HHsearch alignment for GI: 254780689 and conserved domain: COG1536

>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=549.87  Aligned_cols=318  Identities=27%  Similarity=0.494  Sum_probs=304.5

Q ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHH
Q ss_conf             6868799999998381468999851999999999999861389998999999999999985104566-534889999761
Q gi|254780689|r   22 LTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLT-ENSKNIESILEE  100 (345)
Q Consensus        22 Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~-g~~~~~~~lL~~  100 (345)
T Consensus        11 Lt~~~KaAilLlslGe~~aa~vlk~l~~~eiq~l~~~~a~lk~v~~~~~~~il~eF~~~~~~~~~i~~~~~~~~~~lL~k   90 (339)
T COG1536          11 LTGTEKAAILLLALGEEIAAEVLKHLSPEEIQRLSTEMATLKTVSPEEKEQVLEEFEELFTEQAGINKGADEYARELLEK   90 (339)
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             65767999999980979999999858998999999999855589999999999999999985000123719999999998


Q ss_pred             CCCHHHHHHHHHHHHCCCCCC-CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             149799999975441134456-7567897419989999998403864788999957888999999837989999999998
Q gi|254780689|r  101 GLEQNELEKLLNKSDISQENN-NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRT  179 (345)
Q Consensus       101 al~~d~a~~ll~~~~~~~~~~-~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ri  179 (345)
T Consensus        91 alg~~~a~~i~~~i~--~~~~~~~~~~~l~~~~p~~l~~~i~~EhPQtia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ri  168 (339)
T COG1536          91 ALGEEKAESLLERIT--GSAIQTSPFDLLRKLDPSQLADLIKNEHPQTIALILSYLPPDQAAEILSTLPEELRADVVKRI  168 (339)
T ss_pred             HCCHHHHHHHHHHHH--HCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             576768999997754--201213277775017899999998712518899999815877789999859998999999998


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             4048999899999999999972234---4212363789999950177577999999999865999999997415789985
Q gi|254780689|r  180 VNLPKISPYIQKTIEKCIVEMLPQS---NSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLI  256 (345)
Q Consensus       180 a~l~~v~~ev~~~ie~~L~~~l~~~---~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~  256 (345)
T Consensus       169 a~l~~v~p~al~~i~~~l~~~l~~~~~~~~~~~gg~~~~aeIlN~~d~~~e~~il~~l~~~~~~la~~I~~kmF~Fedi~  248 (339)
T COG1536         169 ATLEGVSPEALAELENVLEKKLQSLVNEDYSKLGGIKAAAEILNLLDRGTEKTILESLEEEDPELAEEIKEKMFVFEDIV  248 (339)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             71126998999999999999987520300002563868999998444668999999876328878999999872199887


Q ss_pred             CCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             09978999998309888999985388989999999610089999999998500589998999999999999999999869
Q gi|254780689|r  257 TLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTN  336 (345)
Q Consensus       257 ~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G  336 (345)
T Consensus       249 ~ldd~~iq~lL~~v~~~~La~aLkg~~~~lrekilsnmskR~~e~i~~el~~~-gpi~~~dve~aq~~il~~~r~l~~~G  327 (339)
T COG1536         249 LLDDRSIQRLLREVDKEDLAIALKGASEELREKILSNMSKRAAEMLKEELEFL-GPVRLSDVETAQKAILNIVRRLAESG  327 (339)
T ss_pred             HCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             45689999999873878999998179889999999844599999999876503-88538888999999999999999779


Q ss_pred             CEECCC
Q ss_conf             795188
Q gi|254780689|r  337 KIELSN  342 (345)
Q Consensus       337 ~I~l~~  342 (345)
T Consensus       328 ~I~i~~  333 (339)
T COG1536         328 EIVIKR  333 (339)
T ss_pred             CEEECC
T ss_conf             877367