RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] (147 letters) >1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} (A:) Length = 84 Score = 70.5 bits (173), Expect = 9e-14 Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 D + ++ + + + G + ++ L L G ++ + + Q +A Sbjct: 3 MDPQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVA 62 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ +E G+++ ++ Sbjct: 63 EGELVDVEG---RLGLQITRLVT 82 >1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} (A:20-96) Length = 77 Score = 60.4 bits (147), Expect = 1e-10 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+K+ + LG + ++ G +I LDK GE VDI +N + IA+GE+ +++E + Sbjct: 1 PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDE---N 57 Query: 136 FGVRVIEILNAQ 147 FGVR+ EI++ + Sbjct: 58 FGVRITEIVSPK 69 >1zdv_A Outer membrane usher protein FIMD; beta sheet, alpha helix, membrane protein; NMR {Escherichia coli} (A:) Length = 115 Score = 26.5 bits (58), Expect = 1.4 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 111 SVDITINNQKIAKGEITIMEEDDT 134 VDI +NN +A ++T D Sbjct: 10 RVDIYLNNGYMATRDVTFNTGDSE 33 >3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein AF_135, structural genomics, PSI-II, dimer; 2.30A {Archaeoglobus fulgidus dsm 4304} (A:) Length = 142 Score = 26.6 bits (59), Expect = 1.5 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 103 TLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + K G+ V I +N Q I +E+ ++V Sbjct: 72 EILKGRNGKEVTIYLNKQTATVSRINFCDENAVLSPIKVT 111 >3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal domain; usher, N-terminal domain, ternary complex with chaperone and pilus subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli K12} (D:28-125) Length = 98 Score = 25.7 bits (56), Expect = 2.8 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 111 SVDITINNQKIAKGEITIMEEDDT 134 VDI +NN +A ++T D Sbjct: 7 RVDIYLNNGYMATRDVTFNTGDSE 30 >1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} (A:) Length = 222 Score = 25.0 bits (54), Expect = 4.0 Identities = 3/38 (7%), Positives = 11/38 (28%) Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + VN G + + + ++ + + Sbjct: 136 AEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEK 173 >2j44_A SPNDX, alkaline amylopullulanase; virulence, glycogen binding, carbohydrate-binding module; HET: GLC; 2.1A {Streptococcus pneumoniae} (A:1-106) Length = 106 Score = 25.2 bits (55), Expect = 4.1 Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 13/92 (14%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +DV+ SE + + + + D++ +++ +K + + IS L+N Sbjct: 25 DDVEKPSENWPNGALSFKDAKKDDYGYYLDVKLKGE---QAKK--ISFLIN--NTA---- 73 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 K + D ++ E + ++ Sbjct: 74 GKNLTG--DKSVEKLVPKMNEAWLDQDYKVFS 103 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.131 0.351 Gapped Lambda K H 0.267 0.0643 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 972,525 Number of extensions: 37437 Number of successful extensions: 71 Number of sequences better than 10.0: 1 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 18 Length of query: 147 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 66 Effective length of database: 2,217,844 Effective search space: 146377704 Effective search space used: 146377704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.2 bits)