Query gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 345
No_of_seqs 124 out of 735
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 20:19:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780689.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05686 fliG flagellar motor 100.0 0 0 625.2 40.7 323 18-343 6-332 (337)
2 TIGR00207 fliG flagellar motor 100.0 0 0 635.4 32.2 323 20-344 14-340 (346)
3 PRK07194 fliG flagellar motor 100.0 0 0 607.4 39.9 324 17-344 2-329 (334)
4 COG1536 FliG Flagellar motor s 100.0 0 0 549.9 38.0 318 22-342 11-333 (339)
5 pfam01706 FliG_C FliG C-termin 100.0 8.4E-29 2.1E-33 210.1 13.7 110 231-341 1-110 (110)
6 PRK07194 fliG flagellar motor 99.2 3.1E-08 7.8E-13 74.2 19.8 178 14-193 112-306 (334)
7 PRK05686 fliG flagellar motor 99.1 5.8E-08 1.5E-12 72.3 19.3 181 14-195 115-312 (337)
8 COG1536 FliG Flagellar motor s 98.8 7.8E-06 2E-10 58.3 19.9 44 124-167 125-168 (339)
9 TIGR00207 fliG flagellar motor 98.0 0.0014 3.5E-08 43.4 16.6 162 24-186 138-310 (346)
10 PRK05934 type III secretion sy 97.8 4.9E-05 1.2E-09 53.0 5.8 49 129-177 290-338 (341)
11 pfam03448 MgtE_N MgtE intracel 97.3 0.0047 1.2E-07 39.9 10.5 70 102-176 13-82 (102)
12 pfam03448 MgtE_N MgtE intracel 96.9 0.0075 1.9E-07 38.5 8.0 95 132-248 2-96 (102)
13 COG2239 MgtE Mg/Co/Ni transpor 96.6 0.061 1.5E-06 32.5 10.8 56 27-82 47-108 (451)
14 COG3334 Uncharacterized conser 96.4 0.02 5.2E-07 35.7 7.4 64 123-186 123-186 (192)
15 COG2239 MgtE Mg/Co/Ni transpor 94.7 0.37 9.4E-06 27.4 10.3 81 92-177 45-125 (451)
16 COG3334 Uncharacterized conser 91.2 0.47 1.2E-05 26.7 4.9 48 129-176 117-164 (192)
17 pfam09126 NaeI Restriction end 80.1 4.6 0.00012 20.1 5.4 62 279-343 162-234 (291)
18 PHA01513 mnt Mnt 65.0 10 0.00026 17.8 6.1 60 165-226 10-70 (82)
19 PRK09273 hypothetical protein; 60.6 12 0.00031 17.3 4.0 43 252-296 157-199 (211)
20 COG4086 Predicted secreted pro 58.9 13 0.00034 17.1 5.9 17 126-142 111-127 (299)
21 pfam12408 DUF3666 Ribose-5-pho 58.1 14 0.00035 17.0 3.6 34 260-295 4-37 (48)
22 TIGR02019 BchJ bacteriochlorop 44.2 22 0.00057 15.6 6.4 80 94-173 10-91 (189)
23 pfam11865 DUF3385 Domain of un 42.2 24 0.00061 15.4 7.6 139 142-296 6-154 (160)
24 TIGR01737 FGAM_synth_I phospho 37.3 28 0.00072 14.9 2.7 23 319-341 73-98 (264)
25 PRK13901 ruvA Holliday junctio 37.2 29 0.00073 14.9 9.3 54 116-170 77-130 (196)
26 PRK12435 ferrochelatase; Provi 37.1 13 0.00032 17.2 0.6 47 25-79 3-49 (316)
27 KOG1114 consensus 35.9 30 0.00076 14.7 7.8 104 125-243 1083-1193(1304)
28 pfam11513 TA0956 Thermoplasma 35.0 15 0.00038 16.8 0.7 49 140-188 11-61 (110)
29 COG4973 XerC Site-specific rec 34.5 31 0.0008 14.6 5.7 100 13-112 19-126 (299)
30 pfam11239 DUF3040 Protein of u 33.1 33 0.00084 14.5 2.7 24 224-247 4-31 (82)
31 pfam06070 Herpes_UL32 Herpesvi 33.1 33 0.00084 14.5 3.9 105 188-304 121-232 (777)
32 TIGR00444 mazG MazG family pro 32.0 34 0.00087 14.4 2.2 134 136-290 79-223 (253)
33 TIGR01398 FlhA flagellar biosy 31.8 31 0.00079 14.6 1.9 25 224-248 518-542 (713)
34 cd07176 terB tellurite resista 31.7 35 0.00089 14.3 6.9 69 41-111 13-81 (111)
35 COG1184 GCD2 Translation initi 30.7 36 0.00092 14.2 6.5 18 286-303 264-281 (301)
36 COG2074 2-phosphoglycerate kin 30.0 37 0.00095 14.1 3.7 27 315-341 271-297 (299)
37 TIGR01788 Glu-decarb-GAD gluta 27.4 41 0.001 13.8 3.1 30 83-112 41-70 (493)
38 cd07313 terB_like_2 tellurium 26.1 43 0.0011 13.7 9.1 71 39-113 8-78 (104)
39 TIGR02460 osmo_MPGsynth mannos 26.0 8.1 0.00021 18.5 -1.9 95 161-258 40-142 (394)
40 pfam05099 TerB Tellurite resis 25.4 45 0.0011 13.6 10.9 103 40-148 33-136 (140)
41 TIGR01078 arcA arginine deimin 24.7 29 0.00074 14.8 0.7 32 74-108 48-81 (421)
42 cd07920 Pumilio Pumilio-family 24.6 46 0.0012 13.5 19.5 95 211-306 165-260 (322)
43 pfam04499 SAPS SIT4 phosphatas 23.8 48 0.0012 13.4 8.2 11 212-222 222-232 (380)
44 PRK12523 RNA polymerase sigma 23.4 49 0.0012 13.3 9.3 77 59-142 1-78 (172)
45 COG2411 Uncharacterized conser 23.2 49 0.0013 13.3 2.7 102 226-338 78-188 (188)
46 TIGR02784 addA_alphas double-s 23.0 50 0.0013 13.3 2.7 66 22-87 36-114 (1190)
47 TIGR00455 apsK adenylylsulfate 22.9 31 0.0008 14.6 0.6 21 323-343 78-98 (187)
48 pfam04751 DUF615 Protein of un 22.9 50 0.0013 13.3 7.2 75 24-114 6-80 (153)
49 cd03397 PAP2_acid_phosphatase 22.9 50 0.0013 13.3 2.5 23 147-169 162-184 (232)
50 TIGR02787 codY_Gpos GTP-sensin 22.7 46 0.0012 13.5 1.5 50 290-339 177-233 (255)
51 pfam11625 DUF3253 Protein of u 22.4 51 0.0013 13.2 3.9 51 284-344 5-64 (83)
52 TIGR01589 A_thal_3526 uncharac 22.3 51 0.0013 13.2 2.7 38 98-135 12-50 (57)
53 pfam08006 DUF1700 Protein of u 21.4 53 0.0014 13.1 5.4 54 59-114 11-64 (181)
54 PRK12514 RNA polymerase sigma 21.1 54 0.0014 13.0 9.8 35 267-306 143-177 (179)
55 TIGR01992 PTS-IIBC-Tre PTS sys 21.0 54 0.0014 13.0 4.6 60 38-97 2-91 (489)
56 KOG0467 consensus 21.0 54 0.0014 13.0 1.6 38 272-309 745-786 (887)
57 pfam01984 dsDNA_bind Double-st 20.1 57 0.0014 12.9 3.4 50 177-226 47-96 (105)
No 1
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=100.00 E-value=0 Score=625.17 Aligned_cols=323 Identities=28% Similarity=0.480 Sum_probs=309.3
Q ss_pred CHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHH
Q ss_conf 9223686879999999838146899985199999999999986138999899999999999998510456-653488999
Q gi|254780689|r 18 SPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGL-TENSKNIES 96 (345)
Q Consensus 18 ~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~-~g~~~~~~~ 96 (345)
.+.+|||+||||+||++||++.|++||+||+++||++|+++|++++.|++++++.|++||+..+.++.++ .||.+|+++
T Consensus 6 ~~~~Lsg~~KAAilLl~LGee~Aa~vlk~L~~~Ei~~i~~~m~~l~~i~~~~~~~Vl~EF~~~~~~~~~~~~g~~~~~~~ 85 (337)
T PRK05686 6 DLDKLSGPEKAAILLLALGEEAAAKVLKHLTPDEVQKLSAAMANLRNVSPEQVEAVLEEFEDEFEAGAYILMGGIDYARR 85 (337)
T ss_pred HHHHCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 89875849899999999591779999863999999999999975699899999999999999998247767773899999
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 97611497999999754411344567567897419989999998403864788999957888999999837989999999
Q gi|254780689|r 97 ILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM 176 (345)
Q Consensus 97 lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~ 176 (345)
+|++++|+++++.|+++ +.++...++|++|+|++|++|++||++|||||||+|||||+|++||+||..||+++|.+|+
T Consensus 86 ~L~~alg~~~a~~il~~--i~~~~~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi 163 (337)
T PRK05686 86 LLEKALGEEKANSILER--ILESLQTSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVM 163 (337)
T ss_pred HHHHHCCHHHHHHHHHH--HCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 99983598999999986--2156658768998659999999998724858999999809999999999869999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 998404899989999999999997223---44212363789999950177577999999999865999999997415789
Q gi|254780689|r 177 KRTVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFD 253 (345)
Q Consensus 177 ~Ria~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~Fe 253 (345)
+|||+++.++|+++++|+++|++++.. .+..+.||++.+|+|||+++++.++++|+.|+++||+++++||++||+||
T Consensus 164 ~RiA~l~~v~p~~v~~ie~~L~~~~~~~~~~~~~~~~G~~~vA~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fe 243 (337)
T PRK05686 164 MRIATLEGVQPEALKELEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTIMESLEEEDPELAEKIKDLMFVFE 243 (337)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHEEHH
T ss_conf 99867789999999999999999974355422344553999999987476468999999998758999999998812299
Q ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98509978999998309888999985388989999999610089999999998500589998999999999999999999
Q gi|254780689|r 254 DLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLL 333 (345)
Q Consensus 254 Dl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~ 333 (345)
||.+++++++|.+|++|+.++|++||||++++++++||+|||+|+++|++|||+.+ |||+.+|||+||++|++++|+|+
T Consensus 244 di~~l~~~~l~~ll~~v~~~~l~~ALKga~~~~~~~il~nmS~R~a~~l~eel~~~-gpv~~~dve~Aq~~Iv~~~r~L~ 322 (337)
T PRK05686 244 DLVDLDDRAIQRLLREVDNDDLALALKGADEELREKFLSNMSKRAAEMLREDLEAL-GPVRLSDVEEAQKKIVQIARRLA 322 (337)
T ss_pred HHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77477999999999848999999987789899999999862899999999999863-99878999999999999999999
Q ss_pred HCCCEECCCC
Q ss_conf 8697951888
Q gi|254780689|r 334 KTNKIELSNP 343 (345)
Q Consensus 334 ~~G~I~l~~~ 343 (345)
++|+|+|+..
