAHV------FEKFGAAGSAATPNDLDMILDI 71
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ + LG M I NL+ L++G V+ L GE +D+ IN IA+GE+ ++ +
Sbjct: 72 PVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVVND---K 128
Query: 136 FGVRVIEILNA 146
G+R+ +I
Sbjct: 129 LGIRLTDITTP 139
>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
Length = 163
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 56 DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 154
>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
Length = 412
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S ++ ++ E N DL+M+IP+++ + LG I ++ L +G ++ LDK GE VDI
Sbjct: 316 SFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDI 375
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N + IAKGE+ +++E +FGVRV +I++
Sbjct: 376 LVNQRLIAKGEVVVIDE---NFGVRVTDIVS 403
>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
Length = 395
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
T+ + ++ +++ + + P + TDN DL++++ + + + LG
Sbjct: 276 TSQTEAAAGAQTVVKPVEFGPLHSPAAEAPR------TDNLDLLLDVSLTVSVELGRTHQ 329
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +++ S G V+ LD+ GE VDI +N + IAKGE+ +++E +FGVRV +I++ +
Sbjct: 330 SVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVIDE---NFGVRVTDIVHPR 385
>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
Length = 437
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 15 LEGRSMHIDNPLQDT-NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
++G P+Q P N +P ++D N I +K +N +LI
Sbjct: 311 MQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQK--ENIELIK 368
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ + LG I +++ + G ++ L+K GESVD+ +N + +AKGE+ ++EE
Sbjct: 369 DVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEES- 427
Query: 134 THFGVRVIEILN 145
FGVR+ EI+
Sbjct: 428 --FGVRITEIIK 437
>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
Length = 137
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS---SDSNNILEKSTDNFDLIMNIPVKM 79
+ P D + +E + ++ S I + + + + DLI++IPVK+
Sbjct: 5 NKPSADAQDDAADLWAEAMGEQQAASQHSGDIFQNLEEGATLGSSAGQDIDLILDIPVKL 64
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ LS+G V++LD GE +D+ IN IA+GE+ ++ + FGVR
Sbjct: 65 TVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVVND---KFGVR 121
Query: 140 VIEILNA 146
+ +I+
Sbjct: 122 ITDIITP 128
>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
Length = 141
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV M + LG + I NL+ L++G V+ LD GE +D+
Sbjct: 45 GASAPASTGAPQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVL 104
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA+GE+ ++ + FG+R+ +I+
Sbjct: 105 VNGCLIAQGEVVVVND---KFGIRLTDIITP 132
>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 143
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNIPVKMQIILG 84
+ D + S + V S N D+I++IPV++ + LG
Sbjct: 16 MDDWAAAMAEQESVEAQAEATVQPAHALFQEFGAAAASASVPQNLDMILDIPVQLTVELG 75
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 76 RTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 132
Query: 145 NA 146
Sbjct: 133 TP 134
>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 353
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ +++E +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344
>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
Length = 138
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILG 84
TN + +E L Q+ ++ S + + N + + + DLIM+IPV++ + LG
Sbjct: 11 STNHNDEDLWAEALEQQKQAESASAGMQNFENVDGQNPLNQFSDVDLIMDIPVRLSVELG 70
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I+
Sbjct: 71 RTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127
Query: 145 NA 146
Sbjct: 128 TP 129
>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
Length = 135
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76
D+ ++S+ +E + ++ V + S P + D + + S + DLIM+IP
Sbjct: 2 TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSGNVAGSLQDIDLIMDIP 59
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
VK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +
Sbjct: 60 VKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KY 116
Query: 137 GVRVIEILNA 146
GVR+ +I+
Sbjct: 117 GVRITDIITP 126
>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
19718]
Length = 157
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
P D + SP +S L + N++L + ++ D+I++IPV++ + LG
Sbjct: 30 PTTDDDNGSPPPSSAHLAGDSLTKPSPVFEQFSRNDVLNDTRNDIDMILDIPVQLTVELG 89
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ L+ GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 90 RTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVVNE---KFGIRLTDII 146
Query: 145 NA 146
Sbjct: 147 TP 148
>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
silvestris StLB046]
Length = 422
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++ S +S NI + N +++++IP+++ + LG + ++ LS G +I LDK GE
Sbjct: 322 AQFASFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGE 381
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
VDI +N++ IAKGE+ +++E +FGVR+ +IL+
Sbjct: 382 PVDILVNSRLIAKGEVVVIDE---NFGVRITDILS 413
>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
Length = 378
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
+ P P E + D N + S +N D++M+IP
Sbjct: 244 PQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAPVEFQAFDHNEAAQGSRNNLDMLMDIP 303
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE +F
Sbjct: 304 LSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NF 360
Query: 137 GVRVIEILN 145
GVRV +IL+
Sbjct: 361 GVRVTDILS 369
>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 145
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
+ +E + K+ V+N ++ I + D+ + L + + DLI++IPVK+ + LG M
Sbjct: 22 AMNEQQTTENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKM 81
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ +I+
Sbjct: 82 TIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDIITP 136
>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
Length = 132
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
DL++++P+++ + LG + L+ ++ G V+ LD+ GE VD+ +N + IA+GE+ +
Sbjct: 50 LDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVV 109
Query: 129 MEEDDTHFGVRVIEILNA 146
++E +FG+R+ +I++
Sbjct: 110 IDE---NFGIRITDIVSP 124
>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 375
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
I VD + + S DLI +IPV++ + LG I ++N+S G
Sbjct: 263 ASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPG 322
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GE VD+ +N + IA+GE+ +++E +FGVRV EI++
Sbjct: 323 SVVELNRMAGEPVDVLVNGKLIARGEVVVIDE---NFGVRVTEIVS 365
>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
Length = 151
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+D+ G +M ++ + + + + + + +S+D +I + ++ D
Sbjct: 13 EDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSAD--DIKTNTPNDIDF 70
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 71 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130
Query: 132 DDTHFGVRVIEILNA 146
FG+R+ +I+
Sbjct: 131 ---KFGIRLTDIITP 142
>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
Length = 374
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 2 IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59
I ++ I++ KD + + P+Q+ VS+P ++ + P +
Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262
Query: 60 NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ N D++M+IP+ + + LG + ++ LS G
Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+
Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365
>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CMR15]
Length = 158
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 51 NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 149
>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
Length = 117
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+D + L++ N D I++IP+++ + LG M I++L+ L +G V+ L+K GE ++I
Sbjct: 21 QADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEI 80
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA+GE+ ++ E FGVR+ +I++
Sbjct: 81 LVNRKLIARGEVVVVNE---KFGVRLTDIVSP 109
>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
95/1000]
gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
95/1000]
Length = 348
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 6 SKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
++ ++ L S N + +S NN++ + +S +
Sbjct: 204 FELPVLQAILSNASKTTSN--ANKTSASSNNNTQANDNGKQLGVQHAEFNSLMPASDVQG 261
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAKGE
Sbjct: 262 TGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGE 321
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ +++E +FGVRV +I++
Sbjct: 322 VVVIDE---NFGVRVTDIISP 339
>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
Length = 139
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIIL 83
++D ++ + D S + D ++ + ++ D I++IPV++ + L
Sbjct: 11 VEDDWGAAMAEQEQTEAAAIDAKPASATVFKDFAGGDLKTGTHNDIDFILDIPVQLTVEL 70
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I
Sbjct: 71 GRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDI 127
Query: 144 LNA 146
+
Sbjct: 128 ITP 130
>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 129
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 20 MHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
M P + S N E + ++ DN+ N++ +++ DLI++IPVK
Sbjct: 1 MSDTTPTSGADKQSIDNLWGEAMSEQQTADNM-----PAKENLVPNFSEDLDLILDIPVK 55
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
M + LG M I L+ LS+G V++L+ GE +DI IN IA+GE+ ++ + FG+
Sbjct: 56 MTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGI 112
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 113 RITDIITP 120
>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola sp. JR]
gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola potens JR]
Length = 412
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
N V + + K+ DLIM++P+++ + LG I ++NL+ G V+
Sbjct: 304 PANSVPVQPAQFAPLNMGFEPKTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVV 363
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK GE VD+ +N + +AKGE+ +++E +FG+R+ +I++
Sbjct: 364 ELDKLAGEPVDLMVNGKLLAKGEVVVIDE---NFGIRITDIVSP 404
>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
ictaluri 93-146]
Length = 137
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ + S + DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +D+ I
Sbjct: 42 ETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N IA+GE+ ++ + FGVR+ +I+
Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128
>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
Length = 136
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
D N + +E L ++ + S + + + DLIM+IPVK+ + L
Sbjct: 8 SDENGAMDDLWAEALNEQKTTGSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVEL 67
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I
Sbjct: 68 GRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDI 124
Query: 144 LNA 146
+
Sbjct: 125 ITP 127
>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 162
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISE-----PISSDSNNILEK 64
K E D P + + + +E L+++ D + P+S D+
Sbjct: 10 KTGWENAMASEDKPDEVQGAADDGMADWAEALLEQKSSDGAGDAAPGGPLSGDTPKPFTS 69
Query: 65 STD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
D + +++++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N
Sbjct: 70 GGDGHVNDINMVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYL 129
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++ + FG+R+ +++
Sbjct: 130 IAQGEVVVVND---KFGIRLTDVVTP 152
>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
Length = 135
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76
D+ ++S+ +E + ++ V + S P + D + + S + DLIM+IP
Sbjct: 2 TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSANVAGSLQDIDLIMDIP 59
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
VK+ + LG M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + +
Sbjct: 60 VKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KY 116
Query: 137 GVRVIEILNA 146
GVR+ +I+
Sbjct: 117 GVRITDIITP 126
>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
Length = 375
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+K+ + Q T+ S T + + + S + +N +
Sbjct: 239 VKEETLKQPASQPTNKQKTSPQSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIE 298
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++
Sbjct: 299 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 358
Query: 131 EDDTHFGVRVIEILNA 146
E +FGVR+ +I+N
Sbjct: 359 E---NFGVRITDIVNP 371
>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
Length = 426
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
P Q + P + +V+ + +N DLIM++P++
Sbjct: 304 PQGYAMPPQGYAMP-PQGYAMPSQNYENVNVQPASFQPFTGGNALPGHENIDLIMDVPLE 362
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG I ++ + G ++ L+K GE +D+ +N + +AKGE+ ++EE FGV
Sbjct: 363 VTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVIEES---FGV 419
Query: 139 RVIEILN 145
++ EI+
Sbjct: 420 KITEIVK 426
>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
Length = 420
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
D + P+ + S M + + + + + N ++
Sbjct: 282 DRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLSML 341
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IP+++ + LG I ++ L +G +I LDK GE VDI +N + IAKGE+ ++EE
Sbjct: 342 LDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIEES 401
Query: 133 DTHFGVRVIEILNAQ 147
FGVRV +I++ +
Sbjct: 402 ---FGVRVTDIVSQE 413
>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
Length = 229
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
E L + + + + N + S + D I++IP+ + LG M I+ L+
Sbjct: 113 EKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELL 172
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L G V+ L K GE ++I +N + +A+GE ++ E FG+R+ +I++
Sbjct: 173 QLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 221
>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
Length = 401
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
D + + Q + + +Q N P +D+ N D+
Sbjct: 268 TDPVHMQQPTQGGYRQSMSQPPLQTRRQANVQPAAFTNFEHPELNDTE------AGNLDM 321
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++IP+++ + LG I ++++ ++G +I LDK GE VDI +N + IAKGE+ +++E
Sbjct: 322 LLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIDE 381
Query: 132 DDTHFGVRVIEILNAQ 147
+FGVRV EIL+ +
Sbjct: 382 ---NFGVRVTEILSQR 394
>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
Length = 135
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQ 80
+ T S + + ++ D +++P + ++ D+I++IPVK+
Sbjct: 4 ETTEQISADDWGAAMAEQTSADAVAQPAVQPHVFEQFGGAGGATAHNDLDMILDIPVKLT 63
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I NL+ L++G V+ L GE +D+ IN IA+GE+ ++ + G+R+
Sbjct: 64 VELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVVND---KLGIRL 120
Query: 141 IEILNA 146
+I+
Sbjct: 121 TDIITP 126
>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
Length = 138
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKMQIIL 83
TN + +E L Q+ ++ S + + D N L + + + D+IM+IPV++ + L
Sbjct: 11 STNHNEEDLWAEALEQQKQAESASAGMQNFDSLDGQNPLTQLS-DVDMIMDIPVRLSVEL 69
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I
Sbjct: 70 GRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDI 126
Query: 144 LNA 146
+
Sbjct: 127 ITP 129
>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
Length = 368
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI-SSDSNNILEKSTDNFDLIMNIPVKMQI 81
D ++ P ++ ++ N+ + +S T N D++++IP+++ +
Sbjct: 239 DQNMRGHAAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTV 298
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + ++ + G ++ LDK GE VDI IN+Q IA GE+ +++E +FGVRV
Sbjct: 299 ELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDE---NFGVRVT 355
Query: 142 EILNAQ 147
+I++ +
Sbjct: 356 DIVSQK 361
>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
Length = 145
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
D + + + + + ++ ++ D I++IPV++ + LG
Sbjct: 20 DDWGAAMAEQQQAEDSPLQAKPAQATVFTELTGKKMSETQNDIDFILDIPVQLTVELGRT 79
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 80 KIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 136
>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
Length = 159
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
N + + + +P+S + + + ++ ++I++IPVKM + LG + I NL+
Sbjct: 45 EQNHQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150
>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
Length = 376
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+K+ + + Q T S T + + + S K +N +
Sbjct: 240 VKEEALKQPVSQPTNKQKTLPQSHTQPPKKEQPQKVYNVSPVQFESFDEEEERKYPENIE 299
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++
Sbjct: 300 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 359
Query: 131 EDDTHFGVRVIEILNA 146
E +FGVR+ +I+N
Sbjct: 360 E---NFGVRITDIVNP 372
>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
Length = 179
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 93 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ +G+R+ +I+
Sbjct: 153 VVED---KYGIRLTDIITP 168
>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
Length = 137
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 27 QDTNVSSPTNNSEMLIQK----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D +S+ +E + ++ + S + S + DLIM+IPVK+ +
Sbjct: 8 SDDTISADDLWAEAMNEQVGSATTASQSDDVFKSFETSNASGSLQDIDLIMDIPVKLTVE 67
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +
Sbjct: 68 LGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRITD 124
Query: 143 ILNA 146
I+
Sbjct: 125 IITP 128
>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
Length = 159
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
N + + + +P+S + + + ++ ++I++IPVKM + LG + I NL+
Sbjct: 45 EQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150
>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
Length = 154
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145
>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 356
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE+
Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++E +FGVRV +I++
Sbjct: 333 VIDE---NFGVRVTDIVSP 348
>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
Length = 152
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQI 81
+ S + + K ++ +EP + + + N DLI++IPV M +
Sbjct: 23 EQAGDSGSRQGQTAASKAQAESSAEPYAPPTLEELATDPTAAAKDINLDLILDIPVTMAM 82
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+G + I +L+ L++G V+ L++ GE +D+ +N IA GE+ ++ E FG+R+
Sbjct: 83 EIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLT 139
Query: 142 EILNA 146
++++
Sbjct: 140 DVIST 144
>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
Length = 154
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L
Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145
>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
[Thermoanaerobacter tengcongensis MB4]
Length = 366
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 11 IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59
+K L+ + P + S SE I+K + N+S + +
Sbjct: 215 VKSVLQQATTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N +
Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
IAKGE+ +++E +FGVR+ +I++
Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358
>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
Length = 129
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ ++ S +N++ +++ DLI++IPVKM + LG M I L+ LS+G V++L+
Sbjct: 25 EQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGL 84
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +DI IN IA+GE+ ++ + FG+R+ +I+
Sbjct: 85 AGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 120
>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
Length = 287
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D S S ++Q+NDV++++ P +I + N +L++++ V + + LG
Sbjct: 165 DAVSSEVEKTSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSR 223
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ I +L++L G +ITLDK GE VDI +N + IAKGE+ +++E FGVR+++I+ +
Sbjct: 224 VSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDES---FGVRILDIIAPK 280
>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
Length = 172
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
QD + + V ++ + + DLIM++PV+M + LG
Sbjct: 45 QDDWADALAEQNAAPAAAPAVQPAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRT 104
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L +G V+ LD GE +DI +N IA+GE+ ++++ +G+R+ +I+
Sbjct: 105 RLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTDIITP 161
>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
Length = 351
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
+S + + + + S+ SE + + S D+ ++ T+
Sbjct: 208 VSMLNEQFDEEEQGTKEAGEMPKQSASGFQSEEQSPEAPTVQNVQFSSFDNTDVASSETN 267
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N +L+++IP+++ + LG + +++ +S+G +I LDK GE VDI INN+ IA GE+
Sbjct: 268 NLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDILINNKLIAVGEVV 327
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++E +FGVRV ++L+
Sbjct: 328 VIDE---NFGVRVTDVLST 343
>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
Length = 144
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 23 DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQ 80
D+P + + ++ D+ + P++ D+ + + + +++++IPV++
Sbjct: 12 DDPFSGWAEALEEQRQHDQAVEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLS 71
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 72 VELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 128
Query: 141 IEILNA 146
+++
Sbjct: 129 TDVVTP 134
>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
Length = 374
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
I VD + N DLI++IPV++ + LG I ++ + G
Sbjct: 262 AAISTAPVDARPAEFLPLHSGDGAALPGNIDLIVDIPVRITVELGRARKTIGEVLGMGPG 321
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V+ L++ GE VD+ +N + +A+GE+ +++E FG+RV EI++
Sbjct: 322 SVVELNRMAGEPVDVLVNGKLMARGEVVVIDES---FGIRVTEIVS 364
>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens LL3]
Length = 377
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 29/169 (17%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSN 59
I ++ I++ KD + M D P D VS P E + + + ++P
Sbjct: 204 IMQLYPITFAKDLI-AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQ 262
Query: 60 NILEK-----------------------STDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+K S +N D++M+IP+ + + LG + ++ L
Sbjct: 263 GTAKKAAPVQVAPVEFQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILEL 322
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
S G +I LDK GE VDI +N + +AKGE+ ++EE +FGVRV +IL+
Sbjct: 323 SAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NFGVRVTDILS 368
>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
Length = 174
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + D + + S + + D I++IP+++ LG + I+ L+
Sbjct: 59 EKEQAFLSTQTHDYEFKDMGSAAKGASSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 118
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++
Sbjct: 119 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 166
>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
Length = 362
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNN-SEMLIQKNDVDNISEPISSDSN 59
+++++ IS +S D + + P +E +K V + ++
Sbjct: 213 LVRELMSISKGIPFETSKSDDTDEHILENAPPEPQKPFNEKKAEKVSVKPVELEDFGEAE 272
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+KS+ DLIM++P+++ + LG +I ++ + G +I L+K GE VDI +N +
Sbjct: 273 TSGKKSS--LDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGK 330
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ +++E FGVR+ EILN+
Sbjct: 331 LIARGEVVVIDES---FGVRITEILNS 354
>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
Length = 172
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V + ++ + + + DL+M++PV++ + LG + I NL+ L +G V+ LD
Sbjct: 65 VQSAAQTVFKPLTGKDNAAGADIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDG 124
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +DI +N IA+GE+ ++EE +G+R+ +I+
Sbjct: 125 LAGEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 161
>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
Length = 159
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 4 KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNI 61
++S+ + E S + V++ + + + I D S+
Sbjct: 9 QISEDDWAAAMQEQASAEAGMDAESARVAADLAAAAAFDESPYQAKPASQIFEDFGSSGA 68
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N I
Sbjct: 69 KPGALNDFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLI 128
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE+ ++ + FG+R+ +I+
Sbjct: 129 AQGEVVVVND---KFGIRLTDIITP 150
>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
Length = 141
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+
Sbjct: 44 DFSGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 103
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA+GE+ ++ + FG+R+ +I+
Sbjct: 104 LVNGCLIAQGEVVVVND---KFGIRLTDIITP 132
>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium lentocellum DSM 5427]
Length = 403
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D N T + + + DVD + S N +N DL+M++ +++ + LG
Sbjct: 284 DPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTS 343
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+I ++ G +I L++ VGE VD+ +N + +A GE+ +++E +FG+R+ +I+N +
Sbjct: 344 RKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDE---NFGIRITDIINPE 400
>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
Length = 395
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
P + + + + + + + N L++++P+++ + L
Sbjct: 268 EPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPSADTEVKNLSLLLDVPLQVTVEL 327
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G + ++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVRV +I
Sbjct: 328 GRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFGVRVTDI 384
Query: 144 LN 145
++
Sbjct: 385 IS 386
>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
Length = 366
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 11 IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59
+K L+ + P + S SE I+K + N+S + +
Sbjct: 215 VKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N +
Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
IAKGE+ +++E +FGVR+ +I++
Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358
>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
Length = 138
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+ D + DN + D + K D + + + S + D
Sbjct: 1 MSDTNKPSDAGSDN-VDDLWADAFNEQQSAGGAKASTDGVFAALGAQDGT---GSLQDID 56
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+I++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++
Sbjct: 57 MILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVA 116
Query: 131 EDDTHFGVRVIEILNA 146
+ +GVR+ +I+
Sbjct: 117 D---KYGVRITDIITP 129
>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
Length = 379
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 17 GRSMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ P L+ +P + E + D N + +N D++M+I
Sbjct: 244 PEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPVEFSAFDPNEAPQAHLNNLDMLMDI 303
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE +
Sbjct: 304 PLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---N 360
Query: 136 FGVRVIEILN 145
FGVRV +IL+
Sbjct: 361 FGVRVTDILS 370
>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
Length = 101
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
S + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N
Sbjct: 6 AGATAGSGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNG 65
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++E+ +G+R+ +I+
Sbjct: 66 YLIAQGEVVVVED---KYGIRLTDIITP 90
>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
Length = 395
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNI 61
V + + + ++ ++ + + ++ + + + + + +
Sbjct: 246 VQEAAVSQPSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPS 305
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ I
Sbjct: 306 ADTEVKNLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLI 365
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
AKGE+ +++E +FGVRV +I++
Sbjct: 366 AKGEVVVIDE---NFGVRVTDIIS 386
>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
Length = 398
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62
+ V++ ++ + N + + + +N L ++ + + ++ +
Sbjct: 251 ETVTQQAFPQTNEQPQMDATNQHQSARQEPQFVSNGSRLPDRSAEVQPAAFSNFETPQLG 310
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
N D++++IP+++ + LG I +++ L++G +I LDK GE VDI +N + IA
Sbjct: 311 NNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIA 370
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ +++E +FGVRV +I++ +
Sbjct: 371 KGEVVVIDE---NFGVRVTDIVSKR 392
>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
Length = 147
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTD 67
++ L+G + + + + ++ E + ++ V+ + P +
Sbjct: 3 EEELQGGAAGAEEEVSMDDWAAAMAEQETVETQHAVEAEAVPAQGLFQEIGAGAVAGGPP 62
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 63 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ +I+
Sbjct: 123 VVND---KFGIRLTDIITP 138
>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
Length = 155
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + N + +P+S + + ++ D+I++IPV+M + LG
Sbjct: 34 DWASALAEQNDNTSEISATTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTK 90
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 91 LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146
>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 384
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNI 75
R P + + VD S ++ S N LI +I
Sbjct: 248 QRPAQQQAPRPSGGGGAGMSQPPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADI 307
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ + LG + +++ + G VI LDK GE VD+ +N + IAKGE+ +++E +
Sbjct: 308 PVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE---N 364
Query: 136 FGVRVIEILN 145
FGVRV EILN
Sbjct: 365 FGVRVTEILN 374
>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
Length = 190
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + L +++ E + D I++IP+ + LG + I+ L+
Sbjct: 74 ERDQDALSRQSASAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 133
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++
Sbjct: 134 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 182
>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
Length = 133
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M N + ++S+ ++ + ++ + S +N + S + DLIM+IPVK+
Sbjct: 1 MSDTNKPSEDDISADDLWADAMNEQASTPSSEGVFKSLESNDITGSLQDIDLIMDIPVKL 60
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ LG M I L+ L++G V++L+ GE +DI IN IA+GE+ ++ + +GVR
Sbjct: 61 TVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117
Query: 140 VIEILNA 146
+ +I+
Sbjct: 118 ITDIITP 124
>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 375
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74
+ + P+ Q V N+S P+ +S + E+ +N +LI++
Sbjct: 244 PKQPSSQSTKTQKAAPQPSYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E
Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359
Query: 135 HFGVRVIEILNA 146
+FGVR+ +I+N
Sbjct: 360 NFGVRITDIVNP 371
>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
Length = 155
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + N + +P+S + + ++ D+I++IPV+M + LG
Sbjct: 34 DWASALAEQNDNSSEVSASTAGVFQPLSKVAPT---STRNDIDMILDIPVQMTVELGRTK 90
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 91 LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146
>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
BC]
gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
BC]
Length = 151
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
G D+P + S I +S + + + +++++
Sbjct: 13 GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPAQDINMVLD 72
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 73 IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129
Query: 135 HFGVRVIEILNA 146
FG+R+ +++
Sbjct: 130 KFGIRLTDVVTP 141
>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
Length = 455
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILE 63
+ +Y + + Q ++ PT N + + + +
Sbjct: 308 MYPDAYGQQMMPPGYAPYPGMYQQPPMAPPTPQHFGGPAANQANVVPAQFAPLGGAPMYT 367
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
N +L+ +IP+++ + LG I +++LS G +I LDK GE VDI +NN+ IAK
Sbjct: 368 GDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAK 427
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ +++E +FGVRV +I++
Sbjct: 428 GEVVVIDE---NFGVRVTDIIS 446
>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
Length = 188
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ + D+IM+IPV++ + LG + I N++ L +G V+ LD GE +DI +N IA+
Sbjct: 98 ENNSDIDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQ 157
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ +++E +G+RV +I+
Sbjct: 158 GEVVVVDE---KYGIRVTDIITP 177
>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 156
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 24 NPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQI 81
P + + + + + +I + +D S + + D N D+I+++PV + +
Sbjct: 27 TPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSL 86
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+
Sbjct: 87 EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143
Query: 142 EILNA 146
++++
Sbjct: 144 DVVSP 148
>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 348
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
Q N N +M I S N N LIM++ +++ + LG
Sbjct: 224 AQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELGR 283
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M I +++ + +G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EIL+
Sbjct: 284 TRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEILS 340
Query: 146 A 146
Sbjct: 341 P 341
>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
Length = 154
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
S+ ++ + +P+S + ++ D+I++IPV+M + LG +
Sbjct: 35 WASALAEQNDNSEVSATTAGVFQPLSKVEPTT---TRNDIDMILDIPVQMTVELGRTKIA 91
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 92 IRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145
>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
C54]
Length = 100
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+
Sbjct: 14 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73
Query: 128 IMEEDDTHFGVRVIEILNA 146
++E+ +G+R+ +I+
Sbjct: 74 VVED---KYGIRLTDIITP 89
>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
Length = 154
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ E +D +L+++IP+K+ + LG M + ++ + G +I LDK GE
Sbjct: 54 AELKPSETRKTEVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 113
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 114 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 146
>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
Length = 154
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
+T ++ K + D + + ++S+S + N D++++IPV + + +
Sbjct: 27 ETEAKPEDKPAKGKGAKAESDAVQKASFDSLASESRAPATQEDVNLDVVLDIPVTISMEI 86
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G M I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++
Sbjct: 87 GRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDV 143
Query: 144 LNA 146
++
Sbjct: 144 ISP 146
>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
Length = 139
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 73/134 (54%), Gaps = 13/134 (9%)
Query: 20 MHIDN-PLQDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLI 72
M ID P +D ++ + +E L+++ + +EP +S S + + + + +
Sbjct: 1 MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 58 LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116
Query: 133 DTHFGVRVIEILNA 146
FG+R+ +++
Sbjct: 117 --KFGIRLTDVVTP 128
>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
Length = 202
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ E L +++ E + D I++IP+ + LG + I+ L+
Sbjct: 86 ERDQETLSRQSAAAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 145
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++
Sbjct: 146 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 194
>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 375
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
+K S++++ +++ + + ++ N SP QK +V + + DS++
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
AKGE+ +++E +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365
>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 360
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+++ + +S + T N L+M++ + M + LG M I +++ L
Sbjct: 245 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 304
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G +I L K GE VD+ +N + IAKGE+ +++E +FGVRV +I+N
Sbjct: 305 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 351
>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
Length = 147
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDNFDLIMN 74
P++D S + + + ++ D + S N + D+I++
Sbjct: 10 STPVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMILD 69
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 70 IPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVND--- 126
Query: 135 HFGVRVIEILNA 146
FG+R+ +I+
Sbjct: 127 KFGIRLTDIITP 138
>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
family [Ralstonia solanacearum PSI07]
gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum PSI07]
Length = 169
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 45 NDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
ND++++ +P+ DS ++ D+I++IPV++ + LG + I NL+ L++G V+
Sbjct: 61 NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LD GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 160
>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 375
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
+K S++++ +++ + + ++ N SP QK +V + + DS++
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
AKGE+ +++E +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365
>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
Length = 137
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ E ++++ S+ + + T N D+I++IPV + + +GS + I N
Sbjct: 20 EEQADDEAKAASPELEDFSQQARAAAIG-GGPGTPNLDVILDIPVTLSMEVGSTNISIRN 78
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Q
Sbjct: 79 LLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE---KFGIRLTDVISPQ 130
>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 132
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ D + + D I P++ N S + DLIM+IPVKM +
Sbjct: 7 PSAADDLWAEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVE 63
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I L+ L++G V+ LD GE +DI IN IA+GE+ + + +GVR+
Sbjct: 64 LGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVAD----KYGVRITS 119
Query: 143 ILNA 146
I+
Sbjct: 120 IITP 123
>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
Length = 359
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+++ + +S + T N L+M++ + M + LG M I +++ L
Sbjct: 244 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 303
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G +I L K GE VD+ +N + IAKGE+ +++E +FGVRV +I+N
Sbjct: 304 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 350
>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
Length = 188
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD----------SNNILEKS 65
E S D L D + + E IQ S D E
Sbjct: 43 EQDSGGSDQALADEWAKALADEEETKIQHEKKQKQLAAQSKDFEYKDLTAEAKAPRPEAL 102
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D I++IP+++ LGS + I+ L+ L +G VI L+K GE ++I +N + +A+GE
Sbjct: 103 RKDLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGE 162
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
++ E FGVR+ +I++
Sbjct: 163 AVVINE---KFGVRLTDIISP 180
>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
Length = 153
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D D S+ + + +P+S + ++ D+I++IPV+M +
Sbjct: 27 DEAALDDWASALAEQNGNDEINPAAGGVFQPLSKVEPT---STHNDIDMILDIPVQMTVE 83
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +
Sbjct: 84 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 140
Query: 143 ILNA 146
I+
Sbjct: 141 IITP 144
>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
Length = 375
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
+K S++++ +++ + + ++ N SP QK +V + + DS++
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
AKGE+ +++E +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365
>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
Length = 385
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 2 IKKVSKISYIKDNLEG----------RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS 51
I ++ IS+ K +E S+ ++ L + P + + +
Sbjct: 218 IMQLLSISFAKSLVEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVH 277
Query: 52 EPISSDSNNILE--------KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
P+ + E ++ N D++++IP+++ + LG + ++ LS G +I
Sbjct: 278 VPVDVQPASFSEFEHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIE 337
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
LDK GE VDI IN++ IAKGE+ +++E +FGVRV +I++ +
Sbjct: 338 LDKLAGEPVDILINSKLIAKGEVVVIDE---NFGVRVTDIISQK 378
>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
Length = 186
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ E L +++ + + + D I++IP+ + LG + I+ L+
Sbjct: 70 ERDQEALSRQSAKAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELL 129
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++
Sbjct: 130 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 178
>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
Length = 346
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ E +D +L+++IP+++ + LG M + ++ + G +I LDK GE
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338
>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
Length = 375
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74
+ + P Q V N+S P+ +S + E+ +N +LI++
Sbjct: 244 PKQPSSQSTKTQKAAPQPFYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E
Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359
Query: 135 HFGVRVIEILNA 146
+FGVR+ +I+N
Sbjct: 360 NFGVRITDIVNP 371
>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 422
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
++ + + Q T E K D + + + N +
Sbjct: 283 GPESGQSPEREVSTQGQPTGQGEQQMKQEQ-QPKKDYQPVEFSPLEGHQSAAKGENSNIE 341
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LIM++P+++ + LG +I ++ L G +I LDK GE VDI +N + IAKGE+ +++
Sbjct: 342 LIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVID 401
Query: 131 EDDTHFGVRVIEILNA 146
E +FG+R+ EI++
Sbjct: 402 E---NFGIRITEIISP 414
>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
Length = 395
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ E N D++++IP+++++ LG I ++++++G +I LDK GE VD+ I
Sbjct: 301 ETTKPDEAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLI 360
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N++ IAKGE+ +++E +FGVR+ +I++ +
Sbjct: 361 NDKLIAKGEVVVIDE---NFGVRITDIVSKK 388
>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
Length = 138
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK----STDNFDLIMNIPVKMQ 80
P + S ++ ++ + S + + S + DLI++IPVK+
Sbjct: 7 PSGEGKESVDDLWADAFNEQQSSEKTSAATEGVFKTLEAQDAIGSLQDIDLILDIPVKLT 66
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+
Sbjct: 67 VELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRI 123
Query: 141 IEILNA 146
+I+
Sbjct: 124 TDIITP 129
>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
Length = 109
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
N+ ++ + S L + N D+I+++PV + + +G M I NL+ L++G VI L
Sbjct: 3 NESAAAAQFDALQSEPGLAGNDLNLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIEL 62
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ GE +D+ +N IA GE+ ++ + FGVR+ ++++
Sbjct: 63 ERGAGEPLDVYVNGTLIAHGEVVVIND---RFGVRLTDVVSP 101
>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
MSMB43]
Length = 130
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
N + + + P+S + + ++ DLI++IPVKM + LG + I NL+
Sbjct: 16 EQNQQPIETGATGAGVFRPLS---KAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLL 72
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 73 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 121
>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
Length = 155
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ + ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N
Sbjct: 61 APAGKPGALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVN 120
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++ + FG+R+ +I+
Sbjct: 121 GTLIAQGEVVVVND---KFGIRLTDIITP 146
>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
Length = 157
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
NN+L + ++ D+I++IPV++ + LG + I NL+ L++G VI LD GE +D+
Sbjct: 60 QFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDV 119
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA+GE+ ++ E FG+R+ +I+
Sbjct: 120 LVNGCLIAQGEVVVVNE---KFGIRLTDIITP 148
>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 134
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ PL +T+ S + + + + S + T++ LI++IPVKM +
Sbjct: 11 EAPLHETDGQSLGDTACPAPSRPEFPPAS------TTEGGSPLTEDLSLILDIPVKMTVE 64
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I L++LS+ V+ L+ + GE +DI IN IA+GE+ +M E +GVR+ +
Sbjct: 65 LGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE---QYGVRIAD 121
Query: 143 ILNA 146
I+
Sbjct: 122 IVTP 125
>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
Length = 138
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
+++ S D+ + S +NI + + S + DLI
Sbjct: 2 SDIKKPSEETDSVDDLWADAFNEQQSAEKGASGSTENIFKNFDVQD---TQGSMQDIDLI 58
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ +
Sbjct: 59 LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117
Query: 133 DTHFGVRVIEILNA 146
+GVR+ +I+
Sbjct: 118 --KYGVRITDIITP 129
>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
Length = 142
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS-----NNILEKSTDNFDLIMNIPVKMQI 81
QD + E ++V +E ++ S + ++ ++I++IPV++ +
Sbjct: 10 QDAMAAEWAAALEQQSPGSEVVTTAEQVAPASFANFAPTPGGGAGNDINMILDIPVQLTV 69
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + I +++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 70 ELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 126
Query: 142 EILNA 146
+I+
Sbjct: 127 DIVTP 131
>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 127
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ D N SS + + M + N S + + ++ +LI++IPVKM + LG
Sbjct: 1 MSDMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAVPQFSEEMNLILDIPVKMTVELGR 60
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + FG+R+ +I+
Sbjct: 61 TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 117
Query: 146 A 146
Sbjct: 118 P 118
>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
Length = 378
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+ + P +E Q +V + S + +N +LI+++P+++ + LG
Sbjct: 263 SYTPPPQRTEQPQQVYNVSPVQ--FESFDEEEERRYPENIELILDVPLEITVELGRTQKL 320
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 321 VREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 374
>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
Length = 414
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
Y N P+Q P N Q ++ P+ S+ +N
Sbjct: 279 YGYPNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKENL 330
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ ++
Sbjct: 331 QLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVI 390
Query: 130 EEDDTHFGVRVIEILNAQ 147
++ +F VR+ EI+ ++
Sbjct: 391 DD---NFAVRITEIVKSK 405
>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
Length = 376
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCM 88
P+ ++ P+ +S + E+ +N +LI+++P+++ + LG
Sbjct: 258 APQPSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQK 317
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N
Sbjct: 318 LVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 372
>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
Length = 138
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
+++ S D+ + S + + I + + S + DLI
Sbjct: 2 SDIKKPSEETDSVDDLWADAFNEQQSAEKSASSSTEGIFKNFDVQD---TQGSMQDIDLI 58
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ +
Sbjct: 59 LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117
Query: 133 DTHFGVRVIEILNA 146
+GVR+ +I+
Sbjct: 118 --KYGVRITDIITP 129
>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
Length = 137
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------------KSTDNFDLIMNIP 76
++ P+ + + D +E +++D + + S + DLI++IP
Sbjct: 2 SDPKQPSGEGKESVDDLWADAFNEQLATDKTSASDAVFKSLEPQDASGSLQDIDLILDIP 61
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
VK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + F
Sbjct: 62 VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVAD---KF 118
Query: 137 GVRVIEILNA 146
GVR+ +I+
Sbjct: 119 GVRITDIITP 128
>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
ND132]
Length = 183
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + D + D+ + D I++IP+++ LG + I+ L+
Sbjct: 68 EKEQAFLSTQTHDYELPDMGPDAKAGSSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 127
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++
Sbjct: 128 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 175
>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
Length = 136
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N + + + I + + D+ + + + DLI++IPVK+ + LG M I L+
Sbjct: 23 NEQQTAEKAGSAEGIFKTLDVDTAS---GTAQDIDLILDIPVKLTVELGRTKMTIKELLR 79
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 80 LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 127
>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
[Tepidanaerobacter sp. Re1]
gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Tepidanaerobacter sp. Re1]
Length = 376
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
Q+ ++ P Q +V + + + +LI+++P+++ + LG
Sbjct: 252 QEAVLTMPQKEPLKSAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRT 311
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I ++ +S G +I LDK GE DI +N + +AKGE+ +++E +FGVR+ EI+N+
Sbjct: 312 EKTIKEILEISSGTIIELDKMAGEPADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368
>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
Length = 346
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ E +D +L+++IP+++ + LG M + ++ + G +I LDK GE
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338
>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
Length = 131
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
N S+P N E I V +S+ I + + + + N D I++IP+K+ + LG +
Sbjct: 10 ENQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEV 68
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I +L+ L +G V+ LDK GE ++I +N + +AKGE+ ++ E FG+R+ +I++
Sbjct: 69 MIKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIISP 123
>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
Length = 151
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
G D+P + S I +S + + + +++++
Sbjct: 13 GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPVQDINMVLD 72
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 73 IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129
Query: 135 HFGVRVIEILNA 146
FG+R+ +++
Sbjct: 130 KFGIRLTDVVTP 141
>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. WCH70]
Length = 401
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + + N L++++P+++ + LG + +++LS G +I LDK GE VD
Sbjct: 304 AEFEPSPPADAEVKNLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVD 363
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +NN+ IAKGE+ +++E +FGVRV +I++
Sbjct: 364 ILVNNKLIAKGEVVVIDE---NFGVRVTDIIS 392
>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
Length = 138
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 22 IDNPLQDTNVS----SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
I P ++T+ + N + +K+ + + S + DLI++IPV
Sbjct: 4 IKKPSEETDSVDDLWADAFNEQQSAEKSAPGGTEGIFKNFDVQDTQGSMQDIDLILDIPV 63
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
K+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +G
Sbjct: 64 KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD---KYG 120
Query: 138 VRVIEILNA 146
VR+ +I+
Sbjct: 121 VRITDIITP 129
>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga naphthophila RKU-10]
Length = 346
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ E +D +L+++IP+++ + LG M + ++ + G +I LDK GE
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338
>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
Length = 97
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
ST DL++++P+++ + LG M I +L+ L+ G VI LDK GE +DI
Sbjct: 2 EAQTPRNGDSTRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N + +A+GE ++ + FGVR+ +I++ Q
Sbjct: 62 VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90
>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
Length = 393
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ G M +P Q N+ + N M + ++ N LIM+
Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IAKGE+ ++EE
Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375
Query: 135 HFGVRVIEILNA 146
FGVR+ EIL+
Sbjct: 376 -FGVRITEILSP 386
>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
Length = 419
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
P+Q P N Q +N P+ S+ +N L+M++P
Sbjct: 291 PNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFENFEAPLGSE-------QKENLQLLMDVP 342
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ ++++ +F
Sbjct: 343 LQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDD---NF 399
Query: 137 GVRVIEILNAQ 147
VR+ EI+ ++
Sbjct: 400 AVRITEIVKSK 410
>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
Length = 393
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ G M +P Q N+ + N M + ++ N LIM+
Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IAKGE+ ++EE
Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375
Query: 135 HFGVRVIEILNA 146
FGVR+ EIL+
Sbjct: 376 -FGVRITEILSP 386
>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 377
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNF 69
+E + Q T S + + + V N+S P+ +S + E+ +N
Sbjct: 241 TKTIEKTVKSEQSKKQQTGASLQSFQPKKEEKSERVYNVS-PVQFESFDEEEERRYPENI 299
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+LI+++P+++ + LG + ++ S G +I LDK GE VDI +N + IAKGE+ ++
Sbjct: 300 ELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAKGEVVVI 359
Query: 130 EEDDTHFGVRVIEILNA 146
+E FGVR+ +I+N
Sbjct: 360 DES---FGVRITDIVNP 373
>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
Length = 170
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 79/123 (64%), Gaps = 4/123 (3%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
P TN S+P+ +E + I +S++ ++ N +LIM+IPV++Q++L
Sbjct: 52 TPNLRTNPSTPSFGAEAAGKTT----IGGTGASNAPKNPSDTSSNTELIMSIPVEVQVVL 107
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GS M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI
Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167
Query: 144 LNA 146
++
Sbjct: 168 IDK 170
>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 1313]
Length = 406
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI
Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA GE+ +++E FGVR+ +IL+
Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402
>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor bescii DSM 6725]
Length = 378
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DN 68
+K+ + ++ Q P ++ P+ +S + E+ +N
Sbjct: 240 VKEEVLRQTSSQTTKSQKKASQPPYTPPPQRKEQPQQVYNVSPVQFESFDEEEERRYPEN 299
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +
Sbjct: 300 IELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVV 359
Query: 129 MEEDDTHFGVRVIEILNA 146
++E +FGVR+ +I+N
Sbjct: 360 IDE---NFGVRITDIVNP 374
>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 127
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ +D +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN
Sbjct: 36 AAPQFSDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYL 95
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++ + FG+R+ +I+
Sbjct: 96 IAQGEVVVVSD---KFGIRITDIITP 118
>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
Length = 97
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
ST D+++++P+++ + LG M I +L+ L+ G VI LDK GE +DI
Sbjct: 2 EAQTPRNGDSTRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N + +A+GE ++ + FGVR+ +I++ Q
Sbjct: 62 VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90
>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
Length = 143
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D P Q + E + E + +D N+ + N +LI++IPV M +
Sbjct: 18 DAPSQPQAGVD-SGQEEESTSMFHPQAVLEELEADPGNVTKDI--NLELILDIPVTMAME 74
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ +
Sbjct: 75 IGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTD 131
Query: 143 ILNA 146
+++A
Sbjct: 132 VISA 135
>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
Length = 122
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
+ +E L ++ D EP S + + + +++++IPV++ + LG + I ++
Sbjct: 2 ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAADINMVLDIPVQLSVELGRTKVPIKHI 61
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 62 LQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVTP 111
>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
Length = 398
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI
Sbjct: 306 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 365
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA GE+ +++E FGVR+ +IL+
Sbjct: 366 LVNGKVIAIGEVVVIDES---FGVRITDILHP 394
>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
27405]
gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
27405]
Length = 406
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI
Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA GE+ +++E FGVR+ +IL+
Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402
>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 366
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD------NF 69
E +P+ VS + + +V E ++ + ++ D NF
Sbjct: 226 EQGPKETGSPV-SAKVSQVAREASGRVVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNF 284
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLI+++PV++ + LG I ++NL+ G VI LDK G+ VDI +N + IA+GE+ ++
Sbjct: 285 DLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVVVI 344
Query: 130 EEDDTHFGVRVIEILN 145
+E +FGVR+ EI+N
Sbjct: 345 DE---NFGVRITEIVN 357
>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
Length = 400
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++K+++ + + + N LIM++P+ + + LG I +++L G +
Sbjct: 291 VKKSEIAVQPVQFAPLTPEVRYVEPQNISLIMDVPLNVSVELGRTRKTIKEILDLGPGSI 350
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ L+K GE VDI +N + IAKGE+ +++E ++GVRV I++
Sbjct: 351 VQLEKLAGEPVDILVNGKLIAKGEVVVIDE---NYGVRVTAIISP 392
>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
Length = 390
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
N++ + + + S + N+ N +LI++IP+K+ ++LG
Sbjct: 268 NMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDIPLKVSVVLGRTKRP 327
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I +++ ++ G V+ LD E V+I +N +A GE+ ++ E +FGVR+ I++
Sbjct: 328 IKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNE---NFGVRITNIISP 381
>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
Length = 134
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
K D D +S S + + + N D ++++P+++ + LG M I+ ++ L++G VI
Sbjct: 27 KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LDK GE V+I +N + + KGE+ ++ E FG+RV EI++
Sbjct: 87 LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125
>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
Length = 170
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ + + + + + D I++IP+ + LG
Sbjct: 45 ATEEQGQLRKEKEQAFLSQAQEAKFKDLTEESRAPRPDSGKRELDFILDIPLDVSAELGR 104
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I+ L+ L +G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++
Sbjct: 105 TRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE---KFGVRLTDIIS 161
Query: 146 A 146
Sbjct: 162 P 162
>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
Length = 226
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+ T E + + EP + N+ ++ N D+IM+IPV + + +G + I
Sbjct: 108 ARETQRQENWQAERAELDELEPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIR 166
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A
Sbjct: 167 HLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218
>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 190
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+
Sbjct: 103 KLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVAR 162
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE ++ E FGVR+ +I++
Sbjct: 163 GEAVVINE---KFGVRLTDIISP 182
>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
Length = 385
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
+ P + T +E DV + S + + + + N D++++IP++
Sbjct: 254 EKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASF-AEFEHVSSPQGDSRNLDMLLDIPLQ 312
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+ +++E +FGV
Sbjct: 313 VTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVVVIDE---NFGV 369
Query: 139 RVIEILNAQ 147
RV +I++ +
Sbjct: 370 RVTDIISQR 378
>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 421
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
+ P N + P+ ++ N +LI+++P
Sbjct: 287 QQQQGYGGPAYGHNQGGYYTPGYGVPPTPVQPAQFVPLKPGDPLHGQE---NLELILDVP 343
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+++ + LG I ++ L G VI LD+ GE VD+ +N + +AK E+ ++ E F
Sbjct: 344 LQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEVVVINET---F 400
Query: 137 GVRVIEILNA 146
G+R+ +I+
Sbjct: 401 GIRITDIVQP 410
>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 370
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+K DV + D + +N +LIM+IP+ + + LG I +++ L++G
Sbjct: 261 KAEKVDVKPVIFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGS 320
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+I LDK GE VDI +N + IAKGE+ +++E +FGVR+++I+
Sbjct: 321 IIELDKLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIVK 362
>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
Length = 150
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
M ++ + N + + +P+++D + ++ D+I++IPV+
Sbjct: 19 EMTMEEAMALEAAQRAAANPPAATPAAESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQ 76
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ E FG+
Sbjct: 77 LTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGI 133
Query: 139 RVIEILNA 146
R+ +I+
Sbjct: 134 RLTDIITP 141
>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
Length = 138
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
P D S ++ ++ + + ++ + DLI++IPVK+
Sbjct: 7 PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+
Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123
Query: 141 IEILNA 146
+I+
Sbjct: 124 TDIITP 129
>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
BAA-894]
gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
Length = 154
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-------------- 67
I+ P + ++ L ++ + ++ + +D+ + + +
Sbjct: 4 INKPSDENAGEMDDLWADALKEQKSTGDSADDLWADALSEQKTAGKSSADSVFRALEGGD 63
Query: 68 ------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN I
Sbjct: 64 MVGALQDINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 123
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE+ ++ + +GVR+ +I+
Sbjct: 124 AQGEVVVVAD---KYGVRITDIITP 145
>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
Length = 139
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
++ DN E + +E + ++IM+IPVK+ + LG M I L+NL+
Sbjct: 25 AQQSKPPKPTDNGPEIFDNLEMQDIENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLT 84
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V++LD GE +DI IN IA+GE+ ++ + +G+R+ +I+
Sbjct: 85 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130
>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
Length = 139
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLI 72
+ + D+ + D + Q + + S + ++ N +++
Sbjct: 1 MAENTEQTDDSMDDWAAAMAEQAEVESGQTKSGGTVPPLDQFESAGKSNGTENPINLEVL 60
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M++PV + + +G + I +L+ L++G ++ LD+ GE +D+ +N IA+GE+ ++ E
Sbjct: 61 MDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVINE- 119
Query: 133 DTHFGVRVIEILNA 146
FG+R+ ++++
Sbjct: 120 --KFGIRLTDVISP 131
>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
Length = 137
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQI 81
P + S ++ ++ + S S S + DLI++IPVK+ +
Sbjct: 7 PSGEGKESVDDLWADAFNEQQATEKTSATDAVFKSLEAQDAVGSLQDIDLILDIPVKLTV 66
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+
Sbjct: 67 ELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRIT 123
Query: 142 EILNA 146
+I+
Sbjct: 124 DIITP 128
>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
Length = 417
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + IAK
Sbjct: 328 GQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKC 387
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++ E FG+R+ +I+
Sbjct: 388 EVVVINET---FGIRITDIVQP 406
>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 150
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 65/113 (57%), Gaps = 14/113 (12%)
Query: 45 NDVDNISEPISSDSNNILEKST-----------DNFDLIMNIPVKMQIILGSCCMQISNL 93
D +EP+++ LE+++ N D+I++IPV + + LG +QI NL
Sbjct: 33 KDTPPSAEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNL 92
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ L++G V+ L++ GE +D+ +N IA+GE+ ++ + FG+R+ +I++
Sbjct: 93 LQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIISP 142
>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
nematophila ATCC 19061]
gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus nematophila ATCC 19061]
Length = 135
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ D L D + + +I E + + + DLIM+
Sbjct: 1 MSDAKQPTDTSLTDDMWAEALEQQAAQQTSDGGASIFENLEPQD---VLSQLSDIDLIMD 57
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ +
Sbjct: 58 IPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 114
Query: 135 HFGVRVIEILNA 146
+G+R+ +I+
Sbjct: 115 KYGIRITDIITP 126
>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 138
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
P D S ++ ++ D + ++ + DLI++IPVK+
Sbjct: 7 PSDDGKESVDDLWADAFNEQLASDKPAATTDGVFKSLEAPDALGNLQDIDLILDIPVKLT 66
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+
Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123
Query: 141 IEILNA 146
+I+
Sbjct: 124 TDIITP 129
>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
Length = 144
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 51 SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
P + + + +N DL+M+IPV + + LG +QI L+ L++G V+ LD+ G
Sbjct: 43 PAPFAELRADQGGAAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N IA+GE+ ++ + FG+R+ +I++
Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136
>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
Length = 398
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S ++ + N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N
Sbjct: 305 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 364
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +AKGE+ +++E +FGVR+ +I++
Sbjct: 365 GKFLAKGEVVVIDE---NFGVRITDIVSP 390
>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
Length = 154
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILG 84
+ T S+ ++ L ++ S + + + + +LIM+IPVK+ + LG
Sbjct: 27 KGTGDSAEDLWADALSEQKTAGKSSADSVFRALEGGDMIGALQDINLIMDIPVKLTVELG 86
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 87 RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDII 143
Query: 145 NA 146
Sbjct: 144 TP 145
>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
Length = 404
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K
Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GE +DI +N + +AKGE+ ++EE FGVR+ EI+N++
Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397
>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
Length = 147
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + Q +SE + + + + D+I++IPV + + +G + I NL+
Sbjct: 31 EDEAAANNQGAAPMELSEFDEPAAAPASQGNNPDLDVILDIPVSISMEVGRTSITIRNLL 90
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 91 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 139
>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
Length = 394
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S ++ + N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N
Sbjct: 301 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 360
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +AKGE+ +++E +FGVR+ +I++
Sbjct: 361 GKFLAKGEVVVIDE---NFGVRITDIVSP 386
>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
Length = 404
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K
Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GE +DI +N + +AKGE+ ++EE FGVR+ EI+N++
Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397
>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
Length = 138
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
P D S ++ ++ + + ++ + DLI++IPVK+
Sbjct: 7 PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+
Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123
Query: 141 IEILNA 146
+I+ +
Sbjct: 124 TDIITS 129
>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
Length = 144
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 51 SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
P + + + +N DL+M+IPV + + LG +QI L+ L++G V+ LD+ G
Sbjct: 43 PAPFAELRADQGGGAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N IA+GE+ ++ + FG+R+ +I++
Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136
>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
Length = 154
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK-----ST 66
+ +LE L + ++ + + + + P ++ L K +
Sbjct: 9 ESDLEAAEQLAAGALSAAEDDAAMDDWASALAEQNGNAEVNPAAAGVFQPLSKVEPTATH 68
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+
Sbjct: 69 NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + FG+R+ +I+
Sbjct: 129 VVVND---KFGIRLTDIITP 145
>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
Length = 149
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +P++ ++ + ++ ++I++IPV++ + LG + I NL+ L++G V+ LD G
Sbjct: 50 VFQPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 106
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 107 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140
>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
Length = 149
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
D+P + I +S + E + ++++
Sbjct: 10 NSGGSAADDPFAGWAEALEEQKRVDGQTIDAEQGGPLSGEPARPYAAGGEPQVHDINMVL 69
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ +
Sbjct: 70 DIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND-- 127
Query: 134 THFGVRVIEILNA 146
FG+R+ +++
Sbjct: 128 -KFGIRLTDVVTP 139
>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
Length = 375
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + + +V + P + ++ N L+M++ ++M + LG I +++
Sbjct: 262 GGGQGMYNQANVQPVQFPPLN--PQMVSGEQGNIGLLMDVYMEMTVELGRTKRLIKDILG 319
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EI++
Sbjct: 320 MGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEIVSP 367
>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus bovienii SS-2004]
Length = 135
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQ 89
+ +E L Q+ S N + + + DLIM+IPVK+ + LG M
Sbjct: 13 TEDMWAEALEQQAAQQTSDSGASIFENLEPQDALAQLSDIDLIMDIPVKLSVELGRTKMT 72
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +G+R+ +I+
Sbjct: 73 IKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 126
>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 124
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+
Sbjct: 39 QDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEV 98
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+
Sbjct: 99 VVVAD---KYGVRITDIITP 115
>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
Length = 124
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E + S + + DLI++IPVK+ + LG M I L+ LS
Sbjct: 10 NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 69
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ +
Sbjct: 70 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 115
>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
Length = 144
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
P SE+ V + + ++ S ++ ++I++IPV++ + LG + I +
Sbjct: 25 EPEVASEVRAPAETVAP-AAFTNFGASVPASGSGNDINMILDIPVQLTVELGRTRIPIKH 83
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 84 ILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 134
>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter sp. X513]
gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X513]
Length = 375
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
+N+S+ ++ + N + + + + ++ +N +LI+++P+ + + LG
Sbjct: 253 SNISTRDKVTKKKQKVNVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKK 312
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I +++ LS+G +I LDK GE VDI N + IAKGE+ +++E +FGVR+ +I+
Sbjct: 313 LIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDE---NFGVRITDIV 365
>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 138
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E + S + + DLI++IPVK+ + LG M I L+ LS
Sbjct: 24 NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 83
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ +
Sbjct: 84 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 129
>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
Length = 377
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+ G +M + P Q + M++ + + S N + N
Sbjct: 242 GNPQMPGMNMQMGIPQQMNGMQQ----GGMIMPGINPNVQSVQFQPLQNVPVGTEQGNIG 297
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LIM++ +++ + LG M I +++ + +G +I LDK GE VDI +N++ IAKGE+ +++
Sbjct: 298 LIMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVID 357
Query: 131 EDDTHFGVRVIEILNA 146
E +FGVRV EIL+
Sbjct: 358 E---NFGVRVTEILSP 370
>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 180
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
++ +++E S + D I++IP+ + LG + I+ L+ L +
Sbjct: 71 ASAAREAKFKDLTEEAKSPRP---DSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQ 127
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++
Sbjct: 128 GSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIISP 172
>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 137
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E + S + + + DLI++IPVK+ + LG M I L+ L+
Sbjct: 23 NEQQAAEKPAATTEGIFKSLEGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLT 82
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 83 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KYGVRITDIITP 128
>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
SCRI1043]
gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
SCRI1043]
Length = 137
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 52 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+
Sbjct: 112 VVVSD---KYGVRITDIITP 128
>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
Length = 124
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+S + + +SE S + + +D +LI++IPVKM + LG M I L+
Sbjct: 7 SSGSAVNDLGAEAMSEQTSEGMTQAMSATHISDELNLILDIPVKMTVELGRTKMTIKELL 66
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LS+G V+ LD GE +DI IN IA+GE+ ++ + FG+R+ +I+
Sbjct: 67 RLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 115
>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
Length = 164
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
E S D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +
Sbjct: 70 ARTPRPEGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFV 129
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + +A+GE ++ E FGVR+ +I++
Sbjct: 130 NGKLVARGEAVVINE---KFGVRLTDIISP 156
>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 124
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+E + S + + DLI++IPVK+ + LG M I L+ LS
Sbjct: 10 NEQQATEKPAATTEGVFKSLEAPDALGNLQDIDLILDIPVKLTVELGRTKMTIKELLRLS 69
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 70 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 115
>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
Length = 136
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 28 DTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D + S+ ++ + Q+ ++ ++ E + + + + + +LIM+IPVK+ +
Sbjct: 9 DNSQSAEDMWADAMEQQTGKSQDNSSDLFEHLLPEDDTL--NHLSDINLIMDIPVKLTVE 66
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + +G+R+ +
Sbjct: 67 LGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITD 123
Query: 143 ILNA 146
I+
Sbjct: 124 IITP 127
>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
Length = 396
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ M + +V ++ P ++ E+ N LIM++ ++M + LG QI ++ +
Sbjct: 287 ASMGMNAPNVQSLQFPGLQSGMSVTEQG--NIGLIMDVYMEMTVELGRTKKQIKEILGMG 344
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EIL+
Sbjct: 345 EGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 390
>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 398
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 17 GRSMHIDNPLQDTNVSSP-TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
I P Q+ + + + + + + S N DLIM++
Sbjct: 263 QAETAISPPPQEPIYGQAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDV 322
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+ + + LG I ++ L++G +I LDK GE VD+ +N + IAKGE+ +++E +
Sbjct: 323 PLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDE---N 379
Query: 136 FGVRVIEILNA 146
+G+R+ I++
Sbjct: 380 YGIRITTIISP 390
>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 139
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
D+ + S + DLI++IPVK+ + LG M I L+ LS+G V++LD
Sbjct: 35 DSSAAIFESLEPQDALAHLSDIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGL 94
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +DI IN IA+GE+ ++ + +G+R+ +I+
Sbjct: 95 AGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130
>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
Length = 151
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ + +P+++D + ++ D+I++IPV++ + LG + I NL+ L++G V+ LD
Sbjct: 47 ESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELD 104
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +D+ +N IA+GE+ ++ E FG+R+ +I+
Sbjct: 105 ALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 142
>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
Length = 156
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ P++ ++ ++ +I++IPV++ + LG + I NL+ L++G V+ LD
Sbjct: 56 TVFPPLAQEAPP---GFHNDIGMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLA 112
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 113 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 147
>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
Length = 124
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE
Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ ++ + FG+R+ +I+
Sbjct: 98 VVVVSD---KFGIRITDIITP 115
>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
BAA-1498]
Length = 170
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
P TN +P+ E + I +S++ ++ N +LIM+IPV++Q++L
Sbjct: 52 TPNLRTNPGTPSFGGEAAGKTT----IGGTGASNAPKSPGDTSSNTELIMSIPVEVQVVL 107
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GS M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI
Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167
Query: 144 LNA 146
++
Sbjct: 168 IDK 170
>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
Length = 343
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ + + + +D +L++++P+K+ + LG M + ++ ++ G +I LDK GE
Sbjct: 239 DQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEP 298
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IAKGE+ +++E +FGVR+ EI+ +
Sbjct: 299 VDILVNGRLIAKGEVVVVDE---NFGVRITEIVTPK 331
>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
Full=Flagellar motor switch protein MopA
Length = 106
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 21 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 80
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+
Sbjct: 81 VVVSD---KYGVRITDIITP 97
>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
Length = 408
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ ++ N +LIM++ ++M + LG I +++ L +G +I LDK GE VDI +N
Sbjct: 315 TQSVGGGEQGNINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVN 374
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ IAKGE+ +++E +FGVRV EIL A
Sbjct: 375 HKPIAKGEVVVIDE---NFGVRVTEILPA 400
>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
Length = 400
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI--SEPISSDSNNI-------L 62
N + M+ +N + + N+ + V N+ S+P+
Sbjct: 251 TSNYNSQPMNYNNQQTNYDSQPVNYNAAPQAYQQPVHNVYESKPVEVSKATFQPLRTADT 310
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ +N DLIM++P+ + ++LG I ++++L+ G +I LDK E V+I +N +KIA
Sbjct: 311 KSLPNNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIA 370
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
GE+ +++E +FGVR+ I++++
Sbjct: 371 YGEVVVVDE---NFGVRITSIVSSE 392
>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
Length = 372
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
D + + I N + + + + + + + +D + EK +N +LI
Sbjct: 237 DIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDVKPVVFKELDADEQTVSEK--ENINLI 294
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M+IP+ + + LG I +++ L++G +I LDK GE VDI +N + IAKGE+ +++E
Sbjct: 295 MDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVDILVNGKFIAKGEVVVIDE- 353
Query: 133 DTHFGVRVIEILN 145
+FGVR+++I+
Sbjct: 354 --NFGVRILDIVK 364
>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
profundum SS9]
Length = 129
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82
+ + + + L ++ P+ +S I + D IM+IPV + +
Sbjct: 1 MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ +
Sbjct: 61 VGRTQISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117
Query: 143 ILN 145
+++
Sbjct: 118 VIS 120
>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
Length = 151
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +E + ++ S + I N D+I++IPV + + +G + I NL+
Sbjct: 37 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 94
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 95 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 143
>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
Length = 136
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMN 74
M +N D + S+ ++ + Q+ ++ ++ E + + + + + +LIM+
Sbjct: 1 MSDENRPTDNSQSAEDMWADAMEQQTGKSQDNSSDVFEHLLPEDDTL--NHLSDINLIMD 58
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ +
Sbjct: 59 IPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 115
Query: 135 HFGVRVIEILNA 146
+G+R+ +I+
Sbjct: 116 KYGIRITDIITP 127
>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
Length = 376
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
E+ + + + + P S E + N L+ ++P+ + + LG + ++ LS+
Sbjct: 271 EVAVSQAEFMPLQSPASQ------EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQ 324
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G +I LDK GE VDI +N Q+IA+GE+ ++EE +FGVRV EI+
Sbjct: 325 GSIIELDKLAGEPVDIYVNQQRIARGEVVVIEE---NFGVRVTEIIQP 369
>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
Length = 382
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S S N + E N LIM++ ++M + LG I ++++ +G +I LDK GE
Sbjct: 283 SVQFSPLLNGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGE 342
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VDI +N++ IAKGE+ +++E +FGVRV EIL+
Sbjct: 343 PVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 375
>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
Length = 155
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+ N + +P+S + + ++ D+I++IPV+M + LG + I
Sbjct: 38 ALAEQNDNSSEISASTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTKLAIR 94
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 95 NLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146
>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
Length = 370
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILG 84
Q +P + V+ + NI +N LIM++P+++ + LG
Sbjct: 253 AQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELG 312
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I +++ S G +I L+K GE++D+ +N + +AKGE+ ++E+ +FG+R+ EI+
Sbjct: 313 RTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIED---NFGIRITEIV 369
Query: 145 N 145
Sbjct: 370 K 370
>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
Length = 344
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ E D +L++++P+K+ + LG M + ++ + G +I LDK GE V
Sbjct: 245 ELKPSGTAKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPV 304
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
DI +N + IA+GE+ +++E +FGVRV EI++ +
Sbjct: 305 DILVNGKLIARGEVVVIDE---NFGVRVTEIVSPK 336
>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
Length = 113
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M ++ ++ + ++ +++ D I++IP+ + + LG M +++L+ L +G
Sbjct: 1 MAENNSEANSSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQG 60
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ L+K GE +++ IN + IA+GE+ ++ E FGVR+ +I+
Sbjct: 61 SIVELNKLAGEPLEVYINRKLIARGEVVVVNE---KFGVRLTDIITP 104
>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 126
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT +E I++ + E SSD+ + E+ D IM+IPV + + +G
Sbjct: 4 DTGDDWAAAMAEQAIEEAQAVELDE-FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSF 62
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
Length = 360
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS + L+ +LI++IP+K+ ++LG I ++ L G ++ LD E V+I
Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N +A+GE+ ++EE +FGVR+ I+ Q
Sbjct: 319 LVNGVLVARGEVVVVEE---NFGVRITSIVTPQ 348
>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
Length = 154
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + +P+S + ++ D+I++IPV+M + LG + I NL+
Sbjct: 40 AEQNDNTEVSATTAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145
>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
Length = 154
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + +P+S + ++ D+I++IPV+M + LG + I NL+
Sbjct: 40 AEQNDNSEVSAATAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 97 QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145
>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 148
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
+N D+P + +S+ + ++ ++ E ++
Sbjct: 5 GDNNDNDGKSAADDPFAGWAEALEEQKSSDEAPPTDQGGPLAGDPVRPFSSSNEAPVNDI 64
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++
Sbjct: 65 NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124
Query: 130 EEDDTHFGVRVIEILNA 146
+ FG+R+ +++
Sbjct: 125 ND---KFGIRLTDVVTP 138
>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
degradans 2-40]
gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
Length = 135
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCC 87
S + + Q+ D ++ I D + + N D+I++IPV + + +G
Sbjct: 12 SMADEWAAAMEQQETEDGAAQSIDLDEFQPVTGAPTNNNPDLDVILDIPVSISMEVGRTS 71
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 72 ITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 127
>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
Length = 148
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
N D+P + +S+ + ++ ++ E ++
Sbjct: 5 GDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDI 64
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++
Sbjct: 65 NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124
Query: 130 EEDDTHFGVRVIEILNA 146
+ FG+R+ +++
Sbjct: 125 ND---KFGIRLTDVVTP 138
>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
Length = 142
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQ 80
+P+ D + S + I + E + ++ ++I++IPV++
Sbjct: 11 DPMDDWASALAEQTSATAAEAPVAAAIPAAATVFPPLAKEAPSGFQNDIEMILDIPVQLT 70
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 71 VELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 127
Query: 141 IEILNA 146
+I+
Sbjct: 128 TDIITP 133
>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
Length = 127
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + + + +++ V+ E S+D N + D I++IPV + + +G
Sbjct: 1 MSEDQDQMANDWAAAMAEQSTVEAAELEDFSNDDNAFSPEQQHKLDSILDIPVVISMEVG 60
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 61 RSKISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 117
