HHsearch alignment of GI: 254780689 and MMDB domain: 1qc7_A_

>1qc7_A (A:) Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima}
Probab=99.93  E-value=9.9e-26  Score=189.38  Aligned_cols=96  Identities=20%  Similarity=0.383  Sum_probs=93.5

Q ss_pred             CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r  249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE  328 (345)
Q Consensus       249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~  328 (345)
                      ||+|+||.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus         1 mF~F~dl~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~-g~V~~~dve~Aq~~Iv~~   79 (101)
T 1qc7_A            1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI   79 (101)
T ss_dssp             CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf             9563566548988999999968998999998689999999999866899999999999863-998899999999999999


Q ss_pred             HHHHHHCCCEECCCCCC
Q ss_conf             99999869795188889
Q gi|254780689|r  329 AISLLKTNKIELSNPIK  345 (345)
Q Consensus       329 ~r~L~~~G~I~l~~~~~  345 (345)
                      +|+|+++|+|+|....+
T Consensus        80 ~r~L~~~G~I~l~~~~e   96 (101)
T 1qc7_A           80 IRRLEEAGEIVIARGGG   96 (101)
T ss_dssp             HHHHHHTTCCCBCTTCC
T ss_pred             HHHHHHCCCEEECCCCC
T ss_conf             99999889988526997