HHsearch results for GI: 254780689 and protein with PDBid: 3hjl_A
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=100.00 E-value=0 Score=602.02 Aligned_cols=321 Identities=22% Similarity=0.379 Sum_probs=303.8
Q ss_pred HHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 22368687999999983814689998519999999999998613899989999999999999851045665348899997
Q gi|254780689|r 19 PVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESIL 98 (345)
Q Consensus 19 p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL 98 (345)
+..|||+||||+||++||++.|++||+||+++||++|+.+|++++.|++++++.|++||++.+..+++..+++..+.++|
T Consensus 6 ~~~Lsg~qKAAilLl~LGee~Aa~vlk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~eF~~~~~~~~~~~~~~~~~~~~L 85 (329)
T 3hjl_A 6 KSALSKAQKAAVLLLSLPEEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENI 85 (329)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 23138898999999997927799998679999999999999714899999999999999999998763125789999999
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 61149799999975441134456756789741998999999840386478899995788899999983798999999999
Q gi|254780689|r 99 EEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKR 178 (345)
Q Consensus 99 ~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~R 178 (345)
++++|+++++.+++.+. .....++|++|+|++|++|++||++|||||||+|||||+|++||+||..||+++|.+|++|
T Consensus 86 ~~~l~~~~a~~il~~i~--~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~R 163 (329)
T 3hjl_A 86 KKVIPPTLAEKFRGILE--LGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKR 163 (329)
T ss_dssp HHHSCCCHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHH--CCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98608778999999873--4563457899874998999999874781599999993899999999986999889999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 8404899989999999999997223---4421236378999995017757799999999986599999999741578998
Q gi|254780689|r 179 TVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDL 255 (345)
Q Consensus 179 ia~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl 255 (345)
||+++.++|+++++|+++|.+++.. ......||++.+|+|||+++++.++++|+.|+++||+++++||++||+||||
T Consensus 164 ia~l~~v~~~~v~~le~~L~~~l~~~~~~~~~~~~G~~~~A~ILn~~~~~~~~~il~~l~~~d~~la~~Ir~~mF~Fedl 243 (329)
T 3hjl_A 164 IATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDI 243 (329)
T ss_dssp HHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGG
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHH
T ss_conf 97447999999999999999887301210011244089999998537778899999999862899999999862388878
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 50997899999830988899998538898999999961008999999999850058999899999999999999999986
Q gi|254780689|r 256 ITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKT 335 (345)
Q Consensus 256 ~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~ 335 (345)
.+++++++|++|++|+.++|++||||++++++++||+|||+|+++|+++||+.+ |||+.+||++||++|++++|+|+++
T Consensus 244 ~~l~~~~l~~ll~~v~~~~l~~ALkga~~e~~~~il~nms~R~a~~l~~el~~~-gpv~~~~ve~Aq~~i~~~~r~L~~~ 322 (329)
T 3hjl_A 244 RKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEAL-GPVKKSEIEKAQRQVVNIIRKMIDE 322 (329)
T ss_dssp GGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHT-CSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 427988999998729988999987679999999999875799999999999854-9988999999999999999999988
Q ss_pred CCEECCC
Q ss_conf 9795188
Q gi|254780689|r 336 NKIELSN 342 (345)
Q Consensus 336 G~I~l~~ 342 (345)
|+|+|++
T Consensus 323 G~I~l~~ 329 (329)
T 3hjl_A 323 GKIEIGD 329 (329)
T ss_dssp SSCC---
T ss_pred CCEECCC
T ss_conf 8965089