HHsearch results for GI: 254780689 and protein with PDBid: 3hjl_A

>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=100.00  E-value=0  Score=602.02  Aligned_cols=321  Identities=22%  Similarity=0.379  Sum_probs=303.8

Q ss_pred             HHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             22368687999999983814689998519999999999998613899989999999999999851045665348899997
Q gi|254780689|r   19 PVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESIL   98 (345)
Q Consensus        19 p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL   98 (345)
                      +..|||+||||+||++||++.|++||+||+++||++|+.+|++++.|++++++.|++||++.+..+++..+++..+.++|
T Consensus         6 ~~~Lsg~qKAAilLl~LGee~Aa~vlk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~eF~~~~~~~~~~~~~~~~~~~~L   85 (329)
T 3hjl_A            6 KSALSKAQKAAVLLLSLPEEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENI   85 (329)
T ss_dssp             CHHHHHHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             23138898999999997927799998679999999999999714899999999999999999998763125789999999


Q ss_pred             HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             61149799999975441134456756789741998999999840386478899995788899999983798999999999
Q gi|254780689|r   99 EEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKR  178 (345)
Q Consensus        99 ~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~R  178 (345)
                      ++++|+++++.+++.+.  .....++|++|+|++|++|++||++|||||||+|||||+|++||+||..||+++|.+|++|
T Consensus        86 ~~~l~~~~a~~il~~i~--~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~R  163 (329)
T 3hjl_A           86 KKVIPPTLAEKFRGILE--LGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKR  163 (329)
T ss_dssp             HHHSCCCHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHH--CCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             98608778999999873--4563457899874998999999874781599999993899999999986999889999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             8404899989999999999997223---4421236378999995017757799999999986599999999741578998
Q gi|254780689|r  179 TVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDL  255 (345)
Q Consensus       179 ia~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl  255 (345)
                      ||+++.++|+++++|+++|.+++..   ......||++.+|+|||+++++.++++|+.|+++||+++++||++||+||||
T Consensus       164 ia~l~~v~~~~v~~le~~L~~~l~~~~~~~~~~~~G~~~~A~ILn~~~~~~~~~il~~l~~~d~~la~~Ir~~mF~Fedl  243 (329)
T 3hjl_A          164 IATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDI  243 (329)
T ss_dssp             HHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGG
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHH
T ss_conf             97447999999999999999887301210011244089999998537778899999999862899999999862388878


Q ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             50997899999830988899998538898999999961008999999999850058999899999999999999999986
Q gi|254780689|r  256 ITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKT  335 (345)
Q Consensus       256 ~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~  335 (345)
                      .+++++++|++|++|+.++|++||||++++++++||+|||+|+++|+++||+.+ |||+.+||++||++|++++|+|+++
T Consensus       244 ~~l~~~~l~~ll~~v~~~~l~~ALkga~~e~~~~il~nms~R~a~~l~~el~~~-gpv~~~~ve~Aq~~i~~~~r~L~~~  322 (329)
T 3hjl_A          244 RKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEAL-GPVKKSEIEKAQRQVVNIIRKMIDE  322 (329)
T ss_dssp             GGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHT-CSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             427988999998729988999987679999999999875799999999999854-9988999999999999999999988


Q ss_pred             CCEECCC
Q ss_conf             9795188
Q gi|254780689|r  336 NKIELSN  342 (345)
Q Consensus       336 G~I~l~~  342 (345)
                      |+|+|++
T Consensus       323 G~I~l~~  329 (329)
T 3hjl_A          323 GKIEIGD  329 (329)
T ss_dssp             SSCC---
T ss_pred             CCEECCC
T ss_conf             8965089