HHsearch alignment for GI: 254780689 and conserved domain: PRK07194
>PRK07194 fliG flagellar motor switch protein G; Reviewed.
Probab=99.16 E-value=3.1e-08 Score=74.17 Aligned_cols=178 Identities=10% Similarity=0.147 Sum_probs=136.2
Q ss_pred HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHHC
Q ss_conf 4037922368------68799999998381468999851999999999999861389998999999---99999998510
Q gi|254780689|r 14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDI---IDEFESQFIAG 84 (345)
Q Consensus 14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~v---l~EF~~~~~~~ 84 (345)
T Consensus 112 L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~evi~Ria~l~~v~p~~i~~i~~~L~~~~~~~~~~ 191 (334)
T PRK07194 112 LQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDILYRIAQLDDVDRDVVDELDELIERCLAMVLEE 191 (334)
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 86799999999987348579999998089999999999789998999999997447899999999999999998743344
Q ss_pred CC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 45-66534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r 85 IG-LTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP 156 (345)
Q Consensus 85 ~~-~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~ 156 (345)
T Consensus 192 ~~~~~~G~~~~A~IlN~~-~~~~-~~il~~L~~~d~~la~~Ir~~mF~Fedl~~l~~~~~~~ll~~v~~~~l~~ALkga~ 269 (334)
T PRK07194 192 HGTKVIGVKQAADIINRF-PGDR-QQLMEMLKEHDEEVVNEIEDNMYDFFILSRQSEETLQRLMDEVPMELWAIALKGTE 269 (334)
T ss_pred CCCCCCCHHHHHHHHCCC-CHHH-HHHHHHHHHHCHHHHHHHHHHCEEHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 556666289999998258-5259-99999998639999999998711278753389378999986289989999984698
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8899999983798999999999840489998999999
Q gi|254780689|r 157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTI 193 (345)
Q Consensus 157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~i 193 (345)
T Consensus 270 ~e~~~~il~nmS~R~a~~l~eel~~~gpv~~~dve~A 306 (334)
T PRK07194 270 PALRQAILRVMPKRQAQALETQIERTGPVPLSRVEQA 306 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999987669999999999985399868999999