RPSBLAST alignment for GI: 254780688 and conserved domain: TIGR02551

>gnl|CDD|162918 TIGR02551, SpaO_YscQ, type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. Length = 298

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 40  MLIQKNDVDN--ISEPISSDSNNILEKSTDNFDLI-MN-IPVKMQIILGSCCMQISNLVN 95
            LI     DN  +S+   ++S +           + ++ +PV ++  LG   + ++ L  
Sbjct: 197 ELIDGITADNLDLSDLTDTESPDE---PAAPTPEVDLDQLPVTLEFELGRLTLTLAELAA 253

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           L  G V+ L+  V   V +  N + + +GE+  +       GVR++E+
Sbjct: 254 LQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGG---RLGVRILEL 298