RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor
switch protein [Candidatus Liberibacter asiaticus str. psy62]
         (147 letters)



>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system,
           phytopathogenicity; 2.29A {Pseudomonas syringae} (A:)
          Length = 84

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
               D    + ++ + + +  G   + ++ L  L  G ++ +         +    Q +A
Sbjct: 3   MDPQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVA 62

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+  +E      G+++  ++ 
Sbjct: 63  EGELVDVEG---RLGLQITRLVT 82


>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C-
           terminal proteolytic fragment of TM0680A, structural
           genomics, JCSG, PSI; 1.85A {Thermotoga maritima}
           (A:20-96)
          Length = 77

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+K+ + LG     +  ++    G +I LDK  GE VDI +N + IA+GE+ +++E   +
Sbjct: 1   PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDE---N 57

Query: 136 FGVRVIEILNAQ 147
           FGVR+ EI++ +
Sbjct: 58  FGVRITEIVSPK 69


>1zdv_A Outer membrane usher protein FIMD; beta sheet, alpha helix,
           membrane protein; NMR {Escherichia coli} (A:)
          Length = 115

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 111 SVDITINNQKIAKGEITIMEEDDT 134
            VDI +NN  +A  ++T    D  
Sbjct: 10  RVDIYLNNGYMATRDVTFNTGDSE 33


>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201
           protein AF_135, structural genomics, PSI-II, dimer;
           2.30A {Archaeoglobus fulgidus dsm 4304} (A:)
          Length = 142

 Score = 26.6 bits (59), Expect = 1.5
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 103 TLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + K   G+ V I +N Q      I   +E+     ++V 
Sbjct: 72  EILKGRNGKEVTIYLNKQTATVSRINFCDENAVLSPIKVT 111


>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal domain;
           usher, N-terminal domain, ternary complex with chaperone
           and pilus subunit, chaperone, structural protein,
           mebrane protein; 1.76A {Escherichia coli K12} (D:28-125)
          Length = 98

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 111 SVDITINNQKIAKGEITIMEEDDT 134
            VDI +NN  +A  ++T    D  
Sbjct: 7   RVDIYLNNGYMATRDVTFNTGDSE 30


>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase,
           flavonoid; HET: NAR; 1.85A {Medicago sativa} (A:)
          Length = 222

 Score = 25.0 bits (54), Expect = 4.0
 Identities = 3/38 (7%), Positives = 11/38 (28%)

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            +    VN   G  +   +     + ++ +       +
Sbjct: 136 AEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEK 173


>2j44_A SPNDX, alkaline amylopullulanase; virulence, glycogen
           binding, carbohydrate-binding module; HET: GLC; 2.1A
           {Streptococcus pneumoniae} (A:1-106)
          Length = 106

 Score = 25.2 bits (55), Expect = 4.1
 Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +DV+  SE   + + +  +   D++   +++ +K +    +    IS L+N         
Sbjct: 25  DDVEKPSENWPNGALSFKDAKKDDYGYYLDVKLKGE---QAKK--ISFLIN--NTA---- 73

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
            K +    D ++        E  + ++     
Sbjct: 74  GKNLTG--DKSVEKLVPKMNEAWLDQDYKVFS 103


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 972,525
Number of extensions: 37437
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 18
Length of query: 147
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 66
Effective length of database: 2,217,844
Effective search space: 146377704
Effective search space used: 146377704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)