HHsearch alignment for GI: 254780689 and conserved domain: PRK07194
>PRK07194 fliG flagellar motor switch protein G; Reviewed.
Probab=100.00 E-value=0 Score=607.44 Aligned_cols=324 Identities=21% Similarity=0.359 Sum_probs=306.9
Q ss_pred CCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHH
Q ss_conf 792236868799999998381468999851999999999999861389998999999999999985104566-5348899
Q gi|254780689|r 17 ISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLT-ENSKNIE 95 (345)
Q Consensus 17 ~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~-g~~~~~~ 95 (345)
T Consensus 2 ~d~~~Lsg~~KAAilll~LGee~Aa~ilk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~EF~~~~~~~~~l~~g~~~~~~ 81 (334)
T PRK07194 2 SDTKGMSNLEQAAILLLSMGEEAAAMVMQHLSREEVQRLSQKMARLSGIKVDQARQVLQRFFQDYREQSGINGASRSYLQ 81 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99754588999999999979277999987499999999999998269989999999999999998725775535399999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 99761149799999975441134456756789741998999999840386478899995788899999983798999999
Q gi|254780689|r 96 SILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADI 175 (345)
Q Consensus 96 ~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev 175 (345)
T Consensus 82 ~~L~~alg~~~a~~il~~--i~~~~~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~ev 159 (334)
T PRK07194 82 RTLNKALGGDIAKSLINS--IYGDEIRHKMQRLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDI 159 (334)
T ss_pred HHHHHHCCHHHHHHHHHH--HHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf 999985373789999998--606664567899867999999999873485799999980899999999997899989999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9998404899989999999999997223---4421236378999995017757799999999986599999999741578
Q gi|254780689|r 176 MKRTVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLF 252 (345)
Q Consensus 176 ~~Ria~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~F 252 (345)
T Consensus 160 i~Ria~l~~v~p~~i~~i~~~L~~~~~~~~~~~~~~~~G~~~~A~IlN~~~~~~-~~il~~L~~~d~~la~~Ir~~mF~F 238 (334)
T PRK07194 160 LYRIAQLDDVDRDVVDELDELIERCLAMVLEEHGTKVIGVKQAADIINRFPGDR-QQLMEMLKEHDEEVVNEIEDNMYDF 238 (334)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHH-HHHHHHHHHHCHHHHHHHHHHCEEH
T ss_conf 999974478999999999999999987433445566662899999982585259-9999999863999999999871127
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99850997899999830988899998538898999999961008999999999850058999899999999999999999
Q gi|254780689|r 253 DDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISL 332 (345)
Q Consensus 253 eDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L 332 (345)
T Consensus 239 edl~~l~~~~~~~ll~~v~~~~l~~ALkga~~e~~~~il~nmS~R~a~~l~eel~~~-gpv~~~dve~Aq~~Iv~~~r~L 317 (334)
T PRK07194 239 FILSRQSEETLQRLMDEVPMELWAIALKGTEPALRQAILRVMPKRQAQALETQIERT-GPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 875338937899998628998999998469899999999876699999999999853-9986899999999999999999
Q ss_pred HHCCCEECCCCC
Q ss_conf 986979518888
Q gi|254780689|r 333 LKTNKIELSNPI 344 (345)
Q Consensus 333 ~~~G~I~l~~~~ 344 (345)
T Consensus 318 ~~~G~I~L~~~~ 329 (334)
T PRK07194 318 AEAGEIELQLFE 329 (334)
T ss_pred HHCCCEEECCCC
T ss_conf 988998835787