Query: 145 N 145
+
Sbjct: 118 S 118
>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
Length = 137
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+
Sbjct: 52 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + +GVR+ +I+
Sbjct: 112 VVVSD---KYGVRITDIMTP 128
>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 93
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE
Sbjct: 7 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ ++ + FG+R+ +I+
Sbjct: 67 VVVVSD---KFGIRITDIITP 84
>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 381
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN 68
S I ++ E +N L+D N+ ++ + N + + + + ++ +N
Sbjct: 239 SAIIESDEKSVETDNNILKDNNILKEEKTTKKKQKVNASPVVFQSFDEEPSIEGKEEKEN 298
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+ +
Sbjct: 299 LELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVV 358
Query: 129 MEEDDTHFGVRVIEIL 144
++E +FGVR+I+I+
Sbjct: 359 IDE---NFGVRIIDIV 371
>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 379
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72
+ + P + K P+ + D N + N D++
Sbjct: 241 QPKEPVTPEPRIEPQQQQQQPPKRQGTPKKAAPVQVSPVEFSAFDPNEASQAPIHNLDML 300
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE
Sbjct: 301 LDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE- 359
Query: 133 DTHFGVRVIEILN 145
+FGVRV +IL+
Sbjct: 360 --NFGVRVTDILS 370
>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
[Clostridium novyi NT]
Length = 396
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
IK +L ID P + P N+ + ++ V + N + N D
Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNS----VPQSQVSVQRANFAPLDQNPISGVPQNID 314
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI+++P+++ ++LG I +++L G +I LDK E V+I +N +KIA GE+ +++
Sbjct: 315 LILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVD 374
Query: 131 EDDTHFGVRVIEILNAQ 147
E +FGVR++ I++ +
Sbjct: 375 E---NFGVRIVSIVSGE 388
>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
flin/mopa/spao family. [Cupriavidus taiwanensis LMG
19424]
gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
19424]
Length = 148
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ P++ ++ + ++ ++I++IPV++ + LG + I NL+ L++G V+ LD G
Sbjct: 49 VFPPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 105
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N IA+GE+ ++ + FG+R+ +I+
Sbjct: 106 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 139
>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
Length = 249
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
D + L + D P + DL+ ++ + + + LG
Sbjct: 129 DAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRT 188
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
M + +L+ L+ G V+ LD+ G D+ +N Q IA+GE+ +++ED + +R+ EI+
Sbjct: 189 SMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDED---YAIRITEIVTP 245
Query: 147 Q 147
+
Sbjct: 246 E 246
>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
Length = 399
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+P + P+SS + + N LI+++P+++ + LG
Sbjct: 281 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 337
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++
Sbjct: 338 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 391
>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
Length = 124
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
N + D++ N + N + +++IP+++ + +GS M
Sbjct: 3 NGDTTAPPDASNAGAGDINVQPTSFPPVDNQNAVPANKNIEFVLDIPLQVTVQIGSTRML 62
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I L+ L +G VI L+K GE +++ +NN+ +A+GE+ ++ E FG+R+ ++++
Sbjct: 63 IRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE---KFGIRLTDVVSP 116
>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
Length = 157
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +E + ++ + + + LE N D+I++IPV + + +G + I NL+
Sbjct: 43 TPVAEPSTPRAPMEEFGAAPKAPTISGLEG--PNLDVILDIPVTISMEVGHTDISIRNLL 100
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149
>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 145
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +++
Sbjct: 48 SFGEQGNSGSLMNELDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNV 107
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA+GE+ ++ + FG+R+ +I+
Sbjct: 108 FVNGTLIAQGEVVVVND---KFGIRLTDIVTP 136
>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
Length = 395
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+P + P+SS + + N LI+++P+++ + LG
Sbjct: 277 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 333
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++
Sbjct: 334 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 387
>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
crunogena XCL-2]
gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
XCL-2]
Length = 153
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+ EG D+P + +E +D + + + + + D+
Sbjct: 17 QAEAEGSDAAGDDP---WGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKVDLDV 73
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++IPV +Q+ +G + I NL++ ++G VI +D+ GE +D+ +N IA GE+ ++ +
Sbjct: 74 LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133
Query: 132 DDTHFGVRVIEILNAQ 147
FGVR+ ++++ Q
Sbjct: 134 ---KFGVRLTDVVSPQ 146
>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
Length = 370
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNS------EMLIQKNDVDNISEPI 54
+KK+ ++ + ++ + P + N + IQKN V
Sbjct: 210 FVKKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQF 269
Query: 55 SSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + + KST + +++IP+ + + LG + + ++ LS G +I LDK GE
Sbjct: 270 QSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGE 329
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VDI +N + IA+GE+ +++E +FGVR+ EI++ Q
Sbjct: 330 PVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363
>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
Length = 389
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+ +++ P ++ + + + V + + +S + ++ N D
Sbjct: 251 VSEDINPTYQE--QPKEEWRRETNYLGNASVSSSPTVQE-AAFSNFESPTLSKQEHRNLD 307
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+++++P+K+ + LG IS++++LS G +I LDK GE VDI +N + +A+GE+ ++E
Sbjct: 308 MLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIE 367
Query: 131 EDDTHFGVRVIEILN 145
E +FGVRV +I++
Sbjct: 368 E---NFGVRVTDIIS 379
>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
Length = 393
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+P + P+SS + + N LI+++P+++ + LG
Sbjct: 275 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 331
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++
Sbjct: 332 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 385
>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
Length = 132
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ ++ D I++IPV + + LG + I NL+ L++G V+ LD GE +D+
Sbjct: 35 EFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 94
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA+GE+ ++ + FGVR+ +I+
Sbjct: 95 LVNGCLIAQGEVVVVND---KFGVRLTDIITP 123
>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +
Sbjct: 196 TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 255
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE+ ++ + +GVR+ +I++
Sbjct: 256 ARGEVVMVND---KYGVRLTDIVSP 277
>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
Length = 379
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL---EKSTDNFDLIM 73
G + P+ + + + Q +P + N +N LIM
Sbjct: 251 GGQQVMGQPMMGQPMMGQPMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIM 310
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ + LG I +++ + G +I L++ GE +DI +N + +AKGE+ ++EE
Sbjct: 311 DVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEES- 369
Query: 134 THFGVRVIEILN 145
FGVR+ EI+
Sbjct: 370 --FGVRITEIVK 379
>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
Length = 157
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +E + ++ S + I N D+I++IPV + + +G + I NL+
Sbjct: 43 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149
>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 129
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + + L ++ D + E ++ +S I + D IM+IPV + + +G
Sbjct: 3 DNNDQQMADDWAAALAEQADDVQPAPLEELTDESTPITDDERRKLDTIMDIPVTISMEVG 62
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 63 RTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 119
Query: 145 N 145
+
Sbjct: 120 S 120
>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
australiensis 50-1 BON]
gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
australiensis 50-1 BON]
Length = 366
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 65/96 (67%), Gaps = 5/96 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ + +++++ +L+ S N +LIM+IP+++ + LG + +++ L G VI LD+ G
Sbjct: 268 VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELGTGSVIELDRLAG 325
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
E +DI +N + +A+GE+ +++E +FGVR+IE+++
Sbjct: 326 EPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358
>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
Length = 359
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 74/137 (54%), Gaps = 10/137 (7%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
I D ++ + P++ + ++ + ++ IQK + ++ S K+ N D
Sbjct: 226 ITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELTHAGSL-------KTPRNLD 278
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+GE+ ++
Sbjct: 279 LIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVIN 338
Query: 131 EDDTHFGVRVIEILNAQ 147
E FG+R+ IL+ +
Sbjct: 339 ES---FGIRITNILSKE 352
>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
DMS010]
gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
DMS010]
Length = 155
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
Q + + + + P++ ++ + + D++M+IPV + + +G
Sbjct: 30 AQQEDPWAEAMEEQAAAESTQQKANPAPVAQLDDDGKPRKDVDLDMVMDIPVTISMEIGR 89
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ LS+G V+ LD+ GE +D+ +N+ IA GE+ ++ + FG+R+ ++++
Sbjct: 90 TRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVVND---KFGIRLTDVIS 146
Query: 146 A 146
A
Sbjct: 147 A 147
>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter italicus Ab9]
Length = 375
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ + + + ++ +N +LI+++P+ + + LG I +++ LS+G +I LDK G
Sbjct: 274 VFQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAG 333
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E VDI N + IAKGE+ +++E +FGVR+I+I+
Sbjct: 334 EPVDILANGKYIAKGEVVVIDE---NFGVRIIDIV 365
>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
Length = 151
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
M + ++ +P + E + + N + ++ DL+M+IPV
Sbjct: 19 EEMKVSVTPANSAARTPADQDETIGAGETGSG--QIFEQFQNTQKVQIQNDIDLVMDIPV 76
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ E FG
Sbjct: 77 QLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVNE---KFG 133
Query: 138 VRVIEILNA 146
+R+ +I+
Sbjct: 134 IRLTDIITP 142
>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
Length = 392
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKG
Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++EE +G+R+ EI+
Sbjct: 375 EVVVIEES---YGIRITEIIK 392
>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
Length = 174
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ + + N D+I++IPV + + +G + I +L+ L++G V+ LD+ GE
Sbjct: 75 DEFDPAATRAGGEDDQNIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEP 134
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 135 LDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISP 166
>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
Length = 143
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 23 DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
D+P + + +++ ++ + ++ +++++IPV++ +
Sbjct: 12 DDPFSGWAEALDEQRERDAKLEEEQGGPLTGEPVRPYAGGADVPVNDINMVLDIPVQLSV 71
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+
Sbjct: 72 ELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 128
Query: 142 EILNA 146
+++
Sbjct: 129 DVVTP 133
>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. SMY]
gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
motor switch protein FliY
gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 378
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73
+ + P + + +K +S E + D N ++ N D+++
Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE
Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358
Query: 134 THFGVRVIEILN 145
+FGVRV +IL+
Sbjct: 359 -NFGVRVTDILS 369
>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 368
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
GR + + ++P L + D+ + N LIM++P
Sbjct: 236 GRGQATPAAGRMMDGAAPAVPG--LSWGGNAAAARTQPGQDTMYRSPAISGNLGLIMDVP 293
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + + +G ++ +++N + G V+ LDK+ VDI +N Q IA+GE+ ++++ +F
Sbjct: 294 LNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NF 350
Query: 137 GVRVIEILNAQ 147
GVR+ EI+N +
Sbjct: 351 GVRITEIVNTR 361
>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
Length = 148
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P S N ++++++PV + + +G + I NL+ L++G V+ LD+ GE +
Sbjct: 50 PEDFSGFKPEPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPL 109
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 110 DVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 140
>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
Length = 163
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
++ ++ V+ + D I++IP+ + + LG C M IS L+ L
Sbjct: 50 AQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVELGRCRMLISELLQLG 109
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+G +I L K GE +D+ +N + IA+GE+ ++ E FG+R+ +I++
Sbjct: 110 QGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE---KFGIRLTDIVSP 155
>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
Length = 352
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
P V++PT + + +S+P + DN DLI+++P+ +
Sbjct: 225 ETPTPQPTAPVAAPTPEPAATSKPVE---VSKPAFQTLASSGVSDGDNLDLILDVPLDLS 281
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
++LG I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+
Sbjct: 282 VVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRI 338
Query: 141 IEILNAQ 147
IL+ +
Sbjct: 339 TNILSQK 345
>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
Length = 392
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKG
Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++EE +G+R+ EI+
Sbjct: 375 EVVVIEES---YGIRITEIIK 392
>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
Length = 157
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +E + ++ S + I N D+I++IPV + + +G + I NL+
Sbjct: 43 TPVAESSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149
>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
BEST195]
gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
Length = 378
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73
+ + P + + +K +S E + D N ++ N D+++
Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE
Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358
Query: 134 THFGVRVIEILN 145
+FGVRV +IL+
Sbjct: 359 -NFGVRVTDILS 369
>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
Length = 194
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGS 85
+D + S + D + ++ S + K D I++IP+ + LG
Sbjct: 69 EDKSGPSTFGGAGAGGGGQTTDAHFKDMTEMSRQPRDNKLKRELDFILDIPLDVSAELGR 128
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I+ L+ L +G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++
Sbjct: 129 TRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIIS 185
Query: 146 A 146
Sbjct: 186 P 186
>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
Length = 352
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDN----ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
+T PT + + + +S+P + DN DLI+++P+ + ++L
Sbjct: 225 ETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVL 284
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+ I
Sbjct: 285 GRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNI 341
Query: 144 LNAQ 147
L+ +
Sbjct: 342 LSQK 345
>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
Length = 248
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
++ +N ++ K + ++ + P +S ++ E+ ++ L+ ++
Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQASATAEQRAESMKLLYDVE 174
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + +G + + ++++LS G VI LD+ G + D+ +N + IA GEI +++E+ +
Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231
Query: 137 GVRVIEILN 145
G+R+ EI++
Sbjct: 232 GIRITEIVS 240
>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
Length = 390
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 313
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 314 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 370
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 371 FGVRITNIVSSQ 382
>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
Length = 138
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ + S+ N N D+I+++PV + + LG + I NL+ L++G V+ LD+ GE
Sbjct: 39 DKLDSEPGNAGTDEDVNLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEP 98
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N +A GE+ ++ E FG+R+ ++++
Sbjct: 99 LDVMVNGTLVAHGEVVVVNE---RFGIRLTDVVS 129
>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
Length = 197
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+P + D + + +K +N DLIM++P+++ + LG I +++ + G +I L+K
Sbjct: 104 AAFQPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIA 161
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GESVD+ +N + +AKGE+ ++EE +FGVR+ EI+ Q
Sbjct: 162 GESVDVLVNGKNVAKGEVVVIEE---NFGVRITEIIKEQ 197
>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
Length = 248
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
++ +N ++ K + ++ + P +S + E+ ++ L+ ++
Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQATATAEQRAESMKLLYDVE 174
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + +G + + ++++LS G VI LD+ G + D+ +N + IA GEI +++E+ +
Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231
Query: 137 GVRVIEILN 145
G+R+ EI++
Sbjct: 232 GIRITEIVS 240
>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
Length = 360
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
++ +SKI + + + + T +P N + ++
Sbjct: 211 VRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAG 270
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + I
Sbjct: 271 SLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLI 330
Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
A+GE+ ++ E FG+R+ IL+ +
Sbjct: 331 AEGEVVVINES---FGIRITNILSKE 353
>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
Length = 171
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 74/116 (63%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
S P + NI + +++N ++ N +LIM+IPV++Q++LGS M +
Sbjct: 56 GSKPGMPGSLGAGAAGKTNIGGLGAQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPV 115
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FG+ + EI++
Sbjct: 116 ATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGISLTEIIDK 171
>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 129
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ + + + L ++ D + E ++ D+ I + D IM+IPV + + +G
Sbjct: 4 NNDQQMADDWAAALAEQADDVQPAPLEELTDDTVAITDDERRKLDTIMDIPVTISMEVGR 63
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 64 TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
Length = 187
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEM--------LIQKNDVDNISEPISSDSNNILEKSTD 67
E M D+ + + + E + + + ++ D+ E +
Sbjct: 44 ESSEMSQDDLADEWAKALASEEEESFKDEQKQKSLSSQSKEAQFKDLTEDAKKKPEGTKR 103
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ D I++IP+ + LG + I+ L+ L +G VI L+K GE +++ +N + +A+GE
Sbjct: 104 DLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAV 163
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ E FG+R+ +I++
Sbjct: 164 VINE---KFGIRLTDIISP 179
>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
657]
Length = 386
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
Length = 386
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
Length = 154
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 58 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146
>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
Maree]
gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
Loch Maree]
Length = 386
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S + +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLSIRESATT--MPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
Length = 401
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+S M+ N +P + + +L+ T+N DL++++P+++ + LG
Sbjct: 291 GMSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKS 348
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +++ + G ++ L++ GE +D+ +N + +AKGE+ ++EE FG+RV +I+
Sbjct: 349 IREILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEA---FGIRVTDIIK 401
>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
Length = 172
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ S ++ + D+I++IPV + + +G+ + I NL+ L++G VI L
Sbjct: 65 DDIRAASFETFDETMPTSAPGAPDLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIEL 124
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 125 DRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163
>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
Length = 259
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88
SP ++ + + +EP + S D L+ ++ + + + +G +
Sbjct: 140 PSPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKL 199
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +++L+ G ++ LD+ G D+ +N +A+GE+ +++ED +G+RV EI++
Sbjct: 200 PVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIIDT 254
>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
Length = 129
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82
+ + + + L ++ P+ +S I + D IM+IPV + +
Sbjct: 1 MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +
Sbjct: 61 VGRTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117
Query: 143 ILN 145
+++
Sbjct: 118 VIS 120
>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
Length = 119
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
D I++IP+ + + LG M+I +L+ L +G V+ L K GE ++I +N + A+GE+ +
Sbjct: 37 LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ E FGVR+ +I++ Q
Sbjct: 97 VNE---KFGVRLTDIVSPQ 112
>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 126
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D+ +E I++ + E +SD + E+ D IM+IPV + + +G
Sbjct: 4 DSGDDWAAAMAEQAIEEAKAVELDE-FNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSF 62
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
Length = 396
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
++V S + S ++ + N LI+++P+++ + LG I +++L+KG ++
Sbjct: 289 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 348
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++
Sbjct: 349 LDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 388
>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
Okra]
Length = 386
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 152
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
+ ++ +Q + ++ + S+ + N D+I++IPV + + +GS + I
Sbjct: 37 AADTGAHASSRLQMEEFGSVPK-----SHEPVTLDGPNLDVILDIPVSISMEVGSTDINI 91
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 92 RNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
hydrocarbonoclasticus]
Length = 166
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + ++ DV + + D+I++IPV + + +G+ + I NL+
Sbjct: 49 GGDDQPEAERQDVRTAPMEEFGADQGAGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157
>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 125
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M D + ++ + ++ ++ N S P+S D D IM+IPV +
Sbjct: 1 MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTI 53
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R
Sbjct: 54 SMEVGRSFINIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIR 110
Query: 140 VIEILN 145
+ ++++
Sbjct: 111 LTDVIS 116
>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 3502]
gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
19397]
gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
ATCC 3502]
gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 19397]
gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
Hall]
gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
Length = 386
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPTKAVEAPKQEIVYEKPIEREAPKVEIKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
Length = 422
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--------TDNFDLIMNIPV 77
+D + P +E L + P + + + DLI++IP+
Sbjct: 288 FEDFSRPEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPL 347
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
K+ +ILG I +++ L+ G V+ L V E V++ +N +A GE+ ++ E +FG
Sbjct: 348 KVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNE---NFG 404
Query: 138 VRVIEILNAQ 147
VR+ I+ +
Sbjct: 405 VRITSIIGPE 414
>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
Langeland]
gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
Langeland]
gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
230613]
Length = 386
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMIYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
Length = 165
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
D L D ++ + + +D ++ E S + + + N D+I++IPV +
Sbjct: 35 DQALADEWAAAMEESGDADSDDSDDPQVAPLEQFDSTAGSEFNEDNPNLDVILDIPVTIS 94
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ +G+ + I NL+ L++G VI LD+ GE +D+ +N + IA GE+ ++ E FG+R+
Sbjct: 95 MEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE---KFGIRL 151
Query: 141 IEILNAQ 147
++++ Q
Sbjct: 152 TDVVSQQ 158
>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
Length = 166
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + ++ DV + + D+I++IPV + + +G+ + I NL+
Sbjct: 49 GGDDQPEAERQDVRTAPMEEFGADQGPGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157
>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Epulopiscium sp. 'N.t. morphotype B']
Length = 408
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P ++ + D+ + + + ++ +N D+++++ +++ + LG +I +
Sbjct: 295 PGMPPSSVVFQPDMQIATPQFQNFNQIVVPTGAENIDILLDVALEVSVELGRTKKKIREI 354
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ S+G +I LDK VGE +DI +N + IA GE+ +++E +FGVR+ I+ +
Sbjct: 355 LDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE---NFGVRIKSIIKPE 405
>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 175
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + D I++IP+ + LG + I+ L+ L +G V+ L+K GE ++
Sbjct: 78 TEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLE 137
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I +N + +A+GE ++ E FGVR+ +I++
Sbjct: 138 IYVNGKLVARGEAVVINE---KFGVRLTDIISP 167
>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
Length = 122
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
S+ + N LI++IP+K+ + LG M +S L+NL++G VI L K GE +++ +
Sbjct: 28 ASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYV 87
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N++ IA+GE ++ E FGVR+ +I++
Sbjct: 88 NDKLIARGEAVVVNE---KFGVRLTDIISP 114
>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 153
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 58 PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 117
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 118 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 145
>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 153
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 129 VVVNE---KFGIRLTDVISP 145
>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 129
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ + + + L ++ D + E ++ ++ I + D IM+IPV + + +G
Sbjct: 4 NNDQQMADDWAAALAEQADDVQPAPLEELTDETVPITDDERRKLDTIMDIPVTISMEVGR 63
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 64 TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
065]
Length = 386
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
+ + ++ P Q+ P ++ EP+S +N DLI+++
Sbjct: 254 KKPAKVVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366
Query: 136 FGVRVIEILNAQ 147
FGVR+ I+++Q
Sbjct: 367 FGVRITSIVSSQ 378
>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
Length = 158
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +E + ++ S + I N D+I++IPV + + +G + I NL+
Sbjct: 43 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ + E FG+R+ ++++
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE---KFGIRLTDVISP 149
>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
Length = 127
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E +++ + E ++ S + E+ D IM+IPV + + +G
Sbjct: 4 EDTGDDWAAAMAEQALEEAQAVELDE-LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
Length = 112
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVSP 104
>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
642]
Length = 152
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+ + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSSGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
Length = 381
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
Q N + +++ + E + + N L+ ++P+ + + LG
Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDE----GATPRDARPVANLSLLYDVPLNVTVELGR 315
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I ++ L+ G ++ LDK GE VDI +N +KIA GE+ +++E +FGVRV +I+
Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372
Query: 146 A 146
A
Sbjct: 373 A 373
>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
Max13]
gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
K40]
gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 152
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSAGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
Length = 152
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
B728a]
gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
FF5]
gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
syringae pv. syringae B728a]
gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
1704B]
gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 152
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
HP15]
Length = 163
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVD--NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+D ++ E ++DV + E + ++ + D+I++IPV + + +G
Sbjct: 36 EDEWAAAMAEAGETGEAEDDVQAAPMEEFETGSEPSMGGGPAPDIDVILDIPVTISMEVG 95
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ +++
Sbjct: 96 NTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVI 152
Query: 145 NA 146
+
Sbjct: 153 SP 154
>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
Length = 153
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 23 DNPLQDTNVSSPTNNSEML---IQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75
D P Q + E + ++K +V ++S P + +++ N +LI++I
Sbjct: 18 DAPSQSQVGELDSGQEEKVTSEVKKEEVASMSGPQAVLEELEADPGNVTKDINLELILDI 77
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV M + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E
Sbjct: 78 PVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---K 134
Query: 136 FGVRVIEILNA 146
FG+R+ ++++A
Sbjct: 135 FGIRLTDVISA 145
>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
Length = 161
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 65 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 124
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 125 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 153
>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 152
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
301020]
gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 152
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144
>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
Length = 160
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 64 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 123
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 124 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 152
>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 152
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 68 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 127
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 128 VVVNE---KFGIRLTDVISP 144
>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
Length = 203
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
D L ++ + + + E + + +P ++ + N ++
Sbjct: 65 DELLNQAQASSSGSESADALMGAEKRERKHKPDPEAEPLKPEELAASAGMSAEDINLQMV 124
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
+++PV + + +G + I NL+ L++G V+ LD+ GE++D+ +N IA GE+ ++ E
Sbjct: 125 LDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVVVVNE- 183
Query: 133 DTHFGVRVIEILNA 146
FG+R+ ++++
Sbjct: 184 --KFGIRLTDVISP 195
>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
Length = 254
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI
Sbjct: 147 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 206
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++
Sbjct: 207 ELDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246
>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
Length = 163
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
N E+ ++ + +++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N
Sbjct: 70 NGGEQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGY 129
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++ + FG+R+ +++
Sbjct: 130 LIAQGEVVVVND---KFGIRLTDVVTP 153
>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
Length = 373
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+N DLI ++P+++ + LG I +++ L G V+ LD+ GE VD+ +N + IAK E
Sbjct: 288 PNNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCE 347
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ ++ E FG+R+ EI+N
Sbjct: 348 VVVINET---FGIRITEIIN 364
>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
16/4]
Length = 394
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ +N DLI+++P+ + + LG I ++++ + G +I L+K GE +D+ +N + +AKG
Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++EE FGVR+ EI+
Sbjct: 376 EVVVIEES---FGVRITEIIKE 394
>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
Length = 145
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 35 TNNSEMLIQKNDVDNISE------PISSDS---NNILEKSTDNFDLIMNIPVKMQIILGS 85
+E L ++ D+ P+S + + ++ ++ +++++IPV++ + LG
Sbjct: 18 AGWAEALEEQKRSDDAPADAEQGGPLSGEPVRPFSSGGETVNDINMVLDIPVQLSVELGR 77
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++
Sbjct: 78 TKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 134
Query: 146 A 146
Sbjct: 135 P 135
>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
Length = 160
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 76 PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 135
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 136 VVVNE---KFGIRLTDVISP 152
>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
Length = 578
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N + Q N + ++ P +D + E+ DN +++M +P+++ + +G I +++
Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G ++ LDK GE D+ +N + IA G+I ++E+ +FG+R+ EILN
Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILNK 571
>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
Length = 375
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
T + + + + +VD S N N +LI ++P+++ + LG
Sbjct: 251 ASTTGQPVSGSANRVSAGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGK 310
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M I +++L +G ++ L+K GE VD+ +N + IAKGE+ +++E +FG RV +I++
Sbjct: 311 TRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGFRVKDIIS 367
Query: 146 A 146
Sbjct: 368 P 368
>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 112
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVSP 104
>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 112
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++
Sbjct: 89 VVND---RFGIRLTDVVSP 104
>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
Length = 154
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 58 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146
>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
phosphatase fliY) (Flagellar motor switch protein fliY)
[NC10 bacterium 'Dutch sediment']
Length = 324
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQ---KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
L +T+ + P N++ + + + P + + D+++++ +++ +
Sbjct: 196 LPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVNLQVSVE 255
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG +QI +++ L G ++ LDK+ G++VDI +N++ IAKGE+ I++E +FGVR+
Sbjct: 256 LGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDE---NFGVRLTS 312
Query: 143 ILN 145
I +
Sbjct: 313 ITS 315
>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
Length = 408
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
S + ++ VD S S E+ DLI ++P+++ + LG M I +++ L
Sbjct: 296 SGAVSREESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELG 355
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G VI LDK GESVD+ +N + IAKGE+ +++E +FG RV +I++
Sbjct: 356 NGSVIELDKLAGESVDLLVNGKLIAKGEVVVIDE---NFGFRVTDIVSP 401
>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 381
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
Q N + +++ + E ++ + N L+ ++P+ + + LG
Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDEGVT----PRDARPVANLSLLYDVPLNVTVELGR 315
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I ++ L+ G ++ LDK GE VDI +N +KIA GE+ +++E +FGVRV +I+
Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372
Query: 146 A 146
A
Sbjct: 373 A 373
>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++
Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60
Query: 130 EEDDTHFGVRVIEILNA 146
+ +GVR+ +I+
Sbjct: 61 AD---KYGVRITDIITP 74
>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
Length = 153
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + + V+ + ++ + + DLIM+IPV + + LG+ + I NL+
Sbjct: 37 EDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDLDLIMDIPVVLSMELGNTEIAIRNLM 96
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++
Sbjct: 97 QLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 145
>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
Length = 170
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIM 73
S PL +P + SS ++ + + + D N +LIM
Sbjct: 38 PGSFGAGAPLSGAATPTPGAKPGAPAFGAGAAGKTTIGSSGASKVPQNAGDTSSNTELIM 97
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV++Q++LGS M +S L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D
Sbjct: 98 SIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVLEDDP 157
Query: 134 THFGVRVIEILNA 146
+ FGV + EI++
Sbjct: 158 SRFGVSLTEIIDK 170
>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 112
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+
Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88
Query: 128 IMEEDDTHFGVRVIEILNA 146
++ + FG+R+ ++++
Sbjct: 89 VIND---RFGIRLTDVVSP 104
>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
Length = 127
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E +++ + + E + DS I + D I++IPV + + +G
Sbjct: 4 EDTGDDWAAAMAEQALEEANAVALDE-LVDDSQPISKADAAKLDTILDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
Length = 150
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + +++ E ++ + DLIM+IPV + + LGS + I NL+
Sbjct: 36 DEWAAAMSEQDAKPVELEELTPSLGAP--DAPAGMDLIMDIPVTLSMELGSTSIAIRNLL 93
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G V+ LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++
Sbjct: 94 QLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 142
>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris str. B100]
gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris]
Length = 112
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + + + N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+
Sbjct: 16 SLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 76 YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104
>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
Length = 106
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + + E ++ DLI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 2 AQDSAMEQPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDR 61
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 62 LAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 98
>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
Length = 112
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 51 SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ P + DS + N D+I+++PV + + +G + I NL+ L++G V+ L++
Sbjct: 9 ASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 69 AGEPLDVYVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104
>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
Length = 109
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+N +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 6 ENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101
>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
Length = 112
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S L + N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+
Sbjct: 16 SLQPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ + FG+R+ ++++
Sbjct: 76 YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104
>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 109
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 61/91 (67%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++ + + N D I+ IPV +Q++LGS M +SNL+ L +G VI LD RVGE VDI
Sbjct: 14 GETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIV 73
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA+GE+ ++E+D++ FGV + EI+
Sbjct: 74 VNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104
>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
Length = 150
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
S + + D+I++IPV++ + +G+ + I NL+ L++G VI LD+ GE +D+ +
Sbjct: 56 ASARHQRNGSPDLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLV 115
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N IA GE+ ++ E FG+R+ ++++
Sbjct: 116 NGTLIAHGEVVVVNE---KFGIRMTDVISP 142
>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 130
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
+ +P + + S ++ +E + S N D I+ IPV MQ+
Sbjct: 1 MSSPSEQPSTESGQGGGHSESLFTRIEAQAEGQRVHDERL--GSGRNLDSILRIPVLMQV 58
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+LGS M +SNL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++E+D++ FGV +
Sbjct: 59 VLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVVEDDNSRFGVSLT 118
Query: 142 EILNA 146
EI+
Sbjct: 119 EIVGP 123
>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
Length = 417
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+E + + + Q T + + V+ + + + N DL
Sbjct: 281 SPKVEPKPVETYSQPQYTTAPQMQYTA----PQPQVNIQKASFAPLQEANINGAPQNIDL 336
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA GE+ +++E
Sbjct: 337 ILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE 396
Query: 132 DDTHFGVRVIEILNAQ 147
+FGVR++ I++ +
Sbjct: 397 ---NFGVRIVNIVSGE 409
>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
Length = 133
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S + D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N
Sbjct: 40 PEPGKRNSNPDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVN 99
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
IA GE+ ++ E FG+R+ ++++
Sbjct: 100 GTLIAHGEVVVVNE---KFGIRMTDVISP 125
>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum acetoxidans DSM 771]
Length = 572
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 6 SKISYIKDNLEGRSMH----IDNPLQDTNVSS--PTNNSEMLIQ--KNDVDNISEPISSD 57
++ + LE + ++ P+ T + P N + +N S P
Sbjct: 417 YEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEERV 476
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S + + D +LI+++P+ + ++LG I +++ L+ G V+ L V E V++ +N
Sbjct: 477 SQTPADVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVN 536
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+A+GE+ ++ E +FGVR+ ++ Q
Sbjct: 537 GTLVARGEVVVVNE---NFGVRITNVITPQ 563
>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
Length = 172
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N + +KN+V S + K + + D+IM+IPV + + +G+ + I NL+
Sbjct: 56 NRDKKSDKKNNVRAAPMEEFSSDSVNTSKGSPDLDVIMDIPVTISMEVGNTMIPIRNLLQ 115
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G VI LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 116 LNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND---KFGIRLTDVMSP 163
>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
Length = 165
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
G P T + T +S + + ++++ + N +LIM+IP
Sbjct: 38 GAGASAQKPGMSTPGA--TASSGPAFTASAGKTVGSMGATNAQKNTNEVHSNPELIMSIP 95
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++QI+LGS M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + F
Sbjct: 96 VEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVLEDDPSRF 155
Query: 137 GVRVIEILNA 146
GV + E++
Sbjct: 156 GVSLTEVMGK 165
>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
Length = 214
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 73/97 (75%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + S + T NF+LIM+IP+ +QI+LG+ MQ+S+L+NL++G I LDK++GE
Sbjct: 116 SSSFEASSAPLGSALTSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGE 175
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 176 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 212
>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
Pf0-1]
Length = 152
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
+++ E ID L +S +N + + V ++P++ D N D
Sbjct: 21 LEETGEAGQADIDALLAADAGTSSSNRL-PMEEFGSVPKNNDPVTLDGP--------NLD 71
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++
Sbjct: 72 VILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVN 131
Query: 131 EDDTHFGVRVIEILNA 146
E FG+R+ ++++
Sbjct: 132 E---KFGIRLTDVISP 144
>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
Length = 131
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M D D ++ E+ Q +V + E +S+ I ++ D I++IPV +
Sbjct: 1 MSDDQDTMDEWAAALAEADEVENQDVEVAEL-EELSNQPAEITQEEKRKLDTILDIPVTI 59
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R
Sbjct: 60 SMEVGRSKISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116
Query: 140 VIEILN 145
+ ++++
Sbjct: 117 LTDVIS 122
>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
Length = 155
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ +P+ + + S + + I+++PV++ LG + I +L+ LS+G V+ LD G
Sbjct: 54 VFQPLQAMATGA--GSPVDVERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAG 111
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +D+ IN IA+GE+ ++ E +G+R+ +I+
Sbjct: 112 QPLDVLINGYLIAQGEVVVVNE---KYGIRLTDIVTP 145
>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
Length = 411
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ N DLI++IP+K+ +ILG I +++ ++ G V+ LD E VDI +N
Sbjct: 316 TSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNG 375
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+A GE+ ++ E +FG+R+ I++
Sbjct: 376 TLVATGEVVVVNE---NFGIRITNIISP 400
>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
Length = 150
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKND-------VDNISEPISSDSNNILEKST-- 66
+ +D+ L D ++ + + + + D + +P+ D
Sbjct: 6 NPDAAGMDSELADEWAAAMSESGDEATEDVDDVWAEAMSEQEVKPVQFDELPATTDGAIS 65
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ DLIM+IPV + + LG + I NL+ L++G V+ LD+ GE +D+ +N IA GE+
Sbjct: 66 SDLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEV 125
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ + +G+R+ ++++
Sbjct: 126 VVVND---KYGIRLTDVVSP 142
>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
Length = 140
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ + + S + + ++++ +E ++ ++ + D I++IPV + +
Sbjct: 12 EAAMAEQAASEEGESGDNADKQSEGVRTAELEELNAESLDDGDKRKLDAILDIPVTISME 71
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ +
Sbjct: 72 VGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 128
Query: 143 ILN 145
+++
Sbjct: 129 VIS 131
>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
400]
Length = 127
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E +++ + + E + DS I ++ D I++IPV + + +G
Sbjct: 4 EDTGDDWAAAMAEQALEEAEHVELDE-LVDDSRPITKEEAAKLDGILDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
Length = 150
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
++ + D+ + ++ + + D++ + + + DL
Sbjct: 11 ENTENTEDVSADDDWAAAMQEQEVSENQESENQENADSLGFEEFDNDPTAGKAISPELDL 70
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I++IPV + + +GS + I NL+ L++G VI LD+ GE +++ +N IA GE+ ++ E
Sbjct: 71 ILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVVVNE 130
Query: 132 DDTHFGVRVIEILNA 146
FG+R+ ++++
Sbjct: 131 ---KFGIRMTDVISP 142
>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 125
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 62/107 (57%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ + ++ + N D ++ IPV +Q++LGS M ++NL+ L +G
Sbjct: 13 SASHAEALFGTAATMAPPRAEETVGAGRNLDSVLRIPVLIQVVLGSATMPVANLMKLGRG 72
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ LD RVGE VDI +N + IA+GE+ ++EED++ FGV + EI+
Sbjct: 73 AIVPLDHRVGEPVDIMVNGRVIARGEVVVVEEDNSRFGVSLTEIVGP 119
>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
Length = 126
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+ + ++ N D+I+++PV + + +G + I NL+ L++G V+
Sbjct: 18 EAAAFQEFNNQFEDKKSSSSVGDEVNLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVV 77
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 78 ELERFAGEPLDVLVNGTLIAHGEVVVIND---KFGIRLTDVISP 118
>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
[Xanthomonas albilineans GPE PC73]
gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
flin [Xanthomonas albilineans]
Length = 112
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M + + ++ S + E + N D+I+++P+ + + +G + I NL+ L++G
Sbjct: 1 MSQNETNQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQG 60
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V+ L++ GE +D+ +N IA GE+ + + FGVR+ ++++
Sbjct: 61 SVVELERGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVSP 104
>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
Length = 98
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI
Sbjct: 8 SHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIV 67
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 68 VNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98
>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 136
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I +++ E + S I E D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
Length = 172
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ E + + + D+I++IPV + + +G+ + I NL+ L++G VI LD+
Sbjct: 67 AAPMEEFPEGSNFSQGTGPAPDLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDR 126
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +D+ +N IA GE+ ++ E FG+R+ ++++
Sbjct: 127 LAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163
>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
Length = 154
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 70 PNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 129
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 130 VVVNE---KFGIRLTDVISP 146
>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
Length = 401
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+ +E R+ + P++ P S +P+S + E N DL
Sbjct: 272 QSQMEQRTPVYEKPIETNVNKQPVEVSRAS---------FQPLSGSQDT--EVVPKNIDL 320
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+ +++E
Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380
Query: 132 DDTHFGVRVIEILNAQ 147
+FGVR+ I++ +
Sbjct: 381 ---NFGVRITGIVSNE 393
>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
Length = 124
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
S+ + + + ++ + + + + DS I + D I++IPV + + +G +
Sbjct: 2 STDDDWAAAMAEQALEEANAVGLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSFI 61
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Halanaerobium praevalens DSM 2228]
Length = 417
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+ VD S + +N +LI ++P+++ + LG M+I ++++L G +I
Sbjct: 310 SEEKVDVQSAQFPEFDQTATQPLPNNMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSII 369
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK GE VD+ +N + +AKGE+ +++E +FG RV +I++
Sbjct: 370 ELDKLAGEPVDLLVNGKLVAKGEVVVIDE---NFGFRVKDIISP 410
>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 136
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S + ++V E + S+ I E D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 136
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S + ++V E + S+ I E D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
Length = 127
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E I++ + E + DS I ++ D I++IPV + + +G
Sbjct: 4 EDTGDDWAAAMAEQAIEEAQQIELDE-LVDDSRPITKEEAAKLDSILDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
Length = 124
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
S+ + + + ++ + + + + DS I + D I++IPV + + +G +
Sbjct: 2 STDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYI 61
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 128
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ DS + + D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 29 EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119
>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
Alaska E43]
gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
Alaska E43]
gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 383
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
K+ K ++ + + +++ + P + + Q +V + + +
Sbjct: 241 KVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEVHEAA--FETLVPGDTAQVP 298
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+
Sbjct: 299 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 358
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 359 VVVDE---NFGVRITSIVS 374
>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
Length = 109
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 6 ETSAEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101
>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
Length = 155
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 131 VVVNE---KFGIRLTDVISP 147
>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
Length = 136
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I +DV + ++ S+ I E D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 130
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83
+ D V + + I+ D N + + D N + D N D I+ IPV +Q++L
Sbjct: 1 MSDKIVENVDVETGATIKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVL 60
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI
Sbjct: 61 GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120
Query: 144 LNAQ 147
+++Q
Sbjct: 121 ISSQ 124
>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
Length = 126
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
DT+ + + L + N ++ + + DS I + D I++IPV + + +G
Sbjct: 4 DDTDDWAAAMAEQALEEANAIE--LDELVDDSRPITKAEAAKLDTILDIPVTISMEVGRS 61
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 62 YISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117
>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 131
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M + L D + E + + D + I D I++IPV +
Sbjct: 1 MSEEEGLDDWAAAMAEQADEENKDAAATVADFDELEEDKD-ITPAEKRKLDTILDIPVTI 59
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R
Sbjct: 60 SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116
Query: 140 VIEILN 145
+ ++++
Sbjct: 117 LTDVIS 122
>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
2210633]
gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 136
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I ++V E + S I + D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
Length = 109
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 6 ETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101
>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
Length = 87
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE
Sbjct: 1 SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ +++E +FGVR+ EI++ +
Sbjct: 61 VVVIDE---NFGVRITEIVSPK 79
>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I ++V E + S+ I + D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
Length = 139
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 69/92 (75%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS + +++N +L+M+IPV++QI+LGS M ++NL+NL +G VITL+K++G+ +DI
Sbjct: 48 SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA+GE+ ++E+D + FGV + E+++
Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139
>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
Length = 374
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + + + +NF+LI +P+ + + +G + +++ + G +I LDK+ G+ V
Sbjct: 280 PQFAPQPVLSHEEQNNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPV 339
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
DI +N Q IA+GE+ +++E +FGVR+ EI+ Q
Sbjct: 340 DIIVNGQLIAQGEVVVIDE---NFGVRITEIIGKQ 371
>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
Length = 153
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 69 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 129 VVVNE---KFGIRLTDVISP 145
>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
Length = 246
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
PL+ ++V + E L+ D + P +S + ++ +++ + +++ + +G
Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDR--RGIEMLHGVDMEVTVEIG 183
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M + L++L+ G V+ LD+ G D+ +N + IA+GE+ +++ED FG+R+ EI+
Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240
Query: 145 N 145
Sbjct: 241 T 241
>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 130
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++ + P+ D I + D I++IPV + + +G + I N
Sbjct: 12 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121
>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
Length = 416
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKST 66
+ L + + SPT + E + + E I + E+
Sbjct: 270 ITGGEELSKTQVEMQREQATYTNESPTYHRETPRVQEKPIEVQEAIFQPLQQTSKGEELP 329
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N DLIM++P+ + ++LG + I ++NL G +I LDK E V+I +N + +A GE+
Sbjct: 330 RNIDLIMDVPLDISVVLGRTKLNIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEV 389
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E +FGVR+ +I+N
Sbjct: 390 VVIDE---NFGVRITDIVN 405
>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 127
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E I++ + E ++ + + E+ D IM+IPV + + +G
Sbjct: 4 EDTGDDWAEAMAEQAIEEAQAVELDE-LTDTAAALSEEDVAKLDSIMDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
Length = 154
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+
Sbjct: 58 SPKLNENVSLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N IA GE+ ++ E FG+R+ ++++
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146
>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
T6c]
Length = 131
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
M + L D + E N + + D I D I++IPV +
Sbjct: 1 MSEEEGLDDWAAAMAEQADEESKDGNATVAEYDELEEDKE-ISPAEKRKLDTILDIPVTI 59
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R
Sbjct: 60 SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116
Query: 140 VIEILN 145
+ ++++
Sbjct: 117 LTDVIS 122
>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
Length = 388
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
P S P +S + V+ + + + + N DLI+++P+++ ++LG
Sbjct: 265 PKPVETYSQPQVSS----PQPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLG 320
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I ++ L G +I LDK E V+I +N +KIA GE+ +++E +FGVR++ I+
Sbjct: 321 KTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIMNIV 377
Query: 145 NAQ 147
+ +
Sbjct: 378 SGE 380
>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 155
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 131 VVVNE---KFGIRLTDVISP 147
>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
Length = 111
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
N P++ DS N + +LI++IPV + + +G M I NL+ L++G ++ LD+
Sbjct: 14 QNQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 67
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G+ +D+ +N +A GE+ ++ + FGVR+ +I++
Sbjct: 68 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 103
>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
Length = 124
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ ++ + + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D
Sbjct: 27 LKDETKPLSSEEAAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 87 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
Length = 129
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++ + P+ D I + D I++IPV + + +G + I N
Sbjct: 11 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 70
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 71 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
Length = 130
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++ + P+ D I + D I++IPV + + +G + I N
Sbjct: 12 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121
>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
Length = 136
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 35 TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
+ + DVD + E + S I D IM+IPV + + +G + I
Sbjct: 16 ALGEDPAAPEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISI 75
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 76 RNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
Length = 394
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+ P + V+ + + + + N DLI+++P+++ ++LG
Sbjct: 269 SSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEISVVLGKT 328
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I +++ L G +I LDK E V+I +N +KIA GE+ +++E +FGVR++ I++
Sbjct: 329 KKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIVNIVSG 385
Query: 147 Q 147
+
Sbjct: 386 E 386
>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
Length = 124
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
S+ + + + ++ + + + + +S I + D I++IPV + + +G +
Sbjct: 2 STDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYI 61
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115
>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
SBW25]
Length = 155
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N+ + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N
Sbjct: 63 NDPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNG 122
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
IA GE+ ++ E FG+R+ ++++
Sbjct: 123 TLIAHGEVVVVNE---KFGIRLTDVISP 147
>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 136
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I ++V E + S+ I + D IM+IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
Length = 111
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ SS + N D+I+++PV + + +G + I NL+ L++G V+ L
Sbjct: 5 DALEPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ GES+D+ +N IA GE+ ++ + FGVR+ ++++
Sbjct: 65 ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103
>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
Length = 133
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+ ++ + +DV +D I ++ D I++IPV + + +G + I
Sbjct: 14 AEQADSEADDQENDDVQVAELDELTDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIR 73
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 74 NLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 124
>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 397
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
++V S + S ++ + N LI+++P+++ + LG I +++L+KG ++
Sbjct: 290 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 349
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK GE+VDI +N + +AKGE+ +++E +FGVR+ EI++
Sbjct: 350 LDKLAGETVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 389
>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii DSM 519]
gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii]
Length = 383
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
N +N DLI ++ +K+ + LG I +++ + G ++ LD+ VGE +DI +
Sbjct: 290 SPNKRTGNVPENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMV 349
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N +K+AKGE+ +++E ++G+R+ +I+ A+
Sbjct: 350 NGKKVAKGEVVVIDE---NYGIRITDIIKAE 377
>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
Length = 127
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E I++ + E ++ +S FD IM+IPV + + +G
Sbjct: 4 EDTGDDWAAAMAEQAIEEAQAVELDE-LTDESQVFPADEAVKFDTIMDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
Length = 136
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 24 NPLQDTNVS---SPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIP 76
P +D ++ + + L DVD++ + ++ S+ I E D IM+IP
Sbjct: 2 EPSEDQKLADEWAAALGEDPLAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIP 61
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + F
Sbjct: 62 VTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KF 118
Query: 137 GVRVIEILN 145
G+R+ ++++
Sbjct: 119 GIRLTDVIS 127
>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
Length = 144
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 20 MHIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P ++P + + +S+ S + + + ++
Sbjct: 18 QSFDRPEGTGETAAPGEQAGGEAASVHPAAFMALSQETQS-------GGPQSIEFLRDVE 70
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ LG+ MQI +++ L G V+ L++ GE VDI +N IA+GE+ +++E F
Sbjct: 71 VELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE---KF 127
Query: 137 GVRVIEILNAQ 147
VRV+EI+ +
Sbjct: 128 AVRVVEIVPPE 138
>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
Length = 138
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + + I +++ E + + + I + D IM+IPV + + +G
Sbjct: 12 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 72 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128
Query: 145 N 145
+
Sbjct: 129 S 129
>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
Length = 127
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+DT +E I++ E ++ + + + + D IM+IPV + + +G
Sbjct: 4 EDTGDDWADAMAEQAIEEAQAVEFDE-LNDEGQALNAEDSVKLDTIMDIPVTISMEVGRS 62
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 35 TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
+ + + DVD + + + I E D IM+IPV + + +G + I
Sbjct: 16 ALGEDPMAPEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISI 75
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 76 RNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
Length = 372
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
+K+ ++ + G++ + +++N +N++ + +K V +
Sbjct: 223 FAQKIRELV---EKTFGKTTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEE 279
Query: 61 ILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + D +L++++P+++++ LGS + + ++ L +G +I L+K GE +DI N
Sbjct: 280 PISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANG 339
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ +++E +FG+RV EI++ +
Sbjct: 340 RLIARGEVVVIDE---NFGIRVTEIVSLR 365
>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + + I +++ E + + + I + D IM+IPV + + +G
Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
Length = 215
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 66/93 (70%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ + N DLIM+IP+ +QI+LG+ MQ+S+L+NL++G I LD+++GE V+I
Sbjct: 122 AAAEPTPGSGMSANLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEI 181
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N + I +GEIT++E D T FGV+++EI ++
Sbjct: 182 MVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSR 214
>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
Length = 185
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKST 66
+ ++ S + L D ++ E Q+ + P+ ++ + +
Sbjct: 41 VASGVDEASGESEEDLADEWAAAMEEAGEDPNQEGEGGVKPAPMEEFGEGENQPKSDGKS 100
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 101 PELDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 160
Query: 127 TIMEEDDTHFGVRVIEILN 145
++ + FG+R+ ++++
Sbjct: 161 VMVND---KFGIRLTDVIS 176
>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + S I +++ E + + + I + D IM+IPV + + +G
Sbjct: 10 AEEWAAALGEDPSAPDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + + I +++ E + + + I + D IM+IPV + + +G
Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
Length = 155
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+
Sbjct: 71 PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++ E FG+R+ ++++
Sbjct: 131 VVVNE---KFGIRLTDVISP 147
>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
Length = 103
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++ + + +++IP+++ + +GS M I +L+ L +G +I LDK GE
Sbjct: 3 TDENTPPKTPPTQNEIRELGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGE 62
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N++ IA+GE ++++ +G+R+ ++++
Sbjct: 63 PLDLYVNSRLIARGEAVMVKD---RYGLRLTDVVSP 95
>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC2047]
Length = 132
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQI 81
D D ++ +E L Q + + + E + D+I++IPV + +
Sbjct: 3 DENNPDQAIAEEFQQAEQLNQAPNSGVEAAGFEQLQDEGGEVNLSPELDVILDIPVTVSM 62
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+G+ + I NL+ L+KG VI LD+ GE +D+ +N IA GE+ ++ E FG+R+
Sbjct: 63 EVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLT 119
Query: 142 EILNA 146
++++
Sbjct: 120 DVVSP 124
>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 121
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++ + P+ D I + D I++IPV + + +G + I N
Sbjct: 3 DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 62
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 63 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112
>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 129
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
++D ++ +E+ + + + ++ I D I++IPV + + +G
Sbjct: 4 VEDDWAAALAEQAEVEGGDDVQTAPLDELVDETPPINADEARKLDAILDIPVTISMEVGR 63
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 64 TNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
Length = 136
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+D N + + +++ + S PI+ D D IM+IPV + + +G
Sbjct: 19 EDPNAPDVDVDEILAAPLDELKDTSPPITEDE-------RRKLDTIMDIPVTISMEVGRS 71
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 135
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQII 82
D ++ +E + DN ++ D I ++ D I++IPV + +
Sbjct: 7 DDWAAAMAEQAESEADQEAGDNEDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISME 66
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ +
Sbjct: 67 VGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 123
Query: 143 ILN 145
+++
Sbjct: 124 VIS 126
>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
Length = 370
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ I + V+ S ++ +S N DLI+++P+++ ++LG I +++
Sbjct: 254 EERAVKNIVEKPVEVHGATFEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDIL 313
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+LS G +I LDK E V++ IN +KIA GE+ +++E +FGVR+ I++
Sbjct: 314 DLSTGSLIELDKLAEEPVEVLINGKKIAYGEVVVVDE---NFGVRITSIVS 361
>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
Length = 152
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
D + D + + + T + ++ +++ + P + + D+I
Sbjct: 22 DEQNQSGQNNDKGVDPLSARAQTIDGAKAVEMDELTSDVSPSGN--------GAPDLDVI 73
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M+IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E
Sbjct: 74 MDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE- 132
Query: 133 DTHFGVRVIEILNA 146
FG+R+ ++++
Sbjct: 133 --KFGIRMTDVISP 144
>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
824]
gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
[Clostridium acetobutylicum ATCC 824]
Length = 413
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ V+ + + + N DLI+++P+++ ++LG I +++NL G +I
Sbjct: 305 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 364
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
LDK E V+I +N +K+A GE+ +++E +FGVR+ I+N++
Sbjct: 365 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 405
>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
Length = 136
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
+ + + S I ++V N + + S+ I E D I++IPV + + +G
Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSQISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
Length = 352
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+S+P + DN DLI+++P+ + ++LG I ++++ + G VI L+K
Sbjct: 250 EVSKPAFQTLASSGVSDGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLT 309
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E ++I +N + IA GE+ ++ E +FGVR+ IL+ +
Sbjct: 310 DEPLEILLNGKLIATGEVVVINE---NFGVRITNILSQK 345
>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
17B]
gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
Eklund 17B]
Length = 385
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
K+ K ++ + ++ Q E + ++ + +
Sbjct: 241 KVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPIEVHEAAFETLVPGDTSQVP 300
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+
Sbjct: 301 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 360
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++E +FGVR+ I++
Sbjct: 361 VVVDE---NFGVRITSIVS 376
>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
Length = 220
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 66/94 (70%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ N DLIM+IP+ +QI+LGS M +S L+NL +G +I LDK++GE V+
Sbjct: 125 AAPAHQAPGSALDSNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVE 184
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +N ++IA+GEIT++E DDT FGV++IE+++ +
Sbjct: 185 IMVNGRRIARGEITVLENDDTRFGVKLIEVMSTK 218
>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
Length = 395
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ V+ + + + N DLI+++P+++ ++LG I +++NL G +I
Sbjct: 287 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 346
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
LDK E V+I +N +K+A GE+ +++E +FGVR+ I+N++
Sbjct: 347 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 387
>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
Length = 151
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++V S+ + E+ D I++IPV + + +G + I NL+ L++G V+ L
Sbjct: 45 DNVQTAELEELSEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 104
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
++ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 105 ERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 142
>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
Length = 409
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+S+P + + DN DL+M+IP+ + ++LG+ + +++ + G VI L+K
Sbjct: 307 EVSQPSFQTLDGHAQVEGDNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLT 366
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
E +DI +N + IA+GE+ ++ + +FGVR+ IL+
Sbjct: 367 DEPLDILLNGKLIAQGEVVVIND---NFGVRITNILS 400
>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 396
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69
+K P + + + E I K V+ S D+ N
Sbjct: 255 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 314
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ ++
Sbjct: 315 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 374
Query: 130 EEDDTHFGVRVIEILNAQ 147
+E +FGVR+ I++++
Sbjct: 375 DE---NFGVRIKSIISSE 389
>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
Length = 406
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N +++A
Sbjct: 319 EMPKNIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAY 378
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ +++E +FGVR+ I++++
Sbjct: 379 GEVVVVDE---NFGVRITSIISSE 399
>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 354
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + ++ ++++ N LIM++P+ + + +G ++ +++N
Sbjct: 239 ESLQSGMESRTANSVTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLN 298
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LDK+ VDI +N Q IA+GE+ ++++ +FGVR+ EI+NA+
Sbjct: 299 FNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NFGVRISEIVNAR 347
>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
Length = 111
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ + + N D+I+++PV + + +G + I NL+ L++G V+ L
Sbjct: 5 DALEPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ GES+D+ +N IA GE+ ++ + FGVR+ ++++
Sbjct: 65 ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103
>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
Length = 130
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++ + P+ D I + D I++IPV + + +G + I N
Sbjct: 12 DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121
>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
Length = 152
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 67 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146
>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
Length = 144
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+++ + + + + L+ V S + + S D+I++IPV + + +G
Sbjct: 19 MEEQGDTEESVDPDELLAATGVTGDSVELDELQDEGTPVSDPKLDVILDIPVTLSMEVGQ 78
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ ISNL+ L++G VI LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++
Sbjct: 79 TDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND---RYGIRLTDVIS 135
Query: 146 AQ 147
Q
Sbjct: 136 PQ 137
>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 129
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
L D ++ +E + +++ P+ DS D I++IPV + + +G
Sbjct: 13 LADDWAAALEEQAETV----ELEQFDAPMGGDSEQ-----QRKLDAILDIPVTISMEVGR 63
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GE +D+ +N +A GE+ ++ + FG+R+ ++++
Sbjct: 64 SQISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120
>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
Length = 412
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+N +I ++P+++ + LG I+++++ + G +I LDK GE VD+ +N + +AKGE+
Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396
Query: 127 TIMEEDDTHFGVRVIEIL 144
++EE FGVRV EI+
Sbjct: 397 VVIEES---FGVRVTEIV 411
>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
Length = 130
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83
+ +T V + D + ++ + + N+ + D N D I+ IPV +Q++L
Sbjct: 1 MSETIVDHIEAEKGPKTRPADAASFAKVETPERNSGSDTIGDDRNLDTILGIPVNIQVVL 60
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
GS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI
Sbjct: 61 GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120
Query: 144 LNAQ 147
++AQ
Sbjct: 121 ISAQ 124
>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 126
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
Q + + + L+ ++ +++ + LG + ++ +
Sbjct: 16 AQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGP 75
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
G V+ LDK GE+VD+ +N Q +A+GE+ ++ E ++G+R+ E++N +
Sbjct: 76 GSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE---NYGIRITELINPE 121
>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
Length = 124
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQ 89
S S ++ + + + E N D I+ IPV MQ++LGS +
Sbjct: 2 AQSFDYESASASEETETSPLERLAEIAARTAEESGKFANVDAILRIPVTMQVVLGSATIP 61
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+ ++EED++ FGV + EI+
Sbjct: 62 VANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVVEEDNSRFGVSLTEIVGP 118
>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
Length = 136
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+D + + + +++ + + PIS D D IM+IPV + + +G
Sbjct: 19 EDPSAPDIDVDEVLAAPLDELKDTTSPISDDE-------RRKLDTIMDIPVTISMEVGRS 71
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
Length = 368
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ N LIM++P+ + + +G ++ +++N S G V+ LDK+ VDI +N Q IA
Sbjct: 280 QSMNGNLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIA 339
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++++ +FGVR+ EI+N +
Sbjct: 340 RGEVVVIDD---NFGVRISEIVNTR 361
>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
QYMF]
Length = 393
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
K N + D P+Q S N+ ++ S +N L
Sbjct: 263 KSNQQPHLSDHDAPVQQRQQPSLENS--------KINVQPVQFQSFDQQSNRGLPENIAL 314
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++P+ + + LG +IS ++ G +I L+K VGE +DI +N Q +AKGE+ +++E
Sbjct: 315 IQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDE 374
Query: 132 DDTHFGVRVIEILNA 146
++G+R+ +I+
Sbjct: 375 ---NYGIRITDIVAP 386
>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
Length = 392
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69
+K P + + + E I K V+ S D+ N
Sbjct: 251 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 310
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ ++
Sbjct: 311 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 370
Query: 130 EEDDTHFGVRVIEILNAQ 147
+E +FGVR+ I++++
Sbjct: 371 DE---NFGVRIKSIISSE 385
>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
LFI1238]
Length = 127
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E + + E D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 28 EDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 87
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 88 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
Length = 135
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
DV +D I ++ D I++IPV + + +G + I NL+ L++G V+ L
Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 88
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 89 DRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 126
>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
Length = 101
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+SE ++ D + + N D IM+IP+++ + LG + + +++ L++G V+ L K G
Sbjct: 1 MSEKLALDEQREVPQ-PKNLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAG 59
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N++ +A+GE ++ + FG+R+++I++
Sbjct: 60 EPLDVFVNSKLVARGEAVVVND---KFGIRLLDIVSP 93
>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
Length = 129
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E + + E D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 30 EDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 89
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
Length = 446
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ +V N P + S N DL+M + + + + +G +I +++
Sbjct: 326 QEPQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDII 385
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +G VI L+K+ G VDI +N + +A+G++ ++++ +FGVR+ EI+ +
Sbjct: 386 DFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDD---NFGVRITEIVGTK 435
>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+K V+ +S+P S E N +LIM +P+++ + +G + +++ L
Sbjct: 348 TQAAGPKKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLEL 407
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+KG ++ LDK GE VD+ +N Q IA+G++ ++++ +FG+R+ EIL +
Sbjct: 408 NKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDD---NFGIRITEILADE 455
>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
Length = 138
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + + I +++ E + + + I + D IM+IPV + + +G
Sbjct: 12 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ ES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 72 RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128
Query: 145 N 145
+
Sbjct: 129 S 129
>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
Length = 136
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+D + + M Q +++++ S PIS D D I++IPV + + +G
Sbjct: 19 EDPSAPEIDVDEVMSAQLDELEDTSSPISDDE-------RRKLDTILDIPVTISMEVGRS 71
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
Length = 132
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P ++ E + + D +S + + D I++IPV + + +G + I NL
Sbjct: 21 PDDSGEAHVAELD------ELSDSKHEMSGDEKRKLDTILDIPVTISMEVGRSKINIRNL 74
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 75 LQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123
>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
Length = 129
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ ++ E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N
Sbjct: 36 AADLSEEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVN 95
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
IA GE+ ++ + FG+R+ ++++
Sbjct: 96 GTLIAHGEVVVVND---KFGIRLTDVIS 120
>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 194
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
++P + S D + S + NFDLIM+IP+ +QI+
Sbjct: 69 ESPFGGDDFGGDFGGSASSAAGMDFGS-SPSFEESPAPLGSALNSNFDLIMDIPIDVQIM 127
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 128 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 187
Query: 143 ILNAQ 147
+L+ +
Sbjct: 188 VLSTK 192
>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
[Pseudoalteromonas haloplanktis TAC125]
Length = 132
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ +S + I D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 33 DELSDAKHEISGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123
>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 412
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 30 NVSSPTNNSEMLIQK--NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
S P Q+ V+ + N DLIM++P+ + ++LG
Sbjct: 289 GYSQPQMYGGGQAQQYVQPVEVHQAAFEPLTPQNSVPPIKNIDLIMDVPLDISVVLGRTK 348
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +++NL G +I LDK E V+I +N ++IA GE+ +++E +FGVR+ I++
Sbjct: 349 KSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVVDE---NFGVRITNIVS 403
>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
Length = 99
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+N E N D I++IP+++ + LG + + +++ L++G V+ L K GE +DI
Sbjct: 3 DKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N++ +A+GE ++ E FGVR+++I++
Sbjct: 63 FVNSKLVARGEAVVVNE---KFGVRLVDIVSP 91
>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
Length = 136
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
++ + + + I +++ E + + + I + D IM+IPV + + +G
Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ I NL+ L++G V+ LD+ ES+D+ +N IA GE+ ++ + FG+R+ +++
Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126
Query: 145 N 145
+
Sbjct: 127 S 127
>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 139
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+++ + + K +V S I + + T + D I++IP+++ +++G +
Sbjct: 20 DMAKALEMEKAMKAKEEVQ--SPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRIL 77
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ L+ L++G V+ LDK GE +++ +N + + +GE+ ++ E FG+R+ +I++ Q
Sbjct: 78 VQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE---KFGIRITDIISPQ 132
>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
Length = 238
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S +++ + + + N ++ ++ + + +G + + +++L+ G V+ LD+ G
Sbjct: 138 SPKVATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGS 197
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
D+ +N + +A+GE+ +++E +G+RV EI+
Sbjct: 198 PADVLVNGRLVARGEVVVVDEV---YGIRVTEIV 228
>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
Length = 115
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ ++D E + + +K S N +LIM IPV +Q++LG M ++NL+ L +G V
Sbjct: 11 QQELDEAIEELREEKPRGTQKGASKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAV 70
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115
>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
Length = 132
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ +S + + I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 33 DELSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123
>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
Length = 96
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
E +D +L+++IP+K+ + LG + ++ G +I LDK GE VDI +
Sbjct: 1 SETRKTEVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILV 60
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N + IA+GE+ +++E +FGVR+ EI++ +
Sbjct: 61 NGKLIARGEVVVIDE---NFGVRITEIVSPK 88
>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
Length = 99
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
E+ N + I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ +
