HHsearch alignment for GI: 254780689 and conserved domain: PRK07194

>PRK07194 fliG flagellar motor switch protein G; Reviewed.
Probab=100.00  E-value=0  Score=607.44  Aligned_cols=324  Identities=21%  Similarity=0.359  Sum_probs=306.9

Q ss_pred             CCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHH
Q ss_conf             792236868799999998381468999851999999999999861389998999999999999985104566-5348899
Q gi|254780689|r   17 ISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLT-ENSKNIE   95 (345)
Q Consensus        17 ~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~-g~~~~~~   95 (345)
T Consensus         2 ~d~~~Lsg~~KAAilll~LGee~Aa~ilk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~EF~~~~~~~~~l~~g~~~~~~   81 (334)
T PRK07194          2 SDTKGMSNLEQAAILLLSMGEEAAAMVMQHLSREEVQRLSQKMARLSGIKVDQARQVLQRFFQDYREQSGINGASRSYLQ   81 (334)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             99754588999999999979277999987499999999999998269989999999999999998725775535399999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             99761149799999975441134456756789741998999999840386478899995788899999983798999999
Q gi|254780689|r   96 SILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADI  175 (345)
Q Consensus        96 ~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev  175 (345)
T Consensus        82 ~~L~~alg~~~a~~il~~--i~~~~~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~ev  159 (334)
T PRK07194         82 RTLNKALGGDIAKSLINS--IYGDEIRHKMQRLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDI  159 (334)
T ss_pred             HHHHHHCCHHHHHHHHHH--HHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf             999985373789999998--606664567899867999999999873485799999980899999999997899989999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9998404899989999999999997223---4421236378999995017757799999999986599999999741578
Q gi|254780689|r  176 MKRTVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLF  252 (345)
Q Consensus       176 ~~Ria~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~F  252 (345)
T Consensus       160 i~Ria~l~~v~p~~i~~i~~~L~~~~~~~~~~~~~~~~G~~~~A~IlN~~~~~~-~~il~~L~~~d~~la~~Ir~~mF~F  238 (334)
T PRK07194        160 LYRIAQLDDVDRDVVDELDELIERCLAMVLEEHGTKVIGVKQAADIINRFPGDR-QQLMEMLKEHDEEVVNEIEDNMYDF  238 (334)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHH-HHHHHHHHHHCHHHHHHHHHHCEEH
T ss_conf             999974478999999999999999987433445566662899999982585259-9999999863999999999871127


Q ss_pred             HHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99850997899999830988899998538898999999961008999999999850058999899999999999999999
Q gi|254780689|r  253 DDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISL  332 (345)
Q Consensus       253 eDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L  332 (345)
T Consensus       239 edl~~l~~~~~~~ll~~v~~~~l~~ALkga~~e~~~~il~nmS~R~a~~l~eel~~~-gpv~~~dve~Aq~~Iv~~~r~L  317 (334)
T PRK07194        239 FILSRQSEETLQRLMDEVPMELWAIALKGTEPALRQAILRVMPKRQAQALETQIERT-GPVPLSRVEQARKEIMALVREL  317 (334)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             875338937899998628998999998469899999999876699999999999853-9986899999999999999999


Q ss_pred             HHCCCEECCCCC
Q ss_conf             986979518888
Q gi|254780689|r  333 LKTNKIELSNPI  344 (345)
Q Consensus       333 ~~~G~I~l~~~~  344 (345)
T Consensus       318 ~~~G~I~L~~~~  329 (334)
T PRK07194        318 AEAGEIELQLFE  329 (334)
T ss_pred             HHCCCEEECCCC
T ss_conf             988998835787