T Consensus 323 ~~G~I~l~~~ 332 (337)
T PRK05686 323 EAGEIVLGGG 332 (337)
T ss_pred HCCCEEECCC
T ss_conf 8898885898
No 2
>TIGR00207 fliG flagellar motor switch protein FliG; InterPro: IPR000090 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour . The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour . CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN . Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important . Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins . This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring , . FliG is present in about 25 copies per flagellum. This structure of the C-terminal domain is known, this domain functions specifically in motor rotation .; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 flagellin-based flagellum.
Probab=100.00 E-value=0 Score=635.35 Aligned_cols=323 Identities=27% Similarity=0.444 Sum_probs=308.3
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHH
Q ss_conf 23686879999999838146899985199999999999986138999899999999999998510456-65348899997
Q gi|254780689|r 20 VSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGL-TENSKNIESIL 98 (345)
Q Consensus 20 ~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~-~g~~~~~~~lL 98 (345)
-.|||.||+||||+++|+|.+++|||||+.+||++|+.+|+++..|+......||.||...+....++ .||.+|+|.+|
T Consensus 14 ~~Ltg~~K~aILL~~iG~d~~a~vfkhL~~~ei~~Ls~~i~~l~~i~~~~~~~VL~EF~~~~~~~~yi~~gg~~YaR~lL 93 (346)
T TIGR00207 14 DELTGKQKAAILLISIGEDVSAEVFKHLSQEEIEELSAEIAKLEQIDKQQKDDVLEEFEEIAEAQEYINKGGLDYARELL 93 (346)
T ss_pred HHCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 42104567888877722214557864178889999999988532234888789999999999999988506378999998
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 61149799999975441134456756789741998999999840386478899995788899999983798999999999
Q gi|254780689|r 99 EEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKR 178 (345)
Q Consensus 99 ~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~R 178 (345)
+|+||+++|..+|+++. ..-...+.|+++.+++|.++++||++|||||||+|||||+|.+||.||+.||+++|++|+.|
T Consensus 94 ~kaLG~e~A~~~l~~l~-~slq~~~~f~~~~~~~P~~~~dfI~~EHPQtiAlIL~hL~~~~Aa~iLs~l~~e~~~~v~~R 172 (346)
T TIGR00207 94 EKALGEEKAKKILNKLT-SSLQTKPGFEFLRKAEPQQIADFIQQEHPQTIALILSHLDPAQAAEILSLLPEEVQAEVARR 172 (346)
T ss_pred HHHCCHHHHHHHHHHHH-HHHCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 86141589999999888-75316311567631586889987750586799999985183047888730685689999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCC---CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 8404899989999999999997223442---1236378999995017757799999999986599999999741578998
Q gi|254780689|r 179 TVNLPKISPYIQKTIEKCIVEMLPQSNS---NTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDL 255 (345)
Q Consensus 179 ia~l~~v~~ev~~~ie~~L~~~l~~~~~---~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl 255 (345)
||.|+.++|+++.+|+++|..+|.+..+ .+.||+..||+|+|.+++.+++.+|++++..||+||++|+++||+||||
T Consensus 173 iA~~g~~sP~vv~ev~~VLe~kL~s~~~~~~~~~GGv~~vaEi~N~~~~~~ek~~l~~~e~~D~~LA~~Ik~~MF~FEdi 252 (346)
T TIGR00207 173 IAVMGRTSPEVVKEVERVLEKKLESLTSEDYTKVGGVRAVAEIINLLDRKTEKTILESLEEVDPELAEEIKKKMFVFEDI 252 (346)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCHHHH
T ss_conf 98507867899999999997762244212355416257899987357871599999999831847899999723640115
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 50997899999830988899998538898999999961008999999999850058999899999999999999999986
Q gi|254780689|r 256 ITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKT 335 (345)
Q Consensus 256 ~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~ 335 (345)
+.||+|++|+||++||.+.|.+|||+++.+++++||.|||+||+++++|||+.+ ||||.+|||.+|+.|+.++|+|++.
T Consensus 253 V~lDdraIqr~L~~vd~~~L~~ALK~~~~~l~ek~l~NMS~Raa~~l~edm~fl-Gpvr~kdVe~~Q~~I~~iVr~L~E~ 331 (346)
T TIGR00207 253 VKLDDRAIQRVLREVDKEDLLLALKTAEKPLREKFLNNMSQRAAEILKEDMEFL-GPVRLKDVEEAQKKIVSIVRKLEEK 331 (346)
T ss_pred HHHCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 430308999999984335567785126624788986315489999999988726-8844024589999999999866117
Q ss_pred CCEECCCCC
Q ss_conf 979518888
Q gi|254780689|r 336 NKIELSNPI 344 (345)
Q Consensus 336 G~I~l~~~~ 344 (345)
|+|+|++-.
T Consensus 332 GEiVI~~Gg 340 (346)
T TIGR00207 332 GEIVIQRGG 340 (346)
T ss_pred CCEEEECCC
T ss_conf 605760478
No 3
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=100.00 E-value=0 Score=607.44 Aligned_cols=324 Identities=21% Similarity=0.359 Sum_probs=306.9
Q ss_pred CCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHH
Q ss_conf 792236868799999998381468999851999999999999861389998999999999999985104566-5348899
Q gi|254780689|r 17 ISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLT-ENSKNIE 95 (345)
Q Consensus 17 ~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~-g~~~~~~ 95 (345)
-.|.+|||.||||+||++||++.|++||+||+++||++|+.+|+++++|++++++.|++||+..+..++++. ||.+|++
T Consensus 2 ~d~~~Lsg~~KAAilll~LGee~Aa~ilk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~EF~~~~~~~~~l~~g~~~~~~ 81 (334)
T PRK07194 2 SDTKGMSNLEQAAILLLSMGEEAAAMVMQHLSREEVQRLSQKMARLSGIKVDQARQVLQRFFQDYREQSGINGASRSYLQ 81 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99754588999999999979277999987499999999999998269989999999999999998725775535399999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 99761149799999975441134456756789741998999999840386478899995788899999983798999999
Q gi|254780689|r 96 SILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADI 175 (345)
Q Consensus 96 ~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev 175 (345)
++|++++|+++++.++++ +.+....++|++|+|++|++|++||++|||||||+|||||+|++||+||..||++.|.+|
T Consensus 82 ~~L~~alg~~~a~~il~~--i~~~~~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~ev 159 (334)
T PRK07194 82 RTLNKALGGDIAKSLINS--IYGDEIRHKMQRLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDI 159 (334)
T ss_pred HHHHHHCCHHHHHHHHHH--HHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf 999985373789999998--606664567899867999999999873485799999980899999999997899989999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9998404899989999999999997223---4421236378999995017757799999999986599999999741578
Q gi|254780689|r 176 MKRTVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLF 252 (345)
Q Consensus 176 ~~Ria~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~F 252 (345)
++|||+++.++|+++..|+++|.+++.. ....+.+|++.+|+|||+++++. +++|+.|++.||+++++||++||||
T Consensus 160 i~Ria~l~~v~p~~i~~i~~~L~~~~~~~~~~~~~~~~G~~~~A~IlN~~~~~~-~~il~~L~~~d~~la~~Ir~~mF~F 238 (334)
T PRK07194 160 LYRIAQLDDVDRDVVDELDELIERCLAMVLEEHGTKVIGVKQAADIINRFPGDR-QQLMEMLKEHDEEVVNEIEDNMYDF 238 (334)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHH-HHHHHHHHHHCHHHHHHHHHHCEEH
T ss_conf 999974478999999999999999987433445566662899999982585259-9999999863999999999871127
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99850997899999830988899998538898999999961008999999999850058999899999999999999999
Q gi|254780689|r 253 DDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISL 332 (345)
Q Consensus 253 eDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L 332 (345)
|||.++++++++.+|++|+.++|++||||++++++++||+|||+|+++|+++||+.+ |||+.+|||+||+.|++++|+|
T Consensus 239 edl~~l~~~~~~~ll~~v~~~~l~~ALkga~~e~~~~il~nmS~R~a~~l~eel~~~-gpv~~~dve~Aq~~Iv~~~r~L 317 (334)
T PRK07194 239 FILSRQSEETLQRLMDEVPMELWAIALKGTEPALRQAILRVMPKRQAQALETQIERT-GPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 875338937899998628998999998469899999999876699999999999853-9986899999999999999999
Q ss_pred HHCCCEECCCCC
Q ss_conf 986979518888
Q gi|254780689|r 333 LKTNKIELSNPI 344 (345)
Q Consensus 333 ~~~G~I~l~~~~ 344 (345)
+++|+|+|..--
T Consensus 318 ~~~G~I~L~~~~ 329 (334)
T PRK07194 318 AEAGEIELQLFE 329 (334)
T ss_pred HHCCCEEECCCC
T ss_conf 988998835787
No 4
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=549.87 Aligned_cols=318 Identities=27% Similarity=0.494 Sum_probs=304.5
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHH
Q ss_conf 6868799999998381468999851999999999999861389998999999999999985104566-534889999761
Q gi|254780689|r 22 LTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLT-ENSKNIESILEE 100 (345)
Q Consensus 22 Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~-g~~~~~~~lL~~ 100 (345)
|||.+|||++|++||++.|++||+||+++|+++++.+|++++.|+++..+.++.||++.+..+.++. |+.+|.+.+|++
T Consensus 11 Lt~~~KaAilLlslGe~~aa~vlk~l~~~eiq~l~~~~a~lk~v~~~~~~~il~eF~~~~~~~~~i~~~~~~~~~~lL~k 90 (339)
T COG1536 11 LTGTEKAAILLLALGEEIAAEVLKHLSPEEIQRLSTEMATLKTVSPEEKEQVLEEFEELFTEQAGINKGADEYARELLEK 90 (339)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 65767999999980979999999858998999999999855589999999999999999985000123719999999998
Q ss_pred CCCHHHHHHHHHHHHCCCCCC-CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 149799999975441134456-7567897419989999998403864788999957888999999837989999999998
Q gi|254780689|r 101 GLEQNELEKLLNKSDISQENN-NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRT 179 (345)
Q Consensus 101 al~~d~a~~ll~~~~~~~~~~-~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ri 179 (345)
++|+++++.+++++. +... ..+|+++.|++|.+|++||.+|||||||+|||||+|++||.||..||+++|.+|++||
T Consensus 91 alg~~~a~~i~~~i~--~~~~~~~~~~~l~~~~p~~l~~~i~~EhPQtia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ri 168 (339)
T COG1536 91 ALGEEKAESLLERIT--GSAIQTSPFDLLRKLDPSQLADLIKNEHPQTIALILSYLPPDQAAEILSTLPEELRADVVKRI 168 (339)
T ss_pred HCCHHHHHHHHHHHH--HCCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 576768999997754--201213277775017899999998712518899999815877789999859998999999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 4048999899999999999972234---4212363789999950177577999999999865999999997415789985
Q gi|254780689|r 180 VNLPKISPYIQKTIEKCIVEMLPQS---NSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLI 256 (345)
Q Consensus 180 a~l~~v~~ev~~~ie~~L~~~l~~~---~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~ 256 (345)
++++.++|++++.++++|+.++... ...+.||++.+|+|+|++++..++.++++|+..||+++++|+++||+||||+
T Consensus 169 a~l~~v~p~al~~i~~~l~~~l~~~~~~~~~~~gg~~~~aeIlN~~d~~~e~~il~~l~~~~~~la~~I~~kmF~Fedi~ 248 (339)
T COG1536 169 ATLEGVSPEALAELENVLEKKLQSLVNEDYSKLGGIKAAAEILNLLDRGTEKTILESLEEEDPELAEEIKEKMFVFEDIV 248 (339)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 71126998999999999999987520300002563868999998444668999999876328878999999872199887
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 09978999998309888999985388989999999610089999999998500589998999999999999999999869
Q gi|254780689|r 257 TLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTN 336 (345)
Q Consensus 257 ~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G 336 (345)
.++++++|.+|++|+.++|++||||++++++++||+|||+|+++|+++|++.+ |||+.+||+.||+.|++++|+|++.|
T Consensus 249 ~ldd~~iq~lL~~v~~~~La~aLkg~~~~lrekilsnmskR~~e~i~~el~~~-gpi~~~dve~aq~~il~~~r~l~~~G 327 (339)
T COG1536 249 LLDDRSIQRLLREVDKEDLAIALKGASEELREKILSNMSKRAAEMLKEELEFL-GPVRLSDVETAQKAILNIVRRLAESG 327 (339)
T ss_pred HCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45689999999873878999998179889999999844599999999876503-88538888999999999999999779
Q ss_pred CEECCC
Q ss_conf 795188
Q gi|254780689|r 337 KIELSN 342 (345)
Q Consensus 337 ~I~l~~ 342 (345)
+|.|..