Sbjct: 10 AEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLV 69
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE ++ E FGVR+++I++
Sbjct: 70 ARGEAVVVNE---KFGVRLVDIVSP 91
>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 136
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+D + + M Q +++ + PIS D D I++IPV + + +G
Sbjct: 19 EDPDAPEVDVDEVMAAQLDELQDTGSPISEDE-------RRKLDTILDIPVTISMEVGRS 71
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 72 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127
>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
Length = 195
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D+P + S + + T NF+LIM+IP+ +QI+
Sbjct: 69 DSPFGGDDFGGDFGAGNASPAAGMNFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188
Query: 143 ILNAQ 147
+L+ +
Sbjct: 189 VLSTK 193
>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 195
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 70/97 (72%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + + NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE
Sbjct: 97 SPSFEASPAPLGSALNSNFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193
>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
Length = 250
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
++ ++ D ++ P + + E + S E+ ++ L
Sbjct: 110 SEDWTKVTLVADGTVEGWLAVRPAPAAPKSAPAEEAKTAPEGPITQSTATPEQRAESMKL 169
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++ + + +G + + ++++LS G VI LD+ G + D+ +N + IA+GEI +++E
Sbjct: 170 LYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDE 229
Query: 132 DDTHFGVRVIEILN 145
+ +G+R+ EI++
Sbjct: 230 E---YGIRITEIVS 240
>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
Length = 195
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D+P + S + + T NF+LIM+IP+ +QI+
Sbjct: 69 DSPFGGDDFGGDFGAGNASPAAGMDFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188
Query: 143 ILNAQ 147
+L+ +
Sbjct: 189 VLSTK 193
>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
Length = 115
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92
+ +E + ++D E + + +K S N +LIM IPV +Q++LG M ++N
Sbjct: 2 SKETEDKNMQQELDEAIEELREEKPRSAQKGPSKPNLELIMGIPVDVQVVLGGTTMPVAN 61
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L+ L +G VITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 62 LMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115
>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
870]
gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
Tulya]
gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
86/8/59]
gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M163/99/10]
gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M292/94/1]
gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
Ether]
gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
C68]
gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
Length = 115
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V
Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115
>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
Length = 135
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
+ NP V S + + + + P + + + I++IPV
Sbjct: 2 SEQNTVNPESGEIVQSADAPASSAV--DPSVTGALPGVMARLGQGTEGGADIERILDIPV 59
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + +G I+N++ L+ G V+ LD + G +D+ IN IA+GE+ ++ + FG
Sbjct: 60 QLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVVND---RFG 116
Query: 138 VRVIEILNA 146
+R+ +I+
Sbjct: 117 IRLTDIVTP 125
>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
Length = 179
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQII 82
P + + + P + +++ + N DLIM+IP+ +QI+
Sbjct: 53 EPATGLSAFGDEFGGDDAGSAFGAGDFGGPSAFAETAAPGSALSANLDLIMDIPIDVQIV 112
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LGS MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT++E DDT FG+++IE
Sbjct: 113 LGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVLEHDDTRFGIKLIE 172
Query: 143 ILNAQ 147
+ N +
Sbjct: 173 LSNNK 177
>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
Length = 100
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + N D I++IP+++ + LG + + +++ L++G V+ L K GE +D+
Sbjct: 4 TGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDV 63
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N++ +A+GE ++ + FG+R+++I++
Sbjct: 64 FVNSKLVARGEAVVIND---KFGIRLVDIVSP 92
>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
Length = 136
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
E ++ + D + + + + +++ + ST N D ++++
Sbjct: 4 EEKNQATEEAGDDWSAAL-ADQGKDSPAFEELEASGA--AGGGGAAPSASTQNLDFLLDV 60
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+++ + LG M I+ L+ L++G V+ LDK G SV+I +N + + KGE+ ++ E
Sbjct: 61 PLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE---R 117
Query: 136 FGVRVIEILN 145
FG+RV EI++
Sbjct: 118 FGIRVTEIIS 127
>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
Length = 138
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 60/85 (70%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E N D ++ IPV MQ++LGS M +++L+ L +G VI LD RVGE VDI +N + +A
Sbjct: 50 ENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVA 109
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GEI ++E+D++ FGV + EI+ A+
Sbjct: 110 RGEIVVVEDDNSRFGVSLTEIVGAK 134
>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 347
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+ P + +++ NI + + + + + +LI++IP+K++++LG I
Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+++ G +I LD+ V E V++ +N +AKGEI ++ E +FG+++ +IL+ +
Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGE---NFGIKINQILSPK 341
>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 250
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
++ D ++ P + + E + S E+ ++ L+ ++ +
Sbjct: 117 TLVADGTVEGWLAVRPAPATPKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMT 176
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ +G + + ++++LS G VI LD+ G + D+ +N + IA+GEI +++E+ +G+
Sbjct: 177 LTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDEE---YGI 233
Query: 139 RVIEILN 145
R+ EI++
Sbjct: 234 RITEIVS 240
>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
KN400]
Length = 101
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E N + I++IP+++ + LG + + +++ L++G V+ L K GE +D
Sbjct: 4 FTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +N++ +A+GE ++ E FGVR+++I++
Sbjct: 64 VFVNSKLVARGEAVVVNE---KFGVRLVDIVSP 93
>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
Length = 115
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V
Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115
>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
Length = 131
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E ++ D I D I++IPV + + +G + I NL+ L++G V+ LD+ GES
Sbjct: 32 EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 92 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122
>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
Length = 179
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 71/99 (71%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ ++ + +DN DLIM+IP+ +QI+LG+ M +S L++L +G I LD+++
Sbjct: 79 AATPQVAGIKAPLGSGLSDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GE V+I +N ++IA+GEIT++E+DDT FGV++IE+++ +
Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVMSTR 177
>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
'5-way CG']
Length = 125
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +
Sbjct: 37 TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 96
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE+ ++ + +GVR+ +I++
Sbjct: 97 ARGEVVMVND---KYGVRLTDIVSP 118
>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
16M]
gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
9-941]
gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
2308]
gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
292]
gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
16M]
gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
bv. 1 str. 9-941]
gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Brucella melitensis biovar
Abortus 2308]
gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
Length = 106
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V
Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 61
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106
>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
8052]
gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
8052]
Length = 398
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ V+ + N DLI+++P+ + ++LG I +++NL G +I
Sbjct: 291 QQPVEVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIE 350
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LDK E V+I +N ++IA GE+ +++E +FG+R+ I+++
Sbjct: 351 LDKLAEEPVEILVNGKQIALGEVVVVDE---NFGIRITNIVSS 390
>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
Length = 115
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V
Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAV 70
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115
>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
Length = 103
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
++E I SD N N + I++IP+++ + LG + + +++ L++G V+ L K G
Sbjct: 2 VNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAG 61
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
E +D+ +N++ +A+GE ++ + FG+R+++I++
Sbjct: 62 EPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVSP 95
>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
Length = 108
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 22 RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81
Query: 127 TIMEEDDTHFGVRVIEILNA 146
I+EED++ FGV + E++
Sbjct: 82 VIVEEDNSRFGVSLTEVVGP 101
>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
Length = 120
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 62/104 (59%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
D S+ + + + + +M IPV +Q++LGS M ++NL+ L +G ++
Sbjct: 11 TAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIV 70
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
LD RVGE VD+ +N + IA+GE+ ++EED++ FGV + EI+
Sbjct: 71 PLDHRVGEPVDVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGP 114
>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 108
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 22 RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81
Query: 127 TIMEEDDTHFGVRVIEILNA 146
I+EED++ FGV + E++
Sbjct: 82 VIVEEDNSRFGVSLTEVVGP 101
>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 132
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86
+T++S+ K + + + + E S N + I+ IPV +Q++LGS
Sbjct: 6 ETDLSNAAAEHASEPFKPEAASFGKLADLAARAAEETSRLTNLEPILRIPVTVQVLLGSA 65
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+
Sbjct: 66 TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124
>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
Length = 128
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ + D + ++ V++ LGS M+I +++ L G V+ LD+ GE V++TIN
Sbjct: 33 RDQPIGNGRQGIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTIN 92
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA+GE+ +++E F VR+ EI++ +
Sbjct: 93 KTLIARGEVVVVDE---KFAVRITEIVSPE 119
>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
Length = 247
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ + + DN L+ ++ + + +G + + ++ L G VI LD+ G
Sbjct: 150 AAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGS 209
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
D+ +N + IA+GE+ +++ED +G+R+ EI++
Sbjct: 210 PADLMVNGRLIARGEVVVIDED---YGLRITEIVD 241
>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
Length = 106
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L G V
Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAV 61
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+
Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106
>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
Length = 121
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISN 92
+ + K++ + + I + + E++ N D +++IPV++QI+LGS M +S
Sbjct: 4 TPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSE 63
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
L+ L +G ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI
Sbjct: 64 LMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114
>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 195
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 70/97 (72%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ + + NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE
Sbjct: 97 TPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193
>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
Length = 132
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ + + + + D I++IPV + + +G + I NL+ L++G V+ LD+ GE
Sbjct: 33 DELDDSKHELSGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123
>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
Length = 101
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+
Sbjct: 14 PQPKNLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVAR 73
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE ++ + FG+R+++I++
Sbjct: 74 GEAVVVND---KFGIRLLDIVSP 93
>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
Length = 129
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
+ + L + D D+ + E + +ST + D IM+IPV + + +
Sbjct: 2 SSEQDMADEWAAALDESGDTDSSTVNNVELDDFQESGSDGESTVSIDSIMDIPVTISMEV 61
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ ++
Sbjct: 62 GRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDV 118
Query: 144 LN 145
++
Sbjct: 119 IS 120
>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
Length = 179
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 71/99 (71%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ ++ + ++N ++IM+IP+ +QI+LG+ M +S L++L +G I LD+++
Sbjct: 79 AAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GE V+I +N ++IA+GEIT++E+DDT FGV++IE+L+ +
Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTR 177
>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
Length = 130
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + ++ P +++ ++ + ++ + ++PV++ + +G M + + L G
Sbjct: 1 MSHEMELPAFDRPTAANGSHTGQ---NDLGRLSDVPVELAVEIGRTRMTVGETLELRPGS 57
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ L++ GE VD+ +N IA GE+ +++E+ FG+R+ ++L A
Sbjct: 58 IVVLNRMAGEPVDLLVNGTPIAHGEVVVIDEE---FGLRITDVLGA 100
>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
Length = 101
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ +++ E T N + I++IP+++ + LG + + +++ L++G V+ L K GE +D
Sbjct: 4 LDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +N++ +A+GE ++ E FG+R+++I++
Sbjct: 64 VFVNSKLVARGEAVVVNE---KFGIRLVDIVSP 93
>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
LSv54]
gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
psychrophila LSv54]
Length = 123
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E + + + D + ++P+++ + +G + I +L+N+ +G VI L+K G+
Sbjct: 23 ENTEQEHTTLENNEARSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDP 82
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N++ IA+GE ++ + FG+R+ ++++A
Sbjct: 83 LDLYVNSRLIARGEAVMIGD---KFGIRLTDVVSA 114
>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 138
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+D + + M Q +++++ SE +++ + D I++IPV + + +G
Sbjct: 19 EDPDAPEIDVDEVMSAQLDELEDTSE-----QSSLSDDERRKIDSILDIPVTISMEVGRS 73
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++
Sbjct: 74 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 129
>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 131
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86
++N+++ +E K+D + + + + E + N + I+ IPV +Q++LGS
Sbjct: 6 ESNLNNVAAANEAEPPKSDPASFGKLADLAARAVEETNRLTNLEPILRIPVTVQVLLGSA 65
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+
Sbjct: 66 TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124
>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
Length = 82
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++
Sbjct: 1 DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60
Query: 130 EEDDTHFGVRVIEILNA 146
E FG+R+ ++++
Sbjct: 61 NE---KFGIRLTDVISP 74
>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
Length = 125
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGS 85
+ + P E +EP S + ++ + + + +IPVK+ ++GS
Sbjct: 2 STNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGS 61
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M +S L+ L +G V+ LD+++GE+VDI NN+ IA+GE+ +++++ H GV + EI++
Sbjct: 62 ATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDN--HIGVTMTEIIS 119
Query: 146 A 146
+
Sbjct: 120 S 120
>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
Length = 113
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I
Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
TLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ +
Sbjct: 70 TLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111
>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
Length = 123
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 63/94 (67%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S + ++ + + I+ IPV MQ+I+GS M +SNL+ L +G ++ LD+++GE VD
Sbjct: 24 ASEEPRAGMDVDSRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVD 83
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +N + IA+GE+ ++E+D+T FGV + EI+ +
Sbjct: 84 VVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEPR 117
>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
Length = 178
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 70/97 (72%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + + NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE
Sbjct: 80 SSSFEASPAPLGSALNSNFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGE 139
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 140 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 176
>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
Length = 126
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+V P ++ + ++ E T + + ++P+++ + +G +
Sbjct: 5 DVLEPQRSNTLNTEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARIL 64
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +L+ + +G V+ LDK GE +D+ +N + IA+GE + + FG+++ E+++
Sbjct: 65 LKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGEAVKVGD---KFGIKLTEVVS 117
>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
Length = 106
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L G V
Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAV 61
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
ITLDK++G+ VDI +N + IA+GE+ ++E+D FGV + EI+
Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSPRFGVSLTEIIGK 106
>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
Length = 113
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +
Sbjct: 10 AEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
ITLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ +
Sbjct: 69 ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111
>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
Length = 113
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +
Sbjct: 10 VEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
ITLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ +
Sbjct: 69 ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111
>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 250
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + D+
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
Length = 250
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + D+
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+N + IA+GEI +++E+ +G+R+ EI++
Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240
>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
Length = 210
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 61/90 (67%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N
Sbjct: 120 ETAPGSGMAANMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVN 179
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ I +GEIT++E D T FGV++IEI ++
Sbjct: 180 GRVIGRGEITVLEGDVTRFGVKLIEIKGSR 209
>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 115
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D +S+ S +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD+
Sbjct: 16 ADGMSDDFSPPEIPDKPRSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDR 75
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+VGE++DI +NN+ +A+GE+ ++++ GV + EI+ +
Sbjct: 76 KVGEAIDIYVNNRLVARGEVVVVDD---RLGVTMTEIIKS 112
>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
Length = 105
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
D ++ + S +K+ ++ I +IPV + +LG M I+ L+ L +G V+ L
Sbjct: 4 KDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVEL 63
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
D+++G+ +DI +NN+ IA+GE+ +++E T GV + EI+ ++
Sbjct: 64 DRKIGDPIDILVNNRLIARGEVVMVDE--TRLGVTMTEIVKSE 104
>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
Length = 198
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ PI+ ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE
Sbjct: 102 AAPIAGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N + I +GEIT++E D T FGV+++EI ++
Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSK 197
>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
Length = 110
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 59/91 (64%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ + N + I+ IPV +Q++LGS M +S+L+ L +G VI LD RVGE VD+
Sbjct: 15 GEEPPGRANVSRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVV 74
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IA+GEI ++E+D++ FGV + EI+
Sbjct: 75 VNGRIIARGEIVVVEDDNSRFGVSLTEIVGP 105
>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
Length = 113
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I
Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
TLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ +
Sbjct: 70 TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111
>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
Length = 386
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + N + ++NIP+++ + LG+ M + +++ L G VI L+K GE++++ IN+
Sbjct: 295 QPSPQGDSINIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMIND 354
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ +++E +FG+R+ EI++ +
Sbjct: 355 ELIARGEVVVIDE---NFGIRITEIISPR 380
>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
Length = 210
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ PI ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE
Sbjct: 114 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 172
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N + I +GEIT++E D T FGV+++EI +
Sbjct: 173 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 209
>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium saccharolyticum WM1]
Length = 456
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+V I + + E+ +N +LIM +P+++ + +G + ++ +KG ++ LD
Sbjct: 356 NVKPIPQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILD 415
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
K GE VD+ +N + IAKG++ ++++ +FG+R+ EI
Sbjct: 416 KLAGEQVDLYVNGRCIAKGDVVVVDD---NFGIRITEI 450
>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
Length = 113
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I
Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
TLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ +
Sbjct: 70 TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111
>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 116
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT V P NS + DVD E +S + + + + ++PV++ +LG
Sbjct: 5 DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD++VGE++DI +NN+ IA+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114
>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
Length = 119
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ + + + + S+ + + + + ++PV++ +LG M +S+L+ L G
Sbjct: 13 PDLNETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPG 72
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 73 TVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117
>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
Length = 114
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ ++ +K ++ + P DS + NF L+M++ +++ + LG +I +++
Sbjct: 4 DDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+S+G +ITLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ +
Sbjct: 63 AMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKIK 112
>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
ferrodiazotrophum]
Length = 125
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D PL + ++ ++ + + EP + ++ + D ++++P+ + +
Sbjct: 3 DEPLDEEALAR-AWEEDLAKGAAEEEKAPEP----ALPRTHEAPLSLDYLLDVPLTISVR 57
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G M I +L+ L +G V+ LDK GE +++ IN+Q +A+G++ ++ + +G+R+ +
Sbjct: 58 VGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND---KYGIRLTD 114
Query: 143 ILNA 146
I++
Sbjct: 115 IVSP 118
>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
Length = 116
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ E + E S+ + + + DL+M++ V + + +G + I +L+
Sbjct: 1 MSDEETTEAVAAQPPEELHSTAAPSPSAGGKIDLDLLMDVQVTLSVEIGRTRLPIKDLLA 60
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L++G +++LD+ V E +D+ +N IA+GE+ E FG+R+I++++
Sbjct: 61 LNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV---ESAGQFGLRLIDVVSP 108
>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
Length = 250
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81
Q + S P ++ D + ++ S E+ + + F L+ ++ +++++
Sbjct: 121 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 180
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E FGVR+
Sbjct: 181 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 237
Query: 142 EILNA 146
+ +
Sbjct: 238 NLASE 242
>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
Length = 116
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D V P N DV E +S + + + + ++PV++ +LG
Sbjct: 5 DGQVPLPDLNGADAPPLADVGYHEEEQTS-------RVAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 110
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + ++ + + + +IPV++ +LG MQ+S L+ L +G V+ LD+++GE+V
Sbjct: 15 PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
DI +NN+ +A+GE+ ++ E+ GV + EI+
Sbjct: 75 DIYVNNRLVARGEVVMVGEN--RLGVTMTEIVKT 106
>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
Length = 114
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ S++ +K ++ + P D+ + NF L+M++ +++ + LG +I +++
Sbjct: 4 DDKSDIGEEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+S+G +ITLDK GE VDI +N + IAKGE+ +++E +FGVR+ EI+ +
Sbjct: 63 GMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITEIIKIK 112
>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
Length = 116
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQIS 91
++ + D+++ P+ +D E+ T + + + ++PV++ +LG M +
Sbjct: 2 GENDGQVPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVG 61
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 62 ELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 128
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
+ ++ P + I++ + E S+ N +IMNIPV +QIILGS
Sbjct: 7 EADLDQPDEQLDRAIEELRG-VLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTE 65
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M +S+L+ L KG + L++R+GE VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 66 MPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122
>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
Length = 132
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
T + N + ++ + +S + D ++ + + + + ++PV + +LG M
Sbjct: 14 TTPTGEPNGNGQVLSDLPLAPVSRRTAGDGPE-TQRPSRDLEAVYDVPVLVSAVLGRSTM 72
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
Q+S L+ L +G V+ LD++ G+ +DI +NN+ IA+GE+ +++E T G+ + EI+ +
Sbjct: 73 QVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 128
>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
Length = 131
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 64/117 (54%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+ + P + + +D + + DL++++ V MQ++LGS M
Sbjct: 3 DPNDPHGSEIEHSGQPYMDEEGGEEDDRRPDFRGADKMDLDLVLDVSVTMQVVLGSARMS 62
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI ++++DD FGV + E+
Sbjct: 63 VSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLDQDDQQFGVTLTEVATP 119
>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
Length = 236
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81
Q + S P ++ D + ++ S E+ + + F L+ ++ +++++
Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 166
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E FGVR+
Sbjct: 167 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 223
Query: 142 EILNA 146
+ +
Sbjct: 224 NLASE 228
>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
Length = 98
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
Length = 98
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
Length = 119
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 35 TNNSEMLIQKNDVDNISEP-----ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
N+ + + D++ I P +D + + + + ++PV++ +LG M
Sbjct: 3 ENDGQDQVPLPDLNAIEAPPLDQAAYADDEERSARIASDLEAVFDVPVQVSAVLGRSKMD 62
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 63 VSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117
>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
BAC17H8]
Length = 110
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ ++ ++ + + D+ S +N L+ NI V + + +G ++I +L+ L++G
Sbjct: 1 MSEETELAEDAATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGS 60
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI LD+ G+ +DI N IAKGE+ ++ E FG+R EI++
Sbjct: 61 VIELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFTEIVDP 103
>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
Length = 123
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 47 VDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
V + SEP S + + +L+ N+ + + LG M + L++L+ G V
Sbjct: 15 VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ L++ G +D+ +N IA+GE+ +++E+ FGVR+ EI+
Sbjct: 75 VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVGP 116
>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
Length = 98
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG
Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++ E FG+R +I+ +
Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92
>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
Length = 250
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+L+ + +++ LG + + L++LS G VI LD+ G D+ +N + IA+GE+ +
Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227
Query: 129 MEEDDTHFGVRVIEILNA 146
++E +FG+RV EI+
Sbjct: 228 IDE---NFGIRVTEIIKP 242
>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 110
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
K+ + + + ++PV + +LGS M I +L+ L+ G V+ LD++VGE++D+ +NN
Sbjct: 25 APTTPKTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNN 84
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 85 RLVARGEVVLVED---RLGVTMTEIVKGE 110
>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
Length = 106
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
++ ++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +D
Sbjct: 12 RTAGDGPETQRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPID 71
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I +NN+ IA+GE+ +++E T G+ + EI+ +
Sbjct: 72 IFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 102
>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
Length = 198
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ PI ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE
Sbjct: 102 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+I +N + I +GEIT++E D T FGV+++EI +
Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 197
>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 108
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
ND E + +S + + + +IPV++ +LG MQ++ L+ L +G V+ L
Sbjct: 7 NDFKPDGEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+
Sbjct: 67 DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105
>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
Length = 114
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ +++ +K ++ + P D+ + N L+M++ +++ + LG +I +++
Sbjct: 4 DDKNDVGEEKPEIKGVKLPDLIDTLPEGVDPS-NLGLLMDVSMQVTVELGRTERKIKDIL 62
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+S+G +ITLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ +
Sbjct: 63 GMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE---NFGVRITEIIKIK 112
>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
Length = 101
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S + +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D
Sbjct: 8 ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 67
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +NN+ +A+GE+ +++E GV + EI+
Sbjct: 68 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 96
>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
Length = 115
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ D +S+ + + + + + + ++PV++ +LG M + L+ L G
Sbjct: 9 PDLNSADAPPLSDDVGYNEEEHASRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 69 TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112
>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
48]
gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
48]
Length = 110
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ + ++ K+ + + ++PV + +LG M +S L+ L +G V+ LD++VGE+
Sbjct: 14 QAMVPGGDDEGTKAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEA 73
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+DI +NN+ +A+GE+ +++E GV + EI+ ++
Sbjct: 74 IDIYVNNRLVARGEVVVVDE---RLGVTMTEIIKSE 106
>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
Length = 112
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
I ++++ + P D + + + + ++PV++ +LGS M +S+L+ L+ G V
Sbjct: 9 IPLDELEVPAAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTV 68
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+
Sbjct: 69 LELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110
>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
Length = 110
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S + +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D
Sbjct: 17 ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 76
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +NN+ +A+GE+ +++E GV + EI+
Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105
>gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
Ellin6076]
gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
Ellin6076]
Length = 282
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
+S+ + L + PL +S + + + D EP + N++
Sbjct: 147 LSFGETTLVPLWIGFSAPL----ISVICSPAAGQPEAAPEDAGGEPHTVKRNDM----PP 198
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+L++++ + + I G + + +++ L+ G ++ L++ V E V++ +N+ IA+GE+
Sbjct: 199 TMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVV 258
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++E ++GVR+ +I+N Q
Sbjct: 259 VVE---GNYGVRIQQIVNRQ 275
>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
Length = 293
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
N +L+ ++ +++ + LG + +++++ L+ G +I L+K VGE ++I N + IA+GE
Sbjct: 207 KGNLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGE 266
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+++E FGVR+ ++
Sbjct: 267 AVVIDE---QFGVRITSLVT 283
>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
Length = 116
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D+ V P NS DV + S + + + + ++PV++ +LG
Sbjct: 5 DSQVPLPDLNSADAPPLGDVGYSDDEQVS-------RIAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
Length = 292
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ +DV + N S N DL++++ + + + +GS M + +++ L
Sbjct: 178 ETSSEKTDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELG 237
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G +I L++ E V++ +NN+ IA+GE+ +++ +FG+R+ EI++
Sbjct: 238 PGKIIELEEYADEPVELLVNNKVIARGEVVVVD---GYFGLRIQEIVSK 283
>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
Length = 110
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S I +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D
Sbjct: 17 ASEMPVEIADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAID 76
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +NN+ +A+GE+ +++E GV + EI+
Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105
>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 416
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISN 92
P +M Q++ ++ S DS + + +N DLI ++ +++ + LG I+
Sbjct: 299 PMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITVELGKTVKPINE 358
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+++ G V+ LDK VGES+DI N +KIA GE+ +++E ++G+R+ +I+
Sbjct: 359 ILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDE---NYGIRITDIVKP 409
>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 84
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M++ + + + LG + I ++ L +G +I L K GE VD+ +N + IAKGE+ +++E
Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60
Query: 133 DTHFGVRVIEILNA 146
FGVRV +I+++
Sbjct: 61 ---FGVRVTDIVDS 71
>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 116
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT V P N+ +DV + + + + + + ++PV++ +LG
Sbjct: 5 DTQVPLPDLNAADAPSIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
Length = 112
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ ++ + + P + + DL+M++PV + + +G M I L+ L+ G
Sbjct: 1 MAEEQEDMTTATPPELSEGAVEGTGEIDLDLLMDVPVYLTVEVGRRRMTIKELLALASGS 60
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V+T D+ V E +D+ +N +A+GE+ + FG+R++++++ +
Sbjct: 61 VVTFDRSVTEPMDLMVNGTLVARGEVV---SAEGQFGLRLVDVVSPK 104
>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 105
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN
Sbjct: 18 EYTSPGIAKDLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNN 77
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +A+GE+ ++E+ G+ + EI+ +
Sbjct: 78 RLVARGEVVVVED---RLGITMTEIIKS 102
>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
Length = 115
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ D I+ + + + + ++PV++ +LG M + L+ L G
Sbjct: 9 PDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 69 TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112
>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 116
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT V P N+ +DV + + + + + + ++PV++ +LG
Sbjct: 5 DTQVPLPDLNAADAPTIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
Length = 164
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ + ++ T D +M+IP+ +++++G +QI L+NL G V+ LD
Sbjct: 51 PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ E VDI +N + IAKGE+ ++ E FGVR+ EI + +
Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGE---KFGVRITEIYSEE 149
>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 115
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P S K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++
Sbjct: 23 PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
DI +NN+ +A+GE+ +++E GV + EI+
Sbjct: 83 DIFVNNRLVARGEVVLVDE---RLGVTMTEIIK 112
>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
39073]
Length = 395
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
S+ N DLI+++P+ +++ILG+ +I ++++L+ G ++ LD+ V E V IT+N IA+
Sbjct: 307 ASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQ 366
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ I+ E +FGVR+ IL
Sbjct: 367 GEVVIVNE---NFGVRITHILEP 386
>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
Length = 189
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+ +L + L + P N + + E + D
Sbjct: 58 EQSLRQAEQQLAAALSEELP--PRNMRGLPPGEAPARFEFEEFGTPFPTRAAAPVFPLDA 115
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++ + ++I LG + I ++ L +G V+ LDK G+ VDI +N + +A+GE+ ++ +
Sbjct: 116 LQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLND 175
Query: 132 DDTHFGVRVIEILN 145
+F VR+ EIL
Sbjct: 176 ---NFCVRIAEILT 186
>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magneticum AMB-1]
Length = 108
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
ND E + +S + + + +IPV++ +LG MQ++ L+ L +G V+ L
Sbjct: 7 NDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+
Sbjct: 67 DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105
>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
SS3/4]
Length = 445
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + P S + + + N +++M +P+++ + +G + +++ ++G ++ LDK
Sbjct: 342 IRPANAPGLESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDK 401
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
GE D+ +N Q +A+G+I ++E+ +FG+R+ +I+
Sbjct: 402 MAGEQADLYVNGQCVARGDIVVVED---NFGIRITDIVT 437
>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
Length = 109
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ + + +IPV++ +LG MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 27 GPAKDLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 86
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++E+ G+ + EI+ +
Sbjct: 87 GEVVVVED---RLGITMTEIIKS 106
>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
Length = 115
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P S K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++
Sbjct: 23 PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
DI +NN+ +A+GE+ ++EE GV + EI+
Sbjct: 83 DIFVNNRLVARGEVVLVEE---RLGVTMTEIIK 112
>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
Length = 116
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
DT V P N+ +D+ + + + + + + ++PV++ +LG
Sbjct: 5 DTQVPLPDLNAADTPAIDDIG-------YSEDEQVSRIASDLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+
Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114
>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
Length = 116
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D V P N M DV + + ++ + + + ++PV++ +LG
Sbjct: 5 DGQVPLPDLNGPMPPTGTDVG-------YNEDEYAARAAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 58 MDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLVED---KLGVTMTEIIKTE 114
>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
Length = 109
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +KS + + ++PV + +LG M ++ L+ L++G V+ LD++VGE++DI +NN
Sbjct: 20 DEAGDKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNN 79
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 80 RLVARGEVVVVED---RLGVTMTEIIKTE 105
>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
baltica WH47]
Length = 141
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
N +S + + +++ ++ P + S N L ++ + DL+ + + ++I LG
Sbjct: 24 NEASQSLAAATGDKESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQ 83
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
M++ ++ L G V+ LDK G+ VDI +N + IA+GE+ +M + +F VRV E++ A
Sbjct: 84 MRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMND---NFCVRVTELVGA 139
>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
Length = 238
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
LI N+ + + + +G M + + + L G VI LD+ G D+ +N + IA GE
Sbjct: 156 PARLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGE 215
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ ++++D + VR+ IL+
Sbjct: 216 VVVVDQD---YAVRITRILDT 233
>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
Length = 141
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ N +S N + I++IP+++ + LG I ++V+L+ G ++ D+ VGE VDIT+N
Sbjct: 48 AANAGMQSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLN 107
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ ++ E HFGVR+ +I+ Q
Sbjct: 108 GKLIARGEVVVVGE---HFGVRISQIITPQ 134
>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
Length = 171
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 19 SMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIM 73
+ +D P ++ T +SP + D D +++ ++ + S + + D + +
Sbjct: 2 TSELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLW 61
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+ + ++LG + +S+L+NLS GD ++LD+R+G+ V+I N IA G++ ++E
Sbjct: 62 SIPLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESG 121
Query: 134 THFGVRVIEILNA 146
FGVR+ ++ A
Sbjct: 122 ERFGVRLTKLSGA 134
>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
Length = 102
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ + + + TD + NI V+M + +G + IS L+ L++G V+ LD+ GE
Sbjct: 3 EQKMENQDKDPKGPETDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGE 62
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+DI +N IAKGEI ++ E FG+R +I++ +
Sbjct: 63 PLDILVNGTLIAKGEIVMVGE---RFGIRFSDIVDPE 96
>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
CGA009]
gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
TIE-1]
gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
Length = 115
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D V P N DV + + + + + + ++PV++ +LG
Sbjct: 5 DGQVPLPDLNGADAPPLADVG-------YQEDEQISRVAADLEAVFDVPVQVSAVLGRSK 57
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A
Sbjct: 58 MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKA 113
>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
Length = 111
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
DV + + +D + + NFDL+ + +++ + +GS M ++ L+ L +G VI L
Sbjct: 2 TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
D+ + +DI N IAKGEI ++ +G++V E++
Sbjct: 62 DRAATDLLDIYANGTLIAKGEIVSVD---GRYGIQVAEVVAP 100
>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 116
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
KS + + + ++PV + +LG+ M + +L+ L G V+ LD++VGE++DI +NN
Sbjct: 30 GPPAPKSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNN 89
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +A+GE+ ++EE GV + EI+ +
Sbjct: 90 RLVARGEVVLVEE---RLGVTMTEIVKS 114
>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 107
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 23 GPRSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 82
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
A+GE+ ++E+ GV + EI+
Sbjct: 83 ARGEVVVVED---RLGVTMTEIIKT 104
>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 119
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ D I N+PV +Q++LG M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+
Sbjct: 34 QDRDELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIAR 93
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
GE+ I+++ GV + EI+ A+
Sbjct: 94 GEVVIVDD--GRLGVTMTEIVKAE 115
>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 330
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ ++ N +++++I + + I +GS + + +L+ L G ++ LDK+ G+ V++ +N +
Sbjct: 239 LNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKV 298
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA+GE+ +++ +FG+R+ EIL+ +
Sbjct: 299 IARGEVVVID---ANFGLRINEILSKR 322
>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
Length = 111
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S + +K + + ++PV + +LG M ++ L+ LS G ++ LD++VGE++D
Sbjct: 17 ASEMPIELSDKIASDLAPVFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAID 76
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I +NN+ +A+GE+ +++E GV + EI+
Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105
>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
Length = 212
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ +L+ ++ + ++I LG M + +++ L +G V+TLDK G+ VDI +N
Sbjct: 123 AAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVN 182
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ IA+GE+ ++ + +F VRV E+L+
Sbjct: 183 GRLIARGEVLVLND---NFCVRVAELLS 207
>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
Length = 125
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + L ++ + + DS ++ EK + IP+++++++G +++ L+
Sbjct: 13 SMWEQALKEQQEAEGRHGEGQGDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELL 68
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+L G V+ LD V VDI +N + +AKGEI ++E+ FGVR+ +I+ +
Sbjct: 69 HLGPGSVVELDNHVESPVDILVNGKLVAKGEIVVVED---KFGVRITDIIARE 118
>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
Length = 116
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
KS + + + ++PV + +LG+ M I +L+ L G V+ LD++VGE++DI +NN
Sbjct: 30 GPPSPKSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNN 89
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +A+GE+ ++EE GV + EI+ +
Sbjct: 90 RLVARGEVVLVEE---RLGVTMTEIVKS 114
>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
Length = 249
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ DL+ ++ +++ + +G M + L++L G+V+ LD+ D+ +N
Sbjct: 155 PQARTQRGSLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGT 214
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145
IA+GE+ +++ED FG+R+ EI+
Sbjct: 215 LIARGEVVVVDED---FGLRISEIVT 237
>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
Kuenenia stuttgartiensis]
Length = 120
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P DS E N DLI+++ V + + LG M I +++ LS+G ++ L+K G V
Sbjct: 23 PEEMDSQKGGEG-MPNLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPV 81
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + + +A+GE+ ++EE FG+++ I Q
Sbjct: 82 ELLVRGKLLARGEVVVVEE---RFGLKITAICGPQ 113
>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 135
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+++ +V N+ E+ K + + I E SS N +K +++ +LI++IP+KM I LG
Sbjct: 11 IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M I +L+ L + ++TLD +GE +DI IN+ +A+GE+ +M+E +G+++++I+
Sbjct: 69 TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125
Query: 146 AQ 147
+
Sbjct: 126 PE 127
>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 120
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ +L + + DL++N+P+++ + LG M N++ LS+G VI L++ VGE + I
Sbjct: 21 DETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTI 80
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IN + A GE ++ ++ FGVR+ ++N +
Sbjct: 81 YINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111
>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
HTCC2083]
gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
HTCC2083]
Length = 99
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ D + NI V+M I +G + I+NL+ L++G V+ LD+ GE +DI +N
Sbjct: 7 ATPAQGSEKDKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVN 66
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IAKGE+ ++ E FG+R +I++ +
Sbjct: 67 GTMIAKGEVVMVGE---RFGIRFSDIVDPE 93
>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
Length = 107
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V
Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV
Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGV 107
>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
Length = 227
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N++ + +++ ++ + ++I LG + I +V+L G V+ LDK G+ VDI +N
Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ ++ + +F VRV EIL +
Sbjct: 201 RLIARGEVLVLND---NFCVRVAEILTPK 226
>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
Length = 320
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71
D P Q+T +P + + + I+ PI I E+
Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK---- 246
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++I + + + LGS + ++++L +G ++ LDK+ G D+ +N + I +G++ + +
Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306
Query: 132 DDTHFGVRVIEILNAQ 147
FG R+IE++ +
Sbjct: 307 ---RFGARIIEVVGKR 319
>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
Length = 125
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 48 DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK
Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE +D+ +N + +AKGE+ ++ +G+R++++++
Sbjct: 81 LAGEPLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117
>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
Length = 137
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
++++D+ P ++ L K N +L+M++P+++ + LGS QI +L+ L+KG ++
Sbjct: 33 RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+K + ++I +N++ +A GE+ ++++ G+R+ +I++ +
Sbjct: 90 LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130
>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 110
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++ EKS + + ++PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +N
Sbjct: 20 ADEGGEKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVN 79
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N+ +A+GE+ ++E+ GV + EI+ +
Sbjct: 80 NRLVARGEVVVVED---RLGVTMTEIIKTE 106
>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
Length = 472
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ ++ DN +++M +P+++ + +G + ++++ ++G ++ LDK GE D+
Sbjct: 378 ENEGGGAGENPDNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLY 437
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + IAKG+I ++EE +FG+R+ EIL
Sbjct: 438 VNGECIAKGDIVVVEE---NFGIRITEILKK 465
>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 103
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
E + S + T + L+ +IPVKM + +GS + ++ L++L++G V+ LD++ E
Sbjct: 3 DESTAKGSKSAKSNRTKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+D+ +N + IAKGE+ + FGVR++++++ +
Sbjct: 63 LLDVVVNGKLIAKGEVVTVN---GRFGVRIVDVVSNE 96
>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 174
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+++ S P S+ + +ST N +L+M++ + + + LG M I ++ L+
Sbjct: 66 ADISAALGPSPTPSAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLN 124
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+G V+ LDK VGE +DI N + +G++ M++ +G+++ EI++
Sbjct: 125 EGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDF---YGIQITEIVD 169
>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
Length = 299
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
P S ++D + + S N DL+++I V + + +GS M +
Sbjct: 182 EEPDFGSAFTFPEDDDEPAT---GGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLK 238
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+++ + G++I LD+ E V++ INN+ IA+GE+ I++ +FG R+ EI++
Sbjct: 239 DILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVD---GYFGFRIKEIVS 289
>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
Length = 241
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 59/79 (74%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
DL+M IPV +QIILGS M +S+L+ LS+G I LD+++GE V+I +N + I +GEIT
Sbjct: 157 RVDLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEIT 216
Query: 128 IMEEDDTHFGVRVIEILNA 146
+++ DDT F VR+IE++ A
Sbjct: 217 VLDSDDTKFAVRIIEVIGA 235
>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
Length = 96
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ NF L+ ++ VK+ + +GS + + L+ LS+ VI LD++ E +D+ +N
Sbjct: 9 PVDTSVAANFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGT 68
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
I +GE+ + + FGVR+ E++N
Sbjct: 69 LIGRGEVVTVGD---RFGVRMTELVNP 92
>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 140
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIM 73
E D P ++ + E D+ P S++ I E DN +I
Sbjct: 9 EPAVQDFDQPFAGM-AATGFGDGESSSGFPDI----MPADSEAGGIEEPQIEADNSAMIA 63
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV M+++LGS M ++ L L+KG V+ LDK VG+ VDI +N IA+GE+ I+ E
Sbjct: 64 GLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNEAS 123
Query: 134 THFGVRVIEI 143
+ FGV + ++
Sbjct: 124 SRFGVVLTQV 133
>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
Length = 128
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 62/95 (65%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ E + N +IMNIPV +QIILGS M +S+L+ L KG + L++R+G
Sbjct: 28 LHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIG 87
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 88 EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122
>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
Length = 117
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+
Sbjct: 34 DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93
Query: 128 IMEEDDTHFGVRVIEILNA 146
E FG+R+I++++
Sbjct: 94 ---ESAGQFGLRLIDVVSP 109
>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
SL003B-26A1]
gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
SL003B-26A1]
Length = 112
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+N E I +++++ + +S + + + ++PV++ +LG M +S+L+
Sbjct: 2 SNEIENSIPLDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLL 61
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+
Sbjct: 62 KLAAGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110
>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
Length = 102
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ L+ N+ V M + +G+ + + +L+ L++G V+ LD+ G+ +DI +N IAKGE+
Sbjct: 20 DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
++ E FG+R +I++ +
Sbjct: 80 VVGE---KFGIRFGDIVDPR 96
>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
Length = 111
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS + +S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI +
Sbjct: 23 DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N++ +A+GE+ ++E+ GV + EI+
Sbjct: 83 NDRLVARGEVVLVED---KLGVTMTEIIKT 109
>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
MAFF303099]
Length = 128
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 63/95 (66%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ E + N ++IMNIPV +QIILGS M +++L+ L KG + L++R+G
Sbjct: 28 LHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIG 87
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 88 EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122
>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
Length = 110
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ +K+ + + +PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN
Sbjct: 21 DDHGDKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNN 80
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA+GE+ ++++ GV + EI+ +
Sbjct: 81 RLIARGEVVVVDD---RLGVTMTEIIKTE 106
>gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
Length = 107
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ N +L+++IP+ + + +G + + L+ + +G VI L K E +D+ +N++ IA
Sbjct: 19 DEDLKNLELLLDIPLDVSVEVGRTKILVRELLQMDEGYVIELGKNANEPLDVYVNSRLIA 78
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
+GE+ ++++ G+R+ ++++
Sbjct: 79 RGEVVLVDD---KLGLRLTDVISP 99
>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
DSM 19672]
Length = 289
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ +D D E + + +K+T N DL++++ V + I +GS M + ++V+LS
Sbjct: 174 SAEDDDFDFSPEVTAVNPMPKQQKTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLS 233
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
G+++ LD+ E V + +NN+ IAKGE+ I++ +FGVR+ EI++ +
Sbjct: 234 PGNIVELDEYAEEPVVVMVNNKPIAKGEVVIVD---GYFGVRIKEIISKE 280
>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 108
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ + + +IPV++ +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 29 KDLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEV 88
Query: 127 TIMEEDDTHFGVRVIEILNA 146
++E+ GV + EI+ +
Sbjct: 89 VVVED---RLGVTMTEIIKS 105
>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
Length = 124
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D S + L + + + + P+ +D + + D I+ IPV +Q+++GS
Sbjct: 5 DMGTESFESEGARLPDEAMLGSGAPPVDTDKSQL-----RRIDSILRIPVVVQVVVGSAT 59
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +S+L+ L +G VI LD RVG+ VDI +N + IA+GE+ ++EED FGV + EI Q
Sbjct: 60 LPVSSLLKLGRGAVIPLDHRVGDPVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119
>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
Length = 212
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
N + S + D + + DL+ ++ + ++I LG M
Sbjct: 95 NQAQAALASLDSPAEMASDAQLFQLRDFGGAPASTNKTTIDLVRDVELDVKIELGRTNMY 154
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ +++ ++KG V++LDK G+ VDI +N + IA+GE+ ++ + +F VR+ E++
Sbjct: 155 LEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVLND---NFCVRIAELI 206
>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
Length = 107
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
DN L+ +IP+++ + +GS ++++ L++L+ G V+ LD++ E +DI +N +AK
Sbjct: 17 AGRDNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAK 76
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ + FG+RV++I+ A
Sbjct: 77 GEVVTVN---GKFGIRVVDIVAA 96
>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
Length = 111
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ + +K+ + + ++PV + +LG + ++ L+ L++G V+ LD++VGE++DI
Sbjct: 19 PEPSPDEDKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIY 78
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+NN+ +A+GE+ I++E GV + EI+
Sbjct: 79 VNNRLVARGEVVIVDE---RLGVTMTEIIK 105
>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
Length = 95
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ ++ N ++ N+ +++ + LG M + L+ L+ GDVI LD+ VD+ +N
Sbjct: 2 PEVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGT 61
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
+AKGE+ +++++ FGVR++EI+++
Sbjct: 62 LVAKGEVVVVDDE---FGVRILEIISS 85
>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
Length = 108
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++PV + +LG M +S L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++++
Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91
Query: 132 DDTHFGVRVIEILNAQ 147
GV + EI+ ++
Sbjct: 92 ---RLGVTMTEIIKSE 104
>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
Length = 115
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 44 KNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+ +++PIS++ K + + ++PV +Q ++G M++S L++L +G V+
Sbjct: 12 EATGKVLAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVL 71
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
LD+RVGE++DI +N++ +A+GEI ++++ GV + EI+
Sbjct: 72 ELDRRVGEAIDIYVNSRLVARGEIVVVDD---RLGVTMTEIIK 111
>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
Length = 190
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ DL+M+IP+++ + +GS + + ++ L+ +++ LDK + + VD+ +N + IAKG
Sbjct: 100 EQEKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKG 159
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ +E+ HFG+++ I+ Q
Sbjct: 160 ELYTVED---HFGIKITSIITVQ 179
>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
Length = 248
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 38 SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
SE + + P SS S S N DL+++I V + GS + I L+
Sbjct: 130 SEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELLE 189
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GDV+ LD+ + + VD+ + ++ +A+GE+ ++ +FG+RV E+ +
Sbjct: 190 TGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVN---GNFGLRVTEVAEPK 238
>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
Length = 96
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
D F LI +I V++ + LG M++ +++ L + VI LD+ E +D+ +N + IA+GE
Sbjct: 5 ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ F +RV+EI+ A
Sbjct: 65 VIA---QGNRFAIRVLEIVGA 82
>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 112
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+N V+ P + + S +N ++ NI V + + +GS ++I +L+ L++G VI
Sbjct: 5 AENVVEEAKIPGAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVI 64
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
LD+ G+ +DI N IAKGE+ ++ E FG+R EI+ +
Sbjct: 65 ELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106
>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 194
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
++ + S++ EG + + + + + + + + S
Sbjct: 39 LLAQWSEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEE 98
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + D++++IP+ + + +GS M I ++ L+ VI LDK + E +D+ +N
Sbjct: 99 FSPEILNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVL 158
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
+AKGE+ +++ +F +++ EIL +
Sbjct: 159 VAKGELYQVDD---NFAIKITEILTKE 182
>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
siraeum 70/3]
Length = 400
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 10 YIKDNLEGR--SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
Y + P+Q P N Q ++ P+ S+ +
Sbjct: 288 YPNPAMNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKE 339
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++
Sbjct: 340 NLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398
>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 178
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N
Sbjct: 90 RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +G++ M++ +G+++ EI++
Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173
>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
Length = 279
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
N ++ E S+ N+ ++ N +++++ + +++ +G M + ++
Sbjct: 162 EENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVT 221
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ G VI L++ E ++I I+++ IAKGE+ I++ +FG++V EI +
Sbjct: 222 SMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVD---GNFGIQVTEIGTKR 271
>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
Length = 108
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D++ NIPV + + +G ++I +L+ L++G V+ LD+ GE +D+ +NN +A+GE+
Sbjct: 26 NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85
Query: 128 IMEEDDTHFGVRVIEIL 144
++ E +GVR+ ++
Sbjct: 86 LVNE---RYGVRLTSVI 99
>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
Length = 178
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N
Sbjct: 90 RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + +G++ M++ +G+++ EI++
Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173
>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
Length = 117
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92
+ L ++D++ + S + E+ + + + + ++PV + +LG +++SN
Sbjct: 4 QDEEVALPDLANIDSLPPAEAGPSEHEEEQVRTAQDLEAVFDVPVNVSAVLGKTHIEVSN 63
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
L+ L +G ++ LD++VGE++DI +N++ +A+GE+ ++++ GV + EI+
Sbjct: 64 LLKLGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDD---RLGVTMTEIVK 113
>gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
Length = 279
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
++G I + D + T + + Q+ + S ++ +L + N +LIM
Sbjct: 146 KIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAISS----GEAMMMLGEGLKNINLIM 201
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ + +++ +G+ M + +++ + G V+ L++ + ++I I +++IA GE+ I++
Sbjct: 202 DVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVD--- 258
Query: 134 THFGVRVIEILNAQ 147
+FGV++ EI +
Sbjct: 259 GNFGVQITEIGTKK 272
>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 125
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQII 82
+ D +++ P + D + + EP + + ++++ + + ++PV + +
Sbjct: 1 MSDDDLNLPDLSDGPQGVNPDPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAV 60
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG + +++L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++++ GV + E
Sbjct: 61 LGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD---RLGVTMTE 117
Query: 143 ILN 145
I+
Sbjct: 118 IIK 120
>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 111
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
+ + + P + E + + + I P +S + + + ++PV++ +LG
Sbjct: 3 DEQDTNIPLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+
Sbjct: 53 KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 109
>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
Length = 111
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
K+ ++ + + ++PV++ +LG M++S+L++L G V+ LD++VGE++D+ +NN+ IA+
Sbjct: 30 KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
GE+ ++E+ GV + EI+ A
Sbjct: 90 GEVVLVED---KLGVTMTEIIKA 109
>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 125
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 48 DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK
Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
GE++D+ +N + +AKGE+ ++ +G+R++++++
Sbjct: 81 LAGETLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117
>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
Length = 119
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M + + I P D LE +N+ ++++ V LGS + + ++ KG
Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKG 60
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+I L K GESV+I IN + + KGE+ + E+ + +RV E+L++
Sbjct: 61 SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEVLDS 104
>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 117
Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ N+ P + +N LE+ N+ ++++ V LG+ + ++ ++ KG +I L
Sbjct: 8 ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GESV+ +N + I KGE+ + E+ + +R+ EIL++
Sbjct: 68 KPAGESVETFVNGRIIGKGEVMVYEK---NLAIRINEILDS 105
>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
Length = 102
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +S+ N +++ NIPV + + +G ++I +L+ L +G V+ L++ GE +D+ +NN
Sbjct: 11 EPVDRESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNN 70
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+A+GE+ ++ E +GVR+ ++ ++
Sbjct: 71 TVVAQGEVVLVNE---RYGVRLTNVIPSE 96
>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
Length = 101
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + E DL++++ V++ + LGSC + + ++ LS G ++ L +R + V +
Sbjct: 10 SGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATDPVGL 69
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N++ +A GE+ ++EE +FG+++ EI+ Q
Sbjct: 70 FVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99
>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 173
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + I + + + S + + D++++IP+ + + +GS M I ++
Sbjct: 53 ESVDADIHQTLLKKSEKKESFTKEEFSPEILNKLDILLDIPITITVEIGSKSMPIEEILK 112
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+ VI LD+ + E +D+ +N +AKGE+ +++ +F +++ EIL +
Sbjct: 113 LAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD---NFAIKITEILTKE 161
>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
Length = 98
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T+ + NI V+M I +G + IS L+ L++G V+ L++ GE +DI +N KIAKGE
Sbjct: 14 TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++ E FG+R EI++ +
Sbjct: 74 VVMVGE---RFGIRFSEIVDPE 92
>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
Length = 111
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 48 DNISEPISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D P + + K T+N F L+ +IPV+M + +GS ++++ +++L++G ++ LD
Sbjct: 3 DMSEAPRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELD 62
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + +DI +N IAKGE+ + +G+R+++I +
Sbjct: 63 RQADDLLDIMVNGALIAKGEVVTVN---GRYGIRIVDIAATE 101
>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
Length = 226
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + N+ + + I LG + I ++ + +G V+ LDK G+ VDI +N + IA
Sbjct: 144 PEEAMKLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIA 203
Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ ++ + +F VRV EI++ +
Sbjct: 204 RGEVLVLND---NFCVRVAEIISPE 225
>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 115
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ ++Q D E S +S + K + +PV++ + L S M + L +
Sbjct: 3 EQNILQDEDFLLDDEFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMG 62
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+GDV+ LD+ VGE +DI +N + +GE+ + +GVR++E+
Sbjct: 63 EGDVVALDRMVGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 105
>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
Length = 133
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQI 81
++TN S NSE + + + +++ + +S + D + +++++P+ + +
Sbjct: 3 EETNPSPEEQNSEEQPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIV 62
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+GS M + ++ L+ V+ L++ + E VD+ +N + IAKGE+ + +FG+++
Sbjct: 63 EIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTV---KNNFGLKIT 119
Query: 142 EILNAQ 147
++ +
Sbjct: 120 HVVTPE 125
>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
Length = 119
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M + + I P D LE +N+ ++++ V + LGS + +S ++ KG
Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKG 60
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+I L K GESV+I IN + I KGE+ + E+ + +RV EIL++
Sbjct: 61 SIIDLQKPAGESVEIFINGRIIGKGEVMVYEK---NLAIRVNEILDS 104
>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
Length = 124
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
T +F I ++P++++ LG M + +++L G VI LDK GE VD+ +N+
Sbjct: 34 PAPAPGVTADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVND 93
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+AKGE+ ++ + FGVR+ + +
Sbjct: 94 IPLAKGEVVVINDA---FGVRINSLAAVE 119
>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
Length = 278
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
V + + ++ + N ++I+++ + +++ +G M + +++ + G VI
Sbjct: 169 AATPVAHAESGSTPVAHALSPTEFKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVI 228
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L++ + +DI ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 229 ELNQLANDPLDILVDDKVIAKGEVVIVD---GNFGIQITDIGTKR 270
>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
aurantiaca DW4/3-1]
gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
aurantiaca DW4/3-1]
Length = 441
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 19 SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
S+ I P Q SP + D + SE S D+ N E S DL+ +IP+
Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + L + +V+L G V+ L + GE V++++N + +A+GE+ +E G
Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELVEVE---GQLG 433
Query: 138 VRVIEILN 145
VRV+ +
Sbjct: 434 VRVLSLAG 441
>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
Length = 119
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
M + + I P D LE +N+ ++++ V LGS + + ++ KG
Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKG 60
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+I L K GESV+I IN + + KGE+ + E+ + +RV EIL++
Sbjct: 61 SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEILDS 104
>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
Length = 143
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ + +++ V + + +N I ++P+ + + LG +IS ++
Sbjct: 29 DEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENISTIQDVPLSVTVELGRTVKKISEVLE 88
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G +I ++K VGE VDI +N Q +AKGE+ +++E ++G R+ EI
Sbjct: 89 FGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVIDE---NYGTRITEI 133
>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
Length = 292
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
T+ ++ + + ++ + N +++++I + +++ +G M +
Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++V++ G VI L++ V + ++I ++++ IAKGE+ I++ +FG+++ +I + +
Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGSKR 283
>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
Length = 118
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
EKS + + ++PV + +LG + +++L+ L+ G V+ LD+++GE++DI +NN+ +A
Sbjct: 34 EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
+GE+ ++++ GV + EI+
Sbjct: 94 RGEVVVVDD---RLGVTMTEIIK 113
>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
Length = 112
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
F L+ +IPV+M + +GS ++++ +++L++G V+ LD++ + +DI +N IAKGE+
Sbjct: 25 RQFRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEV 84
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ +G+R++EI A+
Sbjct: 85 VTVN---GRYGIRIVEIAAAE 102
>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
Length = 141
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+++++ + + I LG M + ++ L +G VI LD+ GE +DI + +++ A+GE+ +
Sbjct: 57 IGMLLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVV 116
Query: 129 MEEDDTHFGVRVIEIL 144
+ E HFGVR+ +L
Sbjct: 117 LGE---HFGVRITRVL 129
>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 112
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 47 VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+D+ S+ + I +K D + I N+PV +Q++LG M ++ L+ L +G V+ L+
Sbjct: 9 LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++V E V++ +N++ +A+GE+ I+E+ GV + EI+ +
Sbjct: 69 RKVDEPVEVLVNHRLVARGEVVIVEDQ--RLGVTLTEIVRTE 108
>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
coli RN587/1]
Length = 102
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
++NP D N + +E L ++ S + + + DLIM+IPVK
Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTFQDIDLIMDIPVK 63
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ + LG M I L+ L++G V+ LD GE +DI IN
Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
>gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
Length = 281
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
+K + I+D E S+ +D+ T S + + ++ V S ++
Sbjct: 137 FVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEGAVS------SGEAMM 190
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I I +++
Sbjct: 191 TLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKR 250
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA GE+ I++ +FGV++ EI +
Sbjct: 251 IAYGEVVIVD---GNFGVQITEIGTKK 274
>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
Length = 261
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ ST N +L++++ + + + G + + +++L+ G V+ LD++V E V++ ++
Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
+ +A+GE I++ ++G+R+ ++L
Sbjct: 234 KVVARGEAVIID---GNYGMRITQVL 256
>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
Length = 137
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ + ++ L IPV + + + S
Sbjct: 19 DESAISPTEHFDSMINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
Length = 541
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
SS + + E+ DLI +IPV++ +LG + + L+ G V+ L VDI
Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
N + +A+GE+ E FG+++ EI+
Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535
>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
1740]
gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 289
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
N+ E N +++++ +++++ +G M + +++++ G V+ L++ + ++I ++++
Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IAKGE+ I++ +FG+++ EI +
Sbjct: 257 VIAKGEVVIVD---GNFGIQITEIGTKR 281
>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
16994]
gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
16994]
Length = 288
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
N + + N + P SS + + E N LIM + + +++ +G M
Sbjct: 165 NEALTGEKAAPAPASNSSNIFDAPSSSVPAVKLDEGEMKNIGLIMGVKLPVRVRIGKKKM 224
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +++++ G VI L++ + +DI +++ IA+GE+ I++ +FGV++ I +
Sbjct: 225 LLKDVLSMDIGSVIELNQLANDPLDILVDDHVIAQGEVVIVD---GNFGVQITSIGTKR 280
>gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
Length = 283
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ K+ S + ++ +K N ++++I + +++ +G M + +++++ G V
Sbjct: 173 VPKDLKAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSV 232
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ L++ + ++I +N++ I KGE+ +++ +F +++ EI +
Sbjct: 233 VELNQLASDPLEILVNDKIIGKGEVVVVD---GNFAIQITEIGTKK 275
>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
Length = 112
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
F L+ +IPV+M + +GS ++++ +++LS+G V+ LD++ + +DI +N IAKGE+
Sbjct: 25 RQFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEV 84
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ +G+R++EI A+
Sbjct: 85 VTVN---GRYGIRIVEIAAAE 102
>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
Length = 126
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGS 85
D + NSE + + + P + + E D + +PVKMQ +LG
Sbjct: 7 DIAAAPIEQNSEAFVDLPSLGETAAPEPLEDLAVYEGDGGALGLDAVHEVPVKMQAVLGR 66
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+ ++++ GV + EI++
Sbjct: 67 ARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLIDKA---LGVTLTEIVH 123
Query: 146 A 146
Sbjct: 124 E 124
>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
[Campylobacter curvus 525.92]
Length = 286
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+++ ++ + ++ + + N +LIM++ + +++ +GS M + ++++
Sbjct: 171 EPTKVGESESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G VI L++ + ++I I ++ IA GE+ I++ +FG+++ +I + +
Sbjct: 231 MDIGSVIELNQLANDPLEILIGDKVIALGEVVIID---GNFGIQITQIGSKR 279
>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
Length = 82
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ T + L+M++ VK+ + LGSC M + ++ L G VI L++ + V + IN++ IA
Sbjct: 3 EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62
Query: 124 GEITIMEEDDTHFGVRVIEILN 145
GE+ ++E+ +FG+++ E+ N
Sbjct: 63 GEVVVVED---NFGIKITEMAN 81
>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
Length = 279
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 42 IQKNDVDNISEPISSDSNNILE----KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ K D++ I P + + + N LIM++ + +++ +GS M + +++ +
Sbjct: 166 LTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRIGSKKMLLKDVLTMD 225
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
G VI LD+ + ++I I ++KIA GE+ I++ +FGV++ EI + +
Sbjct: 226 IGSVIELDQLANDPLEILIGDKKIAYGEVVIVD---GNFGVQITEIGSKK 272
>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
Length = 149
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
P + E + + ++ +E + + + + + I++IP+ + +++
Sbjct: 22 EPTPQNDEDLMKLWEEAIQAQAQTESSAE--NQQAQATTQDISKDLQRILDIPLSITVVI 79
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G+ + I L+NL G V+ LD+ + V + N + IAK E+ ++ E +FG+R+ EI
Sbjct: 80 GTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGE---NFGIRIAEI 136
Query: 144 LNAQ 147
+ +
Sbjct: 137 IEKE 140
>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
Length = 77
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 62/75 (82%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
M+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ D
Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60
Query: 133 DTHFGVRVIEILNAQ 147
DT FGV++IE+L+ +
Sbjct: 61 DTRFGVKLIEVLSTK 75
>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 137
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ + ++ L IPV + + + S
Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
Length = 114
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S P +++ + D I + + ++++LG M IS L+NL+KG VI LD+RVGE
Sbjct: 16 STPQDAETKAPAGLDGKSLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGE 75
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
VDI IN++ +A+G++ ++ D GV + EI+
Sbjct: 76 PVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108
>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
Length = 123
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 118
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
D S + K + +PV++ + L S M + L + +GDV+ LD+
Sbjct: 16 DEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRM 75
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
VGE +DI +N + +GE+ + +GVR++E+
Sbjct: 76 VGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108
>gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
260.94]
Length = 280
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + IL + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 AEEKAIILSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
JL354]
Length = 118
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
D + LI I V++ + LG + + ++ L + ++ LD+ E +DI +N + IA+GE+
Sbjct: 6 DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65
Query: 127 TIMEEDDTHFGVRVIEILNA 146
F +R++E+ A
Sbjct: 66 VA---QGNRFAIRILELSGA 82
>gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 81116]
gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 327]
Length = 280
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228]
gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20]
gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228]
gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20]
Length = 278
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+D S S + + + N +LIM++ + +++ +G+ M + +++ + G V+
Sbjct: 170 AADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVV 229
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L++ + ++I I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 230 ELNQLANDPLEILIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 271
>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 172
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ +++ I LG M I +++ LS+G V+ LDK +GE +DI N + + +G++ ++++
Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDD-- 150
Query: 134 THFGVRVIEILNA 146
++GV++ +I++
Sbjct: 151 -YYGVQITQIVDP 162
>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
Length = 137
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
D + SPT + + +I ++ N E ++ + ++ L IPV + + + S
Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I
Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127
>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 116
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+ S+++ I NIPV + + + S +++ +L+N++ G VI LDK GE +D+
Sbjct: 20 PSSDAPAPVSSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVR 79
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+N + E+ ++ +G+R++ +++ +
Sbjct: 80 VNGTLLGHAEVVVVN---NKYGLRLVNVVDEK 108
>gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 280
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 305]
Length = 280
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
Length = 288
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + +N LIM++ + +++ +G M + +++N+ G VI L++ + +DI ++N
Sbjct: 197 LSGEEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHV 256
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
IA+GE+ I++ +FGV++ I + +
Sbjct: 257 IAQGEVVIVD---GNFGVQITSIGSKR 280
>gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8421]
gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8421]
gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni S3]
Length = 280
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 280
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 280
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
84-25]
Length = 280
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 273
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 177 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266
>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 193
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
N E + + LQ+ + E + ++ + + ++ E + +L+M
Sbjct: 52 NQEEIAKQWEEALQEQKSKEEGIDQEEIAKQWEEALQEQKTQGETPVFEEVKDEKLELLM 111
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+++ + +G + + +++ L+ V+ LDK + E VDI IN + +AKGE+ E
Sbjct: 112 DIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGELYTAE--- 168
Query: 134 THFGVRVIEILNAQ 147
+FGV++ I+ Q
Sbjct: 169 NNFGVKITSIVTVQ 182
>gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221]
gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 81-176]
gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 273
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 177 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266
>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
98-5491]
gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
Length = 285
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
S +N ++ + + + IQ + + + + + N +++++ ++
Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNA------ALELNNAEMKNMAMLLDVRLQ 212
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+ I++ +FG+
Sbjct: 213 VKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGI 269
Query: 139 RVIEILNAQ 147
++ EI +
Sbjct: 270 QITEIAPKK 278
>gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 414]
gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 414]
Length = 280
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 184 AEEKAIMLGEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273
>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
Length = 109
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ LG+ + + +L+ L +G VI L+K GE +D+ +N++ IA+ E ++ E
Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89
Query: 135 HFGVRVIEILNA 146
G+R+ ++++
