RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor
switch protein [Candidatus Liberibacter asiaticus str. psy62]
         (147 letters)



>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN
           {Thermotoga maritima [TaxId: 2336]}
          Length = 87

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +L+++IP+K+ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA+GE
Sbjct: 1   SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + +++E   +FGVR+ EI++ +
Sbjct: 61  VVVIDE---NFGVRITEIVSPK 79


>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain
           {Pseudomonas syringae [TaxId: 317]}
          Length = 71

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++ + + +  G   + ++ L  L  G ++ +         +    Q +A+GE+  +E 
Sbjct: 2   LDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEG 61

Query: 132 DDTHFGVRVIEIL 144
                G+++  ++
Sbjct: 62  ---RLGLQITRLV 71


>d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD
           {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 111 SVDITINNQKIAKGEITIMEEDD 133
            VDI +NN  +A  ++T    D 
Sbjct: 33  RVDIYLNNGYMATRDVTFNTGDS 55


>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome
          remodeling ATPase ISWI {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 128

 Score = 24.3 bits (53), Expect = 4.4
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 3  KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNN 37
           K+ +   IK  L+ +      P     +    N 
Sbjct: 14 GKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNK 48


>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 154

 Score = 23.5 bits (50), Expect = 8.0
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITL--------DKRVGESVDITINNQKIAKGEITIM 129
             ++L     + ++ V +  GDV+ +          R    V     ++ +A+G + ++
Sbjct: 96  GTVVLLEQSFRYTSPVRI--GDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEGVVKVL 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,642
Number of extensions: 20466
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 13
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)