T Consensus 328 ~I~i~~ 333 (339)
T COG1536 328 EIVIKR 333 (339)
T ss_pred CEEECC
T ss_conf 877367
No 5
>pfam01706 FliG_C FliG C-terminal domain. FliG is a component of the flageller rotor, present in about 25 copies per flagellum. This domain functions specifically in motor rotation.
Probab=99.96 E-value=8.4e-29 Score=210.12 Aligned_cols=110 Identities=28% Similarity=0.457 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 99999865999999997415789985099789999983098889999853889899999996100899999999985005
Q gi|254780689|r 231 LTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLND 310 (345)
Q Consensus 231 L~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~ 310 (345)
|++|++.||+++++|+++||+||||.+++++++|.++++|+.++|++||||++++++++||+|||+|+++++++||+.+
T Consensus 1 l~~L~~~d~~la~~I~~~mf~Fedl~~l~~~~l~~ll~~v~~~~L~~ALkga~~~~~~~il~nms~R~~~~i~~e~~~~- 79 (110)
T pfam01706 1 LEALEERDPELAEEIRKLMFTFEDLVRLDDRDIQRLLREVDKDVLALALKGASEELREKILSNMSKRAAEMLREELEAL- 79 (110)
T ss_pred CCHHHHHCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-
T ss_conf 9038775999999999860039868557999999999849999999988679899999999876899999999999863-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 8999899999999999999999986979518
Q gi|254780689|r 311 SSIAPREVAMARRSIVQEAISLLKTNKIELS 341 (345)
Q Consensus 311 g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~ 341 (345)
|||+.+||++||+.|++.+|+|+++|+|+|.
T Consensus 80 g~v~~~dve~Aq~~i~~~~r~l~~~G~I~l~ 110 (110)
T pfam01706 80 GPVRLSDVEAAQKEIVAIVRELAEEGEIELG 110 (110)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
T ss_conf 9988999999999999999999987696049
No 6
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=99.16 E-value=3.1e-08 Score=74.17 Aligned_cols=178 Identities=10% Similarity=0.147 Sum_probs=136.2
Q ss_pred HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHHC
Q ss_conf 4037922368------68799999998381468999851999999999999861389998999999---99999998510
Q gi|254780689|r 14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDI---IDEFESQFIAG 84 (345)
Q Consensus 14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~v---l~EF~~~~~~~ 84 (345)
.+.+.|..|. .||=+|++|.-|.++.|++||.+|+++....|...|++++.|+|+.++.| |..........
T Consensus 112 L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~evi~Ria~l~~v~p~~i~~i~~~L~~~~~~~~~~ 191 (334)
T PRK07194 112 LQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDILYRIAQLDDVDRDVVDELDELIERCLAMVLEE 191 (334)
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 86799999999987348579999998089999999999789998999999997447899999999999999998743344
Q ss_pred CC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 45-66534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r 85 IG-LTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP 156 (345)
Q Consensus 85 ~~-~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~ 156 (345)
.+ -.||.+.+..+|+.. +.++ +.+++.+.-..+.. --.|+-|..+++..+..+++.=++.++++-|-.-+
T Consensus 192 ~~~~~~G~~~~A~IlN~~-~~~~-~~il~~L~~~d~~la~~Ir~~mF~Fedl~~l~~~~~~~ll~~v~~~~l~~ALkga~ 269 (334)
T PRK07194 192 HGTKVIGVKQAADIINRF-PGDR-QQLMEMLKEHDEEVVNEIEDNMYDFFILSRQSEETLQRLMDEVPMELWAIALKGTE 269 (334)
T ss_pred CCCCCCCHHHHHHHHCCC-CHHH-HHHHHHHHHHCHHHHHHHHHHCEEHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 556666289999998258-5259-99999998639999999998711278753389378999986289989999984698
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8899999983798999999999840489998999999
Q gi|254780689|r 157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTI 193 (345)
Q Consensus 157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~i 193 (345)
++....+|..++...+..+---|..++++...-++.-
T Consensus 270 ~e~~~~il~nmS~R~a~~l~eel~~~gpv~~~dve~A 306 (334)
T PRK07194 270 PALRQAILRVMPKRQAQALETQIERTGPVPLSRVEQA 306 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999987669999999999985399868999999
No 7
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=99.11 E-value=5.8e-08 Score=72.33 Aligned_cols=181 Identities=12% Similarity=0.195 Sum_probs=141.4
Q ss_pred HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----
Q ss_conf 4037922368------687999999983814689998519999999999998613899989999999999999851----
Q gi|254780689|r 14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIA---- 83 (345)
Q Consensus 14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~---- 83 (345)
.+.+.|..|. .||=+|++|.-|.++.|++||.+|+++....|...|++++.++|+.+..|=+--...+..
T Consensus 115 L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi~RiA~l~~v~p~~v~~ie~~L~~~~~~~~~~ 194 (337)
T PRK05686 115 LRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVMMRIATLEGVQPEALKELEEVLEKKLSSMANA 194 (337)
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 86599999999987248589999998099999999998699999999999986778999999999999999997435542
Q ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 04566534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r 84 GIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP 156 (345)
Q Consensus 84 ~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~ 156 (345)
+..-.||.+.+.++|+.. +.+..+.+|+.++...+.. --.|+-|.++++..+..+++.=.++++++-|-.-+
T Consensus 195 ~~~~~~G~~~vA~ILN~~-~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedi~~l~~~~l~~ll~~v~~~~l~~ALKga~ 273 (337)
T PRK05686 195 DRTKMGGVKTVAEILNNL-DRQTEKTIMESLEEEDPELAEKIKDLMFVFEDLVDLDDRAIQRLLREVDNDDLALALKGAD 273 (337)
T ss_pred CCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 234455399999998747-6468999999998758999999998812299774779999999998489999999877898
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 889999998379899999999984048999899999999
Q gi|254780689|r 157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEK 195 (345)
Q Consensus 157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~ 195 (345)
.+..-.||..+|...+.-+--.|..++++...-++.--+
T Consensus 274 ~~~~~~il~nmS~R~a~~l~eel~~~gpv~~~dve~Aq~ 312 (337)
T PRK05686 274 EELREKFLSNMSKRAAEMLREDLEALGPVRLSDVEEAQK 312 (337)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999998628999999999998639987899999999
No 8
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=98.77 E-value=7.8e-06 Score=58.28 Aligned_cols=44 Identities=34% Similarity=0.459 Sum_probs=24.4
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 67897419989999998403864788999957888999999837
Q gi|254780689|r 124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRF 167 (345)
Q Consensus 124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~L 167 (345)
.|++|.+=.|+.++-+|..=+|.-.|-||++++.+...+|+.++
T Consensus 125 l~~~i~~EhPQtia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ri 168 (339)
T COG1536 125 LADLIKNEHPQTIALILSYLPPDQAAEILSTLPEELRADVVKRI 168 (339)
T ss_pred HHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99998712518899999815877789999859998999999998
No 9
>TIGR00207 fliG flagellar motor switch protein FliG; InterPro: IPR000090 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour . The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour . CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN . Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important . Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins . This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring , . FliG is present in about 25 copies per flagellum. This structure of the C-terminal domain is known, this domain functions specifically in motor rotation .; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 flagellin-based flagellum.
Probab=98.05 E-value=0.0014 Score=43.44 Aligned_cols=162 Identities=10% Similarity=0.148 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCC-CCCCHHHHHHHHH
Q ss_conf 687999999983814689998519999999999998613899989999999999999851---045-6653488999976
Q gi|254780689|r 24 QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIA---GIG-LTENSKNIESILE 99 (345)
Q Consensus 24 g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~---~~~-~~g~~~~~~~lL~ 99 (345)
.||=.|.+|.-|.+..|+.+|..|++.=-..|+.-||.|+.++|+.+.+|-+=....+.+ ... -.||.+.+-.+++
T Consensus 138 HPQtiAlIL~hL~~~~Aa~iLs~l~~e~~~~v~~RiA~~g~~sP~vv~ev~~VLe~kL~s~~~~~~~~~GGv~~vaEi~N 217 (346)
T TIGR00207 138 HPQTIALILSHLDPAQAAEILSLLPEEVQAEVARRIAVMGRTSPEVVKEVERVLEKKLESLTSEDYTKVGGVRAVAEIIN 217 (346)
T ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHC
T ss_conf 86799999985183047888730685689999999985078678999999999977622442123554162578999873
Q ss_pred HCCCHHHHHHHHHHHHCCCCC-------CCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHH
Q ss_conf 114979999997544113445-------6756789741998999999840386478899995788899999983798999
Q gi|254780689|r 100 EGLEQNELEKLLNKSDISQEN-------NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIH 172 (345)
Q Consensus 100 ~al~~d~a~~ll~~~~~~~~~-------~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r 172 (345)
.. +....+.++..++...+. .--.|+-+=.+|...+-.+|+.=.-+-.++=|=--+.+..=++|..+.....