Sbjct: 90 KIGLRLTDVVSP 101
>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
Length = 93
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
FDLIM++ V++ + LG M++ +++ L++ V+ LD+ E +D+ +N + IA+GE
Sbjct: 5 PRGFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGE 64
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ + FG+R++E++
Sbjct: 65 VVAQGD---RFGLRIVELVG 81
>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
Length = 120
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 56/80 (70%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ + ++ IP+ ++++LGS M I + L +G VI LD++VG++VD+ IN + IAKGE
Sbjct: 37 PGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGE 96
Query: 126 ITIMEEDDTHFGVRVIEILN 145
I +++E+ + FGV + E+++
Sbjct: 97 IVVLDEEGSRFGVTLTEMID 116
>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
Length = 279
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
Q + + + + N +++++ +++++ +G M + +++ + G V+
Sbjct: 171 QALEESSTGNGEAQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVV 230
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L++ + +++ ++++ IAKGE+ I++ +FG+++ EI +
Sbjct: 231 ELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 272
>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
SouthAfrica7]
Length = 282
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ E + ++ +E + ++ N +++++ + +++ +G M + ++V
Sbjct: 165 ESQFETKKEPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVV 224
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 225 SMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 274
>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 134
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
N + IM++PV + I +G+ + I +L+ L ++ LDK G+ ++I +N
Sbjct: 45 NSKNDISSKMKFIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGY 104
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145
IA GE+ + E +G+R+I I++
Sbjct: 105 VIATGELVVTE---NKYGIRIINIID 127
>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
Length = 293
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ + N +++++I + +++ +G M + ++V++ G V+ L++ V + ++I ++++
Sbjct: 200 PLEQTEIRNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDK 259
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
IAKGE+ I++ +FG+++ EI +
Sbjct: 260 VIAKGEVVIVD---GNFGIQITEIGTKK 284
>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
Length = 128
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I S + + N + +PV++ + L S M + L + +GDVI LD+ VG
Sbjct: 27 IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 86
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E +DI +N + +GE+ E +GVR++EI
Sbjct: 87 EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 117
>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
SL003B-26A1]
Length = 136
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 69/119 (57%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
T T N+ +++ + L N D I+ IPV +Q++LGS M
Sbjct: 12 TPAGKQTINAAGPANFAKIESGGRKAARMGTEDLIGDERNLDTILGIPVNIQVVLGSATM 71
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++NL+ L +G VI L+ RVGE VDI +N + +A+GE+ ++E+D++ FGV + EI++AQ
Sbjct: 72 LVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVVEDDNSRFGVSLTEIISAQ 130
>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
Length = 117
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ + P + LE+ +++ ++++ + LGS + + ++ +G
Sbjct: 3 PVNPRLKKQPTLNPRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERG 62
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI L K GESVD +N + I KGE+ + E+ + +R+ E+L++
Sbjct: 63 SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 106
>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 123
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
+ +P+ D + S N++ + + + +SEP++ + L + + IPV + +
Sbjct: 1 MSSPISDNDFDSLINDAGLNLDEP----VSEPVAEQAPASLPQ--QDLSFFGKIPVNVTL 54
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ S + + L+++ G VI LDK GE +D+ +N AK E+ +M ++G+R++
Sbjct: 55 EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111
Query: 142 E 142
E
Sbjct: 112 E 112
>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 120
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ D+ + + NIPV + + + S + + +L+ +G VI LD
Sbjct: 16 NFDDFQLEENLSEPAYTPLPERDLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELD 75
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GE +D+ +N + E+ ++ + +G+R+I++++
Sbjct: 76 KMNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVDE 113
>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
51449]
gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
Length = 278
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ N ++I+++ + +++ +G M + +++ + G VI L++ + ++I +++
Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IAKGE+ I++ +FG+++ +I +
Sbjct: 245 KVIAKGEVVIVD---GNFGIQITDIGTKR 270
>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
Length = 277
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
D ++ ++ ++++ + N LIM++ + + + +GS M + +++ + G VI L
Sbjct: 171 KDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + ++I I+++ +A GE+ I++ +FG+++ +I +
Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270
>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
Length = 287
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E I + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEETTKSAAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 269
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
++I + IS S+ + ++ D++M++ +++++ +G M + +++++ G ++ LD+
Sbjct: 164 NDIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQL 223
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E +DI I ++KI +GE+ I++ +FG+++ I
Sbjct: 224 ANEPLDILIEDKKIGEGEVVIVD---GNFGIQITSI 256
>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
49179]
Length = 139
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ K P + LE+ +++ ++++ V LGS + + ++ +G
Sbjct: 25 PVNPKIKKQPTLNPREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERG 84
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI L K GESVD +N + I KGE+ + E+ + +R+ E+L++
Sbjct: 85 SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128
>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
Length = 71
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ LG M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++++ FG+R+
Sbjct: 1 MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDD---KFGIRL 57
Query: 141 IEILNA 146
I++
Sbjct: 58 TNIISP 63
>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
Length = 123
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
+ +P+ D + S N++ + + ++ D+ E + + IPV + +
Sbjct: 1 MSSPISDNDFDSLINDAGLNLDESGSDSAPEQAPTALPQ------QDLSFFGKIPVNVTL 54
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ S + + L+++ G VI LDK GE +D+ +N AK E+ +M ++G+R++
Sbjct: 55 EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111
Query: 142 E 142
E
Sbjct: 112 E 112
>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
51449]
Length = 117
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D I + LE N+ ++++ LGS + + ++ KG +I L
Sbjct: 8 DKQRIHSAKEIELATYLEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLG 67
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GESV+I IN + I KGE+ + E + +R+ EIL++
Sbjct: 68 KPAGESVEIFINGRVIGKGEVMVYE---RNLAIRINEILDS 105
>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
Length = 114
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
N + Q + DN ++ + + L+ + D I + + ++++LG M IS L+NL
Sbjct: 4 NDQDKTQADLTDNNAQDAETKAPAGLDG--KSLDAIFGVKLDVRVVLGRSRMPISELLNL 61
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+KG VI LD+RVGE VDI IN++ +A+G++ ++ D GV + EI+
Sbjct: 62 TKGSVIELDRRVGEPVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108
>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
Length = 287
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E I + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 122
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + NIPV + + + S + + +L+ +G VI LDK GE +D+ +N
Sbjct: 31 DAAVPTPERDLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNG 90
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ E+ ++ E +G+R+I+I+++
Sbjct: 91 SLMGHAEVVVVNE---KYGLRLIDIVDS 115
>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 118
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
S + K + +PV + + L S M + L + +GDV+ LD+ VGE
Sbjct: 20 AEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEP 79
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+DI +N + +GE+ + +GVR++E+
Sbjct: 80 LDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108
>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
[uncultured bacterium]
Length = 117
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+S + + +PV++ +LG+ +Q+S ++ L +G V+ LD+ VGE VDI NN
Sbjct: 30 PKKAARSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANN 89
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ IA+GE+ ++E+ +++ +I+ +
Sbjct: 90 RLIARGEVVVVED---RLAIQITDIIRS 114
>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 105
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+++S+ T + I+++PV++ + LG M+IS L+ L DV+ L++ VGE VD
Sbjct: 2 AATNSDAAESGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVD 61
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ +N++ +A+GE+ +++ G+ ++E++
Sbjct: 62 LFVNDRLVARGELVVVD---GRLGLTIVELM 89
>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
Length = 124
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
I S + + N + +PV++ + L S M + L + +GDVI LD+ VG
Sbjct: 23 IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 82
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E +DI +N + +GE+ E +GVR++EI
Sbjct: 83 EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 113
>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
Length = 287
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E I + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
Length = 120
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
NPL + + + NDV++IS+ S S K + + +IPV + + +
Sbjct: 2 NPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSA----KKAKSLSFLNDIPVHVTVEV 57
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G+ + + L+ + V+ L K G+++DI +N + A GE+ + H+GV++ +I
Sbjct: 58 GAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVAN---GHYGVKITDI 114
Query: 144 LNA 146
+N
Sbjct: 115 VNK 117
>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
Length = 287
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E I + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
Length = 287
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
Length = 287
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
Length = 287
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
Length = 112
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ LE +++ +++I LGS + I ++N +G VI L K GESVD
Sbjct: 12 REQELTTYLEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVD 71
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ IN + + +GE+ + E+ + +R+ EIL++
Sbjct: 72 VFINTRIVGRGEVMVYEK---NLAIRLNEILDS 101
>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
Length = 287
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
Length = 287
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+
Sbjct: 183 QSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
Length = 122
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N + + NIPV + + + S + + +L+ +G VI LDK GE +D+ +N
Sbjct: 31 ENSVAMPERDLSFFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNG 90
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ E+ ++ E +G+R+I+++++
Sbjct: 91 SLMGHAEVVVVNE---KYGLRLIDVVDS 115
>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
Length = 284
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ N LIM++ + M++ +GS M + +++ + G VI L++ + ++I I
Sbjct: 191 KGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIG 250
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ IA GE+ I++ +FG+++ +I + +
Sbjct: 251 DKVIALGEVVIID---GNFGIQITQIGSKR 277
>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
Length = 287
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSTTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
Length = 277
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
D ++ + ++ + N LIM++ + + + +GS M + +++ + G VI L
Sbjct: 171 KDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + ++I I+++ +A GE+ I++ +FG+++ +I +
Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270
>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
Length = 287
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ ++ + +E + + ++ N +++++ + +++ +G M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
Length = 287
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+
Sbjct: 183 KSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
Length = 284
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N +E N + + N +++++ +++++ +G M + +++
Sbjct: 169 NTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIA 228
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ L++ +S+++ ++++ IAKGE+ I++ +FG+++ EI +
Sbjct: 229 MDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 277
>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
furnissii NCTC 11218]
Length = 122
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++++ D+ +E+ + NIPV + + + S + + L+ +G VI LD
Sbjct: 21 HLEDLEPETEGDTAPNVER---DLSFFRNIPVTVTLEVASKAIALGELMKAGEGSVIELD 77
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GE +D+ +N + E+ ++ + +G+R+I++L++
Sbjct: 78 KLNGEPLDVKVNGALLGHAEVVVVND---KYGLRLIDVLDS 115
>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
Length = 128
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D + P + + LE N++ ++++ V LG+ + ++ ++ KG +I L
Sbjct: 15 DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K G SV+I +N++ + KGE+ + E + +R+ EIL++
Sbjct: 75 KPAGASVEIFVNDRVVGKGEVMVYE---RNLAIRINEILDS 112
>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 122
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IP+++ I +GS + + ++ L ++ LD+ + E VDI IN + +AKG++ + E
Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRE-- 101
Query: 134 THFGVRVIEILNAQ 147
++G+++ +I+ +
Sbjct: 102 -NYGIKITQIITPE 114
>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
Length = 118
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S+ S K N + +PV++ + L S M + L + +GDVI LD+ VGE +DI
Sbjct: 22 SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+N + +GE+ E +GVR++EI
Sbjct: 82 RVNGALLGRGEVV---EVAGRYGVRLLEI 107
>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
Length = 118
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S+ S K N + +PV++ + L S M + L + +GDVI LD+ VGE +DI
Sbjct: 22 SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+N + +GE+ E +GVR++EI
Sbjct: 82 RVNGALLGRGEVV---EVAGRYGVRLLEI 107
>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
Length = 290
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 187 STAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282
>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 121
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E IPV + + + S + + L+ +G VI LDK GE
Sbjct: 23 EQFDESPQLDTPNPQRGLSFFKKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEP 82
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N + E+ ++ E +G+R+I+++++
Sbjct: 83 LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVDS 114
>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
Length = 287
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+
Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
Length = 287
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 184 GVAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_AG0C1]
Length = 290
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 187 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282
>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
Lithuania75]
Length = 287
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+
Sbjct: 183 QGAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
Length = 287
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+
Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
Length = 288
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 185 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 244
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 245 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 280
>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 103
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++D + K F+ +++I V LG+ + I L+ L KG VI L+K GESV++
Sbjct: 3 AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
INN+ KGE+ + E+ + +R+ EIL+++
Sbjct: 63 YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92
>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
Length = 84
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
D+++++ VK+ + LGS + + ++ LS G V+ L + + V + +N+Q +A G
Sbjct: 2 EEKALDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYG 61
Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
E+ ++E+ +FG+++ E++ ++
Sbjct: 62 EVVVVED---NFGIKITELVGSE 81
>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
Length = 132
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPVKMQ 80
D P DT ++P + L+ + + + + + + + ++N+ +++
Sbjct: 6 TDKPSPDT--AAPGQPDDTLLPELEAPEEQTVLENMVGEQVNGDGGRSIEAMLNVGLEVN 63
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
I+LG M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++ + ++ GV +
Sbjct: 64 IVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDN--RVGVTL 121
Query: 141 IEILN 145
EI+
Sbjct: 122 TEIVK 126
>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
Length = 290
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+E + + ++ N +++++ + +++ +G M + ++V++ G V+ L
Sbjct: 183 KSTTEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 242
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
D+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 243 DQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282
>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 293
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNI----LEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
T N+ + P SN I ++S+ N L+ +I +K+ + LG+ +
Sbjct: 171 TGKEADAASNNESSSQGFPSLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLL 230
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+++ G++I L++ V E +DI +N KI +GE I+E FG+++ I
Sbjct: 231 KDILKWDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVE---GKFGLKIKNI 280
>gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni
M1]
Length = 123
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I
Sbjct: 27 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 86
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +++IA GE+ I++ +FGV++ EI + +
Sbjct: 87 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 116
>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
Length = 290
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 187 SAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282
>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
Length = 154
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
++ D P D ++ + + +D +E + E + ++N+
Sbjct: 25 PKTTEQDQPRADAFGNTASLGGDDAGVFPQLD--TEDSRNALAPRPEAGGAGINAMLNVG 82
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ +QI+LG M IS L+ L++G ++ L++++G VD+ ++++ +A+G++ + ED
Sbjct: 83 LDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKVGED--RL 140
Query: 137 GVRVIEILN 145
GV + +I+
Sbjct: 141 GVSLTQIVK 149
>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 118
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + ++PV++ + L S + + L+ L +GD++ LD+ VGE +D+ +N + +GE+
Sbjct: 36 DMNFFSHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV 95
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ +GVR++E+ ++
Sbjct: 96 EVN---GRYGVRLLEVEASK 112
>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
Length = 290
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 187 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282
>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
Length = 128
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
N D ++N+ + +QI+LG M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++
Sbjct: 47 NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106
Query: 128 IMEEDDTHFGVRVIEILN 145
++E+ GV +IEI+
Sbjct: 107 KLDEE--RVGVSLIEIVK 122
>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 118
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N +
Sbjct: 30 SPKPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALL 89
Query: 122 AKGEITIMEEDDTHFGVRVIEI 143
+GE+ + +GVR++E+
Sbjct: 90 GRGEVVEVN---GRYGVRLLEV 108
>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
Length = 287
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ ++ + E I + ++ N +++++ + +++ +G M + ++V++
Sbjct: 173 THQEEKEEATKSTIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMD 232
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 233 IGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279
>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 133
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92
++ + + DVD P + N+ L+ + D D I+N+PV + + LG+ ++I +
Sbjct: 15 DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKD 74
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ SKG ++ L++ + E ++I +N IA GEI ++EE +G+R+ I N+
Sbjct: 75 FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125
>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 122
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+S + NIPV + + + S + + +L++ +G +I LDK GE +D+ +N +
Sbjct: 36 QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
E+ ++ E +G+R+I+++++
Sbjct: 96 AEVVVVNE---KYGLRLIDVVDS 115
>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
Gambia94/24]
Length = 285
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277
>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
1251]
gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
Length = 283
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + ++ N LIM++ + +++ +G M + +++N+ G VI L++ + +DI
Sbjct: 187 SATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDIL 246
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+++ IA+GE+ I++ +FGV++ I +
Sbjct: 247 VDDNVIAEGEVVIVD---GNFGVQITSIGTKR 275
>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277
>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
(strain APS)
gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 133
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92
++ + + DVD P + N+ L+ + D D I+N+PV + + LG+ ++I +
Sbjct: 15 DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKD 74
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ SKG ++ L++ + E ++I +N IA GEI ++EE +G+R+ I N+
Sbjct: 75 FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125
>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 122
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + +
Sbjct: 37 AERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQA 96
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++ + +G+R+IE+ ++
Sbjct: 97 EVVVIND---KYGLRLIEVHDS 115
>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 285
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277
>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 121
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
E S + IPV + + + S + + L+ +G VI LDK GE
Sbjct: 23 EQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEP 82
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D+ +N + E+ ++ E +G+R+I+++ +
Sbjct: 83 LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVES 114
>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 121
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
S + IPV + + + S + + L+ +G VI LDK GE +D+ +N +
Sbjct: 36 SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+ ++ E +G+R+I+++ +
Sbjct: 96 EVVVINE---KYGLRLIDVVES 114
>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
Length = 122
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+++ + + E+ + +IPV + + + S + + +L+ +G VI LD
Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GE +D+ +N + + E+ ++ + +G+R+I++ ++
Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLIDVHDS 115
>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
fetus 82-40]
gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
Length = 276
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ + N LIM++ + +++ +GS M + +++++ G VI L++ + +++ I ++++
Sbjct: 187 ITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQV 246
Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
A GE+ I++ +FGV++ EI +
Sbjct: 247 ALGEVVIVD---GNFGVQITEIGTKK 269
>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 192
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N+ +L++++P+ + + +GS M I +V LS V+ LD+ + E +D+ +N
Sbjct: 94 QNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNG 153
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+AKGE+ +E+ F +++ EIL +
Sbjct: 154 VLVAKGELYQVED---QFAIKIKEILTKE 179
>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
Length = 123
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
S T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + +
Sbjct: 2 SETESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
Length = 123
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
S T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + +
Sbjct: 2 SETESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
Length = 123
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 35 TNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
N E LI + D+ + + + + + IPV + + + S + + L
Sbjct: 7 DNEFENLINEGDLSLDAVDEPAVPAPAAAPAPRQDLSFFGKIPVNVTLEVASAEISLKEL 66
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ VI LDK GE +D+ +N AK E+ +M ++G+R++E+
Sbjct: 67 MECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMN---GNYGLRIVEL 113
>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
Length = 287
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 202 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 261
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
I++ +FG+++ +I +
Sbjct: 262 VIVD---GNFGIQITDIGTKK 279
>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 101
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD +D +++I V+ LG+ + + L+ L G VI L+K GESV++
Sbjct: 2 SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
INN+ KGE+ + E+ + +R+ EIL+++
Sbjct: 62 INNRIFGKGEVVVYEK---NLAIRINEILDSK 90
>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 93
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
IM+IPV +Q++LG+ + ++ L NLS+G VI DK+VGE +D+ N + IA+GEI I ++
Sbjct: 19 IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQITDD 78
Query: 132 DDTHFGVRVIEILNA 146
+ + EI+++
Sbjct: 79 --GRLSISITEIVSS 91
>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
Length = 105
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+
Sbjct: 17 KSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 77 MVYEK---NLAIRINEILDSK 94
>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
harveyi ATCC BAA-1116]
gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
Length = 122
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+++ + + E+ + +IPV + + + S + + +L+ +G VI LD
Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GE +D+ +N + + E+ ++ + +G+R+I + ++
Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115
>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
Length = 105
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+
Sbjct: 17 KSYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 77 MVYEK---NLAIRINEILDSK 94
>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 123
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
+ + +D S + + +IPV + + + S +
Sbjct: 2 SEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +L+ +G VI L+K GE +D+ +N + E+ ++ + +G+R+I++ ++
Sbjct: 62 PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116
>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
Length = 116
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D I + LE N+ ++++ V LG+ + + ++ KG +I L
Sbjct: 8 DKQRIHSAKEIELATYLEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLG 67
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GES++ IN + I KGE+ + E + +R+ EIL++
Sbjct: 68 KPAGESIETFINGRVIGKGEVMVYE---RNLAIRINEILDS 105
>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
Length = 123
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
S T +++ I + + + ++ + + LE+ ++ ++++ + LGS + +
Sbjct: 2 SETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 94
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
D+ N DN + + ++ V++ +LG+ + I+ L+ L +G V+ LD++V + VD
Sbjct: 2 ADDDAINAALGIGDNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVD 61
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +N +++ + E+ ++E+ H V + E+L
Sbjct: 62 LYVNRKRVCRAEVVVVED---HLAVTITEVLK 90
>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
Length = 122
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + NIP+ + + + S + I +L+ LS G VI LDK E +D+ +N Q +A
Sbjct: 35 KPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLA 94
Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
E+ ++ +GV++I++++
Sbjct: 95 TAEVVVVN---GKYGVKLIDVVD 114
>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
Length = 123
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
S T +++ + + + + ++ + + LE+ ++ ++++ + LGS + +
Sbjct: 2 SETEANKLKVAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
Length = 126
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ D+ + P + + ++ + + ++ +++ + LG M++ ++ L
Sbjct: 12 ARASSSDADIKKVQFPPLTPVKGM-DRVKTSMSHLEDVQIEISVELGQTVMKVREVLGLE 70
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+G VI LDK +GE+V++ +N Q+ A+GE+ ++ + FGVR+ I
Sbjct: 71 QGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDS---FGVRITSI 113
>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
Length = 286
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ + N +LI ++ + +++ +GS M + +++++ G VI LD+ + ++I + +
Sbjct: 194 PSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGD 253
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ IA GE+ I++ +FGV++ EI +
Sbjct: 254 KVIAMGEVVIVD---GNFGVQIGEIGTKR 279
>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
fetus 82-40]
Length = 101
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD +D +++I V+ LG+ + + L+ L G VI L+K GESV++
Sbjct: 2 SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
INN+ KGE+ + E+ + +R+ EIL+++
Sbjct: 62 INNRIFGKGEVMVYEK---NLAIRINEILDSK 90
>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
Length = 122
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+++ + + E+ + +IPV + + + S + + +L+ +G VI LD
Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
K GE +D+ +N + + E+ ++ + +G+R+I + ++
Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115
>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
Sheeba]
gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 283
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 198 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 257
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
I++ +FG+++ +I +
Sbjct: 258 VIVD---GNFGIQITDIGTKK 275
>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TEPNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 315
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
P+ D I + +++I + + + +GS + ++++ +G V+ LDK+ G
Sbjct: 226 TPLQYDREQIGDDKKK----LLDITLDVSVRIGSTVCSVKDVLSFKEGQVLVLDKQAGSP 281
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
D+ N + I +G++ + + HFG R+IEI+ +
Sbjct: 282 ADVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314
>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 123
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ +D + + + +IPV + + + S + + +L+ +G V
Sbjct: 15 LNFDDFQLEDFEAETTRQPEPVAAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTV 74
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I L+K GE +D+ +N + E+ ++ + +G+R+I++ ++
Sbjct: 75 IELEKLNGEPLDVKVNGSLLGHAEVVVVND---KYGLRLIDVHDS 116
>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
Length = 123
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + LE+ ++ ++++ + LGS + + ++ KG VI L K GESVD +
Sbjct: 26 ELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFV 85
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + I KGE+ + E + +R+ EIL++
Sbjct: 86 NGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 123
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
T +++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++
Sbjct: 4 TEANQLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIIFSAELGSTQIPLLQIL 63
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++
Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112
>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
STEC_7v]
Length = 123
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+DV +++P +D+ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 16 DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 123
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88
S + ++ + D+ + + ++ + +IPV + + + S +
Sbjct: 2 SEALETNAFDAEELNFDDFQLEDFEAEDTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +L+ +G VI L+K GE +D+ +N + E+ ++ + +G+R+I++ ++
Sbjct: 62 PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116
>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
Length = 289
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+ + E +Q +S S +N+ + ++ N +L+ N+ +K+ + LG+ +
Sbjct: 167 SAITGIYQEEPKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVL 226
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ +++ G++I L++ V E ++I IN KI +GE I+E FG+++ I+N
Sbjct: 227 LKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVE---GKFGLKIKRIINE 280
>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
Length = 270
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
L+ N +++++I +++++ +GS M + +++ + G ++ L++ E +DI I ++KI
Sbjct: 180 LKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPLDILIEDKKI 239
Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
+GE+ I++ +FG+++ I + +
Sbjct: 240 GEGEVVIVD---GNFGIQITSIGSRE 262
>gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
Length = 294
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------KSTDNFDLIMNIPVKMQII 82
NV P++ S + + + + S S+N E + N LIM++ + +++
Sbjct: 165 KNVLFPSDTSSESAEIEENRSTAAASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVR 224
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+G M + +++N+ G VI L++ + ++I ++N +A+GE+ I++ +FG++V
Sbjct: 225 IGKKRMLLKDVLNMDIGSVIELNQLANDPLEILVDNHVVAQGEVVIVD---GNFGIQVTT 281
Query: 143 ILNAQ 147
I +
Sbjct: 282 IGTKK 286
>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 102
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E+ + +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92
>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
Length = 117
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
S+ + + I NIPV + + + S + + +L+N+ G VI LDK GE++D+ +N
Sbjct: 24 QAPEATSSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNG 83
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
+ E+ I+ +G+R++ +++
Sbjct: 84 TLLGHAEVVIVN---NKYGLRLVSVVD 107
>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
Length = 118
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
M + +++ + + + E+ ++D +M+I V LG+ + + L+ L
Sbjct: 1 MSEELQEINAVETALQGVQEMLQERGGLFKSYDELMDIGVDFISELGTTTISVKQLLKLE 60
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
G VI L+K GESV++ INN+ KGE+ + E+ + +R+ EIL+++
Sbjct: 61 VGSVIDLEKPAGESVELFINNRIFGKGEVMVYEK---NLAIRINEILDSK 107
>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
Length = 127
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
V + P + + + + ++ V + LG M + ++L +G V
Sbjct: 17 PGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREFLSLHEGSV 76
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I LD+ GE++D+ +N K+A+GE+ ++ + F +R+ I + Q
Sbjct: 77 IGLDRAAGETIDVVVNGVKLARGEVLVINDL---FVLRIHSIAHPQ 119
>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
QCD-63q42]
gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
43255]
gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
Length = 124
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ ++ + V++ + + ++ E + +N I+++ +++ +++G M + +++
Sbjct: 8 SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
NL KG +I LD + V+I I+N+ +A G++ +++ +FGV++ I++ +
Sbjct: 68 NLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117
>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
Length = 118
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+
Sbjct: 30 KSYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEV 89
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 90 MVYEK---NLAIRINEILDSK 107
>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
Length = 132
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 41 LIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ Q++ V+ NI + ++ N L IPV + + + S + ++ L++++
Sbjct: 22 MTQEDTVEGNIRLDLQPETRNTAMTDIRKMALFSRIPVTLTLEVASVNISLAELMSVNSD 81
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+ LDK GE +DI +N K E+ ++ + +G+R+IE
Sbjct: 82 SVVELDKMAGEPLDIKVNGILFGKAEVVVLND---KYGLRIIE 121
>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
Length = 467
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
++ + ++P + ++ +D++S+P S DL+ ++P+++ + L
Sbjct: 365 EEEDFTNPELDVPPELEGAALDDVSKPDGS-------------DLLGDVPLQIAVELARV 411
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ +V L G V+ L++ GE V++++N + +A+GE+ E + GVR+I + +
Sbjct: 412 PVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELV---ELEGQLGVRIITLAS 467
>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
269.97]
gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
81-176]
gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
269.97]
gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni S3]
gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni 305]
gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
327]
Length = 102
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E+ + +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92
>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
Length = 102
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + KGE+
Sbjct: 15 QSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 74
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 75 MVYEK---NLAIRINEILDSK 92
>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis EO147]
gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis C6786]
Length = 115
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + D E S ++ I D L+ IPV++ + +GS + ++ L+
Sbjct: 2 EPTDQPDLDVLLDDLAPEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELM 61
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +G V+ LD+ GE + I IN + E+ + + ++G++++++
Sbjct: 62 AIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVVSGD---NYGLKLLDL 107
>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
M1]
Length = 105
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 11 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E+ + +R+ EIL+++
Sbjct: 71 IFGKGEVMVYEK---NLAIRINEILDSK 95
>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 122
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ K + +PVK+ + L S + + +L + +GDVI LD+ VGE++DI +
Sbjct: 29 SEPPAIRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRV 88
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
N + KGE+ E +GVR++E+
Sbjct: 89 NGALLGKGEVV---EVGGRYGVRLLEV 112
>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 119
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+ IPV + + +GS + +++LVN+ +G V+ LDK GE +DI +N I + E+ +
Sbjct: 40 FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99
Query: 131 EDDTHFGVRVIEI 143
+ ++G+RV+E+
Sbjct: 100 D---NYGLRVVEL 109
>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
ATCC 12472]
Length = 116
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
+ IPVK+ + +GS + +++L +S G V+ LDK GE +DI +N I + E+ +
Sbjct: 38 FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97
Query: 131 EDDTHFGVRVIEILNAQ 147
+ ++G+RV+E+ + Q
Sbjct: 98 D---NYGLRVVELNDLQ 111
>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
Length = 98
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+++ I++I V LG+ M + L+ L G VI L+K GESV++ +N + KGE+
Sbjct: 10 QSYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEV 69
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 70 MVYEK---NLAIRINEILDSK 87
>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
Length = 100
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
T DL+M+I + + G+ MQ+ ++ LS GDVI LD+ V + VD+ I ++ +A+GE
Sbjct: 12 TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71
Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
+ ++ +F + V E+ Q
Sbjct: 72 VVVLN---GYFALNVTEVAAPQ 90
>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
Length = 104
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
EM + K ++ +++ + S N + N D++ ++ +KMQ+ LG +Q+ L+ + +
Sbjct: 5 EMSVSKAELKTLTQELLSGDNLL----AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G V+ LD+ +DI IN + +A+G + ++++D FGV++ EI +
Sbjct: 61 GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEISS 104
>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
Length = 131
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS + + + ++ + + LG +++ ++NL G VI L+K G++++I
Sbjct: 34 DSFRPERTISTSLSHLADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYF 93
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N++K AKGE+ ++ + F VR+ I+ +
Sbjct: 94 NDRKAAKGEVIVVNDS---FAVRINSIIPPK 121
>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
QCD-66c26]
gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
107932]
gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
QCD-76w55]
gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
QCD-97b34]
gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
QCD-37x79]
gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
QCD-32g58]
gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
Length = 124
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ ++ + V++ + + ++ E + +N I+++ +++ +++G M + +++
Sbjct: 8 SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
NL KG +I L+ + V+I I+N+ +A G++ +++ +FGV++ I++ +
Sbjct: 68 NLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117
>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
1251]
gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
denitrificans DSM 1251]
Length = 111
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ E S ++ ++++ V+ LG + + ++ L KG +I L K GESV+ +N
Sbjct: 16 DSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNG 75
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +GE+ + E+ + +R+ E+L++
Sbjct: 76 RILGRGEVMVYEK---NLAIRINEVLDS 100
>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
Length = 150
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D Q+ S P +V+ + P + ++ + ++PV + +
Sbjct: 24 DEVKQEKEGSQPKQEEPPAAPAEEVERVEFPEFVQAPQGAKE--RGVNFFESVPVTLDLE 81
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LG+ + + ++ L K +I LDK GE+ + +N + +A GE+ ++ + +FG RV E
Sbjct: 82 LGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVIND---NFGFRVAE 138
Query: 143 I 143
+
Sbjct: 139 V 139
>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
Length = 102
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN +
Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
KGE+ + E+ + +R+ EIL+++
Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92
>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Pelagibaca bermudensis
HTCC2601]
gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Roseovarius sp. HTCC2601]
Length = 114
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ D ++N+ + +QI+LG M I+ L+ LS+G +I LDK +G+ V++ IN++ +
Sbjct: 27 SKGGANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLV 86
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
A+G++ +E+D GV +IEI+
Sbjct: 87 ARGDLVKLEDD--RLGVSLIEIVK 108
>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
Length = 105
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++ +N + L IPV + + + S + +S L++++ VI LDK
Sbjct: 4 SVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLA 63
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
GE +DI IN + E+ ++ E +G+R+I
Sbjct: 64 GEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 94
>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 318
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQ 80
P + V + + +S P +N ++ + + +I + +
Sbjct: 194 QEPAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVS 253
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ +G + +++ L KG ++TLDK+ G D+ +N + I K ++ + ++ F R+
Sbjct: 254 VRIGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDD---KFAARI 310
Query: 141 IEILNAQ 147
IEI+ +
Sbjct: 311 IEIIGKR 317
>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
Length = 104
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+
Sbjct: 17 NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 77 MVYEK---NLAIRINEILDSK 94
>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
Length = 89
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++M++PV++ ++LG + + L+ LS G+++ L+++ E VDI ++ + +A+G++ +
Sbjct: 12 MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVV-- 69
Query: 131 EDDTHFGVRVIEILNAQ 147
D GV + EI++++
Sbjct: 70 -TDGQLGVTLSEIIDSR 85
>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
Length = 123
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ IPV + + + S + + L+ +G VI LDK GE +D+ +N
Sbjct: 32 QQTPPIERDLSFFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGS 91
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
+ EI I+ + +G+ + ++L++
Sbjct: 92 LMGHAEIVIVND---KYGLHLTDVLSS 115
>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
Length = 104
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+
Sbjct: 17 NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76
Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
+ E+ + +R+ EIL+++
Sbjct: 77 MVYEK---NLAIRINEILDSK 94
>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
Length = 123
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
L + + + + ++ +++ L+ IPV + + + S + +++L+N+
Sbjct: 14 LTTEAPAAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDT 73
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
VI LDK GE +DI +NN + K E+ ++ E +G+RV+E +
Sbjct: 74 VIELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEFNTQE 117
>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 128
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
P++ ++ S + + ++PV + LG + + ++NLS G +I LD GE
Sbjct: 27 TPLTPGGEQRIKTSIKHIE---DVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGEL 83
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V ++INNQK +GE+ ++ + ++G+R+ +
Sbjct: 84 VTMSINNQKFGRGEVMVIND---NYGIRITSVFKP 115
>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
Length = 127
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V
Sbjct: 19 ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
I LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 79 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116
>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
Length = 127
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V
Sbjct: 19 ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
I LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 79 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116
>gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
Length = 98
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S + T N + IM++P+++ + LG + + + L++G VI ++K V
Sbjct: 1 MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I N AKGE+ + GVR+ EI+ A
Sbjct: 61 ILANGSIFAKGEVVSTGD---KLGVRITEIVPA 90
>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 127
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 20 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 80 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116
>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 129
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
N SE + + +++ + +N L + L IPV + + + S + +S L++
Sbjct: 15 NFSEQENEVSAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMS 74
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
++ VI LDK GE +DI IN + E+ ++ E +G+R+I
Sbjct: 75 VNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 118
>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
Length = 123
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+DV +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 16 DDVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
Length = 114
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ P S++ K+T +L+ + +++ +LG + + L+ L +G VI LD+ G
Sbjct: 9 VFSPFSTE-KAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAG 67
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E+VD+ ++ QK +GE+ ++ E F VRV+++ Q
Sbjct: 68 EAVDLLLDGQKFGRGEVMVLNE---RFVVRVLQVFPPQ 102
>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
Length = 102
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
++ V++ + LG M + +++ + +G V+ L++ E +D+T N + +A+GE+
Sbjct: 8 LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIA 67
Query: 129 MEEDDTHFGVRVIEILN 145
D F +R++E++
Sbjct: 68 ---QDGRFALRIVELVG 81
>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
Length = 123
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V
Sbjct: 15 ADEVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 74
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
I LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 75 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
kujiense DSM 16994]
Length = 114
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ E S ++D ++++ V+ LG + + ++ L KG VI L K GESV+ +N
Sbjct: 18 DPEKELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNR 77
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ I KGE+ + E+ + +R+ E+L++
Sbjct: 78 RIIGKGEVMVYEK---NLAIRINEVLDS 102
>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
Length = 112
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
V+ I P +DS L + L IPV + + + S + +S L+ ++ VI LD
Sbjct: 11 PVEPIEAPSVNDS---LHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELD 67
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
K GE +DI +N + E+ ++ E +G+R++
Sbjct: 68 KLAGEPLDIKVNGIMFGQAEVVVINE---KYGLRIVS 101
>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
Length = 127
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
++V +++ +++ + + +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 20 DEVAPVAKSADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 80 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116
>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
[Escherichia coli UMN026]
gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Shigella sp. D9]
gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O26:H11 str. 11368]
gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O111:H- str. 11128]
gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli H736]
gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli]
gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Escherichia coli UMN026]
gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O26:H11 str. 11368]
gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O111:H- str. 11128]
gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli 042]
gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
EPECa14]
gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
1180]
gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
1357]
gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
RN587/1]
gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
KO11]
Length = 123
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 16 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 128
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
D P+ D ++ + + +++ ++ + + + N N LI +IPV++
Sbjct: 7 AFDEPMDDLDLLGDDLDFDGPAMADELSSLPQDTALPTGN-----KSNMGLIRDIPVEVT 61
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + + + ++++ VI LDK+ GE VDI IN G I I D +GV+V
Sbjct: 62 VEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIII---QDGKYGVQV 118
Query: 141 IEILNAQ 147
+ ++N +
Sbjct: 119 LALVNNE 125
>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
LT-68]
Length = 123
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI
Sbjct: 16 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
LDK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
Length = 133
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + L IPV + + + S + ++ L+ + VI LDK GE +D
Sbjct: 37 QAEPESPAGIDDLRKMALFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLD 96
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I +N K E ++ + +G+R++E + +
Sbjct: 97 IKVNGILFGKAEAVVLND---KYGLRILEFNSKE 127
>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
Length = 288
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI
Sbjct: 198 VTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKI 257
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
+GE I+E FG+++ I+N
Sbjct: 258 GEGEAVIVE---GKFGLKIKRIINE 279
>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
Length = 123
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ ++ +D+ L+ IPV + + + S + +++L+N+ VI LDK GE +DI +NN
Sbjct: 32 TRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNN 91
Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142
+ K E+ ++ E +G+RV+E
Sbjct: 92 ILLGKAEVVVVNE---KYGLRVLE 112
>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 113
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 54 ISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+ D +I E ++ ++ IPV++ + +G + +++L++ G + L++ GE
Sbjct: 17 LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ I +N + GE+ + E H+G+R+IE+
Sbjct: 77 LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105
>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
Length = 104
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + E S ++ I+++ V+ LG + ++ ++ L KG +I L K GESV+
Sbjct: 4 TKEFDPKKELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVES 63
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + + KGE+ + E+ + +R+ E+L++
Sbjct: 64 YVNGRILGKGEVMVYEK---NLAIRINEVLDS 92
>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
Length = 127
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
++ N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN
Sbjct: 44 KEHVSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFG 103
Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
GEI + +GVR++ I+
Sbjct: 104 TGEIV---SKNGQYGVRLLSIIKK 124
>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
Length = 100
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ +D+ S+P D+++ I + PV++++++G+ +++ +L+ L +G
Sbjct: 1 MANIDDLLGASDPNDGDASSFA---------IGDAPVEIKVVIGTAMLRVRDLLKLGRGA 51
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V+ LD+ + + D+ + +A+GE+ I+++ GV + + + +
Sbjct: 52 VVELDRHLKDPTDVYVEGVLVARGEVAIIDD---KIGVTLTDFIKS 94
>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
Length = 98
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
D+ +LE + + N+P+++ I +G + L+ L + V+ LD+R+ + V+I
Sbjct: 6 PDAKPLLEGANP---ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I ++ IA+GE+ E++ VR+ E+
Sbjct: 63 IGDRLIARGELQESEDEPGQLAVRLTEVATT 93
>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
Length = 94
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P+++ I +G + L++L++ ++ LDK + + VDI + ++ IA+GE+ +E+ +
Sbjct: 15 DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74
Query: 134 -THFGVRVIEILNA 146
+ VR+ EI++
Sbjct: 75 ISQLAVRLTEIIDP 88
>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 115
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 53 PISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
P + ++ D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ G
Sbjct: 17 PTDAPADTATTADAPRRDPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAG 76
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
E + + +N + E+ + E ++G+++I++
Sbjct: 77 EPLLVKVNGTTVGHAEVVVSGE---NYGLKIIDL 107
>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 123
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
L + + + ++ +++ L+ IPV + + + S + +++L+N+
Sbjct: 14 LAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDT 73
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
VI +DK GE +DI +NN + K E+ ++ E +G+RV+E
Sbjct: 74 VIEMDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112
>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
14863]
gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 227
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++++I + + + LG + + ++++ G VITLD+ E +++ +N E+ +
Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208
Query: 131 EDDTHFGVRVIE 142
E +G+R++E
Sbjct: 209 E---KYGIRIVE 217
>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 90
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + + + V+ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N + IA+
Sbjct: 9 GAKHQEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARA 68
Query: 125 EITIMEEDDTHFGVRVIEILN 145
E+ ++E+ H V V E+L
Sbjct: 69 EVVVVED---HLAVTVTEVLK 86
>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
Length = 127
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN
Sbjct: 41 EAEQSDVSNVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGT 100
Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
GEI + +GVR++ I+
Sbjct: 101 AFGTGEIV---SKNGQYGVRLLSIIKK 124
>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 78
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +
Sbjct: 3 FSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAI 59
Query: 139 RVIEILNA 146
R+ EIL++
Sbjct: 60 RLNEILDS 67
>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 101
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+ + +EK ++ +++ V + +G M I +++L +G +I L K GES ++
Sbjct: 2 EEKFDDVEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVY 61
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+N + I KGE+ + E+ + +R+ E+L+A
Sbjct: 62 VNGRIIGKGEVMVYEK---NLAIRLNEVLDA 89
>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
Length = 111
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N
Sbjct: 21 ATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVN 80
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143
+ E+ + E ++G++VI++
Sbjct: 81 GTTVGHAEVVVSGE---NYGLKVIDL 103
>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
Length = 124
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 45 NDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+DV +P S + L+ NI +++ +G+ + + L+ L +GDV+
Sbjct: 15 DDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLE 74
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
LDK +G+ +D+ I+ ++ A GE+ ++ E +GVR+
Sbjct: 75 LDKSIGDLIDLFIDGRRFAVGEVVVINEM---YGVRIT 109
>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 95
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
+ + LG +++ L+N KG ++ K GE VD +N + +A GEI +++E F
Sbjct: 17 DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDE---RFA 73
Query: 138 VRVIEILNAQ 147
VR+ EIL +
Sbjct: 74 VRITEILEKE 83
>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 462
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++ +++ + D +IP+ + +G M + LV L G+++ L+ + +D+ +N
Sbjct: 382 ASTANKQTAPSID---DIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVN 438
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143
+++A+GE+ + + GVRV+EI
Sbjct: 439 GKRVARGELLSIGDA---LGVRVLEI 461
>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
Length = 90
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
++ + + + +P+++ I +G + +L+ + + ++ LD+RV + V++ + ++ I
Sbjct: 1 MDDTAPSSNPFSQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLI 60
Query: 122 AKGEITIME-EDDTHFGVRVIEILNAQ 147
A+GE+T ME + + VR+ E+++ Q
Sbjct: 61 ARGELTEMEGDSNGQLAVRLTEVVDLQ 87
>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 88
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ +P+++ I +G + L+ L + V+ LD+RV + VD+ + ++ I +GE+T +
Sbjct: 7 NPFSQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTEL 66
Query: 130 E-EDDTHFGVRVIEILNAQ 147
E + VR+ E+ N +
Sbjct: 67 EGDQAGQLAVRLTEVANLR 85
>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei]
gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
Length = 115
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ +
Sbjct: 38 LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSG 97
Query: 131 EDDTHFGVRVIEI 143
E ++G+++I++
Sbjct: 98 E---NYGLKIIDL 107
>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
Length = 115
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ +
Sbjct: 38 LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVVSG 97
Query: 131 EDDTHFGVRVIEI 143
E ++G+++I++
Sbjct: 98 E---NYGLKIIDL 107
>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
Length = 95
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
N EK F+ +IP+KM L + +++ +L+ +GD+I +K GE ++I I N
Sbjct: 2 NPNREKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIEN 61
Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + GE+ +++ F +R+ I
Sbjct: 62 KPLGMGEVIVLD---NKFAIRITNIFTK 86
>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
Length = 112
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+IPV++++++G + L+ + G VI +D+ + VDI +N + IAKGE+ I++
Sbjct: 41 DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIID--- 97
Query: 134 THFGVRVIEILNAQ 147
GV++ E++ Q
Sbjct: 98 GKIGVKIKEVVKEQ 111
>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
translocase SctQ) [Candidatus Protochlamydia amoebophila
UWE25]
Length = 445
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
E+ ++ + SS +++I E + IPV + + +G M + +L+ L
Sbjct: 342 EVTEEEQSSPKNNASQSSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMDHLLKLEP 401
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G+++ L+ + + VD+TIN + + +GE+ + E GVRV+E+
Sbjct: 402 GNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443
>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 134
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + +IPV + I L + I L+ KG ++ L+ + + ++I INN IA GE+
Sbjct: 56 DSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELV 115
Query: 128 IMEEDDTHFGVRVIEILN 145
+ ++ +GV++ ++L
Sbjct: 116 V---NNDCYGVQITKLLT 130
>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 111
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++ E +++ + DL+ ++ V + + LGS + + L+ L G ++TLD+++
Sbjct: 16 DLPEHEPAETTEARPVAHPRLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQL 75
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ VD+ +N + +A+ EI +++ FG+R++EI+ +
Sbjct: 76 DDCVDVRLNERTVARAEIVAVDD---RFGIRIVEIVEER 111
>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
Length = 88
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ + + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+
Sbjct: 4 ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGEL 63
Query: 127 TIME-EDDTHFGVRVIEILNAQ 147
T +E E VR+ E+ N +
Sbjct: 64 TELEGEQAGQLAVRLTEVANLR 85
>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
Length = 109
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P + +K + + ++P+++ + +G I +L+ L + V+TLDKRV + V
Sbjct: 10 PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69
Query: 113 DITINNQKIAKGEITIM-EEDDTHFGVRVIEILN 145
D+ + ++ +A+G++ + E VR+ EI +
Sbjct: 70 DLYVGDRLVARGQLEELTGEQAGQLAVRLTEISD 103
>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 93
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ +PV++ ++LG ++++ L+ L +G V+ L++++ E V+I N+ +A+GE+ I +
Sbjct: 15 VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITD- 73
Query: 132 DDTHFGVRVIEILNA 146
GV + E++ +
Sbjct: 74 -GDKIGVTLTELVRS 87
>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 88
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+ + + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+
Sbjct: 4 ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGEL 63
Query: 127 TIME-EDDTHFGVRVIEILNAQ 147
T +E E VR+ E+ N +
Sbjct: 64 TELEGEQAGQLAVRLTEVANLR 85
>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
HTCC2601]
gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
Length = 95
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G + +L+ L G V+TLDKR+ + V++ + ++ I G + +++ ++
Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78
Query: 134 THFGVRVIEILN 145
VR+ E+++
Sbjct: 79 GQLAVRLTEVVD 90
>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
Length = 151
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
Q + ++ D+ N ++ +++ + I ++Q+ +G+ + + L+
Sbjct: 39 PTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGAK 98
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ V+ LD+ + VD+TI + +A+G++ ++ HF VR+ E+
Sbjct: 99 EHQVLRLDREIDHPVDLTIEGKVVARGQLVAVD---GHFAVRITEL 141
>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 94
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ + + + LG I L++ +G +I L+K GE VD+ +NN+ +A GEI +++E
Sbjct: 12 DVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVLDE-- 69
Query: 134 THFGVRVIEI 143
F R+ +I
Sbjct: 70 -KFAFRLSDI 78
>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
Length = 89
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ + +P+++ I +G Q+ +L+ L + V+ LD+RV + V++ + ++ IA+GE
Sbjct: 4 AADSNPFSQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGE 63
Query: 126 ITIME-EDDTHFGVRVIEILNAQ 147
+ ++ + VR+ E+ N +
Sbjct: 64 LQELDGDQAGQLAVRLTEVANLR 86
>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
Length = 252
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ G M + +++ L G V+ LD+ + + V++ ++ + IA+G + +++ ++G+R
Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVD---GNYGLR 242
Query: 140 VIEI 143
V E+
Sbjct: 243 VAEV 246
>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 109
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+ + +I + + LG M + ++ L +G ++ L K GESVD+ +N +A
Sbjct: 15 EELLKKLEWYGDIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLA 74
Query: 123 KGEITIMEED 132
EI ++E++
Sbjct: 75 TAEIVVIEDN 84
>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
Length = 95
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G + +L+ L +G V+TLDKR+ + V++ + ++ I G + ++E ++
Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78
Query: 134 THFGVRVIEILNAQ 147
VR+ E+++ +
Sbjct: 79 GQLAVRLTEVVDLK 92
>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 133
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++ +I + + + LG ++I +L+N SKG ++ L ++ + + + NN+ IA GEI
Sbjct: 53 ILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF-- 110
Query: 131 EDDTHFGVRVIEILNA 146
+ +G+R+I I N+
Sbjct: 111 -SNNKYGIRIISINNS 125
>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
Length = 95
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ + ++ + IP+++ + +G I +L+N+ + V+TLDKRV + VD+ + +
Sbjct: 2 SDPSQTKSEKQNPFEAIPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGD 61
Query: 119 QKIAKGEITIME-EDDTHFGVRVIEILN 145
Q +A+G + ME E VR+ EI +
Sbjct: 62 QLVARGLLEEMEGEHAGQLAVRLTEISD 89
>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
Length = 95
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G + L+ L++G V+ LDK++ + V++ + + I G + ++E +
Sbjct: 19 VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78
Query: 134 THFGVRVIEILNAQ 147
VR+ E+++ Q
Sbjct: 79 GQLAVRLTEVVDLQ 92
>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
profundicola AmH]
Length = 103
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+E+ ++ +++ V + LG + + ++ L KG VI L K GES ++ IN + I
Sbjct: 11 IEEFIPDYSNLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRII 70
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
KGE+ + E+ + +R+ E+L+A
Sbjct: 71 GKGEVMVYEK---NLAIRLNEVLDA 92
>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
centenum]
gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 103
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ ++D+D + + E I + V++ ++LG+ +++ +L+ L +G
Sbjct: 1 MADQDDIDAMFGGQAEPKKADSE--LPEISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGA 58
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
++ LD+++ + DI ++ + + +GE+TI+E+
Sbjct: 59 IVELDRKIDDLSDIIVSGRMVGRGEVTIVEDK 90
>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
Length = 110
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D + + + + ++P+ + + + S + + L +GDV+ LDK GE++D+ +
Sbjct: 21 DDKSANKTNEGSMSFFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKV 80
Query: 117 NNQKIAKGEITIMEEDDTHFGVR 139
N AK E+ ++E +G++
Sbjct: 81 NGVFFAKAEVVMVE---GQYGLK 100
>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
Length = 98
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ + KS D + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ +
Sbjct: 3 ETGELNPKSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62
Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
++ +A+G++ ME + VR+ EI + Q
Sbjct: 63 GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94
>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
Length = 95
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD + + ++ F+ +P+++ + +G I +L+N+ + V+TLD+R+ + VD+
Sbjct: 2 SDPQSRNPEKSNPFEA---VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLY 58
Query: 116 INNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
+ +Q +A+G + ME + VR+ EI + Q
Sbjct: 59 VGDQLVARGLLEEMEGDQAGQLAVRLTEISDLQ 91
>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 353
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 52 EPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
P + D N+++ + + + DL + ++P+ + LGS + ++ L ++ G ++ L
Sbjct: 259 PPYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLA 318
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ VD+ +N +++ +GE+ + + GVR+
Sbjct: 319 HDEVDLMVNGRRVGRGELVTIGDG---LGVRL 347
>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
Length = 83
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+F L+ +I +KM + LGS I +++L +GDVI L++ + +D+ +N +K+A GEI
Sbjct: 10 DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69
Query: 128 IMEEDDTHFGVRVIEI 143
++ + +GVR++++
Sbjct: 70 VIND---KYGVRIVDL 82
>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
TM1040]
gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
Length = 98
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
++ + K+ + + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ +
Sbjct: 3 ETGELNPKAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62
Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
++ +A+G++ ME + VR+ EI + Q
Sbjct: 63 GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94
>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
Length = 329
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLI 72
++ + +D + T + +V+ + + + ++ ++ N +LI
Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATLEAPKNLNLI 249
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
M+I + ++I +G M I ++++L G +I LDK + E +DI +N
Sbjct: 250 MDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295
>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
Length = 301
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V+++S S + + D + +I V++ LG + + ++ G V+ LD+
Sbjct: 188 VEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDR 247
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + VD+ +N + A G + + ++ + +R+ E+
Sbjct: 248 KADDPVDLYVNGLRFASGTLVLTDD--GEWALRLAEVAG 284
>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
CMR15]
Length = 132
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 27 QDTNVSSP--TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
QD + P + ++ + E IS+ + + + + + + + ++ + +G
Sbjct: 12 QDPGFAEPHGAQPVAQTLALGELHSTGEAISN-APLLNGATPSSANPLHRVKAQLTVCVG 70
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ + + L+ V+ LD +V + VD+ + + +A+G++ ++E HFGVR+ E+
Sbjct: 71 TATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HFGVRITEL 126
>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
Length = 96
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI-MEEDD 133
+P+++ I++G + L+ L + V+ LD+ V + V++ + ++ IA+GE+ +
Sbjct: 20 VPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAGGEP 79
Query: 134 THFGVRVIEI 143
VR+ E+
Sbjct: 80 GQLAVRLTEV 89
>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
Length = 56
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 45/54 (83%)
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54
>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
Length = 99
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I ++PV + + +G + + ++ L VI L +V + VD+ I+++ IAKGE+ E
Sbjct: 22 IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGELV--ET 79
Query: 132 DDTHFGVRVIEILNA 146
DD V+++EI+
Sbjct: 80 DDGQIAVKIVEIIEK 94
>gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
CCS2]
gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
CCS2]
Length = 94
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ +D + NIP+++ + +G + +L+ LS+ ++ LD ++ + V+I I ++ IA+
Sbjct: 6 EQSDKSHPLHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIAR 65
Query: 124 GEITIMEE-DDTHFGVRVIEILNAQ 147
GE+ + + VR+ E+ + +
Sbjct: 66 GELQEADGAEPGQLAVRLTEVAHDK 90
>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 95
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+E + +DL+++ + + ++LGS + I + ++L +GD+++LDK G DI +N++ I
Sbjct: 1 MEINDRAYDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRII 60
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
G+I +++E VRV + +++
Sbjct: 61 GTGDIIVIDE---KLAVRVQDAMDS 82
>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
Length = 128
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
DS + I ++ V + LG ++ ++NL G V+ ++K G+++++ I
Sbjct: 34 DSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYI 93
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N+ K A+GEI I+ + F VR+ I + +
Sbjct: 94 NDIKAAQGEIIIVND---KFAVRINSITSPK 121
>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
Length = 119
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH187]
gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
Length = 119
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 119
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +++ K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99
>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
Length = 119
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
Length = 119
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 119
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 80
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ K + ++ + + + +G + ++ ++ L +GD+I DK++ + +D+ +N QK
Sbjct: 1 MTKQDKRLEDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKF 60
Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
GE+ I+ + + +R+++++
Sbjct: 61 GIGELVIVND---KYSLRLVDLV 80
>gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein
[Legionella drancourtii LLAP12]
gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein
[Legionella drancourtii LLAP12]
Length = 101
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
L+ +I V+ + +G+ + I+ L L G + L+++ E V+I +N + IA+GE+
Sbjct: 28 LGLVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELM- 86
Query: 129 MEEDDTHFGVRVIEILN 145
+ HF V++ EI +
Sbjct: 87 --SHEDHFAVQITEIYS 101
>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 119
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
Length = 119
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 82
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + ++PV +++ L M +++ L +G VI + GE++DI I G
Sbjct: 3 PKEEVAPLGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSG 62
Query: 125 EITIMEEDDTHFGVRVIE 142
EI ++E GVR+ +
Sbjct: 63 EIVVIENT---LGVRITD 77
>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Bacillus anthracis str. A2012]
gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. Ames]
gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
str. Sterne]
gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
Length = 119
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G V
Sbjct: 12 ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
D+ ++N K+ GE +M+E FG+ + EI
Sbjct: 72 DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
Length = 98
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM-EEDD 133
+P+++ + +G I +L+ L K V+ LD+RV ++V++ + + IA+G++ + +
Sbjct: 22 VPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQQ 81
Query: 134 THFGVRVIEILNAQ 147
VRV E+ N Q
Sbjct: 82 GQIAVRVTEVANLQ 95
>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 119
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
Length = 119
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G V
Sbjct: 12 ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
D+ ++N K+ GE +M+E FG+ + EI
Sbjct: 72 DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
KBAB4]
gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
Length = 119
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +++ K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99
>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
Hakam]
gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
Length = 119
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium
nodulans ORS 2060]
gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium
nodulans ORS 2060]
Length = 101
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
++ ++ V + ++LG M I L+ + +G VI LD + V+I N+ IA+G+I +
Sbjct: 1 MAVLEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVV 60
Query: 129 MEEDDTHFGVRVIEIL 144
V V E++
Sbjct: 61 ---TGNRISVEVTELI 73
>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
Length = 119
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I + + + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
B4264]
gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 119
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
Length = 109
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 3 LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 63 VYLSNMKVGIGEAIVMDE---KFGIIISEI 89
>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
Length = 119
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
Length = 97
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E +
Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80
Query: 134 THFGVRVIEILNAQ 147
VR+ E+++ +
Sbjct: 81 GQLIVRLTEVIDLK 94
>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
Length = 119
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99
>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
SL003B-26A1]
gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
gilvum SL003B-26A1]
Length = 88
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
I V + ++LG+ M + L+ + +G VI LD + V I NN +AKG++ ++ E
Sbjct: 7 ISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGE--- 63
Query: 135 HFGVRVIEIL 144
GV + E+L
Sbjct: 64 RIGVSITEVL 73
>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
Length = 119
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG +Q+ ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +++ K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99
>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 101
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ D + E + ++ + +LI ++ V++ + LG M + L L GD
Sbjct: 1 MTATVDAIELEEARVAVNDGQSPLIKRDMNLIKHVVVELVVQLGHASMSVDELFALKAGD 60
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
V+ L ++V E + ++ + +A+G + +++ +FG+++ EIL
Sbjct: 61 VVKLLEQVHEPASLCLDGKPVARGNLVAVDD---NFGIQLTEIL 101
>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
Length = 119
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG +++ ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +++ K+ GE +M+E FG+ + EI
Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99
>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
Length = 109
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 3 LEDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ ++N K+ GE +M+E FG+ + EI
Sbjct: 63 VYLSNMKVGIGEAIVMDE---KFGIIISEI 89
>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
Length = 119
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD
Sbjct: 13 LEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +++ K+ GE T+M+E FG+ + EI
Sbjct: 73 VYLSDIKVGIGEATVMDE---KFGIIISEI 99
>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
MCS10]
Length = 99
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ I ++ V++ ++LG M I + + +G VI LD + V I NN IA+G++
Sbjct: 17 DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76
Query: 128 IMEEDDTHFGVRVI 141
I + V +
Sbjct: 77 IQGD---RIAVSIT 87
>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
Length = 309
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++ I +++ + L S M++ + L G +I DK ES+D+ + +IA+GE + +
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283
Query: 132 DDTHFGVRVIEILNAQ 147
FG+RV +L +
Sbjct: 284 ---KFGMRVTNVLLPE 296
>gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
Length = 88
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ +I V + ++LG M I L+ + +G VI LD + V+I N +A G++ +
Sbjct: 1 MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60
Query: 129 MEEDDTHFGVRVIEIL 144
+ E G+ V E+L
Sbjct: 61 LGE---RIGISVTEVL 73
>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
Length = 97
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD- 133
+P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + ++D
Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80
Query: 134 THFGVRVIEILNAQ 147
VR+ E+++ +
Sbjct: 81 GQLIVRLTEVIDLK 94
>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
Length = 100
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
+P+++ + +G I +L+ L K V+ LD+RV + V++ + + +A+G + ++ +
Sbjct: 23 VPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQQ 82
Query: 134 THFGVRVIEILNAQ 147
VRV E+ N Q
Sbjct: 83 GQIAVRVTEVANLQ 96
>gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium
radiotolerans JCM 2831]
gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium
radiotolerans JCM 2831]
Length = 122
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V + ++LG M + L+ + +G VI L+ + V+I N+ IA+G+I + +
Sbjct: 28 LKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGD--- 84
Query: 135 HFGVRVIEIL 144
V V E++
Sbjct: 85 RISVEVTELI 94
>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
Length = 79
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + ++ VK+ +G ++ L +GD+I LDK + + V++ + +Q A GE+
Sbjct: 6 DISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELI 65
Query: 128 IMEEDDTHFGVRVIEI 143
+ E +G+RV+++
Sbjct: 66 VANE---KYGIRVVDL 78
>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
391-98]
Length = 554
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 40 MLIQKNDVDNISEPISSDSN----NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
I++ +V+ I EP + E + ++ N+ + ++ + GS I ++++
Sbjct: 449 ASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILS 508
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
L + D + LD+ V E + I +NN +A GE+ ++ FGV+V
Sbjct: 509 LHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVD---GFFGVKVT 551
>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
Length = 547
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
Length = 101
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
++ + V + ++LG M I L+ + +G VI LD + VDI N+ IA+G+I +
Sbjct: 1 MAVLEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60
Query: 129 MEEDDTHFGVRVIEIL 144
V V E++
Sbjct: 61 ---TGNRISVEVTELI 73
>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
Length = 95
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+E S +DL+++ + + ++LGS + + + L++GD+I+L K G +I +N++ I
Sbjct: 1 MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
G+I +++E VRV + +++
Sbjct: 61 GTGDIIVIDE---KLAVRVQDAMDS 82
>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
Length = 108
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
P+ + L S + + + V++Q++LG + + L+ + +G VI LD V E V
Sbjct: 10 PLRAKPLVPLAWSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEV 69
Query: 113 DITINNQKIAKGEITIMEED 132
I NN +A+GEI I ++
Sbjct: 70 WILANNHPVARGEIQISDDK 89
>gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ
[Sinorhizobium fredii NGR234]
gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ
[Sinorhizobium fredii NGR234]
Length = 351
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + S+ + + ++P+++ +G + + + +G V+ + V I
Sbjct: 263 SAMSKQQPPSSGELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSIL 322
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
N + + KGE+ + E G+RV+
Sbjct: 323 ANGRLVGKGELIRIGEG---LGIRVV 345
>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
Length = 88
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
I V + ++LG M + L+ + +G VI LD E V I NN +AKG++ ++ E
Sbjct: 7 IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63
Query: 135 HFGVRVIEIL 144
G+ + E+L
Sbjct: 64 RIGISITEVL 73
>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
Length = 89
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
++ +P+ + + +G + L+ L K V+ LDKR+ + V++ + IA+G +
Sbjct: 10 SPLVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG-VLEE 68
Query: 130 EEDDTHFGVRVIEILNAQ 147
+ D VR+ E+++ +
Sbjct: 69 DADSHRLSVRLTEVISPE 86
>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
Length = 321
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + +P+ +Q++LG + + L++L+ G V+ LD R G VDI + + +G
Sbjct: 231 EGLRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285
>gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
DSM 12885]
gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
DSM 12885]
Length = 322
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ + ++P+ + ++LG + + L+ L G V+ LD R G VD+ + + +G +
Sbjct: 231 EGLRHVPLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRG---LP 287
Query: 130 EEDDTHFGVRVIEILNAQ 147
V+V+E + +
Sbjct: 288 GRAGPRLAVQVVERVAEE 305
>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 105
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ + + V++ ++LG + I + + +G VI LD + V I NN IA+GE
Sbjct: 22 AHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGE 81
Query: 126 ITIMEEDDTHFGVRVIE 142
I I + V + +
Sbjct: 82 IIIQGD---RVAVSITD 95
>gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246]
Length = 117
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
++PT+ ++ + + + + ++P+ + LG + I
Sbjct: 4 TTPTDPADPGVVARQAE-----FPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIG 58
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ L G V+ L++ + V++T+ A + HF VR+ +L
Sbjct: 59 EILTLGPGSVVELEEVISAPVELTVRGVPFAV---GEVVVVGEHFAVRIKNLLPP 110
>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
Length = 544
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541
>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
Length = 545
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 356
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 65 STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ + D + ++P+ + LG+ + ++ L ++ G ++ L + VD+ +N ++I +
Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336
Query: 124 GEITIMEEDDTHFGVRV 140
G++ + + GVR+
Sbjct: 337 GQLVSIGDG---LGVRL 350
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAK--GE 125
D ++ + ++M + G + S L +L GDV+ LD V + + + +A+ GE
Sbjct: 187 DPLVAVRLQMSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246
>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
++PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 515 PIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542
>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 544
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541
>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 546
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
Length = 545
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ + FGV+V
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 542
>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
Length = 547
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
Length = 547
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 546
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
