RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] (147 letters) >d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]} Length = 87 Score = 75.0 bits (185), Expect = 3e-15 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE Sbjct: 1 SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + +++E +FGVR+ EI++ + Sbjct: 61 VVVIDE---NFGVRITEIVSPK 79 >d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]} Length = 71 Score = 62.0 bits (151), Expect = 2e-11 Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++ + + + G + ++ L L G ++ + + Q +A+GE+ +E Sbjct: 2 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEG 61 Query: 132 DDTHFGVRVIEIL 144 G+++ ++ Sbjct: 62 ---RLGLQITRLV 71 >d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD {Escherichia coli [TaxId: 562]} Length = 121 Score = 24.5 bits (53), Expect = 3.6 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 111 SVDITINNQKIAKGEITIMEEDD 133 VDI +NN +A ++T D Sbjct: 33 RVDIYLNNGYMATRDVTFNTGDS 55 >d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 Score = 24.3 bits (53), Expect = 4.4 Identities = 6/35 (17%), Positives = 11/35 (31%) Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNN 37 K+ + IK L+ + P + N Sbjct: 14 GKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNK 48 >d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 154 Score = 23.5 bits (50), Expect = 8.0 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 10/59 (16%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITL--------DKRVGESVDITINNQKIAKGEITIM 129 ++L + ++ V + GDV+ + R V ++ +A+G + ++ Sbjct: 96 GTVVLLEQSFRYTSPVRI--GDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEGVVKVL 152 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.131 0.351 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 496,642 Number of extensions: 20466 Number of successful extensions: 46 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 13 Length of query: 147 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 70 Effective length of database: 1,350,386 Effective search space: 94527020 Effective search space used: 94527020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 49 (22.9 bits)