T Consensus 218 ~~-~~~~ek~~l~~~e~~D~~LA~~Ik~~MF~FEdiV~lDdraIqr~L~~vd~~~L~~ALK~~~~~l~ek~l~NMS~Raa 296 (346)
T TIGR00207 218 LL-DRKTEKTILESLEEVDPELAEEIKKKMFVFEDIVKLDDRAIQRVLREVDKEDLLLALKTAEKPLREKFLNNMSQRAA 296 (346)
T ss_pred CC-CCCHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 57-87159999999983184789999972364011543030899999998433556778512662478898631548999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999984048999
Q gi|254780689|r 173 ADIMKRTVNLPKIS 186 (345)
Q Consensus 173 ~ev~~Ria~l~~v~ 186 (345)
.-..--|..+++|-
T Consensus 297 ~~l~edm~flGpvr 310 (346)
T TIGR00207 297 EILKEDMEFLGPVR 310 (346)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999887268844
No 10
>PRK05934 type III secretion system protein; Validated
Probab=97.81 E-value=4.9e-05 Score=53.02 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=46.3
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 4199899999984038647889999578889999998379899999999
Q gi|254780689|r 129 KETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMK 177 (345)
Q Consensus 129 ~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~ 177 (345)
+.++...|..+++.|.|.-||+|||||||.+|-+++.+||++++..|++
T Consensus 290 qgINI~KLiEi~qkESPEKi~lILSYLDpkKAeelln~LPEd~khqVLK 338 (341)
T PRK05934 290 QGINIPKLIEIMQKESPEKIALILSYLDPKKAEELLNKLPEDMKHQVLK 338 (341)
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
T ss_conf 0388799999986418687658988438175999998690989887884
No 11
>pfam03448 MgtE_N MgtE intracellular N domain. This domain is found at the N-terminus of eubacterial magnesium transporters of the MgtE family pfam01769. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.
Probab=97.33 E-value=0.0047 Score=39.87 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 497999999754411344567567897419989999998403864788999957888999999837989999999
Q gi|254780689|r 102 LEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM 176 (345)
Q Consensus 102 l~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~ 176 (345)
++++....+++.+. .....+.|..++++....++..=++.-++-++++|+++-++.+|..||++.+..|+
T Consensus 13 l~~~~r~~~~~~l~-----~~~~~~il~~l~~~~~~~il~~l~~~~~~~il~~m~~Dd~~dll~~L~~~~~~~iL 82 (102)
T pfam03448 13 LPPEERLALLRLLP-----PERAAEVLEELDEDVQAELLEALPPEELAELLEELDPDDAADLLEELPEEVREELL 82 (102)
T ss_pred CCHHHHHHHHHHCC-----HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 99999999998789-----65599999817999999999868989899999818927899999879999999999
No 12
>pfam03448 MgtE_N MgtE intracellular N domain. This domain is found at the N-terminus of eubacterial magnesium transporters of the MgtE family pfam01769. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.
Probab=96.88 E-value=0.0075 Score=38.54 Aligned_cols=95 Identities=23% Similarity=0.430 Sum_probs=53.4
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 98999999840386478899995788899999983798999999999840489998999999999999722344212363
Q gi|254780689|r 132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNSNTSTG 211 (345)
Q Consensus 132 ~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G 211 (345)
.|..+|.++..=.|+-...++..++++.++.|+..++++.+.+++..+ ++.-+..+=..+ .
T Consensus 2 hp~diA~~le~l~~~~r~~~~~~l~~~~~~~il~~l~~~~~~~il~~l------~~~~~~~il~~m-------------~ 62 (102)
T pfam03448 2 HPADIAELLEELPPEERLALLRLLPPERAAEVLEELDEDVQAELLEAL------PPEELAELLEEL-------------D 62 (102)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC------CHHHHHHHHHHC-------------C
T ss_conf 889999999819999999999878965599999817999999999868------989899999818-------------9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999501775779999999998659999999974
Q gi|254780689|r 212 PEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPK 248 (345)
Q Consensus 212 ~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~ 248 (345)
..-+|+|++.++.+..+.+|..+...+ .+.|++.
T Consensus 63 ~Dd~~dll~~L~~~~~~~iL~~l~~~~---r~~i~~l 96 (102)
T pfam03448 63 PDDAADLLEELPEEVREELLSLLDPEE---REEIREL 96 (102)
T ss_pred CHHHHHHHHHCCHHHHHHHHHCCCHHH---HHHHHHH
T ss_conf 278999998799999999998599999---9999998
No 13
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.061 Score=32.55 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999998381468999851999999999999861------389998999999999999985
Q gi|254780689|r 27 KATAILLAMEKQVSGKLLRHFTHAELKEIVASAKL------LPEISPEELEDIIDEFESQFI 82 (345)
Q Consensus 27 KAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~------l~~i~~~~~~~vl~EF~~~~~ 82 (345)
+..+++..++++.++++|.+++++--..|...|.. +...+++++-.+++|+-....
T Consensus 47 ~r~~v~~ll~~~~~~~v~~~l~~~~~~~ii~~~~~~~~~~~ie~m~~Dd~~~ll~elp~~~~ 108 (451)
T COG2239 47 ERVVVWRLLPKEDAAEVLGELDDEVREEIIEALSDEELAAAIEELDIDDAADLLDELPDEVR 108 (451)
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHH
T ss_conf 88888873887677899983298689999985599999999872692778999986877789
No 14
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.02 Score=35.67 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=59.2
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5678974199899999984038647889999578889999998379899999999984048999
Q gi|254780689|r 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKIS 186 (345)
Q Consensus 123 ~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~ 186 (345)
..-+..+.|+|+-.|..|.+=+|+..+-|+..|+|.+++.||+.++++....++.+|+.....+
T Consensus 123 klv~iY~~Mkp~~aA~~le~l~~e~Aa~Il~~L~~r~~~~ILakMdPekAA~lt~~i~~~~~~~ 186 (192)
T COG3334 123 KLVKIYSKMKPDAAAAILENLPDEEAAAILMKLKPRKLGLILAKMDPEKAATLTELIASPPRNN 186 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 7999998079166899998389888999998388218999987389888999999986578766
No 15
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.37 Score=27.38 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
Q ss_conf 88999976114979999997544113445675678974199899999984038647889999578889999998379899
Q gi|254780689|r 92 KNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKI 171 (345)
Q Consensus 92 ~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~ 171 (345)
...+.++-+.++.+.+..++...+ .. .-++.+..++++.++..+..=+|--.+-++.-+|.+...++|..++++.
T Consensus 45 ~~~r~~v~~ll~~~~~~~v~~~l~--~~---~~~~ii~~~~~~~~~~~ie~m~~Dd~~~ll~elp~~~~~~lL~~l~~~~ 119 (451)
T COG2239 45 GRERVVVWRLLPKEDAAEVLGELD--DE---VREEIIEALSDEELAAAIEELDIDDAADLLDELPDEVRDELLSLLDPEE 119 (451)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHCC--HH---HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCHHH
T ss_conf 998888887388767789998329--86---8999998559999999987269277899998687778999998189999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780689|r 172 HADIMK 177 (345)
Q Consensus 172 r~ev~~ 177 (345)
|..+-.
T Consensus 120 r~~v~~ 125 (451)
T COG2239 120 RARVRQ 125 (451)
T ss_pred HHHHHH
T ss_conf 999998
No 16
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=0.47 Score=26.65 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=28.8
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 419989999998403864788999957888999999837989999999
Q gi|254780689|r 129 KETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM 176 (345)
Q Consensus 129 ~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~ 176 (345)
..-..+-|....++=.|--+|-+|..|+++.|+.|+..|++.....|+
T Consensus 117 ~qae~~klv~iY~~Mkp~~aA~~le~l~~e~Aa~Il~~L~~r~~~~IL 164 (192)
T COG3334 117 KQAEDGKLVKIYSKMKPDAAAAILENLPDEEAAAILMKLKPRKLGLIL 164 (192)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 786562799999807916689999838988899999838821899998
No 17
>pfam09126 NaeI Restriction endonuclease NaeI. Members of this family adopt a secondary structure consisting of nine alpha-helices, six 3-10 helices and 13 beta-strands. They bind two GCC-CGG recognition sequences to cleave DNA into blunt-ended products.
Probab=80.09 E-value=4.6 Score=20.13 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=47.6
Q ss_pred HCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHH-------HHHHCCCEECCCC
Q ss_conf 538898999999961008--99999999985005899989999--99999999999-------9998697951888
Q gi|254780689|r 279 LHGTSIETQNAILHCLSN--RQRKIIEENIVLNDSSIAPREVA--MARRSIVQEAI-------SLLKTNKIELSNP 343 (345)
Q Consensus 279 Lkga~~e~~e~il~nmS~--Ra~~~l~eel~~~~g~v~~~dve--~Aq~~I~~~~r-------~L~~~G~I~l~~~ 343 (345)
|.+.+++.+++||++=|. |.++.++.=- . -||....|+ +-|++.+..+| .|..+|-|.|+.-
T Consensus 162 Ll~l~~~~r~~Ifa~~sG~~R~~eLFR~~q--g-~~I~R~vv~tVa~Q~D~mrRVR~~ggaR~~L~~EGIlilgg~ 234 (291)
T pfam09126 162 LLHLPDDVREAIFAPKSGNARMAELFRRVQ--G-RPIPRDVVEAVARQQDFMRRVRSDGGARDVLRPEGILLLGGQ 234 (291)
T ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHHHH--C-CCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEECCC
T ss_conf 324998899998548616799999999984--8-566689999988121065564237755666263747997477
No 18
>PHA01513 mnt Mnt
Probab=64.96 E-value=10 Score=17.79 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 8379899999999984-0489998999999999999722344212363789999950177577
Q gi|254780689|r 165 LRFPNKIHADIMKRTV-NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQ 226 (345)
Q Consensus 165 ~~Lp~e~r~ev~~Ria-~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G~~~vA~Iln~l~~~~ 226 (345)
-+||.+++..+-.|-- +=.+++.++++.+++.|.+- +..+.-.+-.+++||.....-+..
T Consensus 10 lRlP~elk~Ki~~RAk~NgRSmNaEivqiv~dalskp--spvsgYrddaERlAd~qse~~k~~ 70 (82)
T PHA01513 10 LRLPYELKEKVKQRAKANGRSLNAELVQIVADSLEKP--TPVIGYRDDAEREADIVSREIQEL 70 (82)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4787999999999998758511199999999985189--987433228999889999999999
No 19
>PRK09273 hypothetical protein; Provisional
Probab=60.65 E-value=12 Score=17.29 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCH
Q ss_conf 899850997899999830988899998538898999999961008
Q gi|254780689|r 252 FDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSN 296 (345)
Q Consensus 252 FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~ 296 (345)
+.++-.+..+++-.+|+.+|++.+-.|++| +.+++.||.|=..