Length = 98
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 356
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 65 STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ + D + ++P+ + LG+ + ++ L ++ G ++ L + VD+ +N ++I +
Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336
Query: 124 GEITIMEEDDTHFGVRV 140
G++ + + GVR+
Sbjct: 337 GQLVSIGDG---LGVRL 350
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK--GE 125
D ++ + +++ + G + S L +L GDV+ LD V + + + Q +A+ GE
Sbjct: 187 DPLVAVRLQLSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246
>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
Length = 546
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ + FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 543
>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
Length = 546
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
Length = 547
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 547
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
Length = 548
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 519 IRIYVNDVLVAYGELVNVD---GFFGVKVT 545
>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
Length = 548
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV++
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKMT 545
>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
KBAB4]
gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
Length = 548
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV+V
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545
>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
Length = 547
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
[Bacillus anthracis str. A2012]
gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
Ames]
gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
Sterne]
gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
Length = 547
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 453 AAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
Length = 546
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
Length = 142
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D+P + S + + T NF++IM+IP+ +QI+
Sbjct: 54 DSPFGGDDFGGDFGAGNASPAAGMDFGGSSSFEASPAPLGSALTSNFEMIMDIPIDVQIM 113
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGES 111
LG+ MQ+S L+NL++G I LDK++GE
Sbjct: 114 LGTSRMQVSGLMNLNEGATIALDKKIGEP 142
>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
Length = 98
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
Length = 548
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV+V
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545
>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 546
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
Length = 548
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 519 IQIYVNDVLVAYGELVNVD---GFFGVKVT 545
>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 546
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
+PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ I +N+ +A GE+ ++ FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543
>gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
HTCC2503]
gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
HTCC2503]
Length = 90
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 37/81 (45%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
N + +I + + +++G M + L + V+ L R E V++ ++ Q IA
Sbjct: 4 SAKAQNKQPLYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIA 63
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE+ + +R++++
Sbjct: 64 TGELCEGDTGPESLALRILDL 84
>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
Length = 396
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN--- 68
+ + S P T V+ + + L+ + +P+ S + E
Sbjct: 248 TERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLAQETMPQQSVT 307
Query: 69 ----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ + V++ + L M ++ L+ LS G ++T K + +DI I N++ A+G
Sbjct: 308 SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQG 367
Query: 125 EITIMEEDDTHFGVRVI 141
E + E HFGV+V
Sbjct: 368 EAVKIGE---HFGVKVN 381
>gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63]
gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08]
gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07]
gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08]
gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07]
Length = 104
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N V + + +G+ I N+++L +G +I L+K V E +DI N++ A GE I E
Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89
Query: 132 DDTHFGVRVIEILNA 146
VR+ +I ++
Sbjct: 90 ---KLSVRLSKIEDS 101
>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
cytotoxicus NVH 391-98]
Length = 119
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
E++ + D + +I +++ + LG +Q+ ++ NL GDV+ ++K +G VD+ +++
Sbjct: 19 QREEQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDI 78
Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143
K+ GE +M+E FG+ + EI
Sbjct: 79 KVGIGEAIVMDE---QFGIIISEI 99
>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
Length = 547
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+
Sbjct: 453 AAPVVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ E + I +N+ +A GE+ ++ FGV+V
Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544
>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
Length = 88
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+I V + ++LG M + L+ + +G VI LD + V I NN +A+G++T++ +
Sbjct: 6 DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTVVGD-- 63
Query: 134 THFGVRVIEIL 144
G+ + ++L
Sbjct: 64 -KVGIVITKVL 73
>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 318
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ +
Sbjct: 226 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 285
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
E + I +N+ +A GE+ ++ FGV+V
Sbjct: 286 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 315
>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
Length = 331
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N+ +++ +G + + ++L GDVI LDK + VD+ + ++ KG IM +
Sbjct: 254 LENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGK 310
Query: 132 DDTHFGVRVIEILNAQ 147
+ F VR+ ++++ +
Sbjct: 311 RNGRFAVRINKVISER 326
>gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ
[Mesorhizobium loti MAFF303099]
gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ
[Mesorhizobium loti MAFF303099]
Length = 354
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
+S + L+ S + + L + + ++ + + G + +
Sbjct: 241 ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLG 300
Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
L + +G + L + + + VDI N Q I +G+I + + G+R+
Sbjct: 301 ELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDT---LGIRL 346
>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 351
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 334 LVSIGDG---LGVRL 345
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
++NPL+ P ++ + + ++ + + + D ++ + + +
Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
G + + L +L GDV+ LD V
Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224
>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 351
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 334 LVSIGDG---LGVRL 345
>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
Length = 295
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIIL 83
PL V+ + + + S N + I +PV+ + L
Sbjct: 166 PLTKPPVTESVEPEADPAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKL 225
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
S ++++ L+++ G +IT DK + +++ INNQ GE + E HFG+++
Sbjct: 226 ASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE---HFGLKI 279
>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 351
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 334 LVSIGDG---LGVRL 345
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
++NPL+ P ++ + + ++ + + + D ++ + + +
Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
G + + L +L GDV+ LD V
Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224
>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 344
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 267 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 326
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 327 LVSIGDG---LGVRL 338
>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 351
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 334 LVSIGDG---LGVRL 345
Score = 34.1 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ + + G + + L +L GDV+ LD V
Sbjct: 189 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224
>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
Length = 103
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++
Sbjct: 27 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISDD--- 83
Query: 135 HFGVRVI 141
++V
Sbjct: 84 RIAIQVT 90
>gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42]
Length = 104
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N V + + +G+ I N+++L +G +I L K V E +DI N++ A GE I E
Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89
Query: 132 DDTHFGVRVIEILNA 146
VR+ +I +
Sbjct: 90 ---RLSVRLSKIEDP 101
>gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
DSM 6068]
gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
DSM 6068]
Length = 329
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
S P S + + K I+ I V +++ L + + + +V L G +I +K
Sbjct: 218 ASPPPSDNVEERIYKLPPYTRSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCD 277
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + + ++A GE + E FG+R+ ++
Sbjct: 278 SELSLQVGEHEVAIGEAVKVGE---KFGLRLTSMVMP 311
>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
Length = 98
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LV+L + ++TLDKRV + VD+ + ++ +A+G++ +E E VR+ E
Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
Length = 98
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
G I +LV L + ++TLDKRV + VD+ + ++ +A+G++ M+ E VR+ E
Sbjct: 30 GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89
Query: 143 ILNAQ 147
I + Q
Sbjct: 90 IADLQ 94
>gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329]
Length = 321
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + +
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 305 -HLGVRVLELFG 315
>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 301
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 284 LVSIGDG---LGVRL 295
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ + + G + + L +L GDV+ LD V
Sbjct: 139 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 174
>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 301
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+ D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE
Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283
Query: 126 ITIMEEDDTHFGVRV 140
+ + + GVR+
Sbjct: 284 LVSIGDG---LGVRL 295
>gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
2210633]
gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
Length = 328
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + +
Sbjct: 254 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 311
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 312 -HLGVRVLELFG 322
>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
Length = 326
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+S+P D L ++I +I V++ +LG + I ++ + GDVI L +R
Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284
Query: 109 GESVDITINNQKIAKG 124
E VD+ + AKG
Sbjct: 285 DEEVDLLVEGNLFAKG 300
>gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus K5030]
gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AN-5034]
gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus Peru-466]
gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ4037]
gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus Peru-466]
gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AN-5034]
gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ4037]
gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus K5030]
Length = 321
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + +
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 305 -HLGVRVLELFG 315
>gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ3810]
gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ3810]
Length = 321
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + +
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 305 -HLGVRVLELFG 315
>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
Length = 78
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ + N+ V++ ++LG M I L+ + +G VI L R E + + NN IA+GEI +
Sbjct: 1 MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60
Query: 129 MEEDDTHFGVRVIEIL 144
E V + +L
Sbjct: 61 QGE---RVAVSITTVL 73
>gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
Ex25]
gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
Ex25]
gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
Length = 322
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + E
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 306 -HLGVRVLELFG 316
>gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26]
gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932]
gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255]
gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55]
gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34]
gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79]
gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196]
gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291]
gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58]
gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196]
gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291]
Length = 104
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N V + + +G+ I N+++L +G +I L K V E +DI N++ A GE I E
Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89
Query: 132 DDTHFGVRVIEILNA 146
VR+ +I ++
Sbjct: 90 ---KLSVRLSKIEDS 101
>gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01]
gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01]
Length = 322
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + E
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 306 -HLGVRVLELFG 316
>gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus]
Length = 322
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + E
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 306 -HLGVRVLELFG 316
>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
Length = 165
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ EP + + + ++ + +IP+ + + +G M + L++L G+ I LD
Sbjct: 70 PIEESEEPALAAAQIVPDEEKLSAISPNDIPLSIILEVGRLKMSMQTLMDLQPGNTIELD 129
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
R +D+ +N ++AKGE+ + E + G+R++E+
Sbjct: 130 IRPESGIDLVVNGSRVAKGELLQVGE---NLGIRILEL 164
>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
Length = 83
Score = 61.4 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + +S L+ + +G VI LD G+ V I NN +A+GE +E D
Sbjct: 7 VDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGE---IEIRDD 63
Query: 135 HFGVRVI 141
+ V
Sbjct: 64 RIAITVT 70
>gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
Length = 111
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V+ + ++ + +D DL+ N+ V + + LG + ++ L L+ V+ ++K
Sbjct: 16 VEEVILEPMNEGGAGDKLKSDPLDLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMNK 75
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
++ + +++ ++ + +A+G++ +++ FG+++ E
Sbjct: 76 QLNDPIELLLDGKVVARGKLVAVDDV---FGIQITE 108
>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
Length = 332
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + LGS + + + L GD+I LDK E VDI I+ + +G I + +
Sbjct: 260 IPLTAQLGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316
Query: 137 GVRVIEIL 144
VR+ E++
Sbjct: 317 SVRITEVI 324
>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
Length = 85
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
I V++ I LG + ++ L L D++TLD+ + + V+I + ++ IA+GE+ +E D
Sbjct: 12 QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71
Query: 134 THFGVRV 140
VR+
Sbjct: 72 NRLCVRI 78
>gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii]
gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii]
gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii]
Length = 382
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
+ + L+ + S P+ +++ + L S + D +I + + G
Sbjct: 268 TRADLEGDHLVLRGPFRPQSRPLEYAHMTETESQLRPSDADLD---DIEIVLVFECGRWP 324
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + +L + G V L + + VDI N + I +G+I + ++ G+R+
Sbjct: 325 ISLGDLRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDE---LGIRL 374
>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
Length = 83
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++
Sbjct: 7 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63
Query: 135 HFGVRVI 141
++V
Sbjct: 64 RIAIQVT 70
>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
Length = 295
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+MN+ VK+ + L +++S L+NL G ++ K + +D+ +NN+ A+GE + E
Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273
Query: 132 DDTHFGVRVIEI 143
FG++V EI
Sbjct: 274 ---KFGLKVNEI 282
>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
K31]
Length = 83
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++
Sbjct: 7 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63
Query: 135 HFGVRVI 141
++V
Sbjct: 64 RIAIQVT 70
>gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 332
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + LGS + + + GD+I LDK E VDI I+ + +G I + +
Sbjct: 260 IPLTAQLGSTTITVKEFLEFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316
Query: 137 GVRVIEIL 144
VR+ E++
Sbjct: 317 SVRITEVI 324
>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
Length = 83
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ ++ T+ + +I +K+ +++G M S ++ L +GD+ITLDK++ + +++T+N+Q
Sbjct: 2 EVEKELTEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQ 61
Query: 120 KIAKGEITIMEEDDTHFGVRVIEIL 144
+ GE+ ++ + +R+++++
Sbjct: 62 EFGIGELIVIND---KVSLRLVDLV 83
>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 98
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + T + + NI V + + LG M + ++ L+ GD++ ++K+ G V+I +
Sbjct: 14 EPVPKGNRDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFL 73
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +K+ GE +M+E +FG+ + EI
Sbjct: 74 DEKKVGIGEAILMDE---NFGIVISEI 97
>gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630]
gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile]
Length = 104
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N V + + +G+ I N+++L +G +I L+K V E +DI N++ A GE I E
Sbjct: 30 VFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89
Query: 132 DDTHFGVRVIEILNA 146
VR+ +I ++
Sbjct: 90 T---LSVRLSKIEDS 101
>gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium
fredii NGR234]
gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK
gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium
fredii NGR234]
Length = 358
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 32 SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
+ + L+ + S P+ ++ + L S + D +I + + G
Sbjct: 244 TRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLD---DIEIVLVFECGRWP 300
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + L + G V L + + VDI N + I +G+I + +D G+R+
Sbjct: 301 ISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDD---LGIRL 350
>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 332
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + LGS + + ++ GD+I LDK E VDI I+ + +G I + +
Sbjct: 260 IPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316
Query: 137 GVRVIEIL 144
VR+ E++
Sbjct: 317 SVRITEVI 324
>gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius]
gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
Length = 338
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+ + D ++ + + + D + N+P+ ++ IL + + +
Sbjct: 227 SGAAAVHPKVRDGLAAAAPTPTGRLALGDDTAADPLANLPLTLEFILQRRYLSLGEIQQF 286
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+G V+ LD + ++I N +A GE+ +E+ GV ++E+
Sbjct: 287 RQGKVLELDPEGEKHIEIRANGHLLALGELVQLED---RLGVELMEL 330
>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
Length = 336
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S+++ + + I +IPVK+ + + +S L ++++G V LD+ ++V+
Sbjct: 248 MSNETIDQDLQGAPTIASIGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVE 307
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVI 141
I + I +GEI ++ VRV
Sbjct: 308 IVTQGRIIGRGEIVTLDGLT---AVRVT 332
>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
Length = 334
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 58 SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
SN E++ + + I P+++ +G + +++L+ L GDVI LDK+ E VD
Sbjct: 236 SNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVD 295
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
I I +G + + H V++ ++++
Sbjct: 296 IRIGKNVKFQG---VAGVSNKHMAVKITDVIS 324
>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 83
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + + L+ + +G VI LD + V I NN +A+GE +E D
Sbjct: 7 VDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGE---IEIRDD 63
Query: 135 HFGVRVI 141
+ V
Sbjct: 64 RIAITVT 70
>gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B]
gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B]
Length = 322
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L L G V L++ V + V + N + I + E+ + E
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTLRANGKIIGECELVNVNE-- 305
Query: 134 THFGVRVIEILN 145
H GVRV+E+
Sbjct: 306 -HLGVRVVELFG 316
>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
ATCC 49814]
Length = 80
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ +++ ++LG + + L+ + +G VI LD + V I NN IA+GE+ I E
Sbjct: 4 VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60
>gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 321
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV++ +G + + L +L G L++ + V + N + I + E+ + E
Sbjct: 247 QLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMRANGKIIGECELVNINE-- 304
Query: 134 THFGVRVIEILNA 146
GVRVIE+L
Sbjct: 305 -RLGVRVIELLGE 316
>gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 85
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
LGS + ++ L ++ G V+ + + VD+ +N ++I +GE+ + + GVR+
Sbjct: 24 QLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDG---LGVRL 79
>gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 321
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ +G + + L L G L++ + + V + N + I + E+ + E
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVTMRANGKIIGECELVNINE-- 304
Query: 134 THFGVRVIEILN 145
GVRV+E+
Sbjct: 305 -RLGVRVLELFG 315
>gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
Length = 332
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
MHI P P +S+ ++ +P ++ + + PV++
Sbjct: 214 MHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALR---------ERLRAAPVEI 264
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDDTHFG 137
+ +LG + +L++L+ GDVI L + V V+I + ++ + + + D
Sbjct: 265 RAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGV-----DHGRLA 319
Query: 138 VRVIEILNAQ 147
V++ EI + +
Sbjct: 320 VQITEIADDE 329
>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
Length = 504
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + + + + + + E
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 430
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503
>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J2-064]
Length = 99
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP S + S D NI V + + LG M + ++ LS GDV+ ++K+ G
Sbjct: 13 EPKESSQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+I ++ +K+ GE +M+E +FG+ + EI
Sbjct: 70 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 515
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + + + + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
Length = 502
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + K D+ I EP E ++ ++ +IPVK++++ G+ +++ +
Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + DVI L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501
>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
Length = 504
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + + + + + + E
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKSAEPVHQAVIEEKETLSEM 430
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503
>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 502
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + K D+ I EP E ++ ++ +IPVK++++ G+ +++ +
Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + DVI L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501
>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 100
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP + + S D NI V + + LG M + ++ LS GDV+ ++K+ G
Sbjct: 14 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 70
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+I ++ +K+ GE +M+E +FG+ + EI
Sbjct: 71 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 99
>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 99
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
EP + + S D NI V + + LG M + ++ LS GDV+ ++K+ G
Sbjct: 13 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+I ++ +K+ GE +M+E +FG+ + EI
Sbjct: 70 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 99
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 13 EPKETTLEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
Length = 504
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + + + ++EP+ E ++ ++ +IPV ++++ G+ +++ +
Sbjct: 397 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 456
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + DVI L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 457 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 503
>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
Clip81459]
gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 515
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + + + ++EP+ E ++ ++ +IPV ++++ G+ +++ +
Sbjct: 408 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 467
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + DVI L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 468 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 514
>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes Clip81459]
gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-208]
gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
L99]
gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 100
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 14 EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 73
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 74 FLDEKKVGIGEAILMDE---NFGIVISEI 99
>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-175]
gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 99
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 13 EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
Length = 330
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P E ++ K + + E + D IP+ + LGS + + +L
Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ GDVI LDKR E V++ I+ + KG I + V++ E++
Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322
>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
Length = 504
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 430
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 486
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503
>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 515
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
Length = 514
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ + + + +EP+ E ++ ++ +IPV ++++ G+ +++ +
Sbjct: 407 AEKATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 466
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ + DVI L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 467 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 513
>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
Length = 330
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P E ++ K + + E + D IP+ + LGS + + +L
Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ GDVI LDKR E V++ I+ + KG I + V++ E++
Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322
>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 502
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM-NIPVKM 79
I NP ++ + N + +++ + I+ +IPVK+
Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSEMEAILEDIPVKL 439
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+++ G+ +++ ++ + DVI L + + E + + +N I KG + +++ HFG++
Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILVRVDD---HFGIQ 496
Query: 140 VIEIL 144
+ E++
Sbjct: 497 MTELV 501
>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 99
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 13 EPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
Length = 379
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 27 QDTNVSSPTNN------SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
QD SS N S+ + + + SS + + + +PV++
Sbjct: 254 QDWEASSHENGIRLDTISKFDMTGKAKMKLDQNGSSGPSELGFMQKKKLSSLSQLPVELS 313
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVR 139
+ +G + + L NL G V + + E + + +N Q GE+ + GVR
Sbjct: 314 LQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG---NQLGVR 370
Query: 140 VIE 142
+ E
Sbjct: 371 ITE 373
>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 99
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 13 EPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 83
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V++ ++LG + +S L+ + +G VI LD + V I NN +A+G ++E +
Sbjct: 7 VDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARG---MIEIRED 63
Query: 135 HFGVRVI 141
+ V
Sbjct: 64 RIAITVT 70
>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
Length = 336
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+E + S S D+F L M +P+ +++ G + + L +L G V+TLD
Sbjct: 241 TEGSDAVSKREHLASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPG 299
Query: 111 SVDITINNQKIAKGEITIME 130
D+ IA+GE+ +E
Sbjct: 300 EADLYYGETLIAQGELVDVE 319
>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 99
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + NI V + + LG M + ++ LS GDV+ ++K+ G V+I
Sbjct: 13 EPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ +K+ GE +M+E +FG+ + EI
Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98
>gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium
populi BJ001]
gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium
populi BJ001]
Length = 101
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I +
Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65
Query: 137 GVRVIEIL 144
V V E++
Sbjct: 66 SVEVTELI 73
>gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 101
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I +
Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65
Query: 137 GVRVIEIL 144
V V E++
Sbjct: 66 SVEVTELI 73
>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
Length = 515
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
Length = 515
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
Length = 515
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
Length = 515
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 515
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + I + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 321
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ +G + + L L G L++ + V + N + I + E+ + E
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304
Query: 134 THFGVRVIEILN 145
GVRV+E+
Sbjct: 305 -RLGVRVLELFG 315
>gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii]
Length = 371
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 38 SEMLIQKNDVDNISEPI-----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
E L+ + + S P+ ++ S + D + + + G M I
Sbjct: 262 GERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSL---EITLVFECGRWPMSIGT 318
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
L ++++G V L + + VDI N Q+I +G+I + E+ VR+
Sbjct: 319 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEE---LAVRL 363
>gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium
extorquens PA1]
gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens AM1]
gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens
DM4]
gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium
extorquens PA1]
gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens AM1]
gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens DM4]
Length = 101
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I +
Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65
Query: 137 GVRVIEIL 144
V V E++
Sbjct: 66 SVEVTELI 73
>gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM
4136]
Length = 342
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
++ I + I SD +T+ L+ + V++ ++G+ + L +L+
Sbjct: 239 AAATWQDKKLTIQQFIMSDPAP-TPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAP 297
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G I L ++V I N + I KGE+ + GVR+ E+
Sbjct: 298 GACIELPTPASQAVTICANGRAIGKGELL---DIGNRIGVRITEL 339
>gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4]
gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4]
Length = 321
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
S + + +DN + I +N+ + S++ +P+++ +G + + L L
Sbjct: 210 SSQNLWRGQLDNTTLHIQEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNAL 269
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
G L++ V V + N + I + E+ + E GVRV+E+
Sbjct: 270 QPGFTFELNQPVSNPVTMRANGKIIGECELVNINE---RLGVRVLELFG 315
>gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
harveyi HY01]
gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
harveyi HY01]
Length = 321
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ +G + + L L G L++ + V + N + I + E+ + E
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304
Query: 134 THFGVRVIEILN 145
GVRV+E+
Sbjct: 305 -RLGVRVLELFG 315
>gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116]
Length = 322
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ +G + + L L G L++ + V + N + I + E+ + E
Sbjct: 248 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 305
Query: 134 THFGVRVIEILN 145
GVRV+E+
Sbjct: 306 -RLGVRVLELFG 316
>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 512
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
+ L + + EP+ + + E ++ +IPV ++++ G+ +++ ++
Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQ----ILEDIPVTLEVVFGTAKVKLEKFIS 465
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ DV+ L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 466 WCEKDVVILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 511
>gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi]
Length = 321
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+P+++ +G + + L L G L++ + V + N + I + E+ + E
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304
Query: 134 THFGVRVIEILN 145
GVRV+E+
Sbjct: 305 -RLGVRVLELFG 315
>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
Length = 513
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
I++++ ++P+ + L + + +IPV ++++ G+ +++ ++ + DV
Sbjct: 416 IKEHETKEPAQPVVMEEKETLSEMEQILE---DIPVTLEVVFGTAKVKLEKFISWCEKDV 472
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I L + + E + + +N I KG + +++ HFG+++ E++
Sbjct: 473 IILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 512
>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
excentricus CB 48]
gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
excentricus CB 48]
Length = 93
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++ ++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE
Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 74
>gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica]
gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica]
gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica]
gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica]
gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703]
gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica]
gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)]
gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 307
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
+ +V + L ++P+ +P ++ K + +S +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
K + + + PV++ +G + L +L G +I L V V + N + +
Sbjct: 226 NPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282
Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
G + E GVR+ E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304
>gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila
felis Fe/C-56]
Length = 371
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + + + LS+G ++ L+ VD+ +N K+ +GEI + +
Sbjct: 308 KLVAEVSRYSLTVEEFLKLSQGSILNLNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 364 -LGIRVLEV 371
>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
Length = 398
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
EP E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + +
Sbjct: 305 ETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E + + +N I KG + +++ HFG+++ E++
Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397
>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 502
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN-IPVKM 79
I NP ++ + N D +++ + I+ IPVK+
Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSEMEAILEAIPVKL 439
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+++ G+ +++ ++ + DVI L + + E + + +N I KG + + + HFG++
Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVND---HFGIQ 496
Query: 140 VIEIL 144
+ E++
Sbjct: 497 MTELV 501
>gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003]
gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038]
gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003]
Length = 305
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
+ +V + L ++P+ +P ++ K + +S +S+ +
Sbjct: 168 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 223
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ + + + PV++ +G + L +L G +I L V V + N + +
Sbjct: 224 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 280
Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
G + E GVR+ E+
Sbjct: 281 GHGRLV---EIQGRLGVRIERLTEV 302
>gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum]
gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
Length = 373
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
I + + G M + L +++G V L + + VDI N Q+I +G+I + E+
Sbjct: 303 IEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVRIGEE-- 360
Query: 135 HFGVRV 140
VR+
Sbjct: 361 -LAVRL 365
>gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92]
gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM]
gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM]
gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125]
gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola]
gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q
gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q
gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis]
gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10]
gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92]
gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola]
gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis PB1/+]
gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004]
gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis]
gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
Length = 307
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
+ +V + L ++P+ +P ++ K + +S +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ + + + PV++ +G + L +L G +I L V V + N + +
Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282
Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
G + E GVR+ E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304
>gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis]
Length = 307
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
+ +V + L ++P+ +P ++ K + +S +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ + + + PV++ +G + L +L G +I L V V + N + +
Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282
Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
G + E GVR+ E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304
>gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 338
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNLSKG 99
N ++NI + D + + ++ + ++P+ +++ G M + L L G
Sbjct: 229 NHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTLGELQQLQAG 288
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIME 130
V+TLD + + IA+GE+ +E
Sbjct: 289 SVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
>gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
Length = 313
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P N + + +N+ + S ++ ++ N I +IPV + +L S + I +
Sbjct: 202 PDENDLDDLIQLQQENLDDHNDVTSPTLVHDNSVNLQSINSIPVTVSFLLASKTLLIEQI 261
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+ GD I L + + + I +N +A GE+ + + +F V + +AQ
Sbjct: 262 EALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGD---NFAVEIQRSFSAQ 312
>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 329
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D I N V +++++G+ + + +L++ KGDVI ++KR + +++ IN++ G +
Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLG---VP 306
Query: 130 EEDDTHFGVRVIEILNA 146
+ + V++ EI +
Sbjct: 307 GIRNKKYCVQITEICSE 323
>gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 307
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S +S+ + K + + + PV++ +G + L +L G +I L V V
Sbjct: 218 MSHESDELNPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVR 274
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV---IEI 143
+ N + + G + E GVR+ E+
Sbjct: 275 LLANGRLLGHGRLV---EIQGRLGVRIERLTEV 304
>gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_CA4C1]
Length = 57
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I +
Sbjct: 1 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 49
>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
Length = 372
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
ISS + + + D ++ + V + LG + ++ L L +GDVI LD+ + +
Sbjct: 242 ISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPI 301
Query: 113 DITINN 118
+ +N
Sbjct: 302 KVFVNG 307
>gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125]
gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125]
Length = 330
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDD 133
P+ +Q LG + I ++L GDVI LD+ + E +++ + +A+ +
Sbjct: 258 PLLIQTELGRSEITIHEFLHLGIGDVIELDQSIHEPLNVRVGGHLKYLAQ-----PGKKK 312
Query: 134 THFGVRVIEILNA 146
H V+V +++
Sbjct: 313 NHLAVQVTDVIEE 325
>gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
Length = 309
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+++ + +P+ + +G + + L L G ++ LD + V I N + + GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGE 288
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++ GVRV +
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305
>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
Length = 515
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + +++ + + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKETTTPAEIIEPEKPAESVHQAVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIMEEDDTHFGVRVIEIL 144
+ +++ HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514
>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
Length = 398
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
EP E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + +
Sbjct: 305 ETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E + + +N I KG + +++ HFG+++ E++
Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397
>gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
Length = 309
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ + +P+ + +G + + L L G ++ LD + V I N + + GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ GVRV +
Sbjct: 290 VRLQD---RLGVRVTRLFG 305
>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 87
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+++ LI NI + + I L S L+NL +GD+I L+K + + V+I N+K+
Sbjct: 7 VDEIYKKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKV 66
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
GE+ + E +GVR+++++
Sbjct: 67 GFGELVNVNE---KYGVRLVDLIK 87
>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
Length = 323
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
++ +PV++ +G + + + + L GDVITL+K VGE +++ ++ +
Sbjct: 253 ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYVDGHHKFQ---VQPG 309
Query: 131 EDDTHFGVRVIEIL 144
+ V+V E++
Sbjct: 310 IVNKKIAVQVTEVV 323
>gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2]
gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
Length = 309
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ + +P+ + +G + + L L G ++ LD + V I N + + GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ GVRV +
Sbjct: 290 VRLQD---RLGVRVTRLFG 305
>gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
Length = 309
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ + +P+ + +G + + L L G ++ LD + V I N + + GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ GVRV +
Sbjct: 290 VRLQD---RLGVRVTRLFG 305
>gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct]
Length = 310
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ + +P+ + +G + + L L G ++ LD + V I N + + GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ GVRV +
Sbjct: 290 VRLQD---RLGVRVTRLFG 305
>gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
Length = 309
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
++ + +P+ + +G + + L L G ++ LD + V I N + + GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289
Query: 127 TIMEEDDTHFGVRVIEILN 145
+++ GVRV +
Sbjct: 290 VRLQD---RLGVRVTRLFG 305
>gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula
baltica SH 1]
gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment]
[Rhodopirellula baltica SH 1]
Length = 144
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + D +EP S+ EK ++ I + + L + ++ L G
Sbjct: 46 MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 98
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++T D + + IA GE + + FG+RV EI +
Sbjct: 99 MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 142
>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
20603]
gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
20603]
Length = 308
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ E + S E+ +F+ + ++PV + + S ++ ++++++ GDVI L
Sbjct: 209 KVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDVIEL 268
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ + I + + I G + + V+V +
Sbjct: 269 RHAASKPLRIVVEGRTIGHG---VPGNNGKQLAVKVTD 303
>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 97
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + +
Sbjct: 24 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77
>gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens]
Length = 309
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D PL P + K ++ + P S +S++ L + N ++
Sbjct: 185 PPQQQPDAPLLAYLEGRPWAYFKSHDHKLELITMHTPSSDNSDDTLPVTDLN-----DLE 239
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + +G + + L +L G ++ L V I +N + + G + + +
Sbjct: 240 VHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLV---DIEGRL 296
Query: 137 GVRV 140
GVR+
Sbjct: 297 GVRI 300
>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 87
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
LI +I + + I L S L+NL +GD+I L+K + + V+I +N+K GE+
Sbjct: 12 KKISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGEL 71
Query: 127 TIMEEDDTHFGVRVIEILN 145
+ +G R+++++
Sbjct: 72 VNVN---GKYGARLVDLIK 87
>gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
Length = 309
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ SE +++ D + PVK++ + ++++ L G V+ LD
Sbjct: 214 EQASEMRGDSQPGMMDGQAFQVDAL---PVKLEFAFRQRELTVADVARLHPGAVLPLDAG 270
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRV--IEILNAQ 147
V I N + +A GE+ + E V + IE+++ +
Sbjct: 271 AEHEVKIYANGRYLALGELIQVGE---RLAVEIQSIELVDPK 309
>gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
Ab9]
gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
Ab9]
gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 332
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + LGS + + +N GD+I LDK + VDI I+ +G I + +
Sbjct: 260 IPLTAQLGSTTITVKEFLNFEIGDIILLDKNFKDPVDIIIDKNVKFRG---IPGIRNNKY 316
Query: 137 GVRVIEIL 144
V++ E++
Sbjct: 317 SVKITEVI 324
>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
Length = 330
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++I++GS + + L+ L+ GDVI L++R+ E +++ I + +G+ ++
Sbjct: 259 VPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVG---NRL 315
Query: 137 GVRVIEILNA 146
+++ EI++
Sbjct: 316 ALKITEIVSE 325
>gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 309
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+++ + +P+ + +G + + L L G ++ LD + V I N + + GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++ GVRV +
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305
>gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei
BCC215]
Length = 335
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D + + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDASHDEPTAAHAPPAFDIDAL--- 260
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 316
>gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli
GR56]
gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli
CNPAF512]
Length = 339
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++
Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330
Query: 135 HFGVRVI 141
VRV
Sbjct: 331 --AVRVT 335
>gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
Length = 329
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+++ LG + I + L KGDV+ L++ + E +D+ + +K G+ +
Sbjct: 259 LEVAAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGV---KRDRM 315
Query: 137 GVRVIEILN 145
++V ++L
Sbjct: 316 ALQVTDVLG 324
>gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
Length = 309
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
+++ + +P+ + +G + + L L G ++ LD + V I N + + GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288
Query: 126 ITIMEEDDTHFGVRVIEILN 145
+ +++ GVRV +
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305
>gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia sp. Ejp617]
Length = 338
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ D D ++E + + E+ + ++P+ +++ G + + L L
Sbjct: 232 ESTALNSADDDALTEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
G V+TLD + + IA+GE+ +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
Length = 331
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + LE+S + MNI + M +LGS + + + LS GDV+TLD V +
Sbjct: 237 ENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKM 296
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ ++ G+ I+ ++ GV++++I++
Sbjct: 297 MVGDKPYLLGKPGIIGKNR---GVQILDIIDK 325
>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
Length = 80
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 1 MATLDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60
>gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1]
gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1]
Length = 441
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
EM ++ D+ S ++ + + + D + V ++ L M + LV L
Sbjct: 337 EMPLEPPRTDSAS---AAAPDTPPADAPRSLDGLA---VDLRFELPPTSMPLGELVTLQP 390
Query: 99 GDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
G VI L + +SV + N I G++ + + GVRV+ +
Sbjct: 391 GAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTPP 436
>gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
Length = 339
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++
Sbjct: 272 IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330
Query: 135 HFGVRVI 141
VRV
Sbjct: 331 --AVRVT 335
>gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
Length = 339
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++
Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330
Query: 135 HFGVRVI 141
VRV
Sbjct: 331 --AVRVT 335
>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
Length = 80
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
I N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 1 MATIDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60
>gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci 6BC]
gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila
psittaci RD1]
gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci 6BC]
gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC]
Length = 371
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + +NLS+G ++ L+ VD+ +N K+ +GEI + +
Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 364 -LGIRVLEV 371
>gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
Length = 400
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D+ + +P+ +Q+ LG + +S L L + V+ L +++ IT ++ +GE+ +
Sbjct: 326 DVAVELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSV 385
Query: 130 EEDDTHFGVRVI 141
+ GVR++
Sbjct: 386 D---GRLGVRIV 394
>gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci]
Length = 371
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + +NLS+G ++ L+ VD+ +N K+ +GEI + +
Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 364 -LGIRVLEV 371
>gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 329
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 60 NILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ EK + + +I + IP+K ++G + + +L+N +KGD++ ++K+ + ++
Sbjct: 236 SNAEKQSCDIGIIKDKISNTYIPLK--AVIGMSKITVRDLLNFNKGDILEINKKYKDPIE 293
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I IN++ G + + + V++ EI +
Sbjct: 294 IKINDETKFLG---VPGIKNKKYCVQITEICSE 323
>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
Length = 332
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 54 ISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ + E+S D I + ++ +LG + + + LS GDV+ LD ++ + +
Sbjct: 236 FQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDVLILDNQIDKPI 295
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I + NQ A G+ ++++ + G+++++IL+
Sbjct: 296 SINVENQLYAYGKPGVVDK---NMGIQILDILDK 326
>gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
Length = 330
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+ +Q LG + I+ + L +GDVI LD+ + E + +T+ +K + +
Sbjct: 258 PLLIQSELGRSEITINEFLQLGEGDVIELDQLINEPLLVTVEGEKKFYAQ---PGKMKNK 314
Query: 136 FGVRVIEILNA 146
V+V +++
Sbjct: 315 MAVQVTDVIEE 325
>gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 329
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
+ + V++ + L C + + L NL G ++ L K E SVDI ++A+G +
Sbjct: 254 LEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVARGSLV--- 310
Query: 131 EDDTHFGVRV 140
E + GVR+
Sbjct: 311 EINGLLGVRI 320
>gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
5159]
gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
5159]
Length = 334
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+ P + S ++ + + +++++ LG + + L+ L GDV+ LD+ V
Sbjct: 221 FANPRRATSPQVIADLMAQLE---EVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVS 277
Query: 110 ESVDITINN 118
+ + + N
Sbjct: 278 FPLAVYVEN 286
>gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis
434/Bu]
gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 373
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + + + L G V+ D VDI +N K+ +G I +++
Sbjct: 310 KIVAEVARYSLSVGEFLKLGPGSVLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV-- 365
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 366 -LGIRVLEV 373
>gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor
owensensis OL]
gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor
owensensis OL]
Length = 329
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
++ S ++ L+K + V ++ +LG + + + L GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
R + +++ + N+ G + + +++ + +
Sbjct: 289 RKNQEIEVYVGNKLKFYG---VPGRKEGRVAIKITRVEEGE 326
>gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163]
Length = 341
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ D D ++E + + E+ + ++P+ +++ G + + L L
Sbjct: 235 ESTALNSADDDALNEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 289
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
G V+TLD + + IA+GE+ +E
Sbjct: 290 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 322
>gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella
chejuensis KCTC 2396]
gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella
chejuensis KCTC 2396]
Length = 397
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ + + ++PV++ + ++ + +L+ G I LDK + +V +
Sbjct: 283 QPMTHTTTPNNDAPLQPLHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTL 342
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
+ +Q IA+ E+ + + G R+
Sbjct: 343 LVQSQAIAEAELVQVGD---QIGARIT 366
>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 80
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I +NN IA G + +
Sbjct: 7 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60
>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
Length = 304
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
VDN+ P + ++ ++ +PV ++ +L + ++ L NL G V L +
Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V +++ I +N Q + GE+ +E++ V +
Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE--RLAVEIT 293
>gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276]
gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s]
gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis
D/UW-3/CX]
gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768]
gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074]
gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301]
gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC]
gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC]
Length = 373
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
L + D EP L +T + + + + + L G
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332
Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+ D VDI +N K+ +G I +++ G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373
>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
Length = 332
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++
Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E ++ I+ + + + + + + +++ L +
Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329
>gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222]
Length = 373
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
L + D EP L +T + + + + + L G
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332
Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+ D VDI +N K+ +G I +++ G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373
>gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70]
gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s]
gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13]
gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis
B/Jali20/OT]
gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis
Sweden2]
gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150]
gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023]
Length = 373
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
L + D EP L +T + + + + + L G
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332
Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V+ D VDI +N K+ +G I +++ G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373
>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
Length = 332
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++
Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E ++ I+ + + + + + + +++ L +
Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329
>gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3]
gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila
abortus S26/3]
Length = 371
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + ++LS+G ++ L+ VD+ +N K+ +GEI + +
Sbjct: 308 KLVAEASRYSLTVEEFLHLSQGSILNLNGI--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 364 -LGIRVLEV 371
>gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ubonensis Bu]
Length = 211
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P + + ++ D + V ++ L S M + L L G VI L
Sbjct: 111 EPTRTDTPPTLSPDAPPHEAPRTLDALA---VDLRFELPSTSMPLGELAVLQPGAVIELQ 167
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G + + + GVRV+ +
Sbjct: 168 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 206
>gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 329
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
++ S ++ L+K + V ++ +LG + + + L GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
R + +++ + N+ G + + V++ + +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326
>gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor
lactoaceticus 6A]
Length = 329
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
++ S ++ L+K + V ++ +LG + + + L GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
R + +++ + N+ G + + V++ + +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326
>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
Length = 336
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++
Sbjct: 244 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 297
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E ++ I+ + + + + + + +++ L +
Sbjct: 298 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 333
>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 518
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+E +++ +EPI + +T+ +I +IP+ +++I G+ +++++
Sbjct: 409 QEEVQAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLAD 468
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ + D++ L + + + + N I G + + + HFG+++ E+
Sbjct: 469 FITWCEKDIVILKESYEQPLSLLANGIHIGSGTLVRVND---HFGIKITEL 516
>gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
Length = 332
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 54 ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ ILE+S +NI + + +LG+ + + + + L GDV+TL+ + +
Sbjct: 236 QDTNDEAILEESRVKLRQRLNIVNMNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPI 295
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + ++ G+ ++ + + GV++++I++
Sbjct: 296 KLMVEDKPYCYGKPGVLGK---NMGVQILDIIDK 326
>gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
Length = 416
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV ++I L + +S L L G ++ L E V + + ++ +A+ E+ +E +
Sbjct: 349 LPVDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVG 408
>gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor
obsidiansis OB47]
gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor
obsidiansis OB47]
Length = 329
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
++ S ++ L+K + V ++ +LG + + + L GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
R + +++ + N+ G + + V++ + +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326
>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
Length = 311
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISN 92
+ + ++DNI E + + E +N ++ VK+ +LG + +
Sbjct: 195 QQEGAFVIEENIDNI-EEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEE 253
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
L ++ G V +L V + N Q +A+GE+ + +D+ G+ V
Sbjct: 254 LAHIQPGAVYSLGADKDREVKVYANKQLVAEGELVYIGDDEE-LGLEVT 301
>gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 275
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 176 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 234
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 235 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 266
>gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 322
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 322
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
Length = 71
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
LG + + L+ + +G VI LD R + V I NN +A+GEI I EE
Sbjct: 3 LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 52
>gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 244
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 145 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 203
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 204 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 235
>gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
Length = 333
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + I LGS + ++VNL GDVITLD+ + V+I + KG +
Sbjct: 258 LDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKG---YPGTYKGNQ 314
Query: 137 GVRVIEILNAQ 147
VR+ EI+ +
Sbjct: 315 AVRISEIVQDK 325
>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 80
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + +
Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60
>gi|169831882|ref|YP_001717864.1| MCP methylation inhibitor CheC [Candidatus Desulforudis audaxviator
MP104C]
gi|169638726|gb|ACA60232.1| CheC, inhibitor of MCP methylation [Candidatus Desulforudis
audaxviator MP104C]
Length = 369
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
E + + DLI+++P+K+ +ILG I +++ L+ G +I
Sbjct: 289 AGAGFSELALEKLDLILDLPLKVTVILGRSKRPIKDVLGLTPGSII 334
>gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor
hydrothermalis 108]
gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor
hydrothermalis 108]
Length = 329
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
++ S ++ L+K + V ++ +LG + + + L GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
R + +++ + N+ G + + V++ + +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326
>gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
DSM 6725]
gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
DSM 6725]
Length = 329
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++ +LG + + + L GDV+ LD+R + +++ + N+ G + +
Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315
Query: 137 GVRVIEILNAQ 147
V++ + +
Sbjct: 316 AVKITRVEEGE 326
>gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens]
Length = 367
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%)
Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62
+ +++ + + D D + S+ P + + + + + +
Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + FD ++P+ + I G + + L NL+ G V+ + + + + +A
Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE+ E D G+++ +
Sbjct: 346 HGELV---EVDGRLGLQIAHV 363
>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
Length = 99
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+SS + + + + + V + ++LG+C M I ++ LS+G +I LD + V
Sbjct: 3 MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ NN IA G + + D V V E+L
Sbjct: 63 VLANNLPIANGVVLV---DRNRIAVEVKEML 90
>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
Length = 78
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG + +L+++ KG V L+ G V ITI+ + I GEI D
Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILT---KDG 63
Query: 135 HFGVRVIEI 143
V++ ++
Sbjct: 64 KMFVKITKL 72
>gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor
kronotskyensis 2002]
Length = 329
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V ++ +LG + + + L GDV+ LD+R + +++ + N+ G + +
Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315
Query: 137 GVRVIEILNAQ 147
V++ + +
Sbjct: 316 AVKITRVEEGE 326
>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
CGA009]
gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris TIE-1]
gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
Length = 80
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + +
Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60
>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB5]
Length = 80
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + +
Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV 60
>gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae]
Length = 338
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 41/89 (46%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
++ +++ + ++ + S ++ + ++P+ +++ G + + L L G V
Sbjct: 231 LESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTLGELQRLQAGSV 290
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIME 130
+TLD + + IA+GE+ +E
Sbjct: 291 VTLDNVTPGEAGLYHGDTLIARGELVDVE 319
>gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 367
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%)
Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62
+ +++ + + D D + S+ P + + + + + +
Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + FD ++P+ + I G + + L NL+ G V+ + + + + +A
Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345
Query: 123 KGEITIMEEDDTHFGVRVIEI 143
GE+ E D G+++ +
Sbjct: 346 HGELV---EVDGRLGLQIAHV 363
>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris HaA2]
Length = 80
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
N+ V + ++LG+ M I ++ LS+G +I LD + V I NN +A G + +
Sbjct: 6 NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV 60
>gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158]
Length = 338
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ D D ++E + + + ++P+ +++ G + + L L
Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
G V+TLD + + IA+GE+ +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
>gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora]
gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
Length = 338
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
+ D D ++E + + + ++P+ +++ G + + L L
Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286
Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
G V+TLD + + IA+GE+ +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
hamburgensis X14]
Length = 87
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + +
Sbjct: 14 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67
>gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
Length = 381
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P ++ + + + + D + V ++ L + + L L G VI L
Sbjct: 281 EPTRTDTPSATTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G++ + + GVRV+ +
Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376
>gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia
alexandrii DFL-11]
gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia
alexandrii DFL-11]
Length = 88
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
I V + ++LG M + L+ + +G VI LD + V I NN +AKG++ ++ E
Sbjct: 7 INVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGE--- 63
Query: 135 HFGVRVIEIL 144
G+ + E+L
Sbjct: 64 RIGISITEVL 73
>gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 322
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ
gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 322
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
multivorans ATCC 17616]
gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
multivorans ATCC 17616]
Length = 443
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ PL+ T +P +D P + D V ++
Sbjct: 337 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 376
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141
L M + L L G VI L + + +SV + N I G + + + GVRV+
Sbjct: 377 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 433
Query: 142 EILNA 146
+
Sbjct: 434 TLTQP 438
>gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 335
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ + V + + LG + + +++ L +GDVI LD + + + + + N+ E
Sbjct: 254 LSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEA---GS 310
Query: 132 DDTHFGVRVIEILNAQ 147
+ H+ RV+E+L+++
Sbjct: 311 FNKHYAARVLEVLSSE 326
>gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10229]
gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10247]
gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei
2002721280]
gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10247]
gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei
2002721280]
gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC
10229]
Length = 335
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D + + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDAL--- 260
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + + L G V+ L GE V I N + +GE+ + E
Sbjct: 261 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 316
>gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_CA4C1]
Length = 164
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 34/62 (54%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V
Sbjct: 103 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 162
Query: 109 GE 110
+
Sbjct: 163 ND 164
>gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisA53]
Length = 82
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + +
Sbjct: 9 VSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLV 62
>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
Length = 329
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
LI + ++ +LG+ + +++ +NL+ GD+I LD++V E +D+ + N + A
Sbjct: 253 SLISKAQIPVKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTA----- 307
Query: 128 IMEEDDTHFGVRVIEILNAQ 147
+ D ++ VR+ +L +
Sbjct: 308 LPGSADDNYAVRITNVLRGE 327
>gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 322
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. TJI49]
Length = 134
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
+ D + P S + ++ D + V ++ L M + L L G V
Sbjct: 30 PTRTDTSHTGAPDVSGAAASTGDTSRPLDGLA---VDLRFELPPTSMPLGELSALQPGAV 86
Query: 102 ITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I L + + +SV + N I G++ + + GVRV+ +
Sbjct: 87 IELQQGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLAQP 129
>gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 69-1]
gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 69-1]
Length = 315
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+S E + ++PVK++ +LG M + + +L +I+L ++++I
Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis]
Length = 359
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + + ++EP + D ++ D IPV++ LG ++ L
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307
Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+L G L++ + + V + N + G + + D GV + +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354
>gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 216
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 117 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 175
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 176 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 207
>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 322
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 10 YIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
+I+ + + + I P+ +T + E I + EPI +
Sbjct: 179 FIRTEMNPQFVTIVTPVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADR 238
Query: 67 DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
D D+ I N PV+++ ILG + L++L GD++TL +R+ E VD+ +
Sbjct: 239 DEMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVE 298
Query: 118 NQKIAKGEITIMEEDDTHFGVRVI 141
KG++ ++ +++I
Sbjct: 299 GVPKFKGKL---GTFKGNYAIKII 319
>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
Length = 332
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++NI S+ E I + V +++ LG + + L+ L KGDVI L
Sbjct: 226 DKLNNILLFSSAGKAQNPEDQRTIRRKIERVRVPLKVFLGQTQITVRELLGLEKGDVIPL 285
Query: 105 DKRVGESVDITINN-QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + E +DI + +K A I V++ +LN +
Sbjct: 286 QQHIQEPLDIYVGKFKKFAG----IPGLHSNRLAVQISGVLNEE 325
>gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
Length = 359
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + + ++EP + D ++ D IPV++ LG ++ L
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307
Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+L G L++ + + V + N + G + + D GV + +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354
>gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47]
Length = 99
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + D +EP S+ EK ++ I + + L + ++ L G
Sbjct: 1 MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 53
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++T D + + IA GE + + FG+RV EI +
Sbjct: 54 MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 97
>gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
E58]
gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
E58]
Length = 371
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P + + +V P+ D + L+ + + +
Sbjct: 273 PKSGDFKITSYPNVQPEDAPLPEDHEAPAAPLPGHCKLV--------AEVARYGLAVDEF 324
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ L+ G ++ L VDI ++ K+ +GEI + + G+RV+E+
Sbjct: 325 LKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDV---LGIRVLEV 371
>gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 331
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++++PV +++ +G + + +++L +GD I L + + + + ++ + G + +
Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310
Query: 132 DDTHFGVRVI 141
+ + V+++
Sbjct: 311 RNRVYAVKIV 320
>gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius LAA1]
gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius LAA1]
Length = 331
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++++PV +++ +G + + +++L +GD I L + + + + ++ + G + +
Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310
Query: 132 DDTHFGVRVI 141
+ + V+++
Sbjct: 311 RNRVYAVKIV 320
>gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 322
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042]
Length = 315
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+S E + ++PVK++ +LG M + + +L +I+L ++++I
Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
vietnamiensis G4]
gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
vietnamiensis G4]
Length = 392
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P ++ + + + + D + V ++ L + + L L G VI L
Sbjct: 292 EPTRTDTPPATAHDAPPDDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 348
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G + + + GVRV+ +
Sbjct: 349 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 387
>gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 310
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++ V + +G + + L +L G ++ L +V I +N + + G + +
Sbjct: 236 LNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLV---D 292
Query: 132 DDTHFGVRV 140
+ GVRV
Sbjct: 293 IEGRLGVRV 301
>gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 322
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313
>gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia AU 1054]
gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia HI2424]
gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia AU 1054]
gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia HI2424]
gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
Length = 384
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + + + P + D+ + D + V ++ L M + L L G
Sbjct: 281 MPLEPTRTDSAPPTTHDAPPA--DVPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 335
Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI L + + +SV + N I G + + + GVRV+ +
Sbjct: 336 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 379
>gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I]
gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 359
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
++ + + ++EP + D ++ D IPV++ LG ++ L
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQADATLDT-DQIPVRLTFDLGEREFTLAQLR 307
Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+L G L++ + + V + N + G + + D GV + +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354
>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
Length = 318
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
P++SD+ + E D + N+ +K++ LGS + ++ L +++G L +
Sbjct: 220 TPMTSDTQHTPEPLDAPSD-LGNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAP 278
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V + +N Q +A+ E+ ++ VR+
Sbjct: 279 VAMKVNGQTLARCELVEIDGRLGARVVRLT 308
>gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
Length = 133
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 3/129 (2%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
+ + + P E + + P ++ + + I
Sbjct: 2 STEHLSQESLQEMAEMDADALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSI 61
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++P+++ + G + + L L G V+ + + + + +GE+ +
Sbjct: 62 AHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELV---DV 118
Query: 133 DTHFGVRVI 141
D G+++
Sbjct: 119 DGRLGLQIT 127
>gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia]
gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 366
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + + + P + D+ + + D + V ++ L M + L L G
Sbjct: 263 MPLEPTRTDSAPPTTHDAPP--GDAPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 317
Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI L + + +SV + N I G + + + GVRV+ +
Sbjct: 318 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 361
>gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
Length = 329
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ + +G + + +++NL GDVI LD + + I +N + G + +
Sbjct: 259 VELSVAVGETNLTLWDILNLEVGDVIRLDTFKEDPLKIKLNGKDKFLG---VPGVFKGKY 315
Query: 137 GVRVIEILNAQ 147
V+++E+L+ +
Sbjct: 316 AVKIVEVLDEE 326
>gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus
nasoniae]
Length = 292
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
D +Q+ + TN++ + + + + S + +NIL + D +IP+
Sbjct: 166 QQTYDVVIQNKVIGHFTNDNGVYMVNTNFYDESIDDTISEDNILIEPGDKIRSKDDIPIT 225
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
++ IL + + L N+ +G V+ D +V I N IAKG I +E+ GV
Sbjct: 226 LEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIED---RLGV 282
Query: 139 RVIEILNAQ 147
+ + + +
Sbjct: 283 EITHLFHNE 291
>gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC]
gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC]
Length = 371
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + + L++G V+ + VD+ +N K+ +GEI + +
Sbjct: 308 KLVAEASRYSLTVEEFLKLTQGSVLNFNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 364 -LGIRVLEV 371
>gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
Length = 364
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
D P+ + + S D +L PV +I + + ++ L L G VI L
Sbjct: 270 DRNDHPVPGAPDAETQTSLDELEL----PVSFEIE--TVTLPLAQLSALRPGYVIELRGT 323
Query: 108 VGES-VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ ++ + + Q I GE+ + E GVRVI++ +
Sbjct: 324 LRDARIRLLAYGQLIGIGELVTVGE---QLGVRVIDVFGS 360
>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
Length = 78
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
NIP+++ LG I++L+++ KG V L+ V V ITI+ + I GEI
Sbjct: 5 HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---K 61
Query: 133 DTHFGVRVIEI 143
D V++ ++
Sbjct: 62 DGKMFVKITKL 72
>gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 329
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
S+ + E++ + I V ++ ILG + + + L GDVI LD+R + +
Sbjct: 235 FSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREFLELQVGDVIRLDRRKNQEI 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
++ + ++ G + + ++V +
Sbjct: 295 EVFVGDKLKFYG---VPGRKEGRVAIKVTRV 322
>gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
Eklund]
gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
Eklund]
Length = 331
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132
+ + M ++LGS + + ++L GDVITLD V + + + +AK I
Sbjct: 257 VELPMSVVLGSTKLDVREFLSLCIGDVITLDALTSSPVKVMVEDEPYLLAKPGIV----- 311
Query: 133 DTHFGVRVIEILNA 146
+ GV++++I++
Sbjct: 312 GKNKGVQILDIIDK 325
>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
Length = 325
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+++N+ +S N + I IP++ +G +++ L +LS+G +I L V V I
Sbjct: 214 SETDNLANQSLTNLEEI-QIPIRF--EVGRQYIELQALTHLSEGSLIDLAVPVNGDVRII 270
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
N Q + G++ E G++V+E+ +
Sbjct: 271 ANQQPLGTGQLV---EIQGRLGIKVVELFAKK 299
>gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao
family. [Cupriavidus taiwanensis LMG 19424]
gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
family [Cupriavidus taiwanensis LMG 19424]
Length = 399
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EGR + + T+ + +N + M ++ D S+PI + + + +
Sbjct: 276 EGRRLLVQAGADSTDSTDVSNGAHM--EEQDPARQSQPI-----PHPDAAQPPLSRLDQL 328
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
V ++ +G + ++ L ++ G V L + + +S V I N +I G + +
Sbjct: 329 EVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAVG---N 385
Query: 135 HFGVRVI 141
GVR+
Sbjct: 386 RLGVRIT 392
>gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 21-1]
gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 21-1]
Length = 315
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I L ++++I +N
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia
multivorans ATCC 17616]
gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia
multivorans ATCC 17616]
Length = 385
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
+ PL+ T +P +D P + D V ++
Sbjct: 279 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 318
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141
L M + L L G VI L + + +SV + N I G + + + GVRV+
Sbjct: 319 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 375
Query: 142 EILNA 146
+
Sbjct: 376 TLTQP 380
>gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
Length = 331
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 48 DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D + E + D I + + I++ P+++ + LG+ + + L++L GD I LDK
Sbjct: 226 DKLKEGMQFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDK 285
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + + +G I + +++ +I++ +
Sbjct: 286 PCTSELLVKVEGVPKYQG---IPGIRHGNKAMQISDIISTK 323
>gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
Length = 335
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D + + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDTSHDEPTAAHAPPAFDIDAL--- 260
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N + GE+ + E
Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGEQ 316
>gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
Length = 381
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P + + + + + D + V ++ L + + L L G VI L
Sbjct: 281 EPTRTDTPSVTTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G++ + + GVRV+ +
Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376
>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 83
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ L+ ++ V++++ L + L+N+ +GD+I L+K + + + + + N A G
Sbjct: 3 TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
E+T + E +G+R+++++
Sbjct: 63 EMTNINE---KYGIRIVDLIKE 81
>gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B354]
gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B354]
Length = 315
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli
UMN026]
gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli
FVEC1302]
gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli TA280]
gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026]
gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli
FVEC1302]
gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli TA280]
Length = 315
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira
defluvii]
gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira
defluvii]
Length = 323
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D + V + + LG+ + + +L+N + GDV+ LD+ G+ + + +G+
Sbjct: 251 DSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQHPGDPMLCLVEGDPKFQGQ---P 307
Query: 130 EEDDTHFGVRVIEILN 145
+ RV +IL
Sbjct: 308 GIFKGNHACRVTKILG 323
>gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 196-1]
gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 196-1]
Length = 315
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
Length = 315
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 SESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli TW10509]
Length = 315
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp.
