HHsearch alignment of GI: 254780689 and MMDB domain: 1qc7_A_
>1qc7_A (A:) Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima}
Probab=99.93 E-value=9.9e-26 Score=189.38 Aligned_cols=96 Identities=20% Similarity=0.383 Sum_probs=93.5
Q ss_pred CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE 328 (345)
Q Consensus 249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~ 328 (345)
||+|+||.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus 1 mF~F~dl~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~-g~V~~~dve~Aq~~Iv~~ 79 (101)
T 1qc7_A 1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI 79 (101)
T ss_dssp CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 9563566548988999999968998999998689999999999866899999999999863-998899999999999999
Q ss_pred HHHHHHCCCEECCCCCC
Q ss_conf 99999869795188889
Q gi|254780689|r 329 AISLLKTNKIELSNPIK 345 (345)
Q Consensus 329 ~r~L~~~G~I~l~~~~~ 345 (345)
+|+|+++|+|+|....+
T Consensus 80 ~r~L~~~G~I~l~~~~e 96 (101)
T 1qc7_A 80 IRRLEEAGEIVIARGGG 96 (101)
T ss_dssp HHHHHHTTCCCBCTTCC
T ss_pred HHHHHHCCCEEECCCCC
T ss_conf 99999889988526997