T Consensus 157 L~~vk~~t~k~~~~iLk~iD~~llk~ai~g--e~F~e~ff~n~q~ 199 (211)
T PRK09273 157 LNEVKAATYKDYLDILKAIDQELLKTAISG--ERFQEYFFANCQD 199 (211)
T ss_pred HHHHHHHHCCCHHHHHHHCCHHHHHHHHCC--HHHHHHHHHCCCH
T ss_conf 999999863659999986299999998642--7799999964873
No 20
>COG4086 Predicted secreted protein [Function unknown]
Probab=58.85 E-value=13 Score=17.09 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHCCCHHHHHHHHHC
Q ss_conf 89741998999999840
Q gi|254780689|r 126 DHLKETDPGVIADFLSK 142 (345)
Q Consensus 126 ~~L~~~~~~~La~~L~~ 142 (345)
+...|+.|++.++-|..
T Consensus 111 ~nI~~vt~eMYanAL~T 127 (299)
T COG4086 111 GNITVVTPEMYANALVT 127 (299)
T ss_pred EEEEEECHHHHHHHHHH
T ss_conf 31788778999999986
No 21
>pfam12408 DUF3666 Ribose-5-phosphate isomerase. This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with pfam02502. There are two completely conserved residues (D and F) that may be functionally important.
Probab=58.11 E-value=14 Score=17.01 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 789999983098889999853889899999996100
Q gi|254780689|r 260 SHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLS 295 (345)
Q Consensus 260 ~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS 295 (345)
-+++-.+|+++|++-+-.|+.| +.+++.||.|=-
T Consensus 4 ~kdll~iLk~iDqdLvK~AvsG--e~Fqe~FF~ncq 37 (48)
T pfam12408 4 YKDLLDILKAIDQDLVKGAVSG--ERFQECFFANCQ 37 (48)
T ss_pred HHHHHHHHHHHCHHHHHHHHCH--HHHHHHHHHCCC
T ss_conf 4569999999689999988431--999999984388
No 22
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase; InterPro: IPR010249 This entry represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the 'dark' protochlorophyllide reductase enzymes BchN, BchB and BchL . This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.; GO: 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=44.17 E-value=22 Score=15.58 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHH-HHHHHHHHCCHHHHHHHHHH-CCHHH
Q ss_conf 99997611497999999754411344567567897419989999998403864-78899995788899999983-79899
Q gi|254780689|r 94 IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQ-TTAYVLSMMPPSIGASVLLR-FPNKI 171 (345)
Q Consensus 94 ~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQ-tiAlILs~L~~~~Aa~VL~~-Lp~e~ 171 (345)
.--.|+-++|++.++++|.+.--.-..+.-+=+.|..-+-..|...|+++||. -.|-||..---..|-.||.. .|.-.
T Consensus 10 ~v~aleaayG~~a~~~~L~~~G~G~l~~~~ps~MlpEs~f~~L~~~Lr~~lge~aaa~~L~esG~~Ta~Y~l~~RiP~p~ 89 (189)
T TIGR02019 10 TVAALEAAYGKEAVEKLLKKIGRGYLLEALPSEMLPESKFSALVAALRKELGESAAADVLKESGEATAKYVLKNRIPVPI 89 (189)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99998613685689999998388855887875567600178999999975695401689999878898887760698778
Q ss_pred HH
Q ss_conf 99
Q gi|254780689|r 172 HA 173 (345)
Q Consensus 172 r~ 173 (345)
|.
T Consensus 90 q~ 91 (189)
T TIGR02019 90 QR 91 (189)
T ss_pred HH
T ss_conf 99
No 23
>pfam11865 DUF3385 Domain of unknown function (DUF3385). This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 160 to 172 amino acids in length. This domain is found associated with pfam00454, pfam02260, pfam02985, pfam02259 and pfam08771.
Probab=42.20 E-value=24 Score=15.38 Aligned_cols=139 Identities=13% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
Q ss_conf 03864788999957888999999837989999999998404899989999999999997223442123637899999501
Q gi|254780689|r 142 KEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINE 221 (345)
Q Consensus 142 ~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G~~~vA~Iln~ 221 (345)
.+||+-..+++.-|..++ ...+|.|+++-++.++.++|-..+.+......... ....+......-..+.
T Consensus 6 ~~YP~LL~~L~~iLk~e~--------s~~iR~E~lr~lGiLGALDP~~~k~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 74 (160)
T pfam11865 6 LDYPELLGVLLNILKTET--------SWEVRRETLKLLGILGALDPYKHKEIERNLSDGQS---AESTNKCTDILLLMKG 74 (160)
T ss_pred HHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHCC
T ss_conf 777899999999986078--------78899999999877057677999872145787665---3456887428888536
Q ss_pred CCHHHHH----HHHHHHHH--HHHHHH----HHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7757799----99999998--659999----9999741578998509978999998309888999985388989999999
Q gi|254780689|r 222 LEKPQVD----KLLTSLQE--VSKEAF----DKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAIL 291 (345)
Q Consensus 222 l~~~~~~----~iL~~L~~--~d~~la----~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il 291 (345)
+....++ -.+..|-. +||.+. .-|+..||.|--+ .-+. -..|..|-+ .+.-.++.+++.++|.+|
T Consensus 75 ~~~~~eeyyptvvi~~Lm~IL~D~sLs~~h~~vvqai~~Ifksl---g~~c-v~~l~qiiP-~~l~virt~~~~l~e~~~ 149 (160)
T pfam11865 75 LSPSSDEYYPTVVINSLLKILKDPSLSSHHTAVVQAIMNIFKSL---GLKC-VPFLPQVIP-PFLSVIRTLPASLLEFYF 149 (160)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC---CCCC-HHHHHHHHH-HHHHHHHHCCHHHHHHHH
T ss_conf 89838889999999999999838337889999999999999806---7430-210788889-999999709916899999
Q ss_pred HHCCH
Q ss_conf 61008
Q gi|254780689|r 292 HCLSN 296 (345)
Q Consensus 292 ~nmS~ 296 (345)
..++.
T Consensus 150 ~qL~~ 154 (160)
T pfam11865 150 QQLST 154 (160)
T ss_pred HHHHH
T ss_conf 99998
No 24
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075 In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=37.31 E-value=28 Score=14.89 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHH---HHHHHHHHHHHHCCCEECC
Q ss_conf 9999---9999999999986979518
Q gi|254780689|r 319 AMAR---RSIVQEAISLLKTNKIELS 341 (345)
Q Consensus 319 e~Aq---~~I~~~~r~L~~~G~I~l~ 341 (345)
-+|+ ..|++.+++++++|+.+|+
T Consensus 73 IAa~rvk~p~~~~V~~~A~~G~pVLG 98 (264)
T TIGR01737 73 IAALRVKSPIMQEVREFAEKGKPVLG 98 (264)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99875030889999999955982899
No 25
>PRK13901 ruvA Holliday junction DNA helicase motor protein; Provisional
Probab=37.22 E-value=29 Score=14.88 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHH
Q ss_conf 1344567567897419989999998403864788999957888999999837989
Q gi|254780689|r 116 ISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNK 170 (345)
Q Consensus 116 ~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e 170 (345)
+.+-.+...+..|+.++|+.++..+.++.+.+..-| .-+-+..|.+|+-.|-..
T Consensus 77 VsGIGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~v-pGIG~KtA~rIi~ELk~K 130 (196)
T PRK13901 77 VDGIGPRAALRVLSGIKYNEFRDAIDREDIELISKV-KGIGNKMAGKIFLKLRGK 130 (196)
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 588268999999757999999999992899998319-995899999999999765
No 26
>PRK12435 ferrochelatase; Provisional
Probab=37.07 E-value=13 Score=17.21 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8799999998381468999851999999999999861389998999999999999
Q gi|254780689|r 25 KDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFES 79 (345)
Q Consensus 25 ~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~ 79 (345)
.+|.|+||++||-.. +.++|+.--..+..-+.++.+.+..+...|..
T Consensus 3 k~K~gVLL~nlG~P~--------s~~dV~pyL~~i~~gr~p~~~~l~~~~~~Y~~ 49 (316)
T PRK12435 3 KKKIGLLVMAYGTPE--------SLDDVEAYYTHIRHGRKPSEEALEDLIGRYKA 49 (316)
T ss_pred CCCEEEEEEECCCCC--------CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 885899998789999--------87689999999706899989999999999998
No 27
>KOG1114 consensus
Probab=35.91 E-value=30 Score=14.75 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHCCC---HHHHHHHHHCCCH---HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH-HH
Q ss_conf 78974199---8999999840386---47889999578889999998379899999999984048999899999999-99
Q gi|254780689|r 125 WDHLKETD---PGVIADFLSKEHP---QTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEK-CI 197 (345)
Q Consensus 125 ~~~L~~~~---~~~La~~L~~EhP---QtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~-~L 197 (345)
.++|.+++ -+.+.++++.+|| -...+.|.+| +... +...+...|+-.+=+....+++.++. .|
T Consensus 1083 v~~l~kl~~e~~~k~~~~l~s~ypd~lpll~~~l~kl--------~~~s--D~~kE~~~ki~eIl~~A~~Vi~~~D~eaL 1152 (1304)
T KOG1114 1083 VSWLSKLADEEAEKIYNYLKSSYPDYLPLLEVRLAKL--------MQKS--DAVKETNKKIEEILSAADSVIQEIDTEAL 1152 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--------HHHC--CCCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 8999876189999999999876765340799999874--------0010--12357788899999887888876068999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9972234421236378999995017757799999999986599999
Q gi|254780689|r 198 VEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFD 243 (345)
Q Consensus 198 ~~~l~~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~ 243 (345)
...+.- +.+....++.|.+.|+... +.+++.|-+.-.-++.
T Consensus 1153 ~~y~~~----k~D~r~da~klk~~me~qk-~tli~AL~kKg~a~ak 1193 (1304)
T KOG1114 1153 ARYYAL----KEDTRPDAVKLKKKMEKQK-DTLIDALVKKGEAFAK 1193 (1304)
T ss_pred HHHHHC----CCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 999861----4677641889988888888-9999999973068766
No 28
>pfam11513 TA0956 Thermoplasma acidophilum protein TA0956. TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif.