4_1_40B]
Length = 315
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
Length = 327
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI-NNQKIAKGEITI 128
LI + M+ +LG + + + VNL GD+I LD++V + +++ + N +K A +
Sbjct: 251 SLIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFA----AL 306
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ + +R+ E++ +
Sbjct: 307 PGYSEDKYAIRITEVIKEE 325
>gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 116-1]
gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 175-1]
gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 146-1]
gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli
H736]
gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli H736]
gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 175-1]
gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 116-1]
gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 146-1]
gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli H736]
Length = 315
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli
ATCC 8739]
gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia
coli ATCC 8739]
gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli E482]
Length = 315
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora
CFBP1430]
gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora
CFBP1430]
Length = 307
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+D + + + ++P++++ +L S + ++ L + G + L+ + V I
Sbjct: 209 TDGYDECRDEDETLNRWSDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIY 268
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
+N + A+GE+ ++ + + V + ++
Sbjct: 269 LNRKFFARGELVALD--NGNLAVEIKQV 294
>gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS]
gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS]
Length = 315
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli M863]
gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli STEC_7v]
Length = 315
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli 53638]
gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli 53638]
Length = 315
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
Length = 299
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+I E + +PV + +L + ++ L L +G V+ L + +I N
Sbjct: 210 QDIQETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANG 269
Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142
I GE+ + D GV + E
Sbjct: 270 ALIGYGELV---QLDNSLGVEITE 290
>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
[Chlamydophila pneumoniae LPCoLN]
Length = 371
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + + + +S + L+ G +++L VDI ++ K+ +GEI + + G
Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365
Query: 138 VRVIEI 143
+RV+E+
Sbjct: 366 IRVLEV 371
>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
CWL029]
gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
pneumoniae]
gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
J138]
gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
Length = 371
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
++ + + + +S + L+ G +++L VDI ++ K+ +GEI + + G
Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365
Query: 138 VRVIEI 143
+RV+E+
Sbjct: 366 IRVLEV 371
>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
Length = 332
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
PV++ ++G + + +L+ L GDV+ L +RV + +D+ +++Q K + ++ +
Sbjct: 259 PVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLG---RY 315
Query: 136 FGVRVIEIL 144
V+V ++
Sbjct: 316 LAVQVTSLV 324
>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
Length = 78
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
NIP+++ LG + +L+++ KG V L+ V ITI+ + I GEI
Sbjct: 5 HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---K 61
Query: 133 DTHFGVRVIEI 143
D V++ ++
Sbjct: 62 DGKMFVKITKL 72
>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
Length = 80
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + +
Sbjct: 7 VTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60
>gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
20745]
gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
20745]
Length = 302
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ + E+ + + + + +++ LG +++++L+ + GDVI LD ++
Sbjct: 207 FANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGDVIRLDTAADSAL 266
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
+ + ++ G+ + VR++E +
Sbjct: 267 PVLVEDRVRFLGQ---PGQIAGQLAVRIVERVT 296
>gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2M]
gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2]
gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2]
gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2M]
Length = 385
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + + + + + D + V ++ L M + L L G
Sbjct: 280 MPLEPTRTDTPPATGTAHDASPADAPRALDGLA---VDLRFELPPTSMPLGELSALQPGA 336
Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
VI L + + +SV + N I G + + + GVRV+ +
Sbjct: 337 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 380
>gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
Length = 308
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
+ +I++ E ++ FD + + +K+ +LG + ++ L
Sbjct: 194 QQEGQFMIEETIAPIADESALLQEETFSDEVVKPFD-VNAMTIKLTFVLGQTEITLNELA 252
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ G V ++ + V + N Q IA+GE+ + E D G+ +
Sbjct: 253 DIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGESDE-LGLEIT 298
>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
Length = 331
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ LE S + MN+ + M ++LGS + I + LS GDVITLD V +
Sbjct: 237 ENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKV 296
Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ N + + + GV++++I++
Sbjct: 297 VVGNEPYLLGR-----PGTIGKNRGVQILDIIDK 325
>gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLVGNGELVQMNDT---LGVEIHEWLSE 298
>gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 158
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L G+V+ +
Sbjct: 59 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGG 117
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 118 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 149
>gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein
[Burkholderia thailandensis E264]
gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein
[Burkholderia thailandensis E264]
gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis E264]
Length = 423
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
D+P D+ SP + + + + ++P + S + + + ++ + +
Sbjct: 296 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 354
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ L + + I+ L L G V+ L V + Q I G + + H GV
Sbjct: 355 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 411
Query: 139 RV 140
R+
Sbjct: 412 RI 413
>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
Length = 78
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG I++L+++ KG V L+ V V ITI+ + I GEI D
Sbjct: 7 IPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---KDG 63
Query: 135 HFGVRVIEI 143
V++ ++
Sbjct: 64 KMFVKITKL 72
>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 229
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
Q+ND + + + + E + L +PV + IL + + L + +G+VI
Sbjct: 126 QENDDGDDAGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVI 185
Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L+ + E ++I NN +IA+G++ ME + GV + ++ ++
Sbjct: 186 PLEPSIEERIEIRANNVRIARGKLLGME--NGALGVELTQLYQSK 228
>gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria IOP40-10]
gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria IOP40-10]
Length = 193
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P ++ + + + + D + V ++ L + + L L G VI L
Sbjct: 93 EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G++ + + GVRV+ +
Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188
>gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli
FVEC1412]
gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli
FVEC1412]
Length = 308
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 223 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 282
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 283 YGELVEVDD---KLGVEI 297
>gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia
rustigianii DSM 4541]
gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia
rustigianii DSM 4541]
Length = 309
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
EP +++ + ++ VK+ +LG + ++ L ++ G + ++ +
Sbjct: 210 DEPTNTEMEEAFVDEAARPFNVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKER 269
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
V + N Q A+GE+T + E + G+ + +++
Sbjct: 270 EVKVYANKQLFAEGELTYIGESEE-LGLEITRLVS 303
>gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia
phytofirmans PsJN]
gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia
phytofirmans PsJN]
Length = 327
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ--IILGSCCMQISNLVNLS 97
+L + I++P+ D+N E ++ +LI + ++G+ + + L+ L
Sbjct: 217 LLQPSGEYMVIAQPMIDDANQSAEMTS---ELIPASALTFSFDAVIGTLSLTLDELMRLR 273
Query: 98 KGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
G ++L + VG ++ + A+GE+ +++ GVR++++
Sbjct: 274 TGSTVSLQQPVGRHAIRLLCQGIPFARGELIDIDDA---LGVRIVDL 317
>gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 198-1]
gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 198-1]
Length = 239
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +LG M + + +L +I+L ++++I +N
Sbjct: 154 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 213
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 214 YGELVEVDD---KLGVEI 228
>gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 3502]
gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 19397]
gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
Hall]
gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
Loch Maree]
gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
Kyoto]
gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 3502]
gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 19397]
gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
Hall]
gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
Loch Maree]
gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
Kyoto]
gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402
065]
Length = 331
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+D +I + S+ + I + +++ LG + + + L+ GDV+ LD R E V
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVH 295
Query: 114 ITI 116
+ I
Sbjct: 296 LLI 298
>gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 84-1]
gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 124-1]
gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 84-1]
gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 124-1]
gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 85-1]
Length = 315
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 331
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDEPTAAHAPPAF-----DIDAL-- 256
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 257 -PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 312
>gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
aurantiaca DW4/3-1]
gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
aurantiaca DW4/3-1]
Length = 379
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV+++I L + +S L L G ++ L V E V + + ++ +A+ E+ + D
Sbjct: 312 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 368
Query: 135 HFGVRVIEIL 144
G R++ +L
Sbjct: 369 EIGARILSLL 378
>gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis
HTCC2601]
gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601]
Length = 313
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D++ + V M ++G + + +++ + G V+ L +V + V + ++IA+ E +
Sbjct: 229 DMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAE--VG 286
Query: 130 EEDDTHFGVRVIE 142
+ +++ E
Sbjct: 287 HRKNGRIALKLSE 299
>gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 140
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
V +I ++S S + T + + + IP ++ +G ++I L L GDV+ +
Sbjct: 41 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 99
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V I +N++ I +GE+ F VR+
Sbjct: 100 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 131
>gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
DSM 771]
gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
DSM 771]
Length = 334
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + + G + + + + L +GDV+TLD+R+ E VD+ + +
Sbjct: 261 ELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDEDVDLFLEEKL 305
>gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 193
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ P ++ + + + + D + V ++ L + + L L G VI L
Sbjct: 93 EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149
Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + +SV + N I G++ + + GVRV+ +
Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188
>gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
Length = 331
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 56 SDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+D + + +++ + ++ + V M + LG + + + + L GDV+ L+ + + V +
Sbjct: 237 TDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDVLVLNSQYSDPVRV 296
Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146
+ N+ IAK I + G+++++IL+
Sbjct: 297 FVENEECFIAKPGIV-----GKNMGIQLLDILDK 325
>gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae
DSM 12163]
Length = 308
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P++++ +L S ++ L + G L++ + V I +N + A+GE+ ++ +
Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284
Query: 134 THFGVRVIEI 143
+ V + +I
Sbjct: 285 GNLAVEIRQI 294
>gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
Length = 342
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV+++I L + +S L L G ++ L V E V + + ++ +A+ E+ + D
Sbjct: 275 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 331
Query: 135 HFGVRVIEIL 144
G R++ +L
Sbjct: 332 EIGARILSLL 341
>gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila]
Length = 308
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
N + + +PV++ +G + L L G +I L + V I N
Sbjct: 222 NAAPDDALDPSQLEGLPVQVTFEVGRQTLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGH 281
Query: 120 KIAKGEITIMEEDDTHFGVRV 140
+ G + E GVRV
Sbjct: 282 LLGNGRLV---EIQGRLGVRV 299
>gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
Rt17-B1]
gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
Rt17-B1]
Length = 329
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 59 NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ ++ +N L I + + +G + + ++ L GDVI L + E + I +N
Sbjct: 240 KEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEILTLEVGDVIRLREHYDEPIKIEVN 299
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ G+ + ++ V++ +++
Sbjct: 300 GKTKFLGK---PGQFKGNYAVKITKVIEE 325
>gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617]
Length = 308
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P++++ +L S ++ L + G L++ + V I +N + A+GE+ ++ +
Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284
Query: 134 THFGVRVIEI 143
+ V + +I
Sbjct: 285 GNLAVEIRQI 294
>gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
Length = 428
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418
>gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147]
Length = 104
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 51 SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
S SD ++ + N L+ +IP+ + ++G + L +++ GDV+ L +
Sbjct: 7 SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66
Query: 107 RVGESVDITINNQKIAKGEITIME 130
V I + I GE +
Sbjct: 67 NPHGQVSIEAHGVMIGYGEFVEIG 90
>gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 4b H7858]
gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23]
gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459]
gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818]
gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064]
gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28]
gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e]
gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 4b H7858]
gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23]
gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818]
gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes
L99]
gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378]
gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816]
gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220]
gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 78
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D
Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63
Query: 135 HFGVRVIEI 143
V++ ++
Sbjct: 64 KMFVKITKL 72
>gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
Length = 428
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418
>gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246]
Length = 283
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+S P++ + +E V+M +ILG + + ++ +L+ GDVI D++V
Sbjct: 195 GLSPPVTPAPKSEIESVVRAMS------VEMSVILGRADLTMRDVSDLTTGDVIVFDQKV 248
Query: 109 GESVDITINN 118
E +D ++
Sbjct: 249 TEPLDGLVSG 258
>gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b]
gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b]
Length = 435
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 335 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 394
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 395 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 425
>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
Length = 331
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + LE+S + MN+ + M+ +LGS + + + LS GDV+TLD V +
Sbjct: 237 ENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKM 296
Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146
+ NQ +AK + GV++++I++
Sbjct: 297 MVGNQPYLLAK-----PGTMGKNRGVQILDIIDK 325
>gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
Length = 78
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D
Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63
Query: 135 HFGVRVIEI 143
V++ ++
Sbjct: 64 KMFVKITKL 72
>gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei]
Length = 310
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300
>gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 299
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 208 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 267
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 268 NGVLLGNGELVQMNDT---LGVEIHEWLSE 294
>gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98]
Length = 359
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
Length = 327
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHD---EPTAAHAPPAF-----DIDAL--- 252
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308
>gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 309
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++ V+++ +L S ++ L + G ++ L++ + V I +N + A+GE+ +E
Sbjct: 227 DLSVEIEFVLDSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALE--S 284
Query: 134 THFGVRVIEI 143
+ V + +I
Sbjct: 285 GNLAVEINQI 294
>gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215]
gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei
K96243]
gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
Length = 310
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300
>gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis
protein [Burkholderia pseudomallei]
Length = 310
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300
>gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family
[Succinatimonas hippei YIT 12066]
gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family
[Succinatimonas hippei YIT 12066]
Length = 315
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
+ +P + +Q + ++ + S D E+ I ++ + + L S +
Sbjct: 208 EGLQAPAQYNAEQLQITLLSSLQKTDSGDDMADSEE----LTTIEDVELTINFSLESIKL 263
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+S++ L++G V+ L+ E++ + + + I G I + + +++ I
Sbjct: 264 PLSSIKELTEGSVLDLNNSALENIAVKLEGKTIGYGRIIEVGGKN---ALQITRI 315
>gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 333
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E+S + + V ++ L + + +NL +GDVI+L+K +D+ + +
Sbjct: 246 EESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKF 305
Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
KG+ V++ +I+
Sbjct: 306 KGK---PGSIKNKLAVQITQIV 324
>gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei NCTC 13177]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S ++ +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASADLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243]
Length = 383
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTH 135
V ++ L M + L L G VI L + +SV + N I G++ + +
Sbjct: 311 VDLRFELPPTSMPLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQ---K 367
Query: 136 FGVRVIEILNA 146
GVRV+ +
Sbjct: 368 LGVRVVTLTPP 378
>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
Length = 331
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 54 ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+IL +S + ++I V++ ILG+ + + +NL+ GDV+TL ++ V
Sbjct: 235 FQDSDEDILNESREKLRNRLDIVDVELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPV 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + ++ G+ ++++ + GV +++IL+
Sbjct: 295 KLMVEDKVYYYGKPGVIDK---NMGVEILDILDK 325
>gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14]
gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9]
gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894]
gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
Length = 359
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 112]
Length = 347
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 247 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 306
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 307 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 337
>gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO
gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg]
gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO
gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO
gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin]
gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis]
gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 303
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 337
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S + +TD I + + +Q + + + I L L G VI L V
Sbjct: 237 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 296
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 297 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 327
>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
4359]
gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
4359]
Length = 328
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+ +Q ++G + + ++NL +GDVI L+ + + I + + +G I +
Sbjct: 255 VPLTVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRG---IPGKYKG 311
Query: 135 HFGVRVI 141
+ V++
Sbjct: 312 KYAVKIT 318
>gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis
Bt4]
gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
Length = 320
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
E L + D+ P ++D+ + D + PV ++ +L + ++ L
Sbjct: 212 EPLAEHAIDDSHDSPATADAPPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLAGCHP 268
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
G V+ L GE V I N Q GE+ + +
Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301
>gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023]
Length = 78
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D
Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63
Query: 135 HFGVRVIEI 143
V++ ++
Sbjct: 64 KMFVKITKL 72
>gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum]
Length = 338
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123
P++++ +G + +++ GDV +LD+ V E V++ + + +A+
Sbjct: 258 PLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307
>gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss]
gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg]
Length = 373
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
K+ + + + + L G ++ + VDI +N K+ +G I +++
Sbjct: 310 KIVAEVARYTLSVGEFLKLEPGSILHFEGM--HPTLGVDIILNGAKVGRGNIIALQDV-- 365
Query: 135 HFGVRVIEI 143
G+RV+E+
Sbjct: 366 -LGIRVLEV 373
>gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis Bt4]
Length = 205
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
D+P D+ SP + + + + ++P + S + + + ++ + +
Sbjct: 78 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 136
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ L + + I+ L L G V+ L V + Q I G + + H GV
Sbjct: 137 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 193
Query: 139 RV 140
R+
Sbjct: 194 RI 195
>gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis TXDOH]
Length = 226
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
D+P D+ SP + + + + ++P + S + + + ++ + +
Sbjct: 99 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 157
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ L + + I+ L L G V+ L V + Q I G + + H GV
Sbjct: 158 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 214
Query: 139 RV 140
R+
Sbjct: 215 RI 216
>gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786]
Length = 104
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 51 SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
S SD ++ + N L+ +IP+ + ++G + L +++ GDV+ L +
Sbjct: 7 SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66
Query: 107 RVGESVDITINNQKIAKGEITIME 130
V I + I GE +
Sbjct: 67 NPHGQVSIEAHGVTIGYGEFVEIG 90
>gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 303
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
98-5489]
gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
98-5489]
Length = 352
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 34/64 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++++ ++ + L+ V + +LG + + ++ L GD++ LD+ ++V I
Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIIN 298
Query: 116 INNQ 119
++ +
Sbjct: 299 VDGR 302
>gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 303
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax
paradoxus EPS]
gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax
paradoxus EPS]
Length = 379
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
S + IQ++ + + ++ ++ D + + V ++ +G + + L
Sbjct: 268 AEGSRITIQQSLHSAMKQDPAAPIAAAESGASLPIDRLDALEVMLRFEVGDIELSLGELK 327
Query: 95 NLSKGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L G V L + + + I + + KG + + + GVRV E +
Sbjct: 328 ALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLVAVGD---RLGVRVSEFAPGE 378
>gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 324
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D + T+ + +PV +++ L + ++ + L G V+ L+ V + +
Sbjct: 237 DGEGFHVEETEMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRL 296
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ +A+GE+ + + GVR++ +
Sbjct: 297 GERAVARGELV---DVEGAVGVRILSL 320
>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
Length = 323
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
++N+ V +Q+ LG + + +L+NL GD + LD +V + +D+ I ++ G +
Sbjct: 252 VLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLG---VPGR 308
Query: 132 DDTHFGVRVIEIL 144
+ +++ E+L
Sbjct: 309 VGKNLAIKITEVL 321
>gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 359
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + S +TD I + + +Q + + + I L L G VI L V
Sbjct: 259 SMSEEVDQASAGFGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + + ++ Q + GE+ + E H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349
>gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae]
Length = 309
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
+L+ + + Q + + S + I E S++ I
Sbjct: 169 DLDDSEIALHAAPQADAFADLDDGSGEPASASAGAEIPEDAGSEAAPPATPLP--LADIG 226
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132
I V + I + + +++ L L G V+ L ++ V + + Q + G + ++ E
Sbjct: 227 GIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVVIGE- 285
Query: 133 DTHFGVRV 140
+ GVR+
Sbjct: 286 --NLGVRI 291
>gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila]
Length = 307
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 57 DSNNILEKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + + DN D + N+P+++ +G + +L L G +I L + V I
Sbjct: 216 ELTAMHNAADDNLDATQLDNLPIQVTFEVGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRI 275
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140
N ++ G + E GVRV
Sbjct: 276 ISNGHQLGSGRLV---EIQGRLGVRV 298
>gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus
asymbiotica]
Length = 309
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+SSDS N D + ++ + + +G + + L +L G ++ L V
Sbjct: 221 LSSDSPNSTSPVPD----LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVR 276
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV 140
I +N + + G + + GVRV
Sbjct: 277 ILVNQKCLGSGRLV---DIQGRLGVRV 300
>gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 261
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 170 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 229
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 230 NGVLLGNGELVQMNDT---LGVEIHEWLSE 256
>gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein
[Achromobacter xylosoxidans C54]
Length = 396
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
+ D + P+ Q + D+ ++ + D +PV++ LG
Sbjct: 278 VSDEDGVFPSGAGGAGAQGFEARP-PREAGEDAGADVDGLEPSVDF-GQVPVRLGFDLGE 335
Query: 86 CCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ + L L+ G+V LD+ V + V I N ++ GE+ +E + GVR+ +
Sbjct: 336 RLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVE---GNIGVRLKSL 391
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+PV+M+ +G+ + ++ L +L++GDV+ LD+
Sbjct: 202 LPVRMRAEVGASTLSLAELRSLAEGDVVFLDEH 234
>gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
Length = 331
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDEPTAAHAPPAF-----DIDAL-- 256
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + + L G V+ L GE V I N + +GE+ + E
Sbjct: 257 -PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 312
>gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
Length = 323
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N + +GE+ + E
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 304
>gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
Langeland]
gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
Okra]
gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
Langeland]
gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
Okra]
gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
230613]
Length = 331
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+D +I + S+ + I + +++ LG + + + L+ GDV+ L+ + E V
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVH 295
Query: 114 ITI 116
+ I
Sbjct: 296 LLI 298
>gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO
gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III
secretion and virulence) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi]
gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L V +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
Length = 331
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
S + LE + + + V + ++LG + +S L++L GDVI LD R
Sbjct: 234 FSNAAKERTTEQLEALRNRLERAL---VPITVLLGRTTLSVSELLDLQLGDVIQLDNRAD 290
Query: 110 ESVDITINNQK--IAKGEITIMEEDDTHFGVRVI 141
+++ I + +A+ + G+++
Sbjct: 291 SELEVLIGQRVKYLAR-----PGLSGSKLGIQIT 319
>gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter
youngae ATCC 29220]
gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter
youngae ATCC 29220]
Length = 250
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
I + + + +S + + ++ + + +G + + L +L GDV+T D + V
Sbjct: 160 EIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCV 219
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRV 140
+ N A G + ++ + VR+
Sbjct: 220 KLRANGSVFASGNLLMLGDTP---AVRI 244
>gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
2916]
gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
2916]
Length = 331
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+D +I + S+ + I + +++ LG + + + L+ GDV+ L+ R E V
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVH 295
Query: 114 ITI 116
+ I
Sbjct: 296 LLI 298
>gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter
chlorophenolicus A6]
gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter
chlorophenolicus A6]
Length = 298
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ +PV + + L + + ++ L+ GDV+ L D+T+N ++A
Sbjct: 225 VAQVPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLA 275
>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
Length = 348
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ + I V+++ ++G +++S ++ L GDVI L++RV + V + I ++ + I
Sbjct: 259 EQLEKIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IP 315
Query: 130 EEDDTHFGVRVIEIL 144
H +R++E++
Sbjct: 316 GRSGKHRALRILEVV 330
>gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
Length = 327
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 252
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308
>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
Length = 315
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E S + IP+ +++ILG +Q+ +L+N+ GD + L K + E V++ ++ A
Sbjct: 237 EVSNKLLQALEEIPLNLEVILGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKA 296
>gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile
QCD-66c26]
gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP
107932]
gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile
QCD-76w55]
gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile
QCD-97b34]
gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile
QCD-37x79]
gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile
QCD-32g58]
gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
Length = 293
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252
Query: 105 DKRVGESVDITINN 118
+K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266
>gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei
9]
Length = 294
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 171 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 219
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 220 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 275
>gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
Length = 389
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
++ ++ ++E SM P DT ++ P +++ L + DN++E +
Sbjct: 253 LAPYTFTVTDMETVSM----PATDTMLADPHSDASALEFTPESDNVTENLPP-------- 300
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQKIAK 123
+PV + I GS M ++ L +L+ G V+TL D G+++ + + +A
Sbjct: 301 ----------LPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAL-LYHGDIALAS 349
Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
G++ + G+++ + +A
Sbjct: 350 GDLV---DVKGRLGLQITQCFSA 369
>gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus
Koribacter versatilis Ellin345]
gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus
Koribacter versatilis Ellin345]
Length = 109
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S + + ++ + ++ + + L + ++ L G V+ + +
Sbjct: 23 ESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPL 82
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+N +A E +++ +GVR+ E+
Sbjct: 83 RVNGALLAWSEFEVVD---NRYGVRLTEL 108
>gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 14]
Length = 213
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD---NISEPISSDSNNILEKSTD-NFDL 71
EG ++ ++ PL D+ + + + S D + S S D + D
Sbjct: 78 EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDA 137
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 138 L---PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193
Query: 132 D 132
Sbjct: 194 Q 194
>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 332
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 SDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+D ++ +S + + I + V + LG + + + + L+ GDVI LD R + +
Sbjct: 237 NDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKV 296
Query: 115 TINN 118
+ N
Sbjct: 297 YVGN 300
>gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 324
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV +++ L + ++ + L G V+ L+ V + + + IA+GE+ + +
Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAIARGELV---DVE 310
Query: 134 THFGVRVIEI 143
GVR++ +
Sbjct: 311 GAVGVRILSL 320
>gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
657]
gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
657]
Length = 331
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+D +I + S+ + I + +++ LG + + + L+ GDV++L+ R E V
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVH 295
Query: 114 ITI 116
+ I
Sbjct: 296 LLI 298
>gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 373
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-----------ISEPISSDSNNILEKS 65
G +MHI L + + + D+D+ P + S L +
Sbjct: 223 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGSAEPAPASAAAEIPEDAGSEAALPAT 282
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124
I +I V + I + + +++ L L G V+ L ++ V + + Q + G
Sbjct: 283 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 342
Query: 125 EITIMEEDDTHFGVRV 140
+ ++ E GVR+
Sbjct: 343 RLVVIGES---LGVRI 355
>gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile
QCD-63q42]
Length = 293
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI
Sbjct: 193 ESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252
Query: 105 DKRVGESVDITINN 118
+K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266
>gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1001]
gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1001]
Length = 454
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98
L ++ + + +P+ D ++ ++ D+ +++PV+ + + + +S L L
Sbjct: 346 SLTKEPIMTDELDPVRPDDLLAPDQQSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 403
Query: 99 GDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVRV 140
G V+ L V E+ + + + Q I GE+ + + H G+R+
Sbjct: 404 GYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD---HLGIRI 443
>gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis]
Length = 303
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
Length = 331
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
N S+P++ L+K + V + LGS C+ + + + L GDVI LD
Sbjct: 235 FSNSSKPVTERDKKALQKRVEKSA------VDITAQLGSTCVTVKDFLELQMGDVIMLDN 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + + I + ++ +G + V+V I
Sbjct: 289 PVDKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322
>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
Length = 329
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ N + S + +MN V++ +LG + +L++L GD + LD+ E +
Sbjct: 236 QEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPL 295
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + K+ KG++ + V+V+ + +
Sbjct: 296 SVMVGENKVFKGQVGV---SGKRMAVQVLHRVKEE 327
>gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC
43255]
Length = 293
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252
Query: 105 DKRVGESVDITINN 118
+K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266
>gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
15579]
gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
15579]
Length = 331
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ +++ LG + + + + LS GDV+ LD + E V + I
Sbjct: 257 VSMELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLI 298
>gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630]
gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile]
Length = 293
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252
Query: 105 DKRVGESVDITINN 118
+K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266
>gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides KD131]
gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor
[Rhodobacter sphaeroides KD131]
Length = 51
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
++ LD+RV + V++ + ++ I +GE+T +E E VR+ E+ N +
Sbjct: 1 MLPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVANLR 48
>gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli]
Length = 315
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + L +I+L ++++I
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIEIR 282
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304
>gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 319
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + +D + + + + D + PV ++ +L + ++ L G
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ L GE V I N + +GE+ + E
Sbjct: 270 VLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 300
>gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II
'5-way CG']
Length = 338
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123
P++++ +G + +++ GDV +LD+ V E V++ + + +A+
Sbjct: 258 PLEIEAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307
>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
Length = 331
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
NIS+P++ L+K + V + LG C+ + + + L GDVI LD
Sbjct: 235 FSNISKPVTESDKKALQKRVEKST------VNITAQLGGTCVTVKDFLELQIGDVIMLDN 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + + I + ++ +G + V+V I
Sbjct: 289 PVNKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322
>gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus
WK1]
gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus
WK1]
Length = 335
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIM 129
+ V M LG+ + I + LS GDVI LD+ V + + I + + + I +
Sbjct: 258 LKQTKVPMIAELGTSTISIQEFLQLSVGDVIQLDQTVRDPLVIKVGDVPKFIGQ-----P 312
Query: 130 EEDDTHFGVRVIEILNAQ 147
+ + +++++++ +
Sbjct: 313 GKMNKRLAIQILDVIKGE 330
>gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
citrulli AAC00-1]
gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
citrulli AAC00-1]
gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli]
Length = 352
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
+L+ + + Q + P + + + SD+ E + I
Sbjct: 213 DLDDSEIALHAAPQADAFAEPADEDGAPDPAGAAEEAAPCSGSDAEP--EATPLPLTDIG 270
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132
I V + I + + +++ L L G ++ L ++ V + + Q + G + ++ +
Sbjct: 271 GIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVVIGD- 329
Query: 133 DTHFGVRV 140
H GVR+
Sbjct: 330 --HLGVRI 335
>gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 EDL933]
gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. Sakai]
gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. EC4024]
gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
str. TW14588]
gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. TW14359]
gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK966]
gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str.
EDL933]
gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str.
Sakai]
gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
str. TW14588]
gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
TW14359]
gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. EC1212]
gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. 1044]
Length = 328
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 31 VSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
++ + D + + + S+S E + +PVK++ +LG M
Sbjct: 210 YPEELKMADHFQYEEDFETDDFDIKKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMN 269
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + L +I+L ++++I +N GE+ +++ GV +
Sbjct: 270 LYEIDELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDD---KLGVEI 317
>gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
23344]
gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia mallei GB8 horse 4]
gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
10399]
gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
23344]
gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
10399]
gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia mallei GB8 horse 4]
Length = 327
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S D EP ++ + + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHD---EPTAAHAPPAF-----DIDAL--- 252
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + + L G V+ L GE V I N + +GE+ + E
Sbjct: 253 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 308
>gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia
coli RN587/1]
Length = 39
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I IN IA+GE+ ++ + +GVR+ +I+
Sbjct: 1 ILINGYLIAQGEVVVVAD---KYGVRITDIITP 30
>gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
Length = 309
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 51 SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
++ S + + + + + ++PV + + + ++VNL+ GDV+ L
Sbjct: 214 ADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDVVNLTVGDVLPLSHPSS 273
Query: 110 ESVDITINNQKIAKG-----------EITIMEEDDT 134
E +D+ ++ +A+ ++ +EE+
Sbjct: 274 EPLDVVVDGIVLARAAAGSHGSRLACQVVTVEENPA 309
>gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. K]
gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. K]
Length = 324
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+PV +++ L + ++ + L G V+ L+ V + + + +A+GE+ + +
Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGELV---DVE 310
Query: 134 THFGVRVIEI 143
GVR++ +
Sbjct: 311 GAVGVRILSL 320
>gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
8052]
gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
8052]
Length = 332
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
+ L+ + N +E ++S LEK + D V++ LG+ + + + + L+
Sbjct: 227 DKLVVQYAFKNDNEASMAESREKLEKGINKVD------VEIVAELGTANITVDDFLKLTV 280
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
GDVI LD + + + + N++ + ++ ++ GV +++I + +
Sbjct: 281 GDVIKLDNKSSSPIKVYVGNEECYYAKPGVVGKNA---GVMILDITDKE 326
>gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
Length = 331
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + + +++ LG + + +NL+ GDVI L+K + + DI I ++
Sbjct: 252 EKVYDTKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKL 302
>gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava]
Length = 354
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+D+I E S+ + E + ++ ++ + + + G+ + + L +L+ G V+T +
Sbjct: 256 HLDDIDEHDSAHEADSAEANDNDLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315
Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
G ++ + + +A GE+ + + G+++
Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348
>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 405
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
VS P +++++ + D + + DS+N+ E +P+ + I GS M
Sbjct: 278 ETVSMPATATDIMLADPNSDTSAFEFTLDSDNVTESLPP-------LPITLHIRCGSLTM 330
Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
++ L +L+ G V+TL D G++ + + +A G++ + + G+++ +
Sbjct: 331 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQ 381
>gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM
gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis]
gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus
subtilis subsp. subtilis str. 168]
gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto
BEST195]
gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus
subtilis subsp. spizizenii str. W23]
gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
Length = 332
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ SD N + T + + IM + + LG+ + I ++L GD ITLDK V + +
Sbjct: 236 MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295
Query: 113 DITINNQK 120
+ + ++
Sbjct: 296 TVLVGDKP 303
>gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
Length = 328
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV +Q ++G +++ +++L GDVI L + + I + + +G I
Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGTFKG 311
Query: 135 HFGVRVI 141
+ V+V
Sbjct: 312 KYAVKVT 318
>gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51]
gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 338
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V M +LG + + +L+ L+ GDVI L + V E++ + + N + KG I H
Sbjct: 265 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 321
Query: 136 FGVRVIEILNA 146
V++ EI+
Sbjct: 322 LAVQITEIVEE 332
>gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 323
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304
>gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
Length = 323
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304
>gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
DCB-2]
gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
DCB-2]
Length = 331
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V M +LG + + +L+ L+ GDVI L + V E++ + + N + KG I H
Sbjct: 258 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 314
Query: 136 FGVRVIEILNA 146
V++ EI+
Sbjct: 315 LAVQITEIVEE 325
>gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
BNC1]
gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
BNC1]
Length = 354
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D I ++PV++ + + + + L L G + L+ + V I N +G + +
Sbjct: 275 DPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQI 334
Query: 130 EEDDTHFGVRVI 141
+ H GV++
Sbjct: 335 GD---HMGVQLS 343
>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
ferrodiazotrophum]
Length = 341
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+P+K+ LG+ ++S ++ GD+ITLD+ V + + IT+
Sbjct: 259 VPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKAL 304
>gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
Length = 344
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S D IM++PV+M
Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GD+I ++ E+ + + + +G++ + + ++
Sbjct: 260 KVNLLESQISLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKV---GQSNDKLAIQ 314
Query: 140 VIEILN 145
+ E +
Sbjct: 315 ITEKIK 320
>gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis
TXDOH]
Length = 320
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
E L + D+ P ++ + + D + PV ++ +L + ++ L
Sbjct: 212 EPLAEHAIDDSHDSPATAGAAPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLARCHP 268
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
G V+ L GE V I N Q GE+ + +
Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301
>gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia oklahomensis EO147]
Length = 144
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
+ ++ + + + + + + I+ L L G V+ L + V + Q I GE+ +
Sbjct: 68 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127
Query: 131 EDDTHFGVRVI 141
H GVR+
Sbjct: 128 ---AHLGVRIN 135
>gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP]
Length = 165
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 59 NNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
I E+ + + + + + I+G + + ++ L GDVI L + E + + +N
Sbjct: 74 KEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVN 133
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ G+ + ++ V++ E++
Sbjct: 134 GRTKFLGK---PGQYKGNYAVKITEVIEE 159
>gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas
mediterranea MMB-1]
gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas
mediterranea MMB-1]
Length = 142
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
+D PL+D+ +S N + +D + SEP S IL+K + P+++ +
Sbjct: 12 LDAPLEDSMTASADNIQHNVSDASDHQSESEPAPS---TILKKYP-------DAPLELTL 61
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
G L L+ G V+ + Q IA+GE+ +E G+++
Sbjct: 62 NAGRISASFDELSQLNIGSVLVATGEKAGYATMYHQQQAIARGELVNVE---GRLGIQIT 118
Query: 142 EI 143
+
Sbjct: 119 HV 120
>gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium
violaceum ATCC 12472]
gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 296
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ + + D + PV+++ +L + + L L + +V+ L V++ N
Sbjct: 209 AAAAETRPLADLDRL---PVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRAN 265
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIE 142
+ +GE+ + D GV V +
Sbjct: 266 GALLGRGELV---QLDGRLGVEVAQ 287
>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 342
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + + V + + +G + + +++ L GDVI L++ E V + + +
Sbjct: 252 IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVIKLEETYSEPVKVRVGERV 303
>gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. salamae serovar Sofia]
Length = 303
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae]
Length = 309
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-----------PISSDSNNILEKS 65
G +MHI L + + + D+D+ P + S L +
Sbjct: 159 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGGAGPAPASAAAEIPEDACSEAALPAT 218
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124
I +I V + I + + +++ L L G V+ L ++ V + + Q + G
Sbjct: 219 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 278
Query: 125 EITIMEEDDTHFGVRV 140
+ ++ E GVR+
Sbjct: 279 RLVVIGES---LGVRI 291
>gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica]
gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica]
Length = 303
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
Length = 325
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ ++ V++ +LGS +Q+ + + +GDVI LD+RV + + + + +
Sbjct: 251 LEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPM 300
>gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia oklahomensis C6786]
Length = 139
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
+ ++ + + + + + + I+ L L G V+ L + V + Q I GE+ +
Sbjct: 63 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122
Query: 131 EDDTHFGVRVI 141
H GVR+
Sbjct: 123 ---AHLGVRIN 130
>gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 322
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
+ +++ +++ E + + IL+ + + +P + +G ++I L L
Sbjct: 212 TEDNMMKFDELVQDIETLLAQEGPILKSDIASSVELEQLPQSVLFEIGRASVEIGQLRQL 271
Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
GDV+ + V I +N + I +GE+ F VR+
Sbjct: 272 KAGDVLPVGGCFAPEVTIRLNGRVIGQGELIA---CGNEFMVRIT 313
>gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
Length = 332
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ S+ N ++ T + IM + + LG M + +NL GD I LDK V +
Sbjct: 236 MQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDCIALDKPVNAPL 295
Query: 113 DITINNQK 120
+ + N+
Sbjct: 296 TVMVGNKP 303
>gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 223
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ N ++ + + +PVK++ +L + ++ L + + +++L V +V+I
Sbjct: 132 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 191
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 192 NGVLLGNGELVQMNDT---LGVEIHEWLSE 218
>gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8]
gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8]
Length = 328
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IPV +Q ++G +++ +++L GDVI L + + I + + +G I
Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311
Query: 135 HFGVRVI 141
+ V+V
Sbjct: 312 KYAVKVT 318
>gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli
E24377A]
gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 119-7]
gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 145-7]
gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli
E24377A]
gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 119-7]
gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 145-7]
Length = 190
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L +++ I
Sbjct: 98 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 157
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179
>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
Length = 320
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+S+ E + + + N+PV + + S ++ S+LV+L GDVI L R+ E +
Sbjct: 225 VSASERATREAARNAITAGLQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPL 284
Query: 113 DITINNQKIA 122
DI + A
Sbjct: 285 DIVAAGRTFA 294
>gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida
LFI1238]
gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein
FliM) [Aliivibrio salmonicida LFI1238]
Length = 343
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S D IM++PV+M
Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L++L GD+I ++ E+ + + + +G++ + V+
Sbjct: 260 KVNLLESEISLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKV---GKSGDKLAVQ 314
Query: 140 VIEILN 145
+ E +
Sbjct: 315 ITEKIK 320
>gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
786 str. D14]
Length = 333
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S + + E+ + + + + LG + + ++LS GDVI+L+K V E +
Sbjct: 236 VSQKKSRVPEEVEALRNRVNKAKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQ 295
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I + ++ G +++ V++ EI++
Sbjct: 296 IRVGDRLKYIGSPGTVKD---RLAVQIDEIVSE 325
>gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 319
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + +D + + + + D + PV ++ +L + ++ L G
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ L GE V I N Q +GE+ + E
Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300
>gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710b]
gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710b]
gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 319
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + +D + + + + D + PV ++ +L + ++ L G
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ L GE V I N Q +GE+ + E
Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300
>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
Length = 332
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ SD + T + + I+ + + LGS + I +NL GD ITLDK V E +
Sbjct: 236 MQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDCITLDKSVAEPL 295
Query: 113 DITINNQK 120
+ + ++
Sbjct: 296 TVLVGDKP 303
>gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 7894]
Length = 264
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 145 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 189
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 190 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 245
>gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila
RKU-10]
gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila
RKU-10]
Length = 328
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV +Q ++G +++ +++L GDVI L + + I + + +G I
Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311
Query: 135 HFGVRVI 141
+ V+V
Sbjct: 312 KYAVKVT 318
>gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR]
gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR]
Length = 333
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+ + +LG +++ L+ L GDVI LD R + + I + ++K G +
Sbjct: 260 KITLSAVLGETTIKLGELLELQPGDVIQLDNRTTDELKILVGDRKKFYGR---PGTVGSR 316
Query: 136 FGVRVIEILNA 146
V++ ++
Sbjct: 317 LAVQITRLVKE 327
>gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
BI429]
gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
BI429]
Length = 329
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ---KIAKGEITIMEEDD 133
V++ +G + + +++NL GDVI L+ + + I +N + A G
Sbjct: 259 VELSATIGETNLTLWDILNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPG------VFK 312
Query: 134 THFGVRVIEILNAQ 147
+ V+++E+ + +
Sbjct: 313 GKYAVKILEVFDEE 326
>gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
Length = 328
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV +Q ++G +++ +++L GDVI L + + I + + +G I
Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311
Query: 135 HFGVRVI 141
+ V+V
Sbjct: 312 KYAVKVT 318
>gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria]
Length = 308
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P + Q ++ + +D E + +P+++ +G + L
Sbjct: 204 PFAYCQPHQQHLELTAMHNAKPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+L G +I LD + V I N + G + E GVRV
Sbjct: 256 TSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRV 299
>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
1313]
Length = 328
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V ++ ILG +Q+++ + L GDVITLD V ++D+ + + +G +
Sbjct: 258 KVPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGV---KKNR 314
Query: 136 FGVRVIEILNAQ 147
+++ E++ +
Sbjct: 315 NAIKITEVIRRE 326
>gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147]
gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786]
Length = 431
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++SE + + D I + + +Q + + + I L L G VI L V
Sbjct: 331 SMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVIELPVAV 390
Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
++ + I ++ Q + GE+ + E H GVR+I
Sbjct: 391 ADARLRIVVHGQTVGFGELVAVGE---HLGVRII 421
>gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
Length = 330
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIP-VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ + ++ + P +++ ++ G + + + + L +GDV+ LDK+V + +
Sbjct: 235 FGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDL 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVI 141
D+ I K + V++
Sbjct: 295 DLYIGEHLKFK---VQAGALGSKLAVQIT 320
>gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
30120]
gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
30120]
Length = 309
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ + VK+ +LG + + L L G V ++ + V + N Q IA+GE+T + +
Sbjct: 231 LHGLTVKLTFVLGHSDITVGELDTLQPGTVYSIGENKEREVKVYANKQLIAEGELTYIGD 290
Query: 132 DDTHFGVRVIEILN 145
D G+ + +++
Sbjct: 291 SDE-LGLEIKRLVS 303
>gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
Length = 503
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
+ +I E + + ++ T +E++ + + + + + + + E
Sbjct: 382 MYQIFNPAAAKEMAQLTLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++ IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG
Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497
Query: 125 EITIME 130
+ ++
Sbjct: 498 ILVRVD 503
>gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
gladioli BSR3]
gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
gladioli BSR3]
Length = 474
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133
I + +Q + + + + L L G V+ L ++ + + ++ Q + GE+ + E
Sbjct: 400 IELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 457
Query: 134 THFGVRVI 141
H GVR+I
Sbjct: 458 -HLGVRII 464
>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 328
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 58 SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S E+S N I N + +++++G + + +L+ LS GDVI L++ + + +D
Sbjct: 236 STAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDVIPLNRNISQELD 295
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I I N+ G+ + ++V I+ +
Sbjct: 296 IVIGNRAKFLGKPGV---FANRMAIQVTGIVEEE 326
>gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans]
Length = 108
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S + + + L+ P+ +++ G + + L L G ++TLD +
Sbjct: 20 SEPLQSEDNPHIALL---PLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHG 76
Query: 118 NQKIAKGEITIME 130
+ IA+GE+ +E
Sbjct: 77 DTLIARGELVDVE 89
>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 308
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
P+ ++ +LG M++ + L GDVI LD RVG + + + N+ + + ++ E
Sbjct: 242 PLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNKLAFQAKPGVVGE---R 298
Query: 136 FGVRVI 141
V++
Sbjct: 299 MAVQIT 304
>gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis MSMB43]
Length = 187
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--- 69
D+L+ + D+P S ++ P S SN+ +
Sbjct: 49 DDLDEPIVAGDSPGDLRGDSRADLQADSQAHSRSDLWTDSPTDSPSNSPARDAPSAVPEP 108
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITI 128
+ ++ + + + + + + I+ L L G V+ L V + Q I G +
Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168
Query: 129 MEEDDTHFGVRV 140
+ H GVR+
Sbjct: 169 VG---AHLGVRI 177
>gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555]
gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016]
gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555]
gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 331
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
D + E + + + + + +LG+ + ++ +NL+ GDV+TL ++ + V
Sbjct: 236 QDGDEEVLAESREKLRERLNIVGIHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVK 295
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + ++ G+ I+ + + G+ +++I++
Sbjct: 296 LMLEDKIYYYGKPGIIGK---NMGIEILDIIDK 325
>gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica]
Length = 303
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
glumae BGR1]
gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
glumae BGR1]
Length = 445
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133
+ + +Q + + + + L +L G V+ L ++ + + ++ Q + GE+ + E
Sbjct: 371 VELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 428
Query: 134 THFGVRVI 141
H GVR+I
Sbjct: 429 -HLGVRII 435
>gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
graminis C4D1M]
gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
graminis C4D1M]
Length = 446
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98
L ++ + + +P+ D ++ ++ D+ +++PV+ + + + +S L L
Sbjct: 338 SLTKEPIMTDELDPVRPDDLLAPDQHSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 395
Query: 99 GDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
G V+ L + + + Q I GE+ + + H G+R+
Sbjct: 396 GYVLELPTPVADAQLKLVTHGQTIGYGELVTVGD---HLGIRI 435
>gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica]
Length = 303
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ + + +PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18]
gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18]
Length = 325
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ +M P+ + + +G + +++L+ L+ GDVI LD + + + + K
Sbjct: 249 EELMGAPMDISVEMGGATVSLADLLGLTPGDVIMLDSSGKDELSVKVGGTK 299
>gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 91]
Length = 233
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 114 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 158
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 159 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 214
>gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
HD100]
gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
HD100]
Length = 333
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 9 SYIKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
S+++ + + + I P D + + T ++I ++ I + + +
Sbjct: 186 SFVRTEVNPQFVGIVPPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVE 245
Query: 62 LEKSTDNF------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+++ + ++ +++++ LG +++ +L+NL GDVI LD+ D+
Sbjct: 246 TDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVA 305
Query: 116 INN 118
+
Sbjct: 306 VEG 308
>gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica]
Length = 303
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ + +PVK++ +L + +++L + + +++L +V+I
Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata]
Length = 110
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ SD N + T + + IM + + LG+ + I ++L GD ITLDK V + +
Sbjct: 14 MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 73
Query: 113 DITINNQK 120
+ + ++
Sbjct: 74 TVLVGDKP 81
>gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. Fw109-5]
gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. Fw109-5]
Length = 334
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVDITINNQKIAKGEITIMEE 131
+PV +++ L + ++ L L G + + LD+R V + + +A+GE+ +
Sbjct: 264 QLPVVLEVELARVEVTLAELARLEPGGILPLALDRRG--LVTLRAGERAVARGELV---D 318
Query: 132 DDTHFGVRVIEI 143
D GVR+I++
Sbjct: 319 VDGAVGVRIIDL 330
>gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora
ATCC BAA-2158]
Length = 308
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 54 ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ + N E + + +++ +PV ++ +L + +S L + G + ++ +
Sbjct: 203 VENQLENNHEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ I +N + A GE+ ME+ F V + ++
Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293
>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
1740]
gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
Length = 354
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++++ ++ + L+ V + +LG + + ++ L GD++ LD+ ++V +
Sbjct: 238 SETSSKKSRNRELQALLGGAAVNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVN 297
Query: 116 INN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + IA + V++ E++ +
Sbjct: 298 VDGREKYIA-----TIGLQRYRKTVKIKEVIKTE 326
>gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
Length = 332
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ S+ N + T + + IM + + LG+ + I ++L GD ITLDK V + +
Sbjct: 236 MQSERNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295
Query: 113 DITINNQK 120
+ + ++
Sbjct: 296 TVLVGDKP 303
>gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei NCTC 13177]
Length = 260
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + +D + + + + D + PV ++ +L + ++ L G
Sbjct: 154 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 210
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ L GE V I N Q +GE+ + E
Sbjct: 211 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 241
>gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica]
Length = 303
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ + +PVK++ +L + +++L + + +++L +V+I
Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
Length = 359
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
ILG + +++ +NL GDVI LD E +D+ I + I K + + + V++
Sbjct: 264 AILGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK---VNVGKSKGFYSVKI 320
Query: 141 IE 142
+E
Sbjct: 321 VE 322
>gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica]
gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica]
Length = 312
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D+ + + + + E FD + + VK+ +LG + + L ++ G V +L
Sbjct: 208 DDMQETEDTVPTLDEVLPEYLPSRFD-VAKLTVKLTFVLGHSEILLEELAHIQPGSVYSL 266
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + N Q +A+GE+ + + + G+ V ++
Sbjct: 267 GADKDREVKVYANKQLVAEGELIYIGDGEE-LGLEVTKL 304
>gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora
CFBP1430]
gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora
CFBP1430]
Length = 308
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 54 ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+ + N E + + +++ +PV ++ +L + +S L + G + ++ +
Sbjct: 203 VENQLENNNEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ I +N + A GE+ ME+ F V + ++
Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293
>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
Length = 332
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + LG + S+L+N++ GDV+ L +++ E + + ++N+ G++ + +
Sbjct: 260 LTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQV---GQVKKNM 316
Query: 137 GVRVIEILNA 146
V+++E +
Sbjct: 317 AVQILEKIKE 326
>gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 112]
Length = 215
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
+ + +D + + + + D + PV ++ +L + ++ L G
Sbjct: 109 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 165
Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ L GE V I N Q +GE+ + E
Sbjct: 166 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 196
>gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 386
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
VS P++ ++ + + + + S+N+ E +PV + + GS M
Sbjct: 253 ETVSMPSSATDTMFADPHSEASAFEFTQKSDNVTESLPP-------LPVTLHLRCGSLTM 305
Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
++ L +L+ G V+TL D G++ + + +A G++ + + G+++ +
Sbjct: 306 TLTELQHLASGSVLTLRDVVPGQA-WLYYGDIALASGDLV---DVEGRLGLQITQ 356
>gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601]
gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601]
Length = 82
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
IP+++ LG Q+ NL++L KG + L+ V I I I GEI D
Sbjct: 7 IPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILT---KDG 63
Query: 135 HFGVRVIEILNA 146
V+++++ +A
Sbjct: 64 KLFVKIVKLGDA 75
>gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 312
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
VK+ +LG + + L ++ G V +L V + N Q +A+GE+ + + +
Sbjct: 239 VKLTFVLGHSEILLEELAHIQPGSVYSLGADKDREVKVYANKQLVAEGELIYIGDGEE-L 297
Query: 137 GVRVIEI 143
G+ V ++
Sbjct: 298 GLEVTKL 304
>gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica]
gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica]
gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 303
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ + + +PVK++ +L + +++L + + +++L +V+I
Sbjct: 212 EEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRV 140
N + GE+ M + GV +
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEI 292
>gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
Eklund 17B]
gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
Eklund 17B]
Length = 331
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D I E + I + +++ LG+ + + + + L+KGD+I LD + + + +
Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+++ + + + + GV +++I++ +
Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326
>gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88]
Length = 81
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ ++PVK++ +LG M + + L +I+L ++++I +N GE+
Sbjct: 2 INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELVE 61
Query: 129 MEEDDTHFGVRV 140
+++ GV +
Sbjct: 62 VDD---KLGVEI 70
>gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 308
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P + Q ++ + S++ E + +P+++ +G + L
Sbjct: 204 PFAYCQPNQQHLELTAMHNAASAEPFGPTE--------LDQLPIQVSFEVGRQTLDWHTL 255
Query: 94 VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140
+L G +I L G +D I N + G + E GVRV
Sbjct: 256 TSLQPGALIDL----GTPLDGEVRIISNGHLLGVGRLV---EIQGRLGVRV 299
>gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
Length = 379
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 25/142 (17%)
Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
++ ++ ++E SM P DT ++ P +++ L DN++E +
Sbjct: 243 LAPYTFTVTDMETVSM----PATDTMLAVPHSDASALEHTPTSDNVTENLPP-------- 290
Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+PV + I GS M ++ L +L+ G V+TL V + + +A G
Sbjct: 291 ----------LPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340
Query: 125 EITIMEEDDTHFGVRVIEILNA 146
++ + + G+++ + +A
Sbjct: 341 DLV---DVEGRLGLQITQCFSA 359
>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
Length = 352
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 35/64 (54%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++++ ++ + L+ V + ILG + + +++L GD++ LD+ ++V I
Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIIN 298
Query: 116 INNQ 119
++ +
Sbjct: 299 VDGR 302
>gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli M718]
gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli M718]
Length = 315
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + +PVK++ +LG M + + L +I+L ++++I +N
Sbjct: 230 ENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIEIRVNGALTG 289
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304
>gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
33656]
gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
33656]
gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629]
Length = 326
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131
IPVK +LG + + + L GDVI LD V + +DI + N + A +
Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309
Query: 132 DDTHFGVRVIEILNAQ 147
+ VR+ ++ +
Sbjct: 310 SGDKYAVRITSVVREE 325
>gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 308
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 60 NILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
N E + +++++ +PV ++ +L + ++ L ++ G + L + + I +
Sbjct: 209 NNRETYREEEEVLLDWTKLPVDIEFVLDKYTVTLAELEEITPGVALPLKPAAEKKIKIYL 268
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
N + A GE+ +E+ F V + ++
Sbjct: 269 NRKLFACGELVALED--GSFAVEINQV 293
>gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica]
gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica]
Length = 303
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ D + ++PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
Alaska E43]
gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
Alaska E43]
gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 331
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
D I E + I + +++ LG+ + + + + L+KGD+I LD + + + +
Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+++ + + + + GV +++I++ +
Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326
>gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica]
gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica]
Length = 303
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ D + ++PVK++ +L + ++ L + + +++L +V+I
Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271
Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
N + GE+ M + GV + E L+
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298
>gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1003]
gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1003]
Length = 511
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEE 131
+++PV+ + + + +S L L G V+ L V E+ + + + Q I GE+ + +
Sbjct: 437 LDLPVQF--EVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD 494
Query: 132 DDTHFGVRV 140
H G+R+
Sbjct: 495 ---HLGIRI 500
>gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
Length = 328
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
SS +++ + I + +++ LG+ + I + + L GDVI L V +
Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDVIRLQTSVHNPLT 296
Query: 114 ITINN--QKIAK-GEITIMEEDDTHFGVRVIEILNAQ 147
I + + IA+ G++ F V++++ + +
Sbjct: 297 IYVGEQPKFIAQPGKV------SRKFAVQILDDVKRR 327
>gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
CD2]
gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
CD2]
Length = 329
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
S+ +S D +L I N V ++ +LG + +++ + L GDVI LD V ++
Sbjct: 235 FSNSEKEKTNESKDTIELKIENTKVPVRAVLGRSTILVNDFLELQPGDVIPLDSSVSGNL 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+I + + G ++V E++ +
Sbjct: 295 EILVGDLLKFYG---TPGVKKNRVAIKVNEVVRGE 326
>gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1]
Length = 326
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131
IPVK +LG + + + L GDVI LD V + +DI + N + A +
Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309
Query: 132 DDTHFGVRVIEILNAQ 147
+ VR+ ++ +
Sbjct: 310 SGDKYAVRITSVVREE 325
>gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium
sp. TrichSKD4]
gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium
sp. TrichSKD4]
Length = 348
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 22/116 (18%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG + ID LQ+ + + PT + ++N + + + I
Sbjct: 237 EGSELIIDGDLQEISANGPTEMTNKAGEENMGEGAAGKVDE------------------I 278
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIM 129
V + + G + I L L G V+ L VG+ V++ +N QKI +G + +
Sbjct: 279 KVNLVVSAGELQLPIGELRELETGSVLRL--PVGQPGNVNLMVNGQKIGEGVLVTI 332
>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
2522]
gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
2522]
Length = 332
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ P+ + + LG + I+ + L + DVI L++ + + + + + N+ + +
Sbjct: 254 LKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQ---PGK 310
Query: 132 DDTHFGVRVIEILNAQ 147
V++ + + +
Sbjct: 311 VKGKLAVQITDSIVKE 326
>gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
2075]
gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
2075]
Length = 328
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
V+ + LG + +L+ L GDV+ LD IN +A E
Sbjct: 257 EVEFTVELGRTELTSGDLLQLKVGDVLQLDSD--------INGHLVAMVEGV 300
>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
Length = 333
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + + LG + + +NL +GDVITL+K VGE ++I + N+ G
Sbjct: 259 LPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIG---SPGSIKDRV 315
Query: 137 GVRVIEILNA 146
V+V EI++
Sbjct: 316 AVQVDEIVSE 325
>gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
Length = 334
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEEDD 133
+ + LG+ + I + L GDVI LD+ + + + I + + + I + + +
Sbjct: 260 KLPIIAELGTATITIQEFLQLEVGDVIELDQSIQQPLLIKVGDIPKFIGQ-----PGKRN 314
Query: 134 THFGVRVIEILNAQ 147
V++++ +
Sbjct: 315 KRLAVQILDAFKGE 328
>gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica]
Length = 123
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SV 112
+ D ++ D IPV++ LG ++ L +L G L++ + + V
Sbjct: 32 RTPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPV 90
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ N + G + + D GV + +
Sbjct: 91 MVRANGLLLGSGRLV---DIDGRIGVVLQSV 118
>gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
AHT2]
gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
AHT2]
Length = 330
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ I N V+ ++ LG + ++NL GD +TLD+R E + + +
Sbjct: 253 ENIKNAEVEFKVELGRTTVPAREIINLQVGDTLTLDRRTDEQLPVFV 299
>gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
12260]
gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
12260]
Length = 334
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 65 STDNFDLIMN--------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
N + I + + V + + LG C + + +++ L DVI LD + + + + +
Sbjct: 239 GKKNLEGIRDMLSKRLHEVSVPLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRV 298
Query: 117 NNQK 120
N+
Sbjct: 299 GNRV 302
>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
Length = 54
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M+E +FG+ + EI
Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDE---NFGIVISEI 53
>gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 385
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
VS P + ++ + + + +S +N+ E +PV + + GS M
Sbjct: 258 ETVSMPPSATDTMFADPHSEVSALEFTSMRDNVTESLPP-------LPVTLHLRCGSLTM 310
Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ L +L+ G V+TL D G++ + + +A G++ + + G+++ + ++
Sbjct: 311 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQRFSS 365
>gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR]
gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR]
Length = 356
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +++ P + E + + D S+ +D + S D IM++PV+M
Sbjct: 206 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 261
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
L M + +++L +GDVI L+
Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLE 287
>gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila]
Length = 308
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P + Q ++ + +D E + +P+++ +G + L
Sbjct: 204 PFAYCQPHQQHLELTAMHNATPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255
Query: 94 VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140
++ G +I L G +D I N + G + E GVR+
Sbjct: 256 TSMQPGALIDL----GTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRI 299
>gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis
MSMB43]
Length = 168
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL + V P ++ D + P + D +
Sbjct: 48 EGENIMLNEPLTEPAVDDPHDDLHDEPTTADALPDASPQAFDVAAL-------------- 93
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N +GE+ + E
Sbjct: 94 PVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGEQ 149
>gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
DSM 574]
gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
DSM 574]
Length = 330
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ +++G + + + + L GDV+ L + + +D+ ++N+ K +
Sbjct: 259 VEISVVVGETDISVKDFLQLQVGDVLPLARGFNQDLDMYVDNELKYK---VQVGTVGQSL 315
Query: 137 GVRVIEI 143
V+V +
Sbjct: 316 AVQVTSL 322
>gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei DM98]
Length = 182
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
EG ++ ++ PL D+ + + + S + P + D +
Sbjct: 63 EGENIMLNEPLADSAIDALHDASHDTSHDEPTAAHAPPAF------------DIDAL--- 107
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E
Sbjct: 108 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 163
>gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591]
gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591]
Length = 134
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + ++PVK++ +LG M + + L +I+L +++ I
Sbjct: 42 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 101
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123
>gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
Length = 388
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+ +S+ ++ + + D +L V + L M + ++ L+ G
Sbjct: 292 PEEGPMSDENNTAAGAAPSEGVDTGEL----EVTLTFELERRLMTVRDVETLAPGYTFAF 347
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + N + + KG + + + GV+V+ +
Sbjct: 348 GGDALAPVTLYANGKSVGKGRLV---DLNGTLGVQVVSL 383
>gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 424
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D+P + + ++ + P + + + + D + + + + +
Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + + I+ L L G V+ L + V + Q I G + + H GVR+
Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414
>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
Length = 327
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
D+N + D M IPVK +LG+ + +S+ NL GD+I +DK+V + ++
Sbjct: 238 QEKDTNTYEDAIETVIDKAM-IPVK--AVLGTSKISVSDFANLQIGDIIRIDKKVDQELE 294
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + N K K + + + VRV E++ +
Sbjct: 295 VFVGNIKKFKA---LPGYYEDKYAVRVTEVIRKE 325
>gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 424
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D+P + + ++ + P + + + + D + + + + +
Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + + I+ L L G V+ L + V + Q I G + + H GVR+
Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414
>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
Length = 64
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
++++ G+ +++ ++ + DVI L + + E + + +N I KG + +++ HFG+
Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGI 57
Query: 139 RVIEIL 144
++ E++
Sbjct: 58 QMTELV 63
>gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
Length = 334
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+ + LG+ + I + + L GDVI LD+ + + + I + + G+ + +
Sbjct: 260 KLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQ---PGKRNKR 316
Query: 136 FGVRVIE 142
V++++
Sbjct: 317 LAVQILD 323
>gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
Length = 356
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+++ ++ + LI V + +LG + ++ L GDVI LD+ ++V ++
Sbjct: 238 SETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVIMLDRVADDTVHVS 297
Query: 116 INNQ 119
I+ +
Sbjct: 298 IDGR 301
>gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
BAA-430]
gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
BAA-430]
Length = 352
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 34/64 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+++ ++ + L+ V + +LG + + +++L GD++ LD+ ++V I
Sbjct: 239 SETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIVRLDRPADDTVIIN 298
Query: 116 INNQ 119
++ +
Sbjct: 299 VDGR 302
>gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4]
Length = 272
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129
LI + ++ +LG+ + +++ L GD++ LD +V E +D+ + + +K A +
Sbjct: 199 LISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVDEELDVFVGDIRKFA----ALP 254
Query: 130 EEDDTHFGVRVIEILNAQ 147
+ VRV +I+ +
Sbjct: 255 GASGKEYAVRVTQIIREE 272
>gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [delta proteobacterium MLMS-1]
gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [delta proteobacterium MLMS-1]
Length = 330
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
D I N V +++ LG + ++++NL+ GD I L++R E + + +
Sbjct: 252 VDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAG 301
>gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MEX-5]
gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MEX-5]
Length = 377
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 54 ISSDSNNILEKSTDNFDLI----MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
+++++++ + D D + + +PV + + + I L + +G VI L +
Sbjct: 280 MANEADHPGNDTPDRNDPVAIGALEVPVNF--EIDTVALPIDQLAAMRQGYVIELSRTTS 337
Query: 110 E-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ V +T ++Q I GE+ + + H GVR++++
Sbjct: 338 DMQVRLTAHSQVIGHGELVSVGD---HLGVRILQM 369
>gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
AK-01]
gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
AK-01]
Length = 325
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
+ + V++ + LG+ + L++L KGDVI+LD+ E + I + K +
Sbjct: 253 VQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVV 310
>gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii
DC283]
Length = 305
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV ++ +L + + L ++ G + L + +++ I +N + A+GE+ +E +
Sbjct: 225 LPVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALE--NG 282
Query: 135 HFGVRVIEI 143
V + +
Sbjct: 283 ALAVEMNHV 291
>gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
Length = 356
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++++ ++ + L+ V+++ +LG + + +++L GD+I L++ ++V +
Sbjct: 240 SETSSRKSRNKELRALLGGAKVELEAVLGYANLTMQEILDLVVGDIIKLNRPADDTVVVK 299
Query: 116 INNQKIAKGEITIMEEDDTHF--GVRVIEILNAQ 147
++ + E I + F +++ EIL +
Sbjct: 300 VDGR-----EKFIADFGIKRFRRAIKIREILKTE 328
>gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t.
