HHsearch results for GI: 254780689 and protein with PDBid: 3hjl_A

>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=99.10  E-value=1.4e-07  Score=68.34  Aligned_cols=183  Identities=12%  Similarity=0.127  Sum_probs=137.7

Q ss_pred             HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHH-
Q ss_conf             4037922368------68799999998381468999851999999999999861389998999999---9999999851-
Q gi|254780689|r   14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDI---IDEFESQFIA-   83 (345)
Q Consensus        14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~v---l~EF~~~~~~-   83 (345)
                      .+.+.|..|.      .||=+|++|..|.++.|++||.+|+++....|...|++++.++|+.+..+   |.+-...... 
T Consensus       113 L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~~~v~~le~~L~~~l~~~~~~  192 (329)
T 3hjl_A          113 IEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAK  192 (329)
T ss_dssp             HHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             87499899999987478159999999389999999998699988999999997447999999999999999887301210


Q ss_pred             CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             04566534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r   84 GIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP  156 (345)
Q Consensus        84 ~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~  156 (345)
                      ...-.||.+.+.++|+.. +.+.-+.+++.++-..+..       --.|+-|..+++..+..+++.=+++++++-|...+
T Consensus       193 ~~~~~~G~~~~A~ILn~~-~~~~~~~il~~l~~~d~~la~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~l~~ALkga~  271 (329)
T 3hjl_A          193 EALKLEGTAVAAELLNTL-DKETRELILQSIGQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGAP  271 (329)
T ss_dssp             HSCCCCHHHHHHHHHHHS-CHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             011244089999998537-7788999999998628999999998623888784279889999987299889999876799


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             88999999837989999999998404899989999999999
Q gi|254780689|r  157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCI  197 (345)
Q Consensus       157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L  197 (345)
                      ++..-.+|..+|...+.-+--.|..+++++..-++.--+.+
T Consensus       272 ~e~~~~il~nms~R~a~~l~~el~~~gpv~~~~ve~Aq~~i  312 (329)
T 3hjl_A          272 EDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQV  312 (329)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999999875799999999999854998899999999999