Probab=35.00 E-value=15 Score=16.78 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHCCCHHHHHHHHHHCCHHHHH--HHHHHCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 8403864788999957888999--999837989999999998404899989
Q gi|254780689|r 140 LSKEHPQTTAYVLSMMPPSIGA--SVLLRFPNKIHADIMKRTVNLPKISPY 188 (345)
Q Consensus 140 L~~EhPQtiAlILs~L~~~~Aa--~VL~~Lp~e~r~ev~~Ria~l~~v~~e 188 (345)
+++-||-||-+++++..-..+. .|+..-..+.--+.+.|-|+.+.+-|+
T Consensus 11 m~~~HPtTICVvm~kF~dSf~elidv~~~~~~Del~dFI~~yARTDEImPE 61 (110)
T pfam11513 11 MKEQHPTTICVVMDKFLDSFKELIDVVTSPDIDELMDFISRYARTDEIMPE 61 (110)
T ss_pred ECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 056688348886898899999999873388878999999986321325777
No 29
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair]
Probab=34.54 E-value=31 Score=14.60 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=72.9
Q ss_pred HHHCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 44037922368687999999983814689998519999999999998613899--9899999999999998510456653
Q gi|254780689|r 13 LYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEI--SPEELEDIIDEFESQFIAGIGLTEN 90 (345)
Q Consensus 13 ~~~~~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i--~~~~~~~vl~EF~~~~~~~~~~~g~ 90 (345)
+-+.++|-+++.-++-=--+++++.+.+...+..+++..++.+...-.+=+-- |-...-..++.|++-+...+-+..+
T Consensus 19 ~Er~lS~hTl~~Y~rqL~~l~~~~~q~~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLSa~R~f~~wLv~~g~l~~n 98 (299)
T COG4973 19 VERQLSPHTLANYRRQLEALIALLAQMGLGSWQQLDPADVRAFVARSHRRGLSARSLARRLSALRSFYDWLVKQGELKAN 98 (299)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 86146888899999999999999997276566656999999999998318855778999999999999999872764668
Q ss_pred H-H-----HHHHHHHHCCCHHHHHHHHH
Q ss_conf 4-8-----89999761149799999975
Q gi|254780689|r 91 S-K-----NIESILEEGLEQNELEKLLN 112 (345)
Q Consensus 91 ~-~-----~~~~lL~~al~~d~a~~ll~ 112 (345)
. . ...+-|.++++.|++..+++
T Consensus 99 Pa~GvsaPK~~r~LPk~ld~d~~~~ll~ 126 (299)
T COG4973 99 PAKGVSAPKQPRHLPKNLDVDEANRLLD 126 (299)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 6456889887443777689999999966
No 30
>pfam11239 DUF3040 Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=33.13 E-value=33 Score=14.46 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_conf 577999999999----865999999997
Q gi|254780689|r 224 KPQVDKLLTSLQ----EVSKEAFDKVRP 247 (345)
Q Consensus 224 ~~~~~~iL~~L~----~~d~~la~~Ir~ 247 (345)
++.|+++|++|| ++||+++..++.
T Consensus 4 Se~Eqr~L~eiE~~L~~eDP~fa~~~~~ 31 (82)
T pfam11239 4 SEHEQRRLEEIERALYAEDPKFAAAVRS 31 (82)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 8899999999999998439799997515
No 31
>pfam06070 Herpes_UL32 Herpesvirus large structural phosphoprotein UL32. The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins.
Probab=33.07 E-value=33 Score=14.45 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-CCCHH---
Q ss_conf 99999999999972234--4212363789999950177577999999999865999999997415789985-09978---
Q gi|254780689|r 188 YIQKTIEKCIVEMLPQS--NSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLI-TLSSH--- 261 (345)
Q Consensus 188 ev~~~ie~~L~~~l~~~--~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~-~l~~~--- 261 (345)
...+.+++.|.. |+.. ...-..|. ...-+|- -.....+|-++|+ .++++||.|.-+- +++-.
T Consensus 121 ~~~~vvlr~l~~-La~~~~~~~l~~G~--~~~FVNL-r~ee~~~le~NL~--------~a~~NMl~ytv~~l~d~r~eN~ 188 (777)
T pfam06070 121 PDVDVVLRALVS-LARLSECQPLAWGT--EIGFVNL-RAEEVQELEENLR--------AARNNMLVYTVLDLNDPRNENG 188 (777)
T ss_pred CHHHHHHHHHHH-HHHHCCCCCCCCCC--CCCEEEC-CHHHHHHHHHHHH--------HHHHCCEEEEEECCCCCCCCCC
T ss_conf 189999999999-88613688876666--3221425-7899999999999--------9985626899741367001364
Q ss_pred -HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf -9999983098889999853889899999996100899999999
Q gi|254780689|r 262 -DLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEE 304 (345)
Q Consensus 262 -~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~e 304 (345)
-+..+.+=|=.-.|++||+++=.++.++.|..+-+..+..+++
T Consensus 189 ~LV~avNKLvYLGrli~al~~SW~eLek~cL~rI~e~~k~Lvk~ 232 (777)
T pfam06070 189 PLVNAVNKLVYLGRLILALSTSWRELEKKCLDRINELCKRLVKE 232 (777)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28888888999889999987689999999999999999999999
No 32
>TIGR00444 mazG MazG family protein; InterPro: IPR011551 This group of prokaryotic proteins has no known function. It includes the uncharacterised protein MazG in Escherichia coli..
Probab=32.00 E-value=34 Score=14.35 Aligned_cols=134 Identities=12% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH-----HHCCCCCCC
Q ss_conf 999984038647889999578889999998379899999999984048--9998999999999999-----722344212
Q gi|254780689|r 136 IADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLP--KISPYIQKTIEKCIVE-----MLPQSNSNT 208 (345)
Q Consensus 136 La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~--~v~~ev~~~ie~~L~~-----~l~~~~~~~ 208 (345)
|+.=|..-||++= +--...-+.+||++=..=...| |-.+-+ ++-...++.|-++|=. ++. ..+.+
T Consensus 79 is~KlvRRHPHVF----~d~~v~d~~evlA~W~~iK~~E---k~~~~~~tPllss~Ld~~p~tLPaL~~A~Klq-kkaA~ 150 (253)
T TIGR00444 79 ISEKLVRRHPHVF----ADVKVEDEEEVLARWEEIKAKE---KALKEEETPLLSSLLDSVPRTLPALMRAAKLQ-KKAAK 150 (253)
T ss_pred HHHHHHCCCCCCC----CCCCCCCHHHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH-HHHHC
T ss_conf 8752212788605----6542145476785099999997---25783333368887741466563456866776-88732
Q ss_pred CC-HHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCH
Q ss_conf 36-37899999501775779999999998659---999999974157899850997899999830988899998538898
Q gi|254780689|r 209 ST-GPEKVANLINELEKPQVDKLLTSLQEVSK---EAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSI 284 (345)
Q Consensus 209 ~~-G~~~vA~Iln~l~~~~~~~iL~~L~~~d~---~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~ 284 (345)
+| -=..|.+|...+ ...-+++...+...+. ++-+++-.++|+.=+|.|-= .++++ .||++||+
T Consensus 151 VGFdW~~v~~v~~Kv-~EEl~E~~~e~~~~~~~~~Kl~~E~GDLLFalvNlAR~y---------~~~ae---~AL~~aN~ 217 (253)
T TIGR00444 151 VGFDWEDVSPVWDKV-SEELEEVKSEVSEADVEHNKLEAELGDLLFALVNLARHY---------KLDAE---EALRKANE 217 (253)
T ss_pred CCCCCCCCCHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCHH---HHHHHHHH
T ss_conf 789866432157877-888899999985260357899999707999999999871---------89887---99988549
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780689|r 285 ETQNAI 290 (345)
Q Consensus 285 e~~e~i 290 (345)
.++.+|
T Consensus 218 kF~rRf 223 (253)
T TIGR00444 218 KFERRF 223 (253)
T ss_pred HHHHHH
T ss_conf 999999
No 33
>TIGR01398 FlhA flagellar biosynthesis protein FlhA; InterPro: IPR006301 These sequences describe the flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. ; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=31.83 E-value=31 Score=14.62 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5779999999998659999999974
Q gi|254780689|r 224 KPQVDKLLTSLQEVSKEAFDKVRPK 248 (345)
Q Consensus 224 ~~~~~~iL~~L~~~d~~la~~Ir~~ 248 (345)
++..+++|+.+.+.+|.+.+++...
T Consensus 518 r~ev~~LLd~l~~~~PklVee~~P~ 542 (713)
T TIGR01398 518 RQEVQNLLDRLKEEYPKLVEELIPD 542 (713)
T ss_pred HHHHHHHHHHHHHHCCEEHHHCCCC
T ss_conf 8999999986013267400113889
No 34
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=31.73 E-value=35 Score=14.31 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99985199999999999986138999899999999999998510456653488999976114979999997
Q gi|254780689|r 41 GKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLL 111 (345)
Q Consensus 41 a~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll 111 (345)
+..=++++++|.+.|...+...+..++.....+..-|...+..- -..|...+.+.+...++++.....+
T Consensus 13 A~ADG~i~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~~~~~~ 81 (111)
T cd07176 13 AAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL--RPEGLAALLKAAAKLLPPELRETAF 81 (111)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98647999999999999986384468777999999999999872--7576999999999866887899999
No 35
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.69 E-value=36 Score=14.20 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=5.9
Q ss_pred HHHHHHHHCCHHHHHHHH
Q ss_conf 999999610089999999
Q gi|254780689|r 286 TQNAILHCLSNRQRKIIE 303 (345)
Q Consensus 286 ~~e~il~nmS~Ra~~~l~ 303 (345)
++...|---|.|-.+.+-
T Consensus 264 v~Np~fD~TP~~~Id~iI 281 (301)
T COG1184 264 VRNPAFDVTPPEYIDAII 281 (301)
T ss_pred CCCCCCCCCCHHHHHEEE
T ss_conf 344265789588743123
No 36
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=30.03 E-value=37 Score=14.12 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 899999999999999999986979518
Q gi|254780689|r 315 PREVAMARRSIVQEAISLLKTNKIELS 341 (345)
Q Consensus 315 ~~dve~Aq~~I~~~~r~L~~~G~I~l~ 341 (345)
-.|++++.+.|+..+++-..+|.-.+.
T Consensus 271 n~di~etv~~il~~i~~~~~r~~~~~~ 297 (299)
T COG2074 271 NDDIDETVDRILEDIRKRTVRGLSLLE 297 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 531999999999999999888765026
No 37
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=27.38 E-value=41 Score=13.83 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=14.1
Q ss_pred HCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 104566534889999761149799999975
Q gi|254780689|r 83 AGIGLTENSKNIESILEEGLEQNELEKLLN 112 (345)
Q Consensus 83 ~~~~~~g~~~~~~~lL~~al~~d~a~~ll~ 112 (345)
....+-|+...--...=.+.-+++|.+||.
T Consensus 41 DEL~LDGNprLNLAsFV~Twme~EA~KLm~ 70 (493)
T TIGR01788 41 DELSLDGNPRLNLASFVTTWMEPEAEKLMD 70 (493)
T ss_pred HHCCCCCCHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 540457762223213247877767899997
No 38
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=26.12 E-value=43 Score=13.68 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 689998519999999999998613899989999999999999851045665348899997611497999999754
Q gi|254780689|r 39 VSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNK 113 (345)
Q Consensus 39 ~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~~ 113 (345)
..+..=.++++.|...|.....+.-.+++++.+.++............ .....+.+...++.+.=-.++..