morphotype B']
Length = 327
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
D N S S + E++T+ L+ + M+ ++G + + + L GD+I LD
Sbjct: 227 DKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLD 286
Query: 106 KRVGESVDITINNQKIAKGEIT----IMEEDDTHFGVRVIEILNAQ 147
+ +D+ + G + + V++ +IL+ +
Sbjct: 287 TTIDSLIDVYV-------GNVVKFKAVPGIHKNKSAVQIKQILDKE 325
>gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus
hydrogenoformans Z-2901]
Length = 335
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 29/46 (63%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+++ ILG +++ + + GD++ L+++V E +++ + +QK+
Sbjct: 263 ELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFVEDQKL 308
>gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
2379]
gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
2379]
Length = 325
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D + + D I + + +M P+++ + +G+ + + L++L+ GD I LDK
Sbjct: 227 DKLKAGMQFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDK 286
Query: 107 RVGESVDITINNQ 119
+ + +
Sbjct: 287 PCSSELLVKVEGT 299
>gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
SRS30216]
gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
SRS30216]
Length = 314
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D ++ P + + ++ S + ++ D+ + +IPV++
Sbjct: 191 LEVDGVAGTATLAMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLE---HIPVEV 247
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + + M+ ++ L GDV+ L R E +++ ++ +A
Sbjct: 248 SVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVVSSDAHVA 290
>gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens DSM 7]
gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens DSM 7]
gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
TA208]
gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens LL3]
Length = 332
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ SD N + T + + IM + + +LG+ + I ++L GD ITLDK V + +
Sbjct: 236 MQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295
Query: 113 DITINNQK 120
+ + N+
Sbjct: 296 TVLVGNKP 303
>gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
5427]
gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
5427]
Length = 328
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ ++ ILG + + + LS+ D++ LDK + +DI + N G E
Sbjct: 259 IPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTG---SPGEYKNKV 315
Query: 137 GVRVIEILNAQ 147
+++ ++ +
Sbjct: 316 AIKINHVIQRE 326
>gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi]
Length = 413
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM-- 79
+ P DT V T + D + + P + + P+ +
Sbjct: 285 VTTPFDDTAVFDNTAAFDA-----DTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 339
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ G + + +L L+ G V+TL + GE+ + Q +A GE+ + + G+
Sbjct: 340 TVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 395
Query: 139 RVI 141
++
Sbjct: 396 QIT 398
>gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
2489]
gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
2489]
Length = 344
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK-RVGESVDITINNQKIAKGEITI 128
+ + ++ +++ +GS + I ++++L GDVI L+ +VGE + +++ ++K + +
Sbjct: 253 EKLADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGV 312
Query: 129 MEEDDTHFGVRVIEILNAQ 147
+ + V++IE ++ Q
Sbjct: 313 VGK---KVAVQIIEKIDEQ 328
>gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937]
gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937]
Length = 382
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDN 68
+ LE + I P DT T + + D + P + S E T
Sbjct: 238 FTVTELEECPVAI--PFDDTTPFDDTIPFDDAAPFETDTAPETSPHAGFSAPDGEHHTGA 295
Query: 69 FDLIMNIPVKM--QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGE 125
P+ + + G + + +L L+ G V+TL + GE+ + Q +A GE
Sbjct: 296 PSGYALPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGE 354
Query: 126 ITIMEEDDTHFGVRVI 141
+ + + G+++
Sbjct: 355 LV---DVEGRLGLQIT 367
>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
1251]
gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [Sulfurimonas denitrificans DSM
1251]
Length = 372
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L+ V ++ +LG+ + + ++++L GD++ L + V I ++ + +G+ +
Sbjct: 257 LLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGK---IG 313
Query: 131 EDDTHFGVRVIEILNAQ 147
V+V EI++ +
Sbjct: 314 LRRFRKSVQVTEIIDTE 330
>gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava]
gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava]
Length = 354
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+D+I E + + + D ++ + + + G+ + + L +L+ G V+T +
Sbjct: 256 HLDDIDEHEHHPEADSTDANEDGLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315
Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
G ++ + + +A GE+ + + G+++
Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348
>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
2228]
Length = 335
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V++ +LGS + + + + L GDV+ LDK+V E+ ++ I + K E + +++
Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR--KYEAVVGNKNNHK 315
>gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
Length = 315
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
+P E ++Q++ + +SD + + +PV + + + + +
Sbjct: 212 APMRAGEGVVQRSKDELAEAAAASDRLHRTMST---------VPVDVHVRMRPVTVHPRD 262
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+V+L+ G+VI L+ V +D+ ++ +A G + + ++++
Sbjct: 263 VVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHG---VAGNNGRQLACKIVD 309
>gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 297
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 27/146 (18%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
+ ++ ++ ++E SM P DT +++P +++ L DN++E +
Sbjct: 158 LSALAPYTFTVTDMETVSM----PATDTMLAAPHSDASALEYTPTSDNVTENLPP----- 208
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
+PV + I GS M ++ L +L+ G V+TL D G++ + +
Sbjct: 209 -------------LPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQA-WLYHGDIA 254
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
+A G++ + + G+++ + +A
Sbjct: 255 LASGDLV---DVEGRLGLQITQCFSA 277
>gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis]
Length = 135
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
D EPI D + ++ + + ++P+ + + G + ++ L L G V
Sbjct: 34 QPGLPSDEPDEPIGPDEQDEQDEHSP-LSAVDSLPLDLTLRCGELRLTLAELRRLDAGTV 92
Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ + + + +A+GE+ + D G+++
Sbjct: 93 LEVSGIAPGYATLCHGERVVAEGELV---DVDGRLGLQIT 129
>gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
Length = 190
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 98 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179
>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
YUAN-3]
gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
YUAN-3]
Length = 335
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S + + + + IP++++ +LG+ + + + L GDV+ LD+ + E +
Sbjct: 240 SKTGDEQASRENLLRKVRQIPIELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVY 299
>gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia
rettgeri DSM 1131]
gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia
rettgeri DSM 1131]
Length = 310
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 4 KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNI 61
K+ + ++D L + + ++ + ++ E ++I++ E +
Sbjct: 163 KLLQTIELRDVLSIQQLQLNISVAGQVLARFQKQDEGLLMIEELVAPESEEEFVFPEEDE 222
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+++ F+ + + +K+ +LG + + L + G + ++ + V + N Q I
Sbjct: 223 MQEIVRPFN-VKEMNIKLTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFI 281
Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
A+GE+ + D G+ + +++
Sbjct: 282 AEGELIYIGNSDE-LGLEITHVVS 304
>gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia
xenovorans LB400]
gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein
[Burkholderia xenovorans LB400]
Length = 323
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114
+D +E +++ I +I + +LG+ + ++ L +L +G ++ E V +
Sbjct: 232 TDETQPVEMTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
A+GE+ + + GVRV
Sbjct: 291 LCQGIPFARGELI---DIEGALGVRVT 314
>gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 332
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ LGS + + +NLS GDVITL K V E + I I ++
Sbjct: 258 KLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDK 301
>gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
684]
gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
684]
Length = 329
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
+ ++ V + L + + +++L GD++ LD V + V + + +
Sbjct: 256 VEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGK 303
>gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
Length = 332
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ E+ D I V + LGS + I + + L GDVI L++ + +
Sbjct: 237 QTEKKEREPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLT 296
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
I I + G+ + + +++++
Sbjct: 297 IKIGDIPKFTGQ---PGKANKKLAIQILD 322
>gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 135
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 51/134 (38%), Gaps = 3/134 (2%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
++L + + + D + + E +D + +++ + D
Sbjct: 3 TEDLYQDEVEMLDEYDDQSPDHLSEQQEEQHWPDDEYAEQASGYAPADDERQDEQDESPA 62
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++ +++ + G + ++ L L G V+ + + Q +A+GE+ +
Sbjct: 63 LDSLELELTLRCGELRLTLAELRRLDAGSVLEVSGVAPGHATLCHGEQVVAEGELV---D 119
Query: 132 DDTHFGVRVIEILN 145
+ G+++ ++
Sbjct: 120 VEGRLGLQITRLVT 133
>gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11]
gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11]
Length = 190
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 98 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179
>gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
Length = 311
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ ++P+++ +L C +S++ + G + L V+IT +A GE+ E
Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELV---E 292
Query: 132 DDTHFGVRVIEILNAQ 147
D GV + ++ A+
Sbjct: 293 LDGRLGVEIHQVARAR 308
>gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7]
Length = 133
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 29 TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85
+ P Q++D ++ SD+ + + + +++ + + + + G
Sbjct: 15 DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGE 74
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ ++ L L G ++ + + Q +A+GE+ + + G+++ ++
Sbjct: 75 LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130
>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
Length = 327
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
S+ N E D + ++ + V ++ ILG C + +S+ V+L GD+I LD RV +
Sbjct: 234 FSTMQKNADEDYEDTLESMVKRVDVPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDM 293
Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + N + A + + VR+ ++ +
Sbjct: 294 QVYVGNIFKFTA-----LPGTAKDKYAVRITSVVREE 325
>gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
25644]
gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
25644]
Length = 336
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ N+ + ++ LG M ++ +NL GDVI LDK+ ++ I + +
Sbjct: 261 LNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFY---VKPGQ 317
Query: 132 DDTHFGVRVIE 142
D + +++
Sbjct: 318 KDGQLAIELLD 328
>gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia
coli 1827-70]
gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia
coli 1827-70]
Length = 81
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
+ ++PVK++ +LG M + + L + +L ++++I +N GE+
Sbjct: 2 INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELVE 61
Query: 129 MEEDDTHFGVRV 140
+++ GV +
Sbjct: 62 VDD---KLGVEI 70
>gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 23344]
gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10229]
gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10247]
gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 10399]
gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
2002721280]
gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 23344]
gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10247]
gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
2002721280]
gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 10399]
gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10229]
Length = 645
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + ++ D+ + D + +
Sbjct: 523 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 573
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 574 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 630
Query: 136 FGVRV 140
GVR+
Sbjct: 631 LGVRI 635
>gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC
11568]
gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC
11568]
Length = 209
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+++ + + P + D + + + + P+ + + LG + + L L G ++
Sbjct: 112 KESRMTEAAAPPAEDEHGLTPGA--------DTPIAVTVDLGETAVPLKTLTELRPGAIL 163
Query: 103 TLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
L E V + Q A+G + + E + V + + + +
Sbjct: 164 PLTGLDAEMRVTLRSAGQAFARGRLVSLGEA---YAVLIDAVADPK 206
>gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori
HPKX_438_CA4C1]
Length = 125
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 45 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 104
Query: 116 INNQK 120
++ +K
Sbjct: 105 VHKKK 109
>gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
Length = 309
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + I IP+ + +L + + I L L+ G L ++I N + IA+GE+
Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291
Query: 128 IMEE 131
+++
Sbjct: 292 KIKD 295
>gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088]
gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088]
gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli
1357]
Length = 173
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162
>gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320]
Length = 309
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + I IP+ + +L + + I L L+ G L ++I N + IA+GE+
Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291
Query: 128 IMEE 131
+++
Sbjct: 292 KIKD 295
>gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
DSM 771]
gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
DSM 771]
Length = 331
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 45 NDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ + ++ +SD++ + S N +++PV + ++LG + L L G +T
Sbjct: 228 KEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKTLSTVEELARLEIGKKLT 287
Query: 104 LDKRVGESVDITINNQKIAKGEIT 127
L E V+I + + KG++
Sbjct: 288 L-PLSAECVEIYAGDTLVGKGKLI 310
>gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
Length = 331
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+S+ + + D L + + + LG + ++ + LS GDVI+L+K V E +
Sbjct: 234 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 293
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I + + G ++ + V++ EI+N
Sbjct: 294 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 324
>gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
FZB42]
gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42]
Length = 332
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ SD N + T + IM + + +LG+ + I ++L GD ITLDK V + +
Sbjct: 236 MQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295
Query: 113 DITINNQK 120
+ + N+
Sbjct: 296 TVLVGNKP 303
>gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 107-1]
gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 107-1]
Length = 173
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162
>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
Length = 325
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132
IPVK +LG + ++ L+N+ KGD+I LD+++ + + + + N + A +
Sbjct: 258 IPVK--AVLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIKKFTA-----LPGAS 310
Query: 133 DTHFGVRVIEILNAQ 147
+ V++ I+ +
Sbjct: 311 SDSYAVKISTIIREE 325
>gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
Length = 333
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
SS +++ + I + +++ LG + I + + L GDVI L V +
Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDVIRLQTSVHNPLT 296
Query: 114 ITI 116
I +
Sbjct: 297 IYV 299
>gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
Length = 253
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ +IP + ++L + I+++ ++ GD I L K + +D+ + NQ + KG++ +
Sbjct: 188 LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 243
Query: 132 DDTHFGVR 139
++ GV+
Sbjct: 244 ENAQLGVK 251
>gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
Length = 374
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
+P S TD+ D ++I + +++ + + M ++ L L G V+ L
Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + Q I GE+ + + H GVR++++
Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367
>gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus
polymyxa SC2]
gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
polymyxa SC2]
Length = 332
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+S+ + + D L + + + LG + ++ + LS GDVI+L+K V E +
Sbjct: 235 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
I + + G ++ + V++ EI+N
Sbjct: 295 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 325
>gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27]
gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27]
Length = 334
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 218 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 277
Query: 116 INNQK 120
++ +K
Sbjct: 278 VHKKK 282
>gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
Length = 374
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
+P S TD+ D ++I + +++ + + M ++ L L G V+ L
Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + Q I GE+ + + H GVR++++
Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367
>gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb
gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae]
gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae]
Length = 133
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 29 TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85
+ P Q++D ++ SD+ + + + +++ + + + + G
Sbjct: 15 DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGD 74
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ ++ L L G ++ + + Q +A+GE+ + + G+++ ++
Sbjct: 75 LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130
>gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4]
Length = 326
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
LI P+ ++ +LG+ + +++ + L GD+I LD +V + + + + + + A +
Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306
Query: 129 MEEDDTHFGVRVIEILNAQ 147
E + VR+ ++ +
Sbjct: 307 PGETGDDYAVRITSVIREE 325
>gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
Length = 325
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ +M P+ + + +G + +S+L++L+ GD I L+ + + + + K G I
Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMG---IA 304
Query: 130 EEDDTHFGVRVIEILNA 146
+ V++ LNA
Sbjct: 305 GVSGGNKAVQITRALNA 321
>gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei Pakistan 9]
gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei Pakistan 9]
Length = 432
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417
Query: 136 FGVRV 140
GVR+
Sbjct: 418 LGVRI 422
>gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 576]
gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 576]
Length = 432
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417
Query: 136 FGVRV 140
GVR+
Sbjct: 418 LGVRI 422
>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
16294]
gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
16294]
Length = 366
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L+ V ++ LG + + +++ L GDVI L + V + ++ ++ +GE +
Sbjct: 254 LLGGAKVNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGE---IG 310
Query: 131 EDDTHFGVRVIEILNAQ 147
+ + EI+ +
Sbjct: 311 LRRFRKSISITEIIETE 327
>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
Length = 326
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
S D N E+ + D IP++ +LG + +++ VNL GDV+ L+ +V
Sbjct: 234 FSALQEKDDTNYGEQIEEIIDR-AQIPIR--AVLGKSVVSVNDFVNLQPGDVVRLNAKVD 290
Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +D+ + N K K + + +R+ +++ +
Sbjct: 291 DELDVFVGNMKKFKA---LPGASSGVYALRITKVIREE 325
>gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1]
Length = 326
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
LI P+ ++ +LG+ + +++ + L GD+I LD +V + + + + + + A +
Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306
Query: 129 MEEDDTHFGVRVIEILNAQ 147
E + VR+ ++ +
Sbjct: 307 PGETGDDYAVRITSVIREE 325
>gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21]
gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21]
Length = 325
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ +M P+ + + +G + +S+L++L+ GD I L+ + + + + K
Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTK 298
>gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str.
Sheeba]
gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba]
Length = 354
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 38/65 (58%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ ++ V M ++LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNRELQALLSSVSVDMIVLLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
5501]
gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
5501]
Length = 333
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+S + E+ D + + + LG+ + +++L++L GDVI +D++ + +
Sbjct: 238 TSRDSASSEELNKLKDRLSKAKLPVIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVV 297
Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ N + I K + + + + +L+ +
Sbjct: 298 KVGNKEKFIGKPGVV-----GSKLAIEISSVLDKE 327
>gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. Ch1-1]
gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. Ch1-1]
Length = 323
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114
+D +E +++ I +I + +LG+ + ++ L +L +G ++ E V +
Sbjct: 232 TDETQPVEVTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
A+GE+ + + GVRV
Sbjct: 291 LCQGIPFARGELI---DIEGAMGVRVT 314
>gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis PB1/+]
Length = 320
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309
>gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1]
Length = 270
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 167 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 224
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 225 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 259
>gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola]
gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis Angola]
Length = 294
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 191 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 248
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 249 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 283
>gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia
pseudotuberculosis IP 32953]
Length = 306
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295
>gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis
CA88-4125]
gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92]
gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92]
gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis
CA88-4125]
Length = 306
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295
>gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10]
gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516]
gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. IP275]
gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides A]
gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003]
gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM
10]
gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis
Antiqua]
gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides F]
gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. IP275]
gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides A]
gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004]
gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038]
gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003]
gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 320
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ S+P++ S + ++P + + +G + + + L+ G +
Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274
Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N Q + +G + +E VR+ +
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309
>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
6192]
gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
6192]
gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
6578]
Length = 341
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ I ++ V + + +GS +++ +++++ KGDVI L RV E + + I N+
Sbjct: 254 ERISSVEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRP 304
>gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 424
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 19/126 (15%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLIMNI 75
D P SSP + + + D + P +D + +
Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD--------------LGEV 351
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDT 134
+ + + + + + I+ L L G V+ L + V + Q I G + +
Sbjct: 352 ALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---A 408
Query: 135 HFGVRV 140
H GVR+
Sbjct: 409 HLGVRI 414
>gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 334
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ V + + LG + + +++ L GDVI LD + + V + + ++ G D
Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGR---PGTVDG 314
Query: 135 HFGVRVIEILN 145
+ V V+E+ +
Sbjct: 315 RYSVEVLEVAD 325
>gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106b]
gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106a]
gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106b]
Length = 436
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 314 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 364
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 365 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 421
Query: 136 FGVRV 140
GVR+
Sbjct: 422 LGVRI 426
>gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
Length = 334
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
P+ + + LG+ M I + L GDV+ LD +V + + I + +
Sbjct: 260 PIPLIVELGTIDMTIREFLTLGFGDVLQLDTKVKDELKILVGQKP 304
>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
12809]
gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
12809]
Length = 336
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
EK + ++ + V I LG + I +++ L GD++ + + V+I NN++
Sbjct: 247 GEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQK 306
Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
GE+ V++ + +
Sbjct: 307 FLGEV---GTLGVKKAVKITQFITE 328
>gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
Length = 398
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S+ +++S + S +L + +G +++ L L G + L
Sbjct: 294 SDGAAAESATVEPASVGALEL------PVVFEIGRLHLRLDELAALVPGHTLALGGETPS 347
Query: 111 S-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
VDI + Q +A+G + + GV++
Sbjct: 348 PVVDIRVAGQLLAQGRLVDVGGIP---GVQIT 376
>gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271]
gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271]
Length = 113
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG M + + +L +I+L ++++I
Sbjct: 21 NESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIEIR 80
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 81 VNGALTGYGELVEVDD---KLGVEI 102
>gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
dadantii Ech586]
gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
dadantii Ech586]
Length = 394
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
+ + +P N +S + + +E + L
Sbjct: 266 PIPVGDPTPFDNTASYGDTTLDACNVQHTSPCAESTLPSGEPLSGYPLPPLAL------A 319
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFG 137
+ + G + + +L L+ G V+TL + + GE+ + Q +A+GE+ +E G
Sbjct: 320 LTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEAT-LYHGEQPLAQGELVNVE---GRLG 375
Query: 138 VRVI 141
+++
Sbjct: 376 LQIT 379
>gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 432
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 310 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 360
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417
Query: 136 FGVRV 140
GVR+
Sbjct: 418 LGVRI 422
>gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243]
gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 1710b]
gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 1710b]
gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 428
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 356
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 357 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 413
Query: 136 FGVRV 140
GVR+
Sbjct: 414 LGVRI 418
>gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori
Gambia94/24]
Length = 354
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
Ech1591]
gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
Ech1591]
Length = 387
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN------IPVKM 79
L++ V++P +++ + D + +S DN ++ + + +
Sbjct: 254 LEECPVTTPFDDTAVFDNTASFDAYTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 313
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ G + + +L L+ G V+TL + GE+ + Q +A GE+ + + G+
Sbjct: 314 TVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 369
Query: 139 RVI 141
++
Sbjct: 370 QIT 372
>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
MMB-1]
gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
MMB-1]
Length = 329
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ + SD + ++ + + + ++ V + + + S + + +++ GDVI ++
Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMP- 285
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E V + NN +G++ + + V++ E + AQ
Sbjct: 286 -EYVTVRANNVPTFRGKL---GSSNGKYSVQMKESIKAQ 320
>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
ND132]
Length = 325
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +M PV+M + LG + L+ L +GD+I LD E ++ +
Sbjct: 250 ERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298
>gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens
KN400]
Length = 328
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ P+ + + +G + +++L++L GD I LD + + +
Sbjct: 253 LLEAPLDVSVEVGGAVISLNDLLSLVPGDTIMLDTPCTSDLTVKVGG 299
>gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
Length = 333
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
+ I V + LG+ ++I + +NL GD I L++ + E + + ++ + I +
Sbjct: 252 EGIKEAKVPLTAELGTATIKIEDFLNLEIGDCIRLNQTIEEPLVVKVDKIPKFIGQ---- 307
Query: 128 IMEEDDTHFGVRVIEIL 144
+ T V++++I+
Sbjct: 308 -PGKQGTKMAVQILDII 323
>gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38]
gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38]
gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori
HPKX_438_AG0C1]
gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori
Lithuania75]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695]
gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1]
gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695]
gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7]
Length = 354
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
GS-15]
gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
GS-15]
Length = 327
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ P+ + + +G + + L+NL+ GD I LD + + +
Sbjct: 252 LLEAPLDLSVEVGGAIISMDELLNLTPGDTIMLDTPCNSDLVVKVGG 298
>gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83]
Length = 354
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori
SouthAfrica7]
Length = 354
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51]
gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52]
gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57]
Length = 354
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|194435192|ref|ZP_03067422.1| Spa33 [Shigella dysenteriae 1012]
gi|194416571|gb|EDX32710.1| Spa33 [Shigella dysenteriae 1012]
Length = 293
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
+I VK+ IL M I+ L + L K + V+I +N + GE+ +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279
Query: 131 EDDTHFGVRVIE 142
+ +G+ +
Sbjct: 280 DG---YGIEISS 288
>gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99]
gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908]
gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 354
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12]
gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12]
Length = 354
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|162460689|ref|NP_001105000.1| FDR3 [Zea mays]
gi|14090543|gb|AAK53546.1| FDR3 [Zea mays]
Length = 355
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITIN 117
+ ++ D + ++ + + I + + + I + L G ++ L + + +
Sbjct: 266 RAAPDAASSPLD-VSDVELPVHIEVVTVNLPIGQIAALQPGYILALPVALADADIRLVAH 324
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
Q +A GE+ + + G+ + I NA
Sbjct: 325 GQTLAFGELVAIGD---QLGLHIRRIANA 350
>gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30]
Length = 354
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20]
gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464]
Length = 354
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|187734486|ref|YP_001883215.1| Spa33 [Shigella boydii CDC 3083-94]
gi|187426982|gb|ACD06257.1| Spa33 [Shigella boydii CDC 3083-94]
Length = 293
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
+I VK+ IL M I+ L + L K + V+I +N + GE+ +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279
Query: 131 EDDTHFGVRVIE 142
+ +G+ +
Sbjct: 280 DG---YGIEISS 288
>gi|32307045|gb|AAP79015.1| Spa33 [Shigella flexneri]
gi|320182864|gb|EFW57739.1| surface presentation of antigens protein SpaO [Shigella flexneri
CDC 796-83]
Length = 293
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
+I VK+ IL M I+ L + L K + V+I +N + GE+ +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279
Query: 131 EDDTHFGVRVIE 142
+ +G+ +
Sbjct: 280 DG---YGIEISS 288
>gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius]
Length = 285
Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
VDN+ P + ++ ++ +PV ++ +L + ++ L NL G V L +
Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260
Query: 107 RVGESVDITINNQKIAKG 124
V +++ I +N Q + G
Sbjct: 261 NVEKNIKIFLNQQLVGHG 278
>gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
H10]
gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
H10]
Length = 328
Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ N +E + + + I + V ++ +LG + IS ++L GDV+ LD V +
Sbjct: 235 FTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDL 294
Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+I + + + AK + +++ E+L +
Sbjct: 295 EILVGDLPKFKAKPGV-----KKNKVAIKITEVLRRE 326
>gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
100599]
gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
100599]
Length = 331
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+ + +G+ + + + + L KGDVI LD+ + + I + N G+
Sbjct: 258 KLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQ---PGTHKGR 314
Query: 136 FGVRVIEILNA 146
V++ E++
Sbjct: 315 VAVQIDEVIEE 325
>gi|82524596|ref|YP_406191.1| Spa33 [Shigella dysenteriae Sd197]
gi|81243994|gb|ABB64703.1| Spa33 [Shigella dysenteriae Sd197]
Length = 293
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
+I VK+ IL M I+ L + L K + V+I +N + GE+ +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279
Query: 131 EDDTHFGVRVIE 142
+ +G+ +
Sbjct: 280 DG---YGIEISS 288
>gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
Length = 326
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ +M PV++ + G + L++L GD+I LD V +D I + +G
Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRG 304
>gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167]
Length = 134
Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 42 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123
>gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
11293]
gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
11293]
Length = 341
Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 64 KSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINN 118
+T+N +++ + + + + +G + + ++++L GDVI L D RVG+ + I I N
Sbjct: 242 ATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDVIRLPDVRVGDPMTIKIGN 301
Query: 119 QK 120
+K
Sbjct: 302 RK 303
>gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli
1180]
Length = 134
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 42 NESKIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123
>gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
Length = 356
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++++ ++ + L+ ++++ +LG + + +++L GD+I L++ ++V +
Sbjct: 240 NETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDIIKLNRPADDTVIVK 299
Query: 116 INNQKIAKGEITIMEEDDTHFGVR-------VIEILNAQ 147
++ + E+ FGVR + EIL +
Sbjct: 300 VDGR----------EKFIAEFGVRRYRRSIKIKEILKTE 328
>gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli
EC4100B]
Length = 173
Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 81 NESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162
>gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143]
gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143]
Length = 113
Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
E + ++PVK++ +L M + + +L +I+L ++++I +N
Sbjct: 28 ENDYQQINSFEDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 87
Query: 123 KGEITIMEEDDTHFGVRV 140
GE+ +++ GV +
Sbjct: 88 YGELVEVDD---KLGVEI 102
>gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 108
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ +IP + ++L + I+++ ++ GD I L K + +D+ + NQ + KG++ +
Sbjct: 43 LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 98
Query: 132 DDTHFGVR 139
++ GV+
Sbjct: 99 ENAQLGVK 106
>gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia MC0-3]
gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia MC0-3]
Length = 290
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
IPV + + + S M++ L+ + GDV+ + + E+VD+ +NN
Sbjct: 225 IPVTISVHVLSKNMRLDELLRMRPGDVLPV-RLP-ETVDVLVNN 266
>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
Length = 335
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I N+ + ++ ILG + I + + LS GD+I LD+ V + + + + G+
Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGK---PGL 314
Query: 132 DDTHFGVRVIEILNAQ 147
H V++ +++ +
Sbjct: 315 RHNHMAVKITDVIYQE 330
>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
Length = 327
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P E ++ K +I + + +E ++ V ++ LG+ M++ +
Sbjct: 222 PVIVLEPVLNKIGTHDILARSKKATEDRIEDIARTLKEVL---VYLEFRLGTAAMKVEDF 278
Query: 94 VNLSKGDVITLDKRVGESVDITINN 118
++L +GD++TLDK+V + + + IN
Sbjct: 279 LSLKEGDLLTLDKKVDDELPVFING 303
>gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
MI-1]
gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
MI-1]
Length = 330
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + +++G + + + + L GDV+ L + + + +D+ ++ + K +
Sbjct: 259 VAISVVMGEAQITVKDFLQLQVGDVLPLGRGLTQDLDMYVDEELKYK---VQVGTVGQSL 315
Query: 137 GVRVIEI 143
V+V +
Sbjct: 316 AVQVTSL 322
>gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
Length = 335
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ + + G+ + + L NL G V+ + + ++ I +G++ E D
Sbjct: 268 MALTVRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLV---EVDGRL 324
Query: 137 GVRVIEIL 144
G++V +L
Sbjct: 325 GLQVSRVL 332
>gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens
MLS10]
gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens
MLS10]
Length = 333
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ + + +L I P+ + + LG + I V+L+ GD I L++ + E +
Sbjct: 235 MQTKKKERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELL 294
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+T+ K + H V+++E + +
Sbjct: 295 RMTVGGSPKYK---VQPGKVKEHLAVQIVEDIEEE 326
>gi|303892|dbj|BAA02828.1| spa33 [Shigella flexneri]
gi|829079|dbj|BAA09161.1| ORF21 [Shigella sonnei]
gi|281603907|gb|ADA76890.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2002017]
Length = 293
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
S+SN E + + L +I VK+ IL M I+ L + L K +
Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N + GE+ +E+ +G+ +
Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288
>gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei NCTC 13177]
Length = 217
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 95 PADRASDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 145
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 146 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 202
Query: 136 FGVRV 140
GVR+
Sbjct: 203 LGVRI 207
>gi|13449099|ref|NP_085315.1| Type III secretion protein [Shigella flexneri 5a]
gi|74314951|ref|YP_313369.1| Spa33 [Shigella sonnei Ss046]
gi|60415911|sp|P0A1K9|SPAO_SHIFL RecName: Full=Surface presentation of antigens protein SpaO;
AltName: Full=Spa33 protein
gi|60415912|sp|P0A1L0|SPAO_SHISO RecName: Full=Surface presentation of antigens protein SpaO;
AltName: Full=Spa33 protein
gi|13310647|gb|AAK18471.1|AF348706_160 Type III secretion protein [Shigella flexneri 5a]
gi|152794|gb|AAA26543.1| spa33 [Shigella flexneri]
gi|12329096|emb|CAC05827.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
gi|73858428|gb|AAZ91134.1| Spa33 [Shigella sonnei Ss046]
Length = 293
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
S+SN E + + L +I VK+ IL M I+ L + L K +
Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N + GE+ +E+ +G+ +
Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288
>gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
2782]
gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
2782]
Length = 328
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ N +E + + + I + V ++ +LG + IS ++L GDV+ LD V +
Sbjct: 235 FTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLDTNVNGDL 294
Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+I + + + AK + V++ E+L +
Sbjct: 295 EILVGDLPKFNAKPGV-----KKNKVAVKITEVLRRE 326
>gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
35236]
gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
35236]
Length = 269
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 53 PISSDSNNILEKSTDNFD-------LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ D ++L + D+ D I ++P + + +G + + L L GD++ +
Sbjct: 158 ELVQDVESLLMEERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVA 217
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ G V + +N + + GE+ F VR+
Sbjct: 218 AQFGGEVKLRLNGRVLGAGELV---GCGDSFLVRIN 250
>gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
Length = 326
Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
+P S TD+ D I + + +++ + + M ++ L L G V+ L
Sbjct: 226 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 285
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + Q I GE+ + + H GVR++++
Sbjct: 286 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 319
>gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 103
Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
++ + ++ +++ + +G M IS L L + ++ L ++V ++ + IAK
Sbjct: 22 ETPLDLAILEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAK 81
Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
G + ++E + + + ++ + +
Sbjct: 82 GRLVAVDE---YLALEITQVTSNE 102
>gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A]
Length = 354
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 35/65 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++N+ ++ + L+ + V M + LG + + +++L GD I L+K + V +
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGVVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297
Query: 116 INNQK 120
++ +K
Sbjct: 298 VHKKK 302
>gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 91]
Length = 199
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 77 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 127
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 128 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 184
Query: 136 FGVRV 140
GVR+
Sbjct: 185 LGVRI 189
>gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens]
Length = 330
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--DLIMNIPVKMQIILGSC 86
+ S P + + I++ VD + + E D F + + + + + G+
Sbjct: 213 DDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALTVRCGTL 272
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ + L NL+ G V+ + + ++ I +G++ E D G+++ ++ +
Sbjct: 273 NLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLV---EVDGRLGLQLSRVIFS 329
Query: 147 Q 147
+
Sbjct: 330 R 330
>gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia
ubonensis Bu]
Length = 144
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
+ ++ + + + + + + I+ L L G V+ L + V + Q I G + +
Sbjct: 68 LGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 127
Query: 131 EDDTHFGVRV 140
H GVR+
Sbjct: 128 ---AHLGVRI 134
>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
Length = 357
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 34/64 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S++++ ++ + LI + + LG + + ++ L +GD+I LD+ ++V +
Sbjct: 238 SETSSKKSRNKELQALIGGAGISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVA 297
Query: 116 INNQ 119
I+ +
Sbjct: 298 IDGK 301
>gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
Length = 255
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT-INNQKIAKGEITIMEEDDT 134
+ + G+ + + ++++ GDVI L K++G+SV ++ +K+ G + + +D
Sbjct: 190 KISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGV---NDN 246
Query: 135 HFGVRVI 141
+F ++V
Sbjct: 247 NFAIKVT 253
>gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
Length = 113
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +LG + + + +L +I+L ++++I
Sbjct: 21 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 80
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 81 VNGALTGYGELVEVDD---KLGVEI 102
>gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35243]
gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
28-1]
gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35239]
gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35243]
gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
28-1]
gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35239]
gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
Length = 307
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTDNFDLIMN 74
++ + D ++ P I K D D SE ++ + ++ DN +
Sbjct: 179 PITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLE---E 235
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
IPV++ + + L L+ GD + L +D+ +++ +A
Sbjct: 236 IPVEVAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILA 283
>gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-C]
Length = 334
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 39 EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
++I V++ + +SS S E+ D + +PV+++ + G + + L+
Sbjct: 216 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 275
Query: 95 NLSKGDVITLDKRVGESVDITINNQ 119
L++G+V+ LD G V + + +
Sbjct: 276 ELAEGEVLLLDTDEGRPVPVVVQGR 300
>gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5]
gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5]
Length = 182
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ I E +S + E+ + ++ +PV ++++L +++ +VN+ KG VI K
Sbjct: 89 LKEIKEELSMRKPDPKERE-ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGK 147
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
E V++ + + G I+ E + V++ +IL
Sbjct: 148 TPQEEVEVLVQGRLKFLG---ILGEKNGKRAVKISKIL 182
>gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis
C6786]
Length = 320
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 41 LIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ ++ +D++ + ++++ T + D + PV ++ +L + ++ L + G
Sbjct: 213 PLSEDAIDDLHDERAAAEAPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQLASCHPG 269
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEED 132
V+ + GE V I N + GE+ + E
Sbjct: 270 LVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 301
>gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio
vulgaris str. Hildenborough]
gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris RCH1]
Length = 484
Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
P S S+ + D + V + L M++++L L+ G L
Sbjct: 335 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 393
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V + + + I +G + + D GV+V+ + +A
Sbjct: 394 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 425
>gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-1]
gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-1]
Length = 338
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 39 EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
++I V++ + +SS S E+ D + +PV+++ + G + + L+
Sbjct: 220 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 279
Query: 95 NLSKGDVITLDKRVGESVDITINNQ 119
L++G+V+ LD G V + + +
Sbjct: 280 ELAEGEVLLLDTDEGRPVPVVVQGR 304
>gi|31983540|ref|NP_858285.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|18462532|gb|AAL72304.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
Length = 248
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
S+SN E + + L +I VK+ IL M I+ L + L K +
Sbjct: 158 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 214
Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
V+I +N + GE+ +E+ +G+ +
Sbjct: 215 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 243
>gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
Length = 388
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 51 SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
+P S TD+ D I + + +++ + + M ++ L L G V+ L
Sbjct: 288 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 347
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
V + Q I GE+ + + H GVR++++
Sbjct: 348 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 381
>gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
Length = 322
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
+ I +D I + + + + +M PV ++ IL + M + L+ + +G
Sbjct: 213 LAIPMKTIDPIKDILRTADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEG 272
Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
D I LD R +S+ + + + KG I+ E V++ +
Sbjct: 273 DFIPLDPRATDSITVKVAGVPMFKG---ILGESAGRKAVKIKSFV 314
>gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
Length = 323
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
N E S I PLQ S S M D D + EK I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
++IP+ + L + + L+ + GDV+ + + E+V + + Q I A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307
>gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 112]
Length = 238
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 116 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 166
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 167 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 223
Query: 136 FGVRV 140
GVR+
Sbjct: 224 LGVRI 228
>gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei BCC215]
Length = 209
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 87 PADRAGDLPADSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 137
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 138 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 194
Query: 136 FGVRV 140
GVR+
Sbjct: 195 LGVRI 199
>gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 368
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI-MNIPVKMQIILGS 85
+ + E + + ++S + + D+ +++PV ++
Sbjct: 254 PEDQGNGGEQFVENHTEAPNSHGQQRTARANSGRQSGQQSSGIDVSGLDLPVVFELE--R 311
Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
M + N+ L+ G L V V + +N + I G + + + GV+V++++
Sbjct: 312 QFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLV---DLNGSLGVQVVQVM 367
>gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 323
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
N E S I PLQ S S M D D + EK I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
++IP+ + L + + L+ + GDV+ + + E+V + + Q I A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307
>gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
Length = 353
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
V++ ++ S + S + + G V LDKR + VD+ + +
Sbjct: 274 VELTAVIESRTVPFSEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRA 321
>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
Length = 333
Score = 40.6 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + PV M+++LG M + N + L GD+I LD + + + +++
Sbjct: 258 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302
>gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis
MPA1U2]
gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis
MPA1U2]
Length = 327
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
+ + ++++ +LG ++ + +NL KGDVI LD+ V + ++N+ + +
Sbjct: 247 EKLHGTKMEIKAVLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGV- 305
Query: 130 EEDDTHFGVRVIEI 143
++V E+
Sbjct: 306 --SKGRMAIQVTEV 317
>gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira
thiodismutans ASO3-1]
Length = 325
Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ ++ IPV + +G + L+N+ GD++ LD + + +
Sbjct: 250 ERLLEIPVDFNVTMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVL 300
>gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris DP4]
Length = 475
Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
P S S+ + D + V + L M++++L L+ G L
Sbjct: 326 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 384
Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V + + + I +G + + D GV+V+ + +A
Sbjct: 385 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 416
>gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas
syringae pv. syringae 642]
gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae]
Length = 393
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
++ + ++ D S + E T F+ ++ + + + G
Sbjct: 279 EEDAGLDDDRYEDDAVEDEDGHEHHADPHPSSGPVSETPTGAFN---DLALPLTLRCGQI 335
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
+ + L L G V+ + + +++A+GE+ + + G++++++
Sbjct: 336 NLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELV---DVEGRLGLQILQV 389
>gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018]
Length = 331
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 55 SSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+ I+++S +++ V + LG + + + + LS GDVITL+ + + V
Sbjct: 236 QENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDFLRLSIGDVITLNSKCSDPVP 295
Query: 114 ITI 116
+ I
Sbjct: 296 VYI 298
>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
Length = 279
Score = 40.6 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
++ ++ + I +PV++ ++ S M +S ++ L GD++ + + + E D+ IN
Sbjct: 195 PPAPAAQAGNSLNQIRQLPVRLDCVVASLQMPLSQVLALRPGDILPM-RLL-ERCDVQIN 252
Query: 118 NQKIAKGEITIMEEDDTHF 136
QK+ +G I E+D + F
Sbjct: 253 QQKLFRG--AIFEDDGSLF 269
>gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei DM98]
Length = 216
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + + + + P D+ + D + +
Sbjct: 94 PADRAGDLPADSAAHSSPGSLAGL---QAGLQADASPR--DARYAAPEPAD----LGEVA 144
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 145 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 201
Query: 136 FGVRV 140
GVR+
Sbjct: 202 LGVRI 206
>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
Length = 331
Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + PV M+++LG M + N + L GD+I LD + + + +++
Sbjct: 257 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301
>gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides]
Length = 323
Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
N E S I PLQ S S M D D + EK I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
++IP+ + L + + L+ + GDV+ + + E++ + + Q I A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307
>gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
12168]
gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
12168]
Length = 344
Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
+ + ++ + + +GS + I +++ L GD++ L + R+ + + ++I N+K
Sbjct: 252 EKLSDVDMDVVAEIGSVSLPIRDVLALRVGDIVRLSNVRITDPITLSIGNKK 303
>gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905]
gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905]
Length = 331
Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + + LG + I + + + GDVI L++++ + + + +
Sbjct: 259 KLPLSVELGLTDITIEDFLTMQVGDVIQLEQKINDPLLLKV 299
>gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
Length = 353
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D S D +M++ V +
Sbjct: 205 IELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRW----SKALQDEVMDVEVSL 260
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
L + + +L+ + GDVI + ++ ++ + I + +G++ + + + ++
Sbjct: 261 TAKLLETTLSLRDLMEMEAGDVIPV--KMPDACTVYIEDLPTFRGKL---GQSNDNLAIK 315
Query: 140 VIE 142
+ +
Sbjct: 316 ITD 318
>gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
Length = 227
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 13/119 (10%)
Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
D P SSP + + + P + + + + D + + + + +
Sbjct: 111 DLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 161
Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ + + I+ L L G V+ L + V + Q I G + + H GVR+
Sbjct: 162 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 217
>gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
11B]
gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
11B]
Length = 314
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
++ + P D ++LE+S + ++ +++ + + L+NLS GDV++L
Sbjct: 212 LEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQFPYVALTPHELLNLSVGDVLSLR 271
Query: 106 KRVGESVDITINNQKIAKG 124
+ IT A
Sbjct: 272 HPTNAPLLITAEGIPFAYA 290
>gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
Length = 360
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDTH 135
+ LGS + + + N G + L + ES V + N+ IA+G++ + +
Sbjct: 292 LSFRLGSANLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGD---R 348
Query: 136 FGVRVIEI 143
GVR+ I
Sbjct: 349 VGVRLSRI 356
>gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
JJ]
gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
JJ]
Length = 326
Score = 40.6 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ +M PV+M + G + L++L GD+I LD V ++ + + +G
Sbjct: 250 ERLMETPVEMLVRFGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRG 304
>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
C3-41]
gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
Length = 331
Score = 40.2 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + + LG + I + + + GDVI L++++ + + + +
Sbjct: 259 KLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDPLLLKV 299
>gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis YPIII]
Length = 320
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P + + +G + + + L+ G + V+I +N Q + +G + +E
Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301
Query: 134 THFGVRVIE 142
VR+ +
Sbjct: 302 -QLVVRIAQ 309
>gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pseudotuberculosis IP 31758]
Length = 320
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
++P + + +G + + + L+ G + V+I +N Q + +G + +E
Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301
Query: 134 THFGVRVIE 142
VR+ +
Sbjct: 302 -QLVVRIAQ 309
>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 322
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + + + L M + L+NL G I L+ + +S+++ + +
Sbjct: 240 LKKLSKVELNFTLELSRFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKP 291
>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
Length = 353
Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 36/64 (56%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD+++ ++ + LI V + LG+ + + +++L GD++ LD+ +++ ++
Sbjct: 238 SDTSSKKSRNKELQALIAGANVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVS 297
Query: 116 INNQ 119
++ +
Sbjct: 298 VDGR 301
>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
1]
gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
1]
Length = 365
Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
L+ V ++ LG + + ++++L GDV+ L + V ++I+ ++ +G+ +
Sbjct: 254 LLGGAKVNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQ---IG 310
Query: 131 EDDTHFGVRVIEILNAQ 147
+++ EI++ +
Sbjct: 311 LRRFRKSIQISEIIDTE 327
>gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
35580]
gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
35580]
Length = 344
Score = 40.2 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
+ + + + + +GS + + +++NL GDV+ L D RVG +++ ++K
Sbjct: 252 EKLSTVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRK 303
>gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides]
gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
Length = 323
Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
N E S I PLQ S S M D D + EK I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
++IP+ + L + + L+ + GDV+ + + E++ + + Q I A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307
>gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
43531]
gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
43531]
Length = 333
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S D + E+ + I V + LG M I+ + L GDV+ LD + +
Sbjct: 238 ASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGDVLQLDTLTKDELV 297
Query: 114 ITI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ N + +A+ V++ ++ +
Sbjct: 298 CYVGSNPKFLAR-----PGTAGKRMAVQISGVIEGE 328
>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
16841]
gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
16841]
Length = 326
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
LI + ++ +LG+ + + + VNL GD+I LD V + ++I + N + A +
Sbjct: 252 LISKAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTA-----L 306
Query: 129 MEEDDTHFGVRVIEILNAQ 147
++ VRV ++ +
Sbjct: 307 PGAVGDNYAVRVTSVVREE 325
>gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum SS14]
gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
Length = 344
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K
Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303
>gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli]
Length = 173
Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
++S E + +PVK++ +L M + + L +I+L ++++I
Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIEIR 140
Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
+N GE+ +++ GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162
>gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum str. Nichols]
gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM
gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum]
gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 344
Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K
Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303
>gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
Length = 324
Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ + SD + ++ + + + +I V++ + + + + + ++ GD+I ++
Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMP- 286
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E V + N KG++ + E + V++ E A+
Sbjct: 287 -EFVTVRANGVPTFKGKLGVSNE---RYSVQMQESFKAK 321
>gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
Length = 334
Score = 40.2 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + LG+ + ++ + L GDVI L++ + E + + I
Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300
>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
Length = 321
Score = 40.2 bits (93), Expect = 0.098, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
+ +S ++ + I +PV++ ++ S M ++ ++ L GD++ + + + E D+ IN
Sbjct: 237 PPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM-RLL-ERCDVQIN 294
Query: 118 NQKIAKGEITIMEEDDTHF 136
QK+ +G I E+D + F
Sbjct: 295 QQKLFRG--AIFEDDGSLF 311
>gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
Length = 335
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
P+S ++ D +PV++ + L + L L GD + L
Sbjct: 237 AAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDALRLRH 296
Query: 107 RVGESVDITINNQKIAKG 124
+++ ++ A
Sbjct: 297 PAAAPLEVVVDGTCFAHA 314
>gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
Length = 331
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + + LG + I + + + GDVI LD+++ + + +
Sbjct: 260 LPLSVELGLTDITIEDFLTMQVGDVIQLDQKIEAPLLLKV 299
>gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
Length = 326
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +M PV++ + G + L++L GD++ L+ V E ++ I
Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQG 298
>gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus
HTA426]
gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
Length = 334
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + LG+ + ++ + L GDVI L++ + E + + I
Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300
>gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
MP5ACTX9]
gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
MP5ACTX9]
Length = 100
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 16/115 (13%)
Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
+SP + ++ + + +P L P + + +
Sbjct: 2 GTASPVSTTQQAAPQATIAVFKDPDPGKLVPWL-------------PCTLALEVSVVGFT 48
Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
+ +L+ L+KG ++ + + +N +A E ++ E R+ +++
Sbjct: 49 VGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVVGE---RLAARITDLV 100
>gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621]
gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621]
Length = 74
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I
Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKI 58
>gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
Length = 332
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
IS ++ E+ + + + LG + +S + LS GDVI+L+K + + +
Sbjct: 236 ISEKKASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLS 295
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
I + ++ G +++ V++ EI+
Sbjct: 296 IKVGDKLKFIGSPGTIKD---RVAVQIDEIV 323
>gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens
DSM 19672]
Length = 342
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 28/50 (56%)
Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
D++M + +++ +G + + +++ L +GD I + + E V + +NN
Sbjct: 254 LDILMEAYLPLKLEIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNN 303
>gi|218508017|ref|ZP_03505895.1| type III secretion system translocation protein [Rhizobium etli
Brasil 5]
Length = 52
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
L + +G V LD+ + ++VDI + I +GEI ++ VRV
Sbjct: 1 RTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGWS---AVRVT 48
>gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
Length = 333
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
+ + LG + I + L+ GDVI+L+K + + + I + +
Sbjct: 258 KLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKL 302
>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
Length = 331
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 57 DSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+ E + + + ++ + + ++ILG+ + + + +NL+ GDV+TL+++ + +++
Sbjct: 238 SSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVV 297
Query: 116 INNQK 120
I +
Sbjct: 298 IEERP 302
>gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter
woesei DSM 14684]
gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter
woesei DSM 14684]
Length = 322
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
V M+ +GS M I +++ L+ GD++ L + V + + I
Sbjct: 255 VTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAEDVPI 299
>gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum]
Length = 155
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K
Sbjct: 63 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 114
>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
Aspo-2]
gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
Aspo-2]
Length = 325
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +M PV+M I +G + L+ L +GD+I LD E ++ +
Sbjct: 250 ERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298
>gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 322
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
S E + ++ + + + + L + + +N G I L+K+ E +D+ +
Sbjct: 230 SEVSPEWRKELIKKLLKVNLNLTLELDKFSVLVEEFLNYEVGTEIILNKKQSEELDLKVE 289
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
++ K + + D F + +I+
Sbjct: 290 DKVKFKA---SIGKLDKKFAAMITKIIKE 315
>gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
Length = 368
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+P+ + + I++ +P ++ +L + +S L GDV+ L K +
Sbjct: 173 KPVPRSAEQGGADAAGPHAAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALD 232
Query: 111 SVDITIN-NQKIAKGEITIMEEDDTHFGVRVI 141
V+I +AKG M + + VR+
Sbjct: 233 RVEIIAGRGHMVAKGR---MGQLNGARAVRLT 261
>gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
Length = 333
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S D + E+ + I V + LGS + I+ + L GDV+ LD + +
Sbjct: 239 SVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGDVLQLDTLAQDELVC 298
Query: 115 TI 116
+
Sbjct: 299 YV 300
>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
3645]
gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
3645]
Length = 376
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 54 ISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ ++ + E+S ++ V++ + L + +L+ L GDVIT K E +
Sbjct: 260 FAYGTSEVSEESRQALSTQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPL 319
Query: 113 DITINN 118
+++N
Sbjct: 320 KVSVNG 325
>gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
HTCC2516]
gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
HTCC2516]
Length = 316
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 3 KKVSKISYIKDNLEGRSMHI-----DNPLQ----DTNVSSPTNNSEMLIQKNDVDNI--- 50
+++S++S+ D+LE I +P D V LI +D +
Sbjct: 150 RQLSEVSFEIDSLESAPETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDTVRPV 209
Query: 51 -SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
++P + + I + V + L + + + KG I L
Sbjct: 210 LNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISA 269
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ VD+ +++ +G+ + +R+IE
Sbjct: 270 EQPVDVVCGERRMFRGQ--MGRRATGQVALRLIE 301
>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
Length = 356
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V+ P + E + + D S+ +D + S D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + L+ L GD+I +D
Sbjct: 259 RAKLLETELTLRELMELRPGDIIPVD 284
>gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
Length = 317
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+++ +G C + L L G V+ ++ ++ IT + + +GE+ +
Sbjct: 251 LPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTLGQGELVEVN---G 307
Query: 135 HFGVRVI 141
+R+I
Sbjct: 308 KLAIRII 314
>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
255-15]
gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
255-15]
Length = 327
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
V ++ +LG + L++L GD ++L R + V++ ++++K+
Sbjct: 260 VDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKM 304
>gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D ++ ++D + I ++ + D + +++++ + + L+ L GDVI L++
Sbjct: 229 DQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLLALRVGDVIPLER 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E++ ++ + +G + ++ E L +
Sbjct: 289 P--ETLVARVDGIPVFRGP---YGVHGGKYAIQFHEALPPE 324
>gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803]
gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803]
Length = 74
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V I + N++I G+I
Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKI 58
>gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145]
gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145]
Length = 354
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +++ P + E + + D S+ +D + S D IM++PV+M
Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
L + + +++ +GD+I L+
Sbjct: 260 VAKLADVDVTLREVMDFEEGDIIPLE 285
>gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC
35405]
gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola]
gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC
35405]
gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402]
Length = 344
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
D + + V M +GS + I +++NL GDV+ L + RVG+ +T+ ++
Sbjct: 252 DKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDVVRLPNVRVGDPFKLTVGSRP 303
>gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 333
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S D + E+ + I V + LG + I+ + L GDV+ LD + +
Sbjct: 239 SMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGDVLQLDTLTKDELVC 298
Query: 115 TI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ N + +A+ V++ I+ +
Sbjct: 299 YVGSNPKFLAR-----PGTAGKRMAVQISGIIEGE 328
>gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a]
Length = 319
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + E+ + + + + +L + + +++NL D+I L+K + +
Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 286
Query: 111 SVDITI 116
+V + +
Sbjct: 287 NVQLKV 292
>gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
Length = 93
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-D 105
+D+ P S + D+F V+++ L + +S L + +G V+ L D
Sbjct: 1 MDDADTPAMSPTPAGSTFPADDFS------VQLRFELDQTDVPLSRLQAVQQGGVLPLQD 54
Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ V I + IA G+I + + +GV + +L
Sbjct: 55 RDGALPVRIIAGGRAIAAGQIVSVGDS---YGVLIETVLKE 92
>gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 346
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 8 ISYIKDNLEGRSMHIDNPLQD-----TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62
I L R+ HI PL T P E + Q V ++ + D
Sbjct: 209 IKITTPTLMLRASHIAFPLSLDQGVLTVADLPFPYQEQVSQTPSVPPVAHSVDDDPAPNE 268
Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ +PV++ ++++ L L GDV+ L+ G + I N + +
Sbjct: 269 SSPI----WVGELPVELSFAFEPLALKLAELSALRPGDVVPLE--SGVRLLIHANGRPVG 322
Query: 123 KGEITIME 130
+ E+ +E
Sbjct: 323 EAELVEVE 330
>gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
WA1]
gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
12563]
gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
WA1]
gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
12563]
Length = 343
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
+ + NI V+ LGS + +S+++NL KGDV+ D ++ + V I N+K
Sbjct: 255 EKLQNIFVETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRK 306
>gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
51599]
gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
51599]
Length = 349
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAKGEITIMEED 132
V++ L + + + L+ L GDVI ++ G + I N + E
Sbjct: 279 VELVAELTTATLTLGELMKLRTGDVIEIETGPGAMLKIGQVPIFNGR---------YGEH 329
Query: 133 DTHFGVRV 140
+ + VR+
Sbjct: 330 NGRYAVRI 337
>gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
Length = 331
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + E+ + + + + +L + + +++NL D+I L+K + +
Sbjct: 239 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 298
Query: 111 SVDITI 116
+V + +
Sbjct: 299 NVQLKV 304
>gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
Length = 81
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I
Sbjct: 13 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 65
>gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
str. F0430]
Length = 334
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S D + ++ D I V + LG+ + I+ + L GDV+ LD + +
Sbjct: 238 ASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELV 297
Query: 114 ITI 116
+
Sbjct: 298 CYV 300
>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
Length = 329
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
+Q +LG M + +++L GD++TL +V + + + + + K GEI I++ +
Sbjct: 261 NLQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNN 315
>gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
43160]
gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
43160]
Length = 321
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
+ ++ I + + + P ++ ++ + +SE + E +
Sbjct: 186 VASYTIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLT---Q 242
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+PV + + + +L++L+ GDV+ L +++T N A
Sbjct: 243 VPVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFAYA 292
>gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3]
Length = 319
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
S + E+ + + + + +L + + +++NL D+I L+K + +
Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITD 286
Query: 111 SVDITI 116
+V + +
Sbjct: 287 NVQLKV 292
>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
Length = 332
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
V + LG + I + + L GDVI L+KR+ + I +
Sbjct: 260 VPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPLTIKV 299
>gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
Length = 109
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
L + G V+ L V V++ +N Q A GE+ +E+ GV + E+
Sbjct: 52 KRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGELVQLED---RLGVELHEV 101
>gi|294675223|ref|YP_003575839.1| family 3 glycosyl hydrolase [Prevotella ruminicola 23]
gi|294471943|gb|ADE81332.1| glycosyl hydrolase, family 3 [Prevotella ruminicola 23]
Length = 823
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII-------- 82
++ + I ++ V + + EK +L ++I KM +
Sbjct: 13 AATMMQAQQPAIPRDAVLEAKIEKTLAKMTLDEKIGQMLELNLDIIGKMTVENAKVDREK 72
Query: 83 -------LGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
G +I +L+ ++ +I DK G VDI
Sbjct: 73 VRSVMQQYGRSEAEIKDLLKMTDQQII--DKLGGFPVDIY 110
>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
Length = 347
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST D IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI ++ E + + + M V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
Length = 334
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
S D + ++ D I V + LG+ + I+ + L GDV+ LD + +
Sbjct: 239 SVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELVC 298
Query: 115 TI 116
+
Sbjct: 299 YV 300
>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
HTE831]
gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
Length = 330
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
V+++ ILG+ + I + +N +GD+I+LD+ + +
Sbjct: 257 EVELKAILGATTISIHDFLNFQQGDIISLDQPIDAPL 293
>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
Length = 347
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST D IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI ++ E + + + M V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
5692]
gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
5692]
Length = 336
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL--DKRVGESVDITINNQKIAKGEIT 127
D +M + +++ + + I ++NL GD+I L D++ G+ V + + +
Sbjct: 255 DEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRV--LVEQKPKFQA--- 309
Query: 128 IMEEDDTHFGVRVI 141
+ VR+
Sbjct: 310 VAGTRKGKKAVRIT 323
>gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519]
gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii]
Length = 332
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + ++ D LE + + + ++G + + + L +GDVI L +
Sbjct: 235 FSTVKKELNEDDKGYLETRVKRAN------IDINAVVGDTYITVEEFIYLQEGDVIKLSR 288
Query: 107 RVGESVDITINNQ 119
++ E +++ + +
Sbjct: 289 KIDEDLELHVEGK 301
>gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
Length = 321
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S+ ++ ++ + N +LI N+ V + + + + +++ GD ITL V +
Sbjct: 230 SEVSDYVDYDSINKNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVN 289
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
I G ++ ++ V+++++L+ +
Sbjct: 290 IEGMLKMYG---VLGRSNSKKAVKILKLLDNK 318
>gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 326
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +M PV++++ G + + L+ + GD++ LDK + +D T+
Sbjct: 250 ERLMETPVELKVCFGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAG 298
>gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293]
gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293]
Length = 79
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I
Sbjct: 11 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 63
>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
Length = 334
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
V + L + L+ + GD I LD+ E + +I I + + ++
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310
Query: 135 HFGVRVIE 142
+ +R+ E
Sbjct: 311 KYAIRIEE 318
>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
Length = 347
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ D IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALRDEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI ++ E + + + M V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
GB8 horse 4]
gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
GB8 horse 4]
Length = 160
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + ++ D+ + D + +
Sbjct: 38 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 88
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 89 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 145
Query: 136 FGVRV 140
GVR+
Sbjct: 146 LGVRI 150
>gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
Length = 74
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V I + N++I G+I
Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKI 58
>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 334
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
V + L + L+ + GD I LD+ E + +I I + + ++
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310
Query: 135 HFGVRVIE 142
+ +R+ E
Sbjct: 311 KYAIRIEE 318
>gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus
thermodenitrificans NG80-2]
gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
Length = 334
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ + LG+ + + + L GDVI L + + E + + I
Sbjct: 261 LPIVAELGTAVVTVGEFLQLEVGDVIQLKQSIHEPLVVKI 300
>gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH
391-98]
Length = 74
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G +I +L++++KG + L+ +V + + N++I G+I
Sbjct: 6 DIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKI 58
>gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
cereus G9241]
gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
W]
gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
NVH0597-99]
gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
03BB108]
gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH1134]
gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
H3081.97]
gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
G9842]
gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH820]
gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102]
gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273]
gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271]
gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603]
gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3]
gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
cereus G9241]
gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L]
gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus
weihenstephanensis KBAB4]
gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
W]
gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
03BB108]
gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
NVH0597-99]
gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH1134]
gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
H3081.97]
gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH187]
gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
B4264]
gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH820]
gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
G9842]
gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102]
gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3]
gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603]
gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271]
gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273]
gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 74
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
+IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I
Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 58
>gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium
chlorophenolicum L-1]
gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium
chlorophenolicum L-1]
Length = 299
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+I + + +L + ++ L+ L GDVI + + S+ + + ++ +A G + E D
Sbjct: 224 DIRLPARTVLARPDLSLAELMQLKAGDVIPVT--INRSLPLIVGDRIVAHG---TIGEQD 278
Query: 134 THFGVRVIEILNAQ 147
++ +I Q
Sbjct: 279 GRAAFQIEKISGNQ 292
>gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
Length = 328
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + P+++ + +G+ + ++ L+NLS GD + L++ + + +
Sbjct: 250 EELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELLVKVGG 298
>gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58]
gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58]
Length = 295
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+I + + +L + +++L+ L GDVI + +G ++ + + N+ +A G + E D
Sbjct: 225 DIRLPARTVLARPNLSLADLMELKVGDVIPVT--IGRALPLIVGNRIVAHG---TIGEQD 279
Query: 134 THFGVRV 140
++
Sbjct: 280 GRAAFQI 286
>gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 14]
Length = 177
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + P + + + + D + +
Sbjct: 55 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 105
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 106 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 162
Query: 136 FGVRV 140
GVR+
Sbjct: 163 LGVRI 167
>gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1]
Length = 326
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ +M PV++++ G + + L+ L GDV+ LD + +++TI
Sbjct: 250 ERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAG 298
>gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
Length = 317
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 52 EPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
+P S + N ++I + V + L + + ++ +G V+ L V +
Sbjct: 214 QPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQ 273
Query: 111 SVDITINNQKIAKGEITIME---EDDTHFGVRVIEILNAQ 147
V + + E+ + + + +++ E L +
Sbjct: 274 PVSLICSGH-----EMYMAQTGKRKNGRMALKITEQLKDE 308
>gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 7894]
Length = 174
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
D P SSP + + + ++ D+ + D + +
Sbjct: 52 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 102
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
+ + + + + + I+ L L G V+ L + V + Q I G + + H
Sbjct: 103 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 159
Query: 136 FGVRV 140
GVR+
Sbjct: 160 LGVRI 164
>gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
ferrooxidans DSM 10331]
Length = 302
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 26/53 (49%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
+ ++ +++ + + L+ L+ GDV+ L R G+ + ++ ++ +
Sbjct: 228 LHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAWVIVDRTRLHRA 280
>gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
Length = 330
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
++ + EK ++ + + +K+ ILG + + +++L GDVI L + V
Sbjct: 233 FTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRLQTHKDDDV 292
Query: 113 DITINNQK--IAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ + ++ +A+ + H V+V IL +
Sbjct: 293 MVEVQSKPKFMARPGV-----FKGHRAVKVTRILKPE 324
>gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
Length = 359
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
E+ IQ N+ D S D ++ +N I +++ G + + L ++ +
Sbjct: 258 EVFIQMNEDDTRLHFGSDDLSDTSGLEEENLPPHEQIELEIHA--GKTKILFNELCSVQE 315
Query: 99 GDVITLDKRVGESVDITINNQKIAKGEIT 127
G +I L + V + + I +GE+
Sbjct: 316 GTLIELREHALPMVTLCVMGSPILEGELV 344
>gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
Length = 344
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
D + + + + +G + + ++++L GDVI L D VG+ +++ N+K
Sbjct: 252 DKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDVIRLKDTHVGDPFTLSVGNRK 303
>gi|323166472|gb|EFZ52236.1| surface presentation of antigens family protein [Shigella sonnei
53G]
Length = 162
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
S+SN E + + L +I VK+ IL M I+ L + ++ + + V+
Sbjct: 72 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVN 131
Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
I +N + GE+ +E+ +G+ +
Sbjct: 132 IKVNGSLVGHGELVSIEDG---YGIEISS 157
>gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 325
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ ++ PV++++ +G+ + + L+ L GDV+ LD V + ++ T+
Sbjct: 250 ERLLETPVELKVRMGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAG 298
>gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium
1_7_47_FAA]
gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium
1_7_47FAA]
Length = 296
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 7 KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
++ + D L R +M + P + S + +K D + ++LE
Sbjct: 172 ELEVVIDKLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLES- 230
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
V+++ IL + +++ L+ GDVI L+K+V + I + +
Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVED 273
>gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
Length = 332
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ +D + + I V + LGS + I + ++L GDVI L++ + +++
Sbjct: 236 MQTDKKEREPEVIARLERNIHKAEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQAL 295
Query: 113 DITINN 118
I + N
Sbjct: 296 IIKVGN 301
>gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
51449]
gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
51449]
Length = 353
Score = 37.9 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 34/64 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
SD+++ ++ + LI V + LG + + +++L GD++ LD +++ ++
Sbjct: 238 SDTSSKKSRNKELQALIAGANVIVSGYLGDATLTLKEILDLQVGDIVRLDTIADDTIIVS 297
Query: 116 INNQ 119
++ +
Sbjct: 298 VDGR 301
>gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio
parahaemolyticus]
gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
10329]
Length = 71
Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ + + +++ C M + L++L KG++I +D V V + N+ IA G + +++
Sbjct: 1 MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDD--- 57
Query: 135 HFGVRVIEI 143
+GV + +
Sbjct: 58 QYGVSIDNV 66
>gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
Length = 334
Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V++ L M I +++N+ GDV+ L+ + ES++ ++ + + +
Sbjct: 256 EVEIVADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVM---LCKYGMFNGQ 310
Query: 136 FGVRVIEILNA 146
+ +RV ++L +
Sbjct: 311 YALRVEKLLRS 321
>gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
Length = 328
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
P+++ + +G+ + + L+NL+ GD I L+ R + + +
Sbjct: 256 PLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELLVKVGG 298
>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 349
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + +L+ L GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284
>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 349
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + +L+ L GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284
>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 349
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + +L+ L GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284
>gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis
EO147]
Length = 326
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
P + + ++ P + T + D + PV ++ +L + ++
Sbjct: 212 EPLSEDAIDDLHDERAAAEAPQDAPPPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQ 268
Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
L + G V+ + GE V I N + GE+ + E
Sbjct: 269 LASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 307
>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
profundum SS9]
Length = 348
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + D + S + IM++PV +
Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ L + + +L+ L GD+I +D V ES + + + + + M + + ++
Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313
Query: 140 VIE 142
+ +
Sbjct: 314 ITQ 316
>gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 323
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
N E S I PLQ S S M D D EK I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRTWREKLER---AI 253
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
++IP+ + L + + L+ + GDV+ + ++ E+V + + N+ I +G + E
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQIQPGDVLPV--QLTEAVSLLVENEPIFEG---VPGER 308
Query: 133 DTHFGVRVI 141
+ +
Sbjct: 309 GGQAALNLT 317
>gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus
nasoniae]
Length = 234
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 50 ISEPISSDSN--NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ +P++SD + N +S+ + + +K+ IL ++ + + G + L+
Sbjct: 135 LEQPVTSDQDDHNASPESSTAIFDLNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSD 194
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + IN Q AKGE+ + E V + +L+ +
Sbjct: 195 AHCAIALEINGQIFAKGELIQVGE---QLAVELHTLLSTE 231
>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
Length = 348
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + D + S + IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ L + + +L+ L GD+I +D V ES + + + + + M + + ++
Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313
Query: 140 VIE 142
+ +
Sbjct: 314 ITQ 316
>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 356
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V+ P + E + + D S+ +D + S D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + L+ L GD+I ++
Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284
>gi|260775668|ref|ZP_05884564.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608084|gb|EEX34253.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 106
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIP--------VKMQIILGSCCMQISNLVNLSK 98
+D + S DS +L S ++ ++P V + + +G + +S +
Sbjct: 1 MDGQDDVKSEDSALLLGGSDEHLSSESDMPNDQTGRITVNLGLEIGRVRLPLSEWAQVGP 60
Query: 99 GDVITLDKR-VGESVDITINNQKIAKGEITIM 129
G V+ L VGE+ +A GE+ +
Sbjct: 61 GSVLMLSGVGVGEAYLTDAEG-VVAYGELVDV 91
>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 356
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V+ P + E + + D S+ +D + S D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
+ L + + L+ L GD+I ++ E++ + + + + M + ++
Sbjct: 259 RAKLLETDLTLRELMELKPGDIIPVEMP--ENLLVYVEDLPTFHAK---MGRTKDNVALK 313
Query: 140 VIE 142
+ +
Sbjct: 314 ITD 316
>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
Length = 356
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V+ P + E + + D S+ +D + S D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + L+ L GD+I ++
Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284
>gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
Length = 324
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + + SD +++ ++ + I + V++ L + + L+++ GD+I ++
Sbjct: 229 EQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPIN- 287
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ E+V + + + + +G+ + D ++V +
Sbjct: 288 -LPETVTLKVEDIPLFRGKFGV---SDGKNAIQVTD 319
>gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
PRL-20]
gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
PRL-20]
Length = 100
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
+ + + + + + + + I+ L L G V+ L + V + Q I G + +
Sbjct: 24 LGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 83
Query: 131 EDDTHFGVRV 140
H GVR+
Sbjct: 84 ---AHLGVRI 90
>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
Length = 332
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D + + SD +++ E+ + I ++ V + + + + ++ L +GD+I ++
Sbjct: 225 DVLDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVE- 283
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ E + +T N + K M D +R+ +
Sbjct: 284 -IPELLTLTANGIPVYKA---TMGTRDGKLALRIHD 315
>gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
Length = 329
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+ + L + L+ + GD I LD+ +++T+ + + + +
Sbjct: 257 EITLVAELARADATVEQLLAMKTGDFIELDRPSR--IEVTVEGVPVFECQ---YGTHNAK 311
Query: 136 FGVRV 140
+ +R+
Sbjct: 312 YAIRI 316
>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
JL354]
Length = 339
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I+ V++ +LG M+++++ +L G I D + ++ +A+ + +
Sbjct: 264 ILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQ---IGR 320
Query: 132 DDTHFGVRVIEILN 145
H + +++ +
Sbjct: 321 QRNHVAIGIVDTIK 334
>gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
Length = 349
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST + IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
++ L + + +L+ L GD+I ++
Sbjct: 260 RVQLLEQDISLRDLMELQPGDIIPIN 285
>gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 347
Score = 37.1 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S + IM+IPV +
Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSRALREEIMDIPVNI 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + +L+ L GD+I +D
Sbjct: 259 RAKLLDVDLTLRDLMELQVGDIIPVD 284
>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
4028]
gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
4028]
Length = 325
Score = 37.1 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
D +M PV M + G+ + L+++ GD++ LD+ + + I+
Sbjct: 250 DRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGRIHGIL 300
>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
Length = 319
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I VK++ IL M + +L NL G VI L V + N+Q + ++ +
Sbjct: 236 IQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQL---GQ 292
Query: 132 DDTHFGVRVIEILNAQ 147
+ + +++ E+++ +
Sbjct: 293 LNGSYTLQIDELIHEE 308
>gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
SSM1]
gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
SSM1]
Length = 333
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
L+ +I V ++ +LG + +++L GD I L+K+ + +NN
Sbjct: 255 LLEDIFVDVEAVLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNN 302
>gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
Nor1]
gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
Nor1]
Length = 334
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ V + + LG + + +L++L+ GDV+ L+ R GE++++
Sbjct: 257 LQRTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFD--------------GELSVIIG 302
Query: 132 DDTHF-----------GVRVIEIL 144
F V++ E++
Sbjct: 303 QREKFKCKPGLVGGKVAVQITEVM 326
>gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
15053]
gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
15053]
Length = 336
Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
++++ L + + + L GDVI L+K V + + Q +G++ + +
Sbjct: 264 MEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESDVVLYVEEQPWFRGKL---GAHNKNA 320
Query: 137 GVRVIEILNAQ 147
V++ + + +
Sbjct: 321 AVKIKQCIQEE 331
>gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
Length = 323
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + SD ++ E+ + I+++ V + + +++ +++++ GDVI ++
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ E+V + N K + + ++V+E + Q
Sbjct: 286 -LPENVVMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322
>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
Length = 336
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPI-----SSDS 58
++ Y++ + + +I P + T+ S ++ + ++ EPI S+
Sbjct: 176 ELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQ 235
Query: 59 NNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ L + L+ V++ LG+ + + ++VN+ GDVI L +V E +
Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPL--QVSELLQA 293
Query: 115 TINNQKI 121
T++ +
Sbjct: 294 TVDGVPV 300
>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
Length = 327
Score = 37.1 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 57 DSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
S +T N + +PV++ +++G + + ++L GDV+ LD+R GE +D+
Sbjct: 237 PSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDVLVLDRRFGEDLDVY 296
Query: 116 I 116
+
Sbjct: 297 V 297
>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
Length = 367
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI V + ILG + ++ +NL +GD++ LD+ + +TI+ + E+ + E
Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKK-----EVFLAE 307
Query: 131 EDDTHF--GVRVIEILNA 146
F +R+ E++ +
Sbjct: 308 VGLHRFRKSIRIEELIRS 325
>gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
Length = 330
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+++ LG + + ++N+ +GDVI LD + ++V N I
Sbjct: 261 EIEIIANLGHTRVTLHQILNMQEGDVIALD--IPDTVVAMANGVPI 304
>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 125
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+L + ++ L + + +++L V +V+I N + GE+ M + GV +
Sbjct: 1 VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDT---LGVEIH 57
Query: 142 EILNA 146
E L+
Sbjct: 58 EWLSE 62
>gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
MLHE-1]
Length = 395
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ + SD N + E+ T + M V++ +L + + +++N+ GD+I ++ +
Sbjct: 229 LDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVE--L 286
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
E+V + + + +G + +++ E + +
Sbjct: 287 PEAVKVYAEDMPVFRGR---YGVRHGNTAIKITERIQPR 322
>gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
fetus 82-40]
gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
fetus 82-40]
Length = 363
Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
LI V + ILG + ++ +NL +GD++ LDK + + I+ +
Sbjct: 254 LIGRAEVLYEAILGRTVISVNEFLNLQEGDILRLDKSADDKAIVCIDKK 302
>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
Length = 350
Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 50 ISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ + SD + E+ + + I+++PV++ L + I ++ L GD+I ++
Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIE 285
>gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii
ATCC 33641]
gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii
ATCC 33641]
Length = 307
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAK-------GE 125
++P + + +G + + + L+ G + + GE V+I ++ Q + GE
Sbjct: 236 DLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGE-VNIRLHGQPVGSGSLLSCDGE 294
Query: 126 ITI 128
+ +
Sbjct: 295 LVV 297
>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
Length = 356
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V+ P + E + + D S+ +D + S D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
+ L + + L+ L GD+I ++
Sbjct: 259 RAKLLETDLTLRELMELRPGDIIPVE 284
>gi|333017444|gb|EGK36760.1| surface presentation of antigens family protein [Shigella flexneri
K-227]
Length = 102
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+I VK+ IL M I+ L + ++ + + V+I +N + GE+ +E+
Sbjct: 32 DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90
Query: 134 THFGVRVIE 142
+G+ +
Sbjct: 91 --YGIEISS 97
>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
Length = 357
Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
D IM++PV + +L + + +++ + GD+I ++ E + + I + +G++
Sbjct: 248 DEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKL--- 302
Query: 130 EEDDTHFGVRVIE 142
+ VR+ E
Sbjct: 303 GRKGDNVAVRIEE 315
>gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 409
Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + L M + +L L+ G L V +T+ + + G + +
Sbjct: 337 VTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLV---DLGGTL 393
Query: 137 GVRV 140
GV+V
Sbjct: 394 GVQV 397
>gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4]
gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4]
Length = 348
Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI +D E+ + I + + M + V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIDMP--ENATMFIEDLPTYR---VKMGRSEDKLAVQ 314
Query: 140 VIE 142
V E
Sbjct: 315 VSE 317
>gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
Length = 353
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 34/64 (53%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
+++++ ++ + L+ V + LGS + + +++L GD I L+K ++V +
Sbjct: 238 TETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTIRLNKVANDTVVVN 297
Query: 116 INNQ 119
I+ +
Sbjct: 298 IDKK 301
>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 325
Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+++IP+KM L + +S L+ L +GDV + ++G+ V++ ++ + GE M E
Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGE---MGE 310
Query: 132 DDTHFGVRVIE 142
+ +
Sbjct: 311 VGGQSAINLTS 321
>gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
Length = 323
Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ + SD ++ E+ + I+++ V + + +++ +++++ GDVI ++
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ E+V + N K + + ++V+E + Q
Sbjct: 286 -LPENVIMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322
>gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
DSM 13479]
gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
DSM 13479]
Length = 295
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
++ V+++ I + +++ L GDV+ L+K+V S+DI + +
Sbjct: 226 LLESEVELRAIFHEFSLDAQDILQLQPGDVVPLNKKVDSSIDIYVED 272
>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
Length = 322
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + + +++++ GDVI ++ +G+S+ + N
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LGDSLVLRANG 296
>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
DFL-11]
gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
DFL-11]
Length = 319
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
I VK++ IL M + L NL G VI L V + N+Q I ++ +
Sbjct: 236 IQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQL---GQ 292
Query: 132 DDTHFGVRVIEILNAQ 147
D + +++ E+++ +
Sbjct: 293 LDGSYTLQIEELIHEE 308
>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
Length = 349
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
++ L + + +L+ L GD+I +D
Sbjct: 260 RVNLLEKDVSLRDLMELQAGDIIPID 285
>gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium
violaceum ATCC 12472]
gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium
violaceum ATCC 12472]
Length = 290
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
+ + + + + + + + L NL G +++ V + ++ IA+G + +
Sbjct: 221 LGDAMITVTVEVAKMELPLHQLGNLQPGTLLSSAVSSDGLVTLKAGSRPIARGTLL---D 277
Query: 132 DDTHFGVRV 140
D+ VR+
Sbjct: 278 IDSRLAVRI 286
>gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli
95/1000]
gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli
95/1000]
Length = 343
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESV 112
+ + NI V+ LGS + +S+++NL KGDV+ + ++ + V
Sbjct: 255 EKLQNIYVETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPV 298
>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
Length = 712
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPV 77
+ N + P ++ + +++N++ + + I + + F+LI + V
Sbjct: 113 PQALPNAAAENTPPLPEEVADPKMSAKELENLTPYTNIPNPRPITGQIAELFELIQDPSV 172
Query: 78 KMQIILGSCC-MQISN 92
++ +++G +Q+
Sbjct: 173 ELSVVVGRGKVIQLRE 188
>gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter
versatilis Ellin345]
gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter
versatilis Ellin345]
Length = 329
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 25/48 (52%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
++ P + + L +++ L+ L GD++ L + ++++++ +
Sbjct: 250 LLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR 297
>gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia
stuttgartiensis]
Length = 318
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
++ + I+ + N E+ + +P+ + ILG+ + + L+NL GDVI+L
Sbjct: 221 ATLEAVMGKITEATLNREEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISL 280
Query: 105 DKRVGESVDITI 116
D ++ + + + I
Sbjct: 281 DNKITDHLSLEI 292
>gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
Length = 334
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
V + L + L+ + GD I LD+ E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290
>gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000]
gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum]
gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000]
gi|1097281|prf||2113360G hrpQ gene
Length = 354
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
PL D + + P + + P+ + +PV + L
Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
M ++ L L V+TL ++ + SV + + Q + G++ + E G+++ I
Sbjct: 291 VMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVGE---QLGLQIASI 347
>gi|333008532|gb|EGK28001.1| surface presentation of antigens family protein [Shigella flexneri
K-218]
Length = 102
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
+I VK+ IL M I+ L + ++ + + V+I +N + GE+ +E+
Sbjct: 32 DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90
Query: 134 THFGVRVIE 142
+G+ +
Sbjct: 91 --YGIEISS 97
>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
Length = 334
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
V + L + L+ + GD I LD+ E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290
>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
Length = 349
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST + IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVI 102
++ L + + +L+ L GD+I
Sbjct: 260 RVDLLEQDISLRDLMELQPGDII 282
>gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
Length = 350
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 17 GRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIM 73
G+ + +D PL ++ E + N + ++E ++++ + + + D +
Sbjct: 216 GQRITVDGPLSRHHLVLVEQGWGCERIESVNGMSELAEQVNAEQTAEAGAEEIGSID-LS 274
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV---GESVDITINNQKIAKGEITIME 130
+ V ++ + + I+ L + + G ++ +D V + ++IAKG + ++
Sbjct: 275 QMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQID 334
Query: 131 EDDTHFGVRVI 141
E +R+
Sbjct: 335 E---RVALRIS 342
>gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
K601]
gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
K601]
Length = 334
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
V + L + L+ + GD I LD+ E + A E + E
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306
Query: 132 -DDTHFGVRV 140
+ + +R+
Sbjct: 307 THNAKYAIRI 316
>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
Length = 334
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
V + L + L+ + GD I LD+ E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290
>gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans
BC]
gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
BC]
Length = 334
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
V + L + L+ + GD I LD+ E + A E + E
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306
Query: 132 -DDTHFGVRV 140
+ + +R+
Sbjct: 307 THNAKYAIRI 316
>gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
BAA-613]
gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
BAA-613]
Length = 296
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 7 KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
++ + + L R +M + P + S + + +K D D ++LE
Sbjct: 172 ELEVVIEKLRARINMVMPAPNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLES- 230
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
V+++ IL + +++ L+ GDVI L+K+V +V + + +
Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLAPGDVIPLNKKVDSAVSLYVED 273
>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
Length = 368
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+
Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEV---G 310
Query: 131 EDDTHFGVRVIEILNA 146
+R+ E++ +
Sbjct: 311 LHRFRKSIRIEELIRS 326
>gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
DSM 6946]
gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
DSM 6946]
Length = 353
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
LI V + I+G + + L+ L KGD++ LD+ + + I+ +++ EI
Sbjct: 252 LISRAEVFNEAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEI 307
>gi|46410122|gb|AAS93912.1| RPP13-like protein [Arabidopsis arenosa]
Length = 605
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 6/41 (14%), Positives = 20/41 (48%)
Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
+L + + L+K E +++ +N+ K + ++++
Sbjct: 233 SLGETSEVELEKMAEEELEVYLNDILQGKKYLVVVDDIWEK 273
>gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159]
gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159]
Length = 668
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 91 SNLVNLSKGDVITLDKRVGESVDI--------TINNQKIAKGEITIMEEDDTHFGVRV 140
+++ L +G V+ DK + VD+ + A+G++ + F VR+
Sbjct: 155 KSILALRRGQVVRRDKILRHLVDLQYDRNDMTLVRGTFRARGDLIEVFPAYEEFAVRI 212
>gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2]
gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2]
Length = 326
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
++I+ V +++ LG+ + L+ L GDVI LD + + ++ +G
Sbjct: 252 EIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYVDGLPKVRG 306
>gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 348
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GD+I ++ E + + + + M + V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
Length = 322
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + +++ +++++ GDVI ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285
>gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
Length = 354
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 34/126 (26%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
PL D + + P + + P+ + +PV + L
Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290
Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKGEITIMEEDDTHFG 137
M ++ L L V+TL V D+T+ Q + G++ + E G
Sbjct: 291 VMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHGQLVAVGE---QLG 341
Query: 138 VRVIEI 143
+++ I
Sbjct: 342 LQIASI 347
>gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
Length = 334
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 47 VDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + S N ++ N + ++ N PV + ++ + + +++ L GD++
Sbjct: 200 IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARLRLPLRDILALKPGDLLPFQ 259
Query: 106 KRVGESVDITINNQKIA-KGEITIMEEDDTHFGVRVIEILN 145
+ + + Q + +G I E G+R + +++
Sbjct: 260 R------ETLNDTQLVGTRGHIVATAELGQMNGLRALRLIS 294
>gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28]
Length = 85
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
EP + + S D NI V + + LG M + ++ LS GDV+ ++K
Sbjct: 13 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64
>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
Length = 322
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVSVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + +++ +++++ GDVI ++
Sbjct: 259 LSATVARRQLKLRDVLHMQPGDVIPVE 285
>gi|225851080|ref|YP_002731314.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1]
gi|225645615|gb|ACO03801.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1]
Length = 106
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
NIP+ + I L S + +S++ + + I + ++ + V++ +N + I KG ++ +D
Sbjct: 38 NIPLPVVIRLMSRDIPVSDIDRIGETTEILVSEKEEKDVELLVNGEIIGKG---VVFKDS 94
Query: 134 THFGVRVIEI 143
+++ ++
Sbjct: 95 GSLKLKITDL 104
>gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
Length = 348
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GD+I ++ E + + + + M + V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|94984419|ref|YP_603783.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300]
gi|94554700|gb|ABF44614.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300]
Length = 1063
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
P SE+L + DV +++ D + E +T+N P +++ L ++I +
Sbjct: 133 PGERSEVLQGRIDVADLAAATPLDLAAVAEMATEN-------PGTIKLPLAGSVIRIRDR 185
Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAK 123
+ + ++ +GE+ D+T+N + +
Sbjct: 186 IT------VEVEAPLGETADLTVNGVPVGR 209
>gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella
chejuensis KCTC 2396]
gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella
chejuensis KCTC 2396]
Length = 252
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
K+ + L S + I+ + +L GDVI LD ++ E +
Sbjct: 187 KLSVRLNSVELTINEVTSLQAGDVIKLDHKLTEPALVF 224
>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
Length = 322
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
M + +++ +++++ GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285
>gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
43969]
gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
43969]
Length = 303
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
+D E + + E FD + + VK+ +LG + + L ++ G V L
Sbjct: 193 DDTPEAEETLPRLDEVLPENVPRPFD-VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYEL 251
Query: 105 DKRVGESVDITIN 117
V I N
Sbjct: 252 GADKDREVKIYAN 264
>gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
Length = 349
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ-------IILGSCCMQISNLV 94
I N ++ +S ++SD+ + +K + + +N+ + + L + + ++
Sbjct: 224 IPFNTIEPLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVL 283
Query: 95 NLSKGDVITLDKRVGESVDITINNQKI 121
NL+ GDVI +K +S+ + + +
Sbjct: 284 NLAVGDVIMCNKGSAQSLTVELEGSPV 310
>gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
Length = 322
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
M + +++ +++++ GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285
>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
Length = 322
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
M + +++ +++++ GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285
>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
Length = 366
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
LI V + ILG + +S ++L +GD++ LD+ + + I+ +++ E+
Sbjct: 255 LIGRAEVLYEAILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEV 310
>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
Length = 334
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
V + L + L+ + GD I L++ E + A E + E
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELER---EP-------RIRASIEGVPVFECQYG 306
Query: 132 -DDTHFGVRVIE 142
++ + +R+ E
Sbjct: 307 THNSKYAIRIEE 318
>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
Length = 456
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
++DN++ + + + S L + + +S + + N ++ +
Sbjct: 184 LRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLS 243
Query: 71 LIMNIPVKMQII-LGSCCMQISNLVNLSKG----DVITLDKRVGESVDITINNQKIAKGE 125
I +Q LG +L++L I D+ E D+ I +++A G
Sbjct: 244 RIYGEVTDIQAEFLGYVLQSSRHLLSLINDILDLSKIEADRMELEPSDVDI--RQLASGS 301
Query: 126 ITIMEEDDTHFGVRVIEILNA 146
+ +++E +R+ E +
Sbjct: 302 LVMVKERAQQHRIRLTEEVAP 322
>gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 334
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
++ Y + ++ + +I P + T+ + I + + EPI + +
Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQ 235
Query: 64 KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ D I V + L + L+ + KGD I LD+ +
Sbjct: 236 GDSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPR--IQA 293
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140
T++ I + + ++ + +R+
Sbjct: 294 TVDGVPIFECQ---YGTHNSKYAIRI 316
>gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
Length = 331
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D I+ + ++ + ++ + + ++ +L M ++ L+ L GDVI ++
Sbjct: 234 DQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVN- 292
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
+ ++V + + N++ A+G + E D + +
Sbjct: 293 -LSQTVPLLVGNRRFAEG---TIGEQDGRAALMI 322
>gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
Length = 428
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ + K D+ D PV + + L ++ S+L++L+ GD+IT ++ ++++
Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337
Query: 115 TI 116
++
Sbjct: 338 SV 339
>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
Length = 334
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
V + L + L+ + GD I LD+ E + +I I + + ++
Sbjct: 257 EVTLVAELAQADATVEQLLAMKPGDFIELDR---EPRIRASIGGVPIFECQ---YGTHNS 310
Query: 135 HFGVRVIE 142
+ +R+ E
Sbjct: 311 KYAIRIEE 318
>gi|225568550|ref|ZP_03777575.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM
15053]
gi|225162778|gb|EEG75397.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM
15053]
Length = 736
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 90 ISNLVNLSKGDVITLDK---RVGESVDITINNQKIAKGEITIMEEDDTHF 136
+ ++++ V+ L K + GES DI +N KI +GE +++ F
Sbjct: 462 LKDIIDAHCFSVVMLTKIFRQAGES-DIVVNAHKINRGEEVVLDNKSRDF 510
>gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47]
Length = 428
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
++ + K D+ D PV + + L ++ S+L++L+ GD+IT ++ ++++
Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337
Query: 115 TI 116
++
Sbjct: 338 SV 339
>gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
K279a]
gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas
maltophilia K279a]
Length = 334
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ I SD N+ E +NI V + +L S M + +L L GD++ ++
Sbjct: 228 LDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
V + N + GE I + V++
Sbjct: 288 QVPV--CVENIPVFTGEFGIANGMN---AVKIT 315
>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
WM1]
gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
WM1]
Length = 339
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
D N + + + I + ++ +G + + ++ NL GDVI L V +
Sbjct: 244 GDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLY 303
Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIE 142
+ Q +G++ + + VR+ +
Sbjct: 304 VEGQPWFRGQLGV---HKRNVAVRIED 327
>gi|1066861|gb|AAB81317.1| Complete gene sequence under accession number M24465 [Salmonella
enterica subsp. enterica serovar Typhimurium]
Length = 32
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
IA+GE+ ++ + +GVR+ +I+
Sbjct: 1 IAQGEVVVVAD---KYGVRITDIITP 23
>gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 360
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
E + N + + V + +G +S L + +G TL+ + V ++ ++ I
Sbjct: 276 SESTIRNKSIEHPLEVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTI 335
Query: 122 AKGEITIMEEDDTHFGVRVIE 142
G ++ + G+R++E
Sbjct: 336 GTG---VLMNFNGVIGIRILE 353
>gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
Length = 334
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDV--ITLDK 106
+ I SD N+ E +NI V + +L S M + +L L GDV I L+
Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTRLKVGDVLPIELNP 287
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ V + + N + GE I + V++
Sbjct: 288 Q----VPLCVENIPVFTGEFGIANGMN---AVKIT 315
>gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587]
gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39]
gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587]
gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39]
Length = 71
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+ + + +++ C M + L++L KG+++ ++ V +V + N+ IA G + +++
Sbjct: 1 MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDD--- 57
Query: 135 HFGVRVIEI 143
F V + +
Sbjct: 58 QFAVSIDNV 66
>gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 320
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
S T +++ + ++ + S D E+ + + + +G + I +
Sbjct: 210 SDTESNDFSYKAPSDEDAPDASSPDVIPEFEEEPKKIS-LNEFTQTLVMEIGRINIPIQD 268
Query: 93 LVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
L L G + GE V I +N +KI G + D VR+
Sbjct: 269 LNQLFVGKTLNCKTSFYGE-VMIRLNGRKIGSGNLL---NCDGELIVRI 313
>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
stutzeri DSM 4166]
Length = 279
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 46 DVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
D + + E S + + + N D I ++PV++ ++ + M ++ ++ L D++ L
Sbjct: 182 DTELVDELTSRLAGPPVPRLPGNPIDHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML 241
Query: 105 DKRVGESVD---ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+D + IN QK+ +G + E+D + +E +N Q
Sbjct: 242 -----RPLDRYEVRINQQKLFRG---TIFEEDGALFLTSLESVNPQ 279
>gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
Length = 349
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST + IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVI 102
++ L + + +L+ L GD+I
Sbjct: 260 RVNLLEQDISLRDLMELRPGDII 282
>gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
Length = 322
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
M + +++ +++++ GDVI ++
Sbjct: 259 MSATVARRQLKLRDILHMQPGDVIPVE 285
>gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
Length = 1291
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
P V+S E++ + V + S+ ++S +++ + ++ ++PV +G
Sbjct: 387 PATAGEVTSLVPLPEVVGEILGVGSKSKAVASQVTSLVSRLGPELGILGDVPVSAIAEVG 446
Query: 85 SCCMQISNLVNLSKGDVITLDKRVG 109
S + + + L +G+VI ++ G
Sbjct: 447 SAEL-VEAISRLRRGEVI---RQAG 467
>gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 332
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 63 EKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
EK N + + ++ I+G + + + + + GDVI L+K+V E +++ + +
Sbjct: 244 EKGKKNLESNVKKAKLEAVAIIGDTFITVEDFIFMQVGDVIKLNKKVDEELELKVAGK 301
>gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
Length = 321
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
+ + P S E NF+ + ++ +L + ++ + + G + LD
Sbjct: 218 EPLPLPQPSPDETWSEAMVRNFEKSG---LHLEAVLARKQVPLAEVAHFRVGQTLALDVM 274
Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
V E + + + I K ++ + R E ++
Sbjct: 275 VSELITLECEGKPIFKSQV---GFSRGSYVARFEEAVDP 310
>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
Length = 349
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST + IM++PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVI 102
++ L + + +L+ L GD+I
Sbjct: 260 RVNLLEQDISLRDLMELQPGDII 282
>gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046]
Length = 331
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
+ +++ I + + + + + + LGS + I + + ++ GDVI L +++ +
Sbjct: 236 MQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDVIPLKQKIENPL 295
Query: 113 DITI 116
+ +
Sbjct: 296 TLKV 299
>gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
BAA-450]
Length = 351
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + ST + IM++PV
Sbjct: 206 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 261
Query: 80 QIILGSCCMQISNLVNLSKGDVI 102
++ L + + +L+ L GD+I
Sbjct: 262 RVNLLEQDISLRDLMELQPGDII 284
>gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25]
gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
Length = 322
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + +++ +++++ GD+I ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDIIPVE 285
>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
ATCC 25259]
gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
ATCC 25259]
Length = 334
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLD 105
V++ LG+ + + ++VNL GDVI LD
Sbjct: 257 EVEIVADLGTAEVSLRDIVNLKVGDVIPLD 286
>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
Length = 326
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D I SD +++ E+ D + V+
Sbjct: 207 IELDGGGGDLHVTMPYSMIEPMRELLDAG-----IQSDRSDVDERWIRALRDEVKAAEVE 261
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ +L + + +++ L GD+I +D + E V + + +G+ + + + +
Sbjct: 262 LSSMLTETTLSLEDVMRLKPGDIIPID--LPEQVLLRAEGIPVLRGKFGVSDGYN---AI 316
Query: 139 RVIE 142
+V E
Sbjct: 317 KVTE 320
>gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
KT]
gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
KT]
Length = 335
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-----NISEPISSDSNNI 61
+ YI+ + + +I P + V S T N E+ ++ ++ EPI +
Sbjct: 175 EFEYIRSEMNTQFANIATP--NEVVVSTTFNIELGSASGEIHFCFPYSMIEPIRDLLTSP 232
Query: 62 LEKSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
L+ D I + V + L M + +++N+ GDVI L + E +
Sbjct: 233 LQGEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPL--SISEEI 290
Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+ ++N + + + + + +RV ++L +
Sbjct: 291 EAKVDNVPVMQCK---YGVFNGQYALRVEKLLRS 321
>gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
Length = 322
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWSKALREDVLDVAVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + +++ +++++ GDVI ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285
>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
19624]
gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
19624]
Length = 331
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V + L + L+ + GD I L+++ ++ TI+ + + + + +
Sbjct: 258 VTLVAELARANTTVEELLAMKVGDFIELERQPR--IEATISGVPVFECQ---YGTHNAKY 312
Query: 137 GVRV 140
+R+
Sbjct: 313 AIRI 316
>gi|114764585|ref|ZP_01443789.1| hypothetical protein 1100011001360_R2601_26946 [Pelagibaca
bermudensis HTCC2601]
gi|114542961|gb|EAU45981.1| hypothetical protein R2601_26946 [Roseovarius sp. HTCC2601]
Length = 175
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIM 73
++ P + N P + D + P + ++L T N
Sbjct: 4 KSKINEPGPKAEDNAPKPAAEA-PRAPSGDFKPSTPPKAKPPASVLSSDLHITGNLKTTG 62
Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
+I V+ + G ++L+ + + I + D+ IN + + +
Sbjct: 63 DIQVEGTVE-GDIR---AHLLTIGESATIKGEVVAD---DVVINGRIVGR 105
>gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila
LSv54]
gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea
psychrophila LSv54]
Length = 323
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
+ G + + +++ L GD++ +D + + + + N G I +
Sbjct: 260 DITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLVENSPKFYG---IPGTHNGKKA 316
Query: 138 VRVIE 142
+ + E
Sbjct: 317 ISLTE 321
>gi|85711955|ref|ZP_01043009.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145]
gi|85694141|gb|EAQ32085.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145]
Length = 314
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG----ESVDITINNQKIAKGEI 126
++ ++ V I G+ + + L+ + V K ++ ++N I GE
Sbjct: 37 MLGDVEVT-AISDGTTELPVHQLLQMDADKVRE--KLAEFYRQSPLETSVNAYLINDGES 93
Query: 127 TIMEED--DTHFGVRVIEIL 144
I+ + + FG + ++
Sbjct: 94 LILIDTGAGSMFGASLGNLV 113
>gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia
solanacearum PSI07]
gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum PSI07]
Length = 355
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130
+ + V + + L M +S L L V+TL K +V + + Q + G++ +
Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338
Query: 131 EDDTHFGVRVIEI 143
E G+++ I
Sbjct: 339 E---QLGLQIASI 348
>gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
Length = 347
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI ++ +V + + + M + + V+
Sbjct: 260 RVNLLEKDISLRDLMELRPGDVIPIE-MPKHAV-MFVEELPTYR---VKMGQSNEKLAVQ 314
Query: 140 VIE 142
+ E
Sbjct: 315 ISE 317
>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
HP15]
Length = 332
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D + + SD +++ E+ + + I + V + + + + ++ + GD+I ++
Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVE- 283
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ E + +T N I K + D +R+ E
Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHE 315
>gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP
102972]
gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP
102972]
Length = 256
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
PV++ ++L M +S+++ L+ D++ +D V I
Sbjct: 189 PVRLNVLLSKKTMPLSDVLRLTPNDILPIDLLSTVPVSI 227
>gi|149914719|ref|ZP_01903249.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b]
gi|149811512|gb|EDM71347.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b]
Length = 183
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--- 65
+ K + + ++P Q S+P +++ ++ S P + ++L
Sbjct: 1 MFSKSKINDPAPKAEDPRQ---TSTPDRSADTSYSGSEFKA-SAPKAKPPASVLSADLHI 56
Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV--DITINNQKIAK 123
T N +I V+ + G ++L+ + +G I GE V D+ IN + + +
Sbjct: 57 TGNLKTTGDIQVEGTVE-GDIR---AHLLTVGEGATIK-----GEIVADDVVINGRIVGR 107
>gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
Length = 367
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
LI V + ILG + ++ +NL +GD++ LD+ + + I+ +++ E+
Sbjct: 255 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEV 310
>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
Length = 315
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+++P + + + + I + V + +L + + ++ G VI L
Sbjct: 204 AQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGM 263
Query: 107 RVGESVDITINNQKI 121
V V +N Q +
Sbjct: 264 TVDTPVVGMVNAQPM 278
>gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114]
gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 382
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ E SS+S S + +M + ++ +L + +S + L G +++
Sbjct: 191 KAVPERQSSESETADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPA 250
Query: 107 RVGESVDIT-INNQKIAKG 124
ESV++ I ++A+G
Sbjct: 251 NAFESVELLSIEGARVARG 269
>gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
Ellin6076]
gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
Ellin6076]
Length = 293
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
+ + +L++L +G+++T D V +++ +N G++
Sbjct: 217 TLSVGDLLSLREGNLLTFDFPVERPIELVVNGACKFTGQVV 257
>gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
RM3195]
gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
JV21]
gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
RM3195]
gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
JV21]
Length = 360
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
LI V + ILG + ++ + L +GD++ LD+ + ++I+ +
Sbjct: 254 LIGRAEVVYEAILGKTLINVNEFLELKQGDILRLDREADDKAVVSIDKK 302
>gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
Length = 116
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI-------PVKMQIILGSCC 87
TN + L + + P DS E T + L I P++++I L
Sbjct: 3 TNTTTALEETTSSTALLAPAQGDSPLEAEAETASLSLRRTIEERVTQAPLRLEIRLPIRG 62
Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+++ +++ L KG + E + Q++ E ++++ VRV
Sbjct: 63 LRVKDVLALRKGAIFETQWPADEDIPGDCGGQQLVWAEFEVIDK---KLAVRVT 113
>gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
JA2]
gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
JA2]
Length = 334
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
++ Y + ++ + +I P + T + ++ + + EPI + ++
Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQ 235
Query: 64 KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+ D I V + LG + L++ GD I LD
Sbjct: 236 GDSAEPDRRWVNLLKHQIQAAEVDLVAELGHAPATVEQLLSFKPGDFIELD 286
>gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 242
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 124 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 178
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + + +++++ GDVI ++ + ES+ + N
Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 216
>gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv.
citri str. 306]
gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 337
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
Length = 337
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116]
gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116]
Length = 348
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
++ L + + +L+ L GDVI ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285
>gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
R551-3]
gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
R551-3]
Length = 334
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ I SD N+ E +NI V + +L S M + +L L GD++ ++
Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287
Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
+ + N + GE I + V++
Sbjct: 288 QVPL--CVENIPVFTGEFGIANGMN---AVKIT 315
>gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum CFBP2957]
gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum CFBP2957]
Length = 355
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130
+ + V + + L M ++ L L V+TL K +V + + Q + G++ +
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338
Query: 131 EDDTHFGVRVIEI 143
E G+++ I
Sbjct: 339 E---QLGLQIASI 348
>gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 337
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 70
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFG 137
M + + + + I+ L L G V+ L + V + Q I G + + H G
Sbjct: 1 MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLG 57
Query: 138 VRV 140
VR+
Sbjct: 58 VRI 60
>gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
Length = 363
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
LI V + +LG + ++ ++L +GD++ LD+ + + I+ + E+ + +
Sbjct: 255 LIGRAEVIYEAMLGKTFINVNEFLDLKQGDILKLDRSADDKAIVAIDKK-----EVFLAQ 309
Query: 131 EDDTHF--GVRVIEILNA 146
F ++++E++
Sbjct: 310 VGLHRFRKSIKILELIKT 327
>gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
Length = 348
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
++ L + + +L+ L GDVI ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285
>gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
Length = 343
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+P+ ++ ++G + + L L GD I L + I A+G++ D+
Sbjct: 239 MPLTLEAVVGEIDLTLGRLEQLRPGDKIPLTISRDLPL--RIGETVFARGKV---GRLDS 293
Query: 135 HFGVRVI 141
+ +RV
Sbjct: 294 NLALRVT 300
>gi|301764120|ref|XP_002917494.1| PREDICTED: LOW QUALITY PROTEIN: stromal membrane-associated protein
1-like [Ailuropoda melanoleuca]
Length = 403
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLI 72
E D ++ +SP +E I + +D +E P+++ S + D+ D I
Sbjct: 158 TTEKLQKTEDQQMELKKSTSPKKAAEPTIDLSGLDGPAEAPVTNGSTTTGQAPNDDLD-I 216
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
+P+ + L + +++ LSK ++
Sbjct: 217 FGVPLDLFTELATKSKEVAK-KQLSKDSIL 245
>gi|50557178|ref|XP_505997.1| YALI0F28589p [Yarrowia lipolytica]
gi|49651867|emb|CAG78809.1| YALI0F28589p [Yarrowia lipolytica]
Length = 454
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
IK +++ K+ + + L D + + E K + P+S+ +
Sbjct: 113 IKGSYELATGKEMVSRDPKVLKAELADALLKWKAVDFETEAAKRRL-----PVSAVRSYS 167
Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
N DL+ + PV + S + ++ + LS V+ L++ + + + +
Sbjct: 168 EWDEDKNVDLL-DFPVTITKTGDSSVIPLNGPLALSGEKVLELNRVIAAP----VCGKVL 222
Query: 122 A 122
A
Sbjct: 223 A 223
>gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
HB-1]
gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
HB-1]
Length = 347
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 6/47 (12%), Positives = 23/47 (48%)
Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
+ ++ +++ + L + +++ +GD + LD G+ + + +
Sbjct: 241 EKLLKTNLRVWLELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYV 287
>gi|153854475|ref|ZP_01995753.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
gi|149753001|gb|EDM62932.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
Length = 738
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 13 DNLEGRSMHIDNPLQDT------NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
+ NP +T N +P ++I +++ + P+ N + T
Sbjct: 385 QTIHRLLEVSGNPDDETIGGFQRNAENPLEADVVII--DEMSMVDLPLMYALLNAIVPGT 442
Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK---RVGESVDITINNQKIAK 123
L+ ++ + GS + ++++ V+ L K + GES DI +N KI +
Sbjct: 443 RVI-LVGDVNQLPSVGPGSV---LKDIISSECFSVVKLTKIFRQAGES-DIIVNAHKINR 497
Query: 124 GEITIMEEDDTHF 136
GE +++ F
Sbjct: 498 GEPVVLDNKSMDF 510
>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
str. 301020]
gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 322
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + + +++++ GDVI ++ + ES+ + N
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 296
>gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
Length = 323
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIMEED 132
I V++ ++ + NL+ G VI +D E + + + IA+G+
Sbjct: 256 IDVELCGVVSLLETSLRNLLAFKVGTVIPID----EPQTAQLMVEGRGIARGK---YGAH 308
Query: 133 DTHFGVRVIEILNAQ 147
D+ V++ + ++
Sbjct: 309 DSSRAVQITDFSRSK 323
>gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 272
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
PV++ ++L M +S ++ L+ D++ +D V I
Sbjct: 205 PVRLNVLLSKKTMPLSEVLRLTPNDILPIDLLSTVPVSI 243
>gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
Length = 458
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 50 ISEPISSDSNNILEKSTDNFDLIM-NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
+ EP + + + M N+ ++ +L + ++ L NL GDVI L++
Sbjct: 201 LPEPTPEELGLAGAAAGPSLGSSMGNLRAELSAVLCKMRLPLNELSNLKPGDVIPLEQAF 260
Query: 109 GESVD-ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
D I+I Q IA+G++ + + VR+ E
Sbjct: 261 LYETDLISIGGQSIAQGKL---GQMNGSRAVRLNE 292
>gi|187920207|ref|YP_001889238.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN]
gi|187718645|gb|ACD19868.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN]
Length = 277
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
G+ M++ P + + SE + + + + + I ++ D L+ +I
Sbjct: 59 GKGMNVTAPFKLKAFAMADERSE----RAQLAGAANALKFEDGRIAAENFDGVGLVRDIE 114
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V + + + + + +G ++ V++ I N+ +AK E +
Sbjct: 115 VNLDLPMAGKRVLVLGAGGAMRGALLPF--LAARPVELVIANRDVAKAEALV 164
>gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
Length = 327
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
I +++ +L + + +++L+ L G VI L E V + ++N +A+G
Sbjct: 255 IELEVAGVLATQSIALADLLELEAGAVIPL--APAEQVSLKVDNVTLAEG 302
>gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
19718]
gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
19718]
Length = 330
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLD 105
+++ LG + + ++N+ +GDVI LD
Sbjct: 261 EIEIIANLGQTQVTLHQILNMQEGDVIALD 290
>gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
Length = 334
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSS-------PTNNSEMLIQKNDVDNISEPISSDSN 59
++ Y + ++ + +I P + +S T I ++ I + + S +
Sbjct: 176 ELEYQRSEMQPQFANIAAPGEIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQ 235
Query: 60 NILEKSTDNFDLIMN-----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ + +M V++ L + L+ L GD I LD +S+++
Sbjct: 236 GDSAEPDRRWVKLMTHQIQAAQVQLVAELAHAPATVEQLLALKAGDFIELDLI--KSIEV 293
Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
++ + + + + + ++V +L Q
Sbjct: 294 KVDGVPVMEAQ---YGTSNGKYALKVDRMLTNQ 323
>gi|322435511|ref|YP_004217723.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9]
gi|321163238|gb|ADW68943.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9]
Length = 1516
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM---NIP 76
+D P D + +P I + ++ I++ + + L+ P
Sbjct: 1254 QPVDGPPLDESWVAPAL---AAIAEGKAYSVEAQIANCDRAVGARLAGEIALLRAQAETP 1310
Query: 77 VKMQIIL-GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
V + + L G+ + +G V+ LD + + V + ++ GE+ I
Sbjct: 1311 VDVSLKLHGTAGQSFGAFL--VEGMVLELDGQANDFV-----GKGLSGGEVVI 1356
>gi|323456061|gb|EGB11928.1| hypothetical protein AURANDRAFT_20268 [Aureococcus anophagefferens]
Length = 1143
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQI------ILGSCCMQISNLVNLSKGDVITLDKR 107
I++ S N + + D + + PV + + L S + + +++ L+ GDV+ D R
Sbjct: 229 IAAASENAANGALEALDALSS-PVSVAVRDGEEVELDSTQLVVGDVILLATGDVVPADCR 287
Query: 108 VGESVDITINNQKIAKGE 125
V + D+ +N + GE
Sbjct: 288 VVRAADLKVNEMLL-TGE 304
>gi|47222360|emb|CAG05109.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1228
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
++ +++ D P ++ VS P ++ +EP+ D LE+ DL+
Sbjct: 258 DVTEETLYGDFPDENAAVSGPAAPAQSADPACPPG--TEPLEEDERQALEEYEKMQDLLK 315
Query: 74 NIPVKMQI-ILGSCCMQISNLVNLSKG 99
I + + + +G + + +KG
Sbjct: 316 TIGLDLGVAEIGRMAARTKERLQGNKG 342
>gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines]
gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines]
Length = 304
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
+ + + + + + +Q+ + + +S L L G ++ L V ++ + + +
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
Q I G + + E H GV+++ + +
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299
>gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
Length = 362
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
V++ + L + +++ L GD+IT DK + ++I +
Sbjct: 272 KVELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQG 314
>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
SV96]
gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
SV96]
Length = 331
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 45 NDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
+ + + ISSDS + ++ V + +L M I +++ L KGDVI
Sbjct: 234 EPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIP 293
Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
+D ++V + + +G++ D ++ +++I+ + +
Sbjct: 294 IDMP--DTVILKAEGIPVFEGKV---GISDGNYAIQIIDKVKS 331
>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
Length = 349
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D ++ P + E + + D S+ + +D + ST + IM++PV
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
++ L + + +L+ L GDVI + K +V + + + + M V+
Sbjct: 260 RVNLLEMDIALRDLMELQVGDVIPI-KMPEHAV-MFVEDLPTYR---VKMGRSGEKLAVQ 314
Query: 140 VIEILN 145
V E +
Sbjct: 315 VSEKIK 320
>gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
20546]
gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
20546]
Length = 272
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAK-GEITIME 130
PVK+ ++L M +S+L++L D++ ++ V I N K G++ ++
Sbjct: 205 PVKLNVLLSQKRMPLSDLLSLQANDILPIELLSTVPVSIGDQHLFNGSVAEKEGQLVLII 264
Query: 131 EDD 133
D
Sbjct: 265 NHD 267
>gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609]
gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609]
Length = 362
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124
+ + V + + L M ++ L L V+TL V D+T+ Q + G
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 339
Query: 125 EITIMEEDDTHFGVRVIEI 143
++ + E G+++ I
Sbjct: 340 QLVAVGE---QLGLQIASI 355
>gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551]
gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551]
Length = 355
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124
+ + V + + L M ++ L L V+TL V D+T+ Q + G
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 332
Query: 125 EITIMEEDDTHFGVRVIEI 143
++ + E G+++ I
Sbjct: 333 QLVAVGE---QLGLQIASI 348
>gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
Length = 358
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
LI V + ILG + + + L +GD++ LD+ +
Sbjct: 253 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 292
>gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
doylei 269.97]
Length = 359
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
LI V + ILG + + + L +GD++ LD+ +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293
>gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
Length = 322
Score = 34.1 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
V++ + + + +++ GD+I +D + E + + N KG++ + E +
Sbjct: 256 VELSAAVAHVDVPLQDVLKFKAGDIIPVD--IPEFITVRANGLPTIKGKLGVSNE---KY 310
Query: 137 GVRVIE 142
V+V+E
Sbjct: 311 SVQVVE 316
>gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 244
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 154 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 208
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 209 LTTTIAQRQLPLRDILHMRPGDVIPVE 235
>gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 304
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
+ + + + + + +Q+ + + +S L L G ++ L V ++ + + +
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273
Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140
Q I G + + E H GV++
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293
>gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
414]
Length = 359
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
LI V + ILG + + + L +GD++ LD+ +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293
>gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81116]
gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 1336]
gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 1336]
gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni M1]
gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni S3]
gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 305]
gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 327]
Length = 359
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
LI V + ILG + + + L +GD++ LD+ +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293
>gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
2210633]
gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AN-5034]
gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
Peru-466]
gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ4037]
gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus]
gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
2210633]
gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
Peru-466]
gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AN-5034]
gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ4037]
gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329]
Length = 348
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +V P + E + + D S+ + +D + S+ + IM+ PV
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
++ L + + +L+ L GD+I ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIE 285
>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
Length = 332
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D + + SD +++ E+ + + I + V + + + + ++ + GDVI ++
Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVE- 283
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
+ E + +T N I K + D +R+ +
Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHD 315
>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 337
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GDV+ ++ + + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 304
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
+ + + + + + +Q+ + + +S L L G ++ L V ++ + + +
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
Q I G + + E H GV+++ + +
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299
>gi|331232871|ref|XP_003329097.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308087|gb|EFP84678.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 893
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
+ + S + PLQ + ++SP + Q D +S PIS S + +
Sbjct: 165 EPSRHSFSSELPAPLQLSPINSPQAQEDRQDQTRTFDPVSSPISRKSQSQGVIELGS-SP 223
Query: 72 IMNIPVKMQIILGSCCMQISN 92
+++IP M ISN
Sbjct: 224 LVDIPSSFT----KARMPISN 240
>gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. 8004]
gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 337
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae 642]
Length = 322
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
+ + + + +++++ GDVI ++ + +S+ + N
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSDSLVLRANG 296
>gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 304
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
+ + + + + + +Q+ + + +S L L G ++ L V ++ + + +
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273
Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140
Q I G + + E H GV++
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293
>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
Length = 342
Score = 34.1 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D+ D +V+ P + E + + D SD ++ E+ + I+++ V
Sbjct: 223 IELDSGGGDLHVTMPYSMIEPIREMLDAG-----FQSDVSDQDERWVKALREDILDVNVP 277
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
+ + +++ +++N+ GDVI ++ E + + N K + + +
Sbjct: 278 LGATVVRRQLKLRDILNMQPGDVIPVEMP--EDMIMRANGMPAFK---VKLGAHKGNLAL 332
Query: 139 RVIE-ILNAQ 147
+V+E ++ +
Sbjct: 333 QVLEPVVRPR 342
>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
Length = 348
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVD 113
V + L S + +++++ L GDV I +DK + VD
Sbjct: 256 EVDLVASLASTQLTVADIMELRIGDVIPIEIDKVIEARVD 295
>gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB
48]
gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB
48]
Length = 387
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI------TINNQKIAKG 124
++++ +L M +S ++NL G+ I L+ +++ N + KG
Sbjct: 309 MEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKG 362
>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 252
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 134 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 188
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 189 LTTTIAQRQLPLRDILHMRPGDVIPVE 215
>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 322
Score = 34.1 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285
>gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688]
gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688]
Length = 334
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
V++ L MQ+ +++N+ GDVI L+ + E+++ ++N +
Sbjct: 256 EVELVANLAKARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPV 299
>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae B728a]
gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae FF5]
gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae B728a]
gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 322
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285
>gi|147679239|ref|YP_001213454.1| putative aminopeptidase 1 [Pelotomaculum thermopropionicum SI]
gi|146275336|dbj|BAF61085.1| aspartyl aminopeptidase [Pelotomaculum thermopropionicum SI]
Length = 470
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 75 IPVKMQIILGSCCMQISNLV-NLSKGDV--ITLDKRVGESVDITINNQKIAKGEI----- 126
+PV + G IS+L+ +L+K + D GE ++I +A GE+
Sbjct: 163 VPVVIGERPGEPVFTISDLLPHLAKDQMEKKMADAVSGEGLNILAGGMPVAGGEVKERFK 222
Query: 127 -TIMEEDDTHFGVRVIEILNAQ 147
++++ + +G+ ++++A+
Sbjct: 223 LAVLDQLNRLYGITEEDLISAE 244
>gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
Length = 382
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
+ E +S+ + S + +M + ++ +L + +S + L GD +++
Sbjct: 191 KAVPERHNSEGESAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPS 250
Query: 107 RVGESVDIT-INNQKIAKG 124
+SV++ I +IA+G
Sbjct: 251 NAFDSVEVLSIEGARIARG 269
>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato T1]
gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato Max13]
gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato K40]
gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato T1]
gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 322
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285
>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 322
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285
>gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus
ATCC BAA-450]
gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus
ATCC BAA-450]
Length = 271
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
PVK+ ++L M +S L++L DV+ ++ V I
Sbjct: 205 PVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI 243
>gi|296445666|ref|ZP_06887621.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b]
gi|296256911|gb|EFH03983.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b]
Length = 233
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
+ +L +G +I +D+ +GE VDI +G + I + RV + +A+
Sbjct: 151 PVDDLTAWRRGRLIFVDRPLGEVVDILARYH---RGYVVIAGDALRRL--RVTGVFDAK 204
>gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
43063]
gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
51333]
gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
43063]
gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
51333]
gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 306
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
++ L D ++ P + I + DV + + + D + ++P
Sbjct: 179 PITLTAGEHLDDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHL--VDTLEDVP 236
Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
+ + + + L L+ GD + L +D+ + + +A
Sbjct: 237 IGVAVRFTPRNVNPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILA 282
>gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
EF01-2]
gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
EF01-2]
Length = 334
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
V + L + L+ L GD I L+++
Sbjct: 257 EVVLVAELARADATVEQLLALKPGDFIELERQ 288
>gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans]
Length = 304
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIME 130
+ + + +Q+ + + +S L L G ++ L V ++ + + + Q I G + +
Sbjct: 227 VAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVYGQTIGIGRLVTVG 286
Query: 131 EDDTHFGVRV 140
E H GV++
Sbjct: 287 E---HLGVQI 293
>gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f]
gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f]
Length = 1157
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
D L R+ P +V+S E++ + V S+ ++S ++ + ++
Sbjct: 311 DTLADRTEST-RPETAGDVTSLVALPEIVGEILGVGPKSKAVASQVTTLVSRLGPELGIL 369
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
++P+ +GS + + + L +G+VI ++ G
Sbjct: 370 SDVPLDAIAEVGSPTL-VEGIGRLRRGEVI---RQAG 402
>gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 337
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|167949200|ref|ZP_02536274.1| hypothetical protein Epers_22951 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 113
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 35 TNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLIMNIPVKMQI----------IL 83
+E L +++ + + P + + + + T + D I+++PV + +
Sbjct: 16 DEWAEALEEQSGSEGGANLPAVNGAEDEDDAETVSLDAILDVPVIISTGDRPHQDQHPQV 75
Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGES 111
S + + V+ LD+ GE
Sbjct: 76 CSSSI---------RDSVVELDRLAGEP 94
>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
TAC125]
gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
[Pseudoalteromonas haloplanktis TAC125]
Length = 363
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +++ P + E + + D S+ +D L S D IM++ V++
Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVEL 260
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
L + + ++ L GD+I ++
Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286
>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 337
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. B100]
gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris]
Length = 337
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
19865]
gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
19865]
Length = 337
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
V + +L S M + L L GD++ +D + + + GE + ++
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312
Query: 136 FGVRVIEI 143
V++ +
Sbjct: 313 -AVKITAV 319
>gi|332360787|gb|EGJ38593.1| hypothetical protein HMPREF9380_1192 [Streptococcus sanguinis SK49]
Length = 642
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
K L S P Q ++PT ++ + ++P + S+ E +T
Sbjct: 200 GKWVLVKDSADTTTPAQPEQPTTPTEPAQPEVPAPTPAEPAQPTPAPSDRPAEPTTP 256
>gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
Length = 333
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 25/157 (15%)
Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
++ Y + ++ + I P + T+ + ++ I EPI + ++
Sbjct: 176 ELEYQRSEMQPQFATIAAPSEIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQ 235
Query: 64 KSTDNFD------LIMNI---PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
+ D L I V + L + L+ L GD I LD +D
Sbjct: 236 GDANEPDRRWVKLLTQQIQAAEVDLVAELAQAPATVEQLLALKPGDFIELD------LDQ 289
Query: 115 TINNQKIAKGEITIME----EDDTHFGVRVIEILNAQ 147
++ + + + + + + +++ ++L Q
Sbjct: 290 VVHAKVDG---VPVFDCHYGTSNGKYAIKIDQLLTNQ 323
>gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
propionicus DSM 2032]
gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
propionicus DSM 2032]
Length = 345
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
+ + ++ G M I ++ L GD+I L + + + +Q +
Sbjct: 266 LEMESQVIARSGLITMTIRRILGLQPGDIIDLQYDPDRPLTVLVEDQPL 314
>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
Length = 322
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%)
Query: 10 YIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
YI + +I P + VS+ + + ++ EP+ + +
Sbjct: 178 YINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDL 237
Query: 67 DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
D+ D ++++ V + + +++ +++++ GDVI ++ E + + N
Sbjct: 238 DDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMP--EDMIMRAN 295
Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
K M + ++VIE + +
Sbjct: 296 GVPAFK---VKMGSHKGNLALQVIEPIERR 322
>gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 222
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 104 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 158
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 159 LTTTIAQRQLPLRDILHMRPGDVIPVE 185
>gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
5305]
gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
5305]
Length = 368
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 42 IQKNDVDNISEPISSDS------NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
I N ++ ++ +SSD+ I + ++ I V + L + S L+
Sbjct: 225 IPFNTIEPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELM 284
Query: 95 NLSKGDVITLDKRVGESVDITINNQK 120
NL GDVI ++ V + + I + +
Sbjct: 285 NLDVGDVILTERDVKKGLTIFVEGKP 310
>gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 216
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
+ +D D +V+ P + E + + D SD ++ E+ + + ++++ V
Sbjct: 98 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 152
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105
+ + + + +++++ GDVI ++
Sbjct: 153 LTTTIAQRQLPLRDILHMRPGDVIPVE 179
>gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
Length = 352
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
+S++ ++L + +N D+++ +G +++ +++L KGDVI L+ +D
Sbjct: 253 TTSENLDVLREKLENTDMLL------VAEIGEVKLKVREILSLEKGDVINLE---DSPID 303
>gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
Length = 336
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
D +S + SD N++ ++ + + + + PV++ L + + L+ L GD+I ++
Sbjct: 229 DVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEM 288
Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
E+V + + +G + + V++ E
Sbjct: 289 P--ETVVLRAAEVPVLRGRL---GCSGGNVAVKITE 319
>gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
Length = 332
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGEITIMEED 132
V++ L ++NL GDV+ LD +G++V ++ + G
Sbjct: 257 EVELTADLAEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYG------IF 308
Query: 133 DTHFGVRVIEILNA 146
+ + +RV ++ A
Sbjct: 309 NGQYALRVNRMIGA 322
>gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
Length = 331
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
+PV ++ + + + GDVI +D E + N I +G++ + D
Sbjct: 255 VPVHGTVV--DREISLREVAAFQPGDVIPVDMP--EDFILQANGTPIFRGQLGV---RDD 307
Query: 135 HFGVRVIEILNAQ 147
+ V++ E + +
Sbjct: 308 NLAVKIKEPIKRK 320
>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
3776]
gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
3776]
Length = 375
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNF-------DLIMNIPVKMQIILGSCCMQISNLV 94
I N ++ +S +SSD+ + +K + D + VKM + L + +L
Sbjct: 231 IPFNTIEPLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLA 290
Query: 95 NLSKGDVITLDKRVGESVDITINN 118
+L+ GDVI + + +++ +
Sbjct: 291 HLAVGDVIMTEHPKEDGLEVVVEG 314
>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
ANT/505]
Length = 363
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
+ +D D +++ P + E + + D S+ +D L S D IM++ V M
Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVDM 260
Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105
L + + ++ L GD+I ++
Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286
>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
Length = 395
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
M LG + I +L +L GDVI L+K +V + + Q G++ + ++ + +
Sbjct: 280 MTGQLGVVKLDIEDLYHLKVGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKK---NIAI 336
Query: 139 RVIE 142
R+ +
Sbjct: 337 RIED 340
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.154 0.419
Lambda K H
0.267 0.0471 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,695,985,257
Number of Sequences: 14124377
Number of extensions: 128163221
Number of successful extensions: 302143
Number of sequences better than 10.0: 2295
Number of HSP's better than 10.0 without gapping: 3225
Number of HSP's successfully gapped in prelim test: 521
Number of HSP's that attempted gapping in prelim test: 297247
Number of HSP's gapped (non-prelim): 4331
length of query: 147
length of database: 4,842,793,630
effective HSP length: 110
effective length of query: 37
effective length of database: 3,289,112,160
effective search space: 121697149920
effective search space used: 121697149920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.7 bits)