T Consensus 8 eva~aDg~~~~~E~~~i~~~l~~~f~l~~~~~~~l~~~a~~~~~~~~~----l~~ft~~in~~~~~~~R~~li~~ 78 (104)
T cd07313 8 EVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPD----LYEFTSLIKEHFDYEERLELVEA 78 (104)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999877487999999999999998785789999999999998865734----99999987333898999999999
No 39
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase; InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=26.00 E-value=8.1 Score=18.50 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=73.3
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--------HCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999837989999999998404899989999999999997--------22344212363789999950177577999999
Q gi|254780689|r 161 ASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEM--------LPQSNSNTSTGPEKVANLINELEKPQVDKLLT 232 (345)
Q Consensus 161 a~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~--------l~~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~ 232 (345)
..-|..+|.+.-.|++.++|=.=++--|=+..+|.+|+.- .+++.....+-.+.=.|++..+..-+.++|+
T Consensus 40 ~~~l~~~d~~~L~d~~~~~aivvP~knE~L~llegVL~~IP~e~li~vvSnS~Re~vdRF~~EveL~r~f~~~~~~~i~- 118 (394)
T TIGR02460 40 AVSLKALDREELEDVLEKTAIVVPVKNEKLKLLEGVLSGIPHECLIIVVSNSKREPVDRFKMEVELVREFSRLTERKIL- 118 (394)
T ss_pred CCCCCCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEE-
T ss_conf 4431206836799885085788711147414331134227883768888667489985667899999999986189518-
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99986599999999741578998509
Q gi|254780689|r 233 SLQEVSKEAFDKVRPKVFLFDDLITL 258 (345)
Q Consensus 233 ~L~~~d~~la~~Ir~~mF~FeDl~~l 258 (345)
-+-+.||.+|+..|+- -+.+++.-
T Consensus 119 i~hQ~DP~LA~Al~~~--~y~~~~~~ 142 (394)
T TIGR02460 119 IIHQKDPALAEALKEV--GYESILGE 142 (394)
T ss_pred EEECCCHHHHHHHHCC--CCCCCCCC
T ss_conf 9972887899997338--88675579
No 40
>pfam05099 TerB Tellurite resistance protein TerB. This family contains the TerB tellurite resistance proteins from a a number of bacteria.
Probab=25.38 E-value=45 Score=13.59 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH-HCCC
Q ss_conf 899985199999999999986138999899999999999998510456653488999976114979999997544-1134
Q gi|254780689|r 40 SGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKS-DISQ 118 (345)
Q Consensus 40 Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~-~~~~ 118 (345)
.++.=+++++.|++.+...+...-.++++..+.++..|........+ .....+.+...++.+....++.-. .+.-
T Consensus 33 vA~aDG~i~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~----l~~~~~~i~~~~~~~~r~~ll~~lw~va~ 108 (140)
T pfam05099 33 VAKADGQVDEEERQAIRRLLRSRFGLDPEEAAALIELAEEAEQEAPD----LYEFTRAIKDHFDYEQRLALLEALWEVAL 108 (140)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99877898999999999999998689999999999999998745557----99999999997699999999999999999
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHCCCHHHH
Q ss_conf 456756789741998999999840386478
Q gi|254780689|r 119 ENNNSIWDHLKETDPGVIADFLSKEHPQTT 148 (345)
Q Consensus 119 ~~~~~~~~~L~~~~~~~La~~L~~EhPQti 148 (345)
.++ .++..+.-=-..++++|.=.|-+-+
T Consensus 109 ADG--~~d~~E~~~irria~lL~i~~~~f~ 136 (140)
T pfam05099 109 ADG--ELDEYEDALIRRVAELLGLSHADFI 136 (140)
T ss_pred HCC--CCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 847--9999999999999988398999999
No 41
>TIGR01078 arcA arginine deiminase; InterPro: IPR003876 This is a family of arginine deiminases, 3.5.3.6 from EC. The aligned region corresponds to the C-terminal of the protein. These enzymes catalyse the conversion of arginine + H2O to citrulline + NH3. Also found in this family is the Streptococcus anti tumor glycoprotein .; GO: 0016990 arginine deiminase activity, 0006527 arginine catabolic process.
Probab=24.67 E-value=29 Score=14.82 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH--HHH
Q ss_conf 99999998510456653488999976114979--999
Q gi|254780689|r 74 IDEFESQFIAGIGLTENSKNIESILEEGLEQN--ELE 108 (345)
Q Consensus 74 l~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d--~a~ 108 (345)
-++|.+.++.++- ..-++.+|+..++..- .|+
T Consensus 48 Hd~Fa~~Lr~~g~---eVl~L~dL~~E~l~~~~qea~ 81 (421)
T TIGR01078 48 HDQFANTLRDNGV---EVLYLEDLLAETLALPSQEAK 81 (421)
T ss_pred HHHHHHHHHHCCC---CEEEHHHHHHHHHHHHHHHHH
T ss_conf 8999999987897---287444599999850289999
No 42
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=24.63 E-value=46 Score=13.50 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC-CHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 378999995017757799999999986599999999741578998509-9789999983098889999853889899999
Q gi|254780689|r 211 GPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITL-SSHDLSIVFNNISLEVLGKALHGTSIETQNA 289 (345)
Q Consensus 211 G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l-~~~~l~~ll~evd~~~l~~ALkga~~e~~e~ 289 (345)
|-..+=.+|.+.+.+....+++.|-..-..++..=-.+ ++.=.++.. ++.....++..+-.....+++.--..-+.|+
T Consensus 165 GCrViQr~le~~~~~~~~~l~~~I~~~~~~L~~dq~GN-YVVQ~ile~g~~~~~~~I~~~l~~~~~~LS~~Kf~SnVVEk 243 (322)
T cd07920 165 GCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGN-YVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEK 243 (322)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04899999971999999999999999799996174115-99999998099889999999999999999833776699999
Q ss_pred HHHHCCHHHHHHHHHHH
Q ss_conf 99610089999999998
Q gi|254780689|r 290 ILHCLSNRQRKIIEENI 306 (345)
Q Consensus 290 il~nmS~Ra~~~l~eel 306 (345)
.+..-++..+..+-+++
T Consensus 244 cl~~~~~~~~~~ii~el 260 (322)
T cd07920 244 CLKHASKEERELIIDEI 260 (322)
T ss_pred HHHHCCHHHHHHHHHHH
T ss_conf 99869999999999998
No 43
>pfam04499 SAPS SIT4 phosphatase-associated protein. This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.
Probab=23.77 E-value=48 Score=13.39 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=5.5
Q ss_pred HHHHHHHHCCC
Q ss_conf 78999995017
Q gi|254780689|r 212 PEKVANLINEL 222 (345)
Q Consensus 212 ~~~vA~Iln~l 222 (345)
.+-+|++|+--
T Consensus 222 ~eLia~LL~~s 232 (380)
T pfam04499 222 VELIAELLHCS 232 (380)
T ss_pred HHHHHHHHHCC
T ss_conf 99999999268
No 44
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=23.40 E-value=49 Score=13.35 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHH
Q ss_conf 861389998999999999999985104-5665348899997611497999999754411344567567897419989999
Q gi|254780689|r 59 AKLLPEISPEELEDIIDEFESQFIAGI-GLTENSKNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIA 137 (345)
Q Consensus 59 m~~l~~i~~~~~~~vl~EF~~~~~~~~-~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La 137 (345)
|++-+....+.+..+.++++..+..-. ...|..+.+..++..++= .+++.. ......++..+|-.+--..+.
T Consensus 1 ~~~~~~p~~~~~~~Ly~~~~~~L~~~~~r~~~~~e~AEDivQd~Fl-----rl~~~~--~~~~~~~~~a~Lf~iarNl~~ 73 (172)
T PRK12523 1 MSSAQSPHSELVGALYRDHRGWLLAWLRRNLACRQRAEDLSQDTFV-----RLLGRP--ELPTPREPRAFLAAVAKGLMF 73 (172)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHHHCC--CCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999997399999999999999999999994988689999999999-----998277--656734599999999999999
Q ss_pred HHHHC
Q ss_conf 99840
Q gi|254780689|r 138 DFLSK 142 (345)
Q Consensus 138 ~~L~~ 142 (345)
++++.
T Consensus 74 D~~Rr 78 (172)
T PRK12523 74 DHFRR 78 (172)
T ss_pred HHHHH
T ss_conf 99998
No 45
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=23.17 E-value=49 Score=13.32 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7999999999865999999997415789985099789999983098889999-853889899999996100899999999
Q gi|254780689|r 226 QVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGK-ALHGTSIETQNAILHCLSNRQRKIIEE 304 (345)
Q Consensus 226 ~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~-ALkga~~e~~e~il~nmS~Ra~~~l~e 304 (345)
..+++++.|....+++-..----.+-|+++-.++......-....|+-.+|- ||.. |.|+|.|-...++.
T Consensus 78 sreELi~~LkriYg~lr~ed~VTIi~Fe~v~~~d~~i~~~~y~g~dp~eIA~laLe~---------l~~Ls~~~~~iL~~ 148 (188)
T COG2411 78 SREELIEELKRIYGELRDEDIVTIIEFEVVEKLDKPILDLPYEGRDPIEIARLALEH---------LDNLSERDKRILEL 148 (188)
T ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHCCCHHHHCCCCCCCHHHHHHHHHHH---------CCCCCHHHHHHHHH
T ss_conf 599999999998286788963899998870102625564557899989999999874---------32589889999999
Q ss_pred HHHH--------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 9850--------058999899999999999999999986979
Q gi|254780689|r 305 NIVL--------NDSSIAPREVAMARRSIVQEAISLLKTNKI 338 (345)
Q Consensus 305 el~~--------~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I 338 (345)
=++. ..|++..+ -.-|+-.-.....|-.+|-|
T Consensus 149 ~~~~gslRkaA~klgg~~kr--~~ir~vLrKay~~L~~rGli 188 (188)
T COG2411 149 FVEEGSLRKAAKKLGGLEKR--GRIRRVLRKAYHELKKRGLI 188 (188)
T ss_pred HHHCCCHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHCCCC
T ss_conf 99759299999995584120--38999999999999864479
No 46
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=22.97 E-value=50 Score=13.29 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHCCHHHHH----HHHH------CC-HHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 686879999999838146899----9851------99-999999999986--138999899999999999998510456
Q gi|254780689|r 22 LTQKDKATAILLAMEKQVSGK----LLRH------FT-HAELKEIVASAK--LLPEISPEELEDIIDEFESQFIAGIGL 87 (345)
Q Consensus 22 Ltg~eKAAilLl~LGee~Aa~----ilk~------l~-~~Ei~~i~~~m~--~l~~i~~~~~~~vl~EF~~~~~~~~~~ 87 (345)
|+|.+=.+||-++--+-+||+ ||+. |+ |.+++.=-.++. .-+.++.+.+...=.=|..-+.+=+|+
T Consensus 36 L~G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L~~~l~~LeGe~~~~~da~~L~~AR~LFArALETPGGL 114 (1190)
T TIGR02784 36 LAGTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADLRARLEALEGEAGKRPDAAKLAEARRLFARALETPGGL 114 (1190)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1787831000205558999999999875510444388868899999984254688888889999989999974178776
No 47
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=22.90 E-value=31 Score=14.60 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHCCCEECCCC
Q ss_conf 999999999998697951888
Q gi|254780689|r 323 RSIVQEAISLLKTNKIELSNP 343 (345)
Q Consensus 323 ~~I~~~~r~L~~~G~I~l~~~ 343 (345)
|.|..+++-|.+.|.|+|.+-
T Consensus 78 RRigEVa~L~~~~G~i~ltsf 98 (187)
T TIGR00455 78 RRIGEVAKLLVRNGVIVLTSF 98 (187)
T ss_pred CEEHHHHHHHHHCCEEEEEEE
T ss_conf 353264677764793899842
No 48
>pfam04751 DUF615 Protein of unknown function (DUF615). This family of bacterial proteins has no known function.
Probab=22.90 E-value=50 Score=13.28 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 68799999998381468999851999999999999861389998999999999999985104566534889999761149
Q gi|254780689|r 24 QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLE 103 (345)
Q Consensus 24 g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~ 103 (345)
..-|.|.-+-.||++ |-.|++.++.++ ++|. .+...+.+|... .++++...-..|+.+++... +
T Consensus 6 q~KRe~~~lq~LG~~-----L~~L~~~ql~~l--------~l~e-~L~~AI~~~~~i-~~~~A~rRQlqyIGKlmR~~-D 69 (153)
T pfam04751 6 ELKREAEALQDLGEE-----LVELSKDQLAKL--------PLDE-ELRDAIAEARRI-TKHEARRRQLQYIGKLMREE-D 69 (153)
T ss_pred HHHHHHHHHHHHHHH-----HHHCCHHHHHCC--------CCCH-HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHC-C
T ss_conf 999999999999999-----982999999629--------9988-999999997503-40068999999999998656-8
Q ss_pred HHHHHHHHHHH
Q ss_conf 79999997544
Q gi|254780689|r 104 QNELEKLLNKS 114 (345)
Q Consensus 104 ~d~a~~ll~~~ 114 (345)
.+....-++.+
T Consensus 70 ~e~i~~~l~~~ 80 (153)
T pfam04751 70 PEAIRAALDKL 80 (153)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999987
No 49
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=22.86 E-value=50 Score=13.28 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.9
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCH
Q ss_conf 78899995788899999983798
Q gi|254780689|r 147 TTAYVLSMMPPSIGASVLLRFPN 169 (345)
Q Consensus 147 tiAlILs~L~~~~Aa~VL~~Lp~ 169 (345)
..|+||+++-|+++..++.+=-+
T Consensus 162 ~~a~~la~~~P~~~~~~~~r~~~ 184 (232)
T cd03397 162 AWALILAELVPERADEILARGSE 184 (232)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 99999998787449999999999
No 50
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY; InterPro: IPR014154 This entry represents pleiotropic repressors in Bacillus subtilis, CodY, and other Firmicutes (low-GC Gram-positive bacteria) that respond to intracellular levels of GTP and branched chain amino acids. All have a C-terminal helix-turn-helix DNA-binding region..
Probab=22.74 E-value=46 Score=13.50 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHCCH---HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9961008---99999999985005899989----99999999999999999869795
Q gi|254780689|r 290 ILHCLSN---RQRKIIEENIVLNDSSIAPR----EVAMARRSIVQEAISLLKTNKIE 339 (345)
Q Consensus 290 il~nmS~---Ra~~~l~eel~~~~g~v~~~----dve~Aq~~I~~~~r~L~~~G~I~ 339 (345)
-.+++|= +|.+.|=+||+=.-|-+--| .|==.|.=||+..|+|+.+|-|+
T Consensus 177 Ai~TLSYSEL~AV~aIf~ELdG~EG~LvAS~IAD~vGITRSVIVNALRKlESAGvIE 233 (255)
T TIGR02787 177 AINTLSYSELEAVEAIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE 233 (255)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 987202889999999984228996627753020712660335545434442076413
No 51
>pfam11625 DUF3253 Protein of unknown function (DUF3253). This bacterial family of proteins has no known function.
Probab=22.45 E-value=51 Score=13.23 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHHHHHHHHHCCCEECCCCC
Q ss_conf 899999996100899999999985005899989999999---------9999999999986979518888
Q gi|254780689|r 284 IETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMAR---------RSIVQEAISLLKTNKIELSNPI 344 (345)
Q Consensus 284 ~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq---------~~I~~~~r~L~~~G~I~l~~~~ 344 (345)
..+.+.|+.-+.+|.. ..++-+|||..|- ..+=..+++|+.+|+|++.-++
T Consensus 5 ~~ie~~Il~ll~~R~~----------~~ticPsevARal~~~~WR~lm~~vR~aA~~L~~~G~i~ItqkG 64 (83)
T pfam11625 5 AEIEAAILRLLAARGP----------GKSICPSEVARALAPDDWRPLMPPVRRAARRLAEAGEVEITQKG 64 (83)
T ss_pred HHHHHHHHHHHHHCCC----------CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999996599----------89809899998868472798869999999999878968997799
No 52
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589; InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown..
Probab=22.29 E-value=51 Score=13.21 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHCCCH-HHHHHHHHHHHCCCCCCCCHHHHHHCCCHHH
Q ss_conf 7611497-9999997544113445675678974199899
Q gi|254780689|r 98 LEEGLEQ-NELEKLLNKSDISQENNNSIWDHLKETDPGV 135 (345)
Q Consensus 98 L~~al~~-d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~ 135 (345)
|..-++. +-++.|.++..+.+.-...+|..|.+-+++=
T Consensus 12 l~~YMS~eE~~~~l~~~~~i~~~~T~~vW~~L~keN~dF 50 (57)
T TIGR01589 12 LQLYMSKEETVEFLLENAKISPKFTKLVWKKLEKENADF 50 (57)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHH
T ss_conf 731488899999998752689453327889998846888
No 53
>pfam08006 DUF1700 Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and two putative membrane proteins.
Probab=21.45 E-value=53 Score=13.09 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=32.0
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 86138999899999999999998510456653488999976114979999997544
Q gi|254780689|r 59 AKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKS 114 (345)
Q Consensus 59 m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~ 114 (345)
-..|+.+|+++.++++++|.+.+..+..--.+.+++-+ +=.-|.+-|+++....
T Consensus 11 ~~~L~~lp~~e~~~il~~y~e~f~~~~~~G~se~ei~~--~LG~P~~iA~ei~a~~ 64 (181)
T pfam08006 11 ESSLKKLPEEERKDILYDYEEHFYEGEEEGKSEEEIIK--ELGNPKTIAKELKADY 64 (181)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH--HHCCHHHHHHHHHHHH
T ss_conf 99886599999999999999999987668999999998--8299999999999874
No 54
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=21.10 E-value=54 Score=13.05 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 8309888999985388989999999610089999999998
Q gi|254780689|r 267 FNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENI 306 (345)
Q Consensus 267 l~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel 306 (345)
+.+.+.+.++-.|.-....++.++. |+...|++-|
T Consensus 143 ~eg~s~~EIA~~l~is~~tVk~~l~-----rA~~~Lr~~L 177 (179)
T PRK12514 143 LEGLSYKELAERHDVPLNTMRTWLR-----RSLLKLRECL 177 (179)
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHH-----HHHHHHHHHH
T ss_conf 0699899999988909999999999-----9999999985
No 55
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component; InterPro: IPR011296 This entry represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system . Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr) . The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes described by the IIB component and the IIC component (IPR004719 from INTERPRO), respectively. In Escherichia coli, Bacillus subtilis and Pseudomonas fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems , or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters , , .; GO: 0015574 trehalose transmembrane transporter activity, 0015771 trehalose transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.05 E-value=54 Score=13.04 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHCCC-------CCHHHHHHH---------------------HHHHHHHHHHCCCCC
Q ss_conf 46899985199-9999999999861389-------998999999---------------------999999985104566
Q gi|254780689|r 38 QVSGKLLRHFT-HAELKEIVASAKLLPE-------ISPEELEDI---------------------IDEFESQFIAGIGLT 88 (345)
Q Consensus 38 e~Aa~ilk~l~-~~Ei~~i~~~m~~l~~-------i~~~~~~~v---------------------l~EF~~~~~~~~~~~ 88 (345)
+.|.+++.+.. .+=|+..++|++||+- ++++.++++ +++||+++.+.+++.
T Consensus 2 ~da~~l~e~iGG~eNi~~atHCvTRLRfvL~D~~~v~~~~l~~~~~VKG~F~~~GQFQVvIGpg~V~~~Y~~l~~~tG~~ 81 (489)
T TIGR01992 2 KDAKALLEAIGGKENIEAATHCVTRLRFVLKDPSKVDVEALEQIDLVKGSFTTAGQFQVVIGPGDVEKVYAELIKETGIA 81 (489)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 14789998527820166875688888886168133785676368822441424852799863798799999999741711
Q ss_pred CCHH-HHHHH
Q ss_conf 5348-89999
Q gi|254780689|r 89 ENSK-NIESI 97 (345)
Q Consensus 89 g~~~-~~~~l 97 (345)
+.++ .+++-
T Consensus 82 ~~~K~~vK~a 91 (489)
T TIGR01992 82 EVTKEEVKKA 91 (489)
T ss_pred CCCHHHHHHH
T ss_conf 3678999998
No 56
>KOG0467 consensus
Probab=21.02 E-value=54 Score=13.04 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHHHC----CCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 889999853----88989999999610089999999998500
Q gi|254780689|r 272 LEVLGKALH----GTSIETQNAILHCLSNRQRKIIEENIVLN 309 (345)
Q Consensus 272 ~~~l~~ALk----ga~~e~~e~il~nmS~Ra~~~l~eel~~~ 309 (345)
...|+.|+- .++.++--++|..+|+|..+.|.|||...
T Consensus 745 ~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~Eg 786 (887)
T KOG0467 745 SPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEG 786 (887)
T ss_pred CHHHHHHHEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 877766656434532387755678544220132101566378
No 57
>pfam01984 dsDNA_bind Double-stranded DNA-binding domain. This domain is believed to bind double-stranded DNA of 20 bases length.
Probab=20.10 E-value=57 Score=12.91 Aligned_cols=50 Identities=8% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 99840489998999999999999722344212363789999950177577
Q gi|254780689|r 177 KRTVNLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQ 226 (345)
Q Consensus 177 ~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G~~~vA~Iln~l~~~~ 226 (345)
.|++++.-|-|+....||..|......+.-...-.-..+..||+.+....
T Consensus 47 eRL~ri~lvkPe~A~~VE~~Liqlaq~G~l~~kise~~L~~iL~~is~~~ 96 (105)
T pfam01984 47 ERLNRIRLVKPERAEAVENQLIQLAQSGRIRGKITEEQLKEILEQIAPQK 96 (105)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99980220388889999999999998599889849999999999974510
Done!