Query gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 345
No_of_seqs 124 out of 735
Neff 6.8
Searched_HMMs 23785
Date Tue May 31 16:29:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780689.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hjl_A Flagellar motor switch 100.0 0 0 602.0 33.9 321 19-342 6-329 (329)
2 1lkv_X Flagellar motor switch 100.0 1.7E-44 0 312.5 21.1 221 123-344 3-226 (232)
3 1qc7_A Protein (FLIG); flagell 99.9 7.4E-26 3.1E-30 189.2 11.3 95 249-344 1-95 (101)
4 3hjl_A Flagellar motor switch 99.1 1.4E-07 5.9E-12 68.3 22.1 183 14-197 113-312 (329)
5 1lkv_X Flagellar motor switch 98.5 1.3E-05 5.3E-10 55.5 15.6 166 25-191 25-201 (232)
6 2zy9_A Mg2+ transporter MGTE; 98.0 2.1E-05 9E-10 53.9 7.3 70 125-197 81-150 (473)
7 2yvy_A MGTE, Mg2+ transporter 97.8 0.00035 1.5E-08 45.9 11.7 41 129-169 65-105 (278)
8 2oux_A Magnesium transporter; 97.7 0.0005 2.1E-08 44.9 10.1 83 95-180 51-133 (286)
9 2yvy_A MGTE, Mg2+ transporter 97.5 0.0027 1.1E-07 40.1 11.7 95 127-240 15-109 (278)
10 2zy9_A Mg2+ transporter MGTE; 97.3 0.00067 2.8E-08 44.1 6.7 90 129-237 37-126 (473)
11 2oux_A Magnesium transporter; 96.8 0.021 8.7E-07 34.2 10.6 40 136-175 77-116 (286)
12 2gtq_A Aminopeptidase N; alani 93.6 0.37 1.6E-05 25.9 13.5 12 234-245 812-823 (867)
13 1qc7_A Protein (FLIG); flagell 93.6 0.37 1.6E-05 25.9 9.0 71 124-194 3-73 (101)
14 3kxr_A Magnesium transporter, 79.5 1.5 6.4E-05 21.9 3.6 41 135-175 5-45 (205)
15 3b34_A Aminopeptidase N; prote 78.8 3 0.00013 19.9 8.1 14 232-245 834-847 (891)
16 3ebh_A PFA-M1, M1 family amino 77.5 3.3 0.00014 19.6 11.9 17 278-294 832-848 (889)
17 2kn6_A Apoptosis-associated sp 74.9 3.9 0.00016 19.2 8.6 55 95-150 29-86 (215)
18 2w9y_A CE-FAR-7, fatty acid/re 58.3 8.2 0.00034 17.0 5.5 38 225-262 46-84 (140)
19 3ka1_A RBCX protein; chaperone 49.9 11 0.00047 16.2 5.9 24 221-244 17-40 (126)
20 2i9c_A Hypothetical protein RP 48.7 7.5 0.00031 17.3 2.0 92 64-183 5-100 (123)
21 2py8_A Hypothetical protein RB 39.1 16 0.00068 15.1 5.2 30 81-112 44-73 (147)
22 3c5y_A Ribose/galactose isomer 37.1 17 0.00073 14.9 4.7 15 189-203 142-156 (231)
23 1x2i_A HEF helicase/nuclease; 32.0 21 0.00088 14.3 3.7 43 35-77 22-66 (75)
24 3hyb_A RBCX protein; rubisco, 31.6 21 0.00089 14.3 5.2 30 218-247 34-63 (155)
25 1cuk_A RUVA protein; DNA repai 30.3 22 0.00094 14.2 6.7 49 34-82 80-133 (203)
26 2ns0_A Hypothetical protein; r 26.1 26 0.0011 13.7 2.8 51 284-344 6-65 (85)
27 1z00_A DNA excision repair pro 24.7 28 0.0012 13.5 3.2 30 48-77 10-39 (89)
28 1uvj_A P2 protein; polymerase/ 23.8 29 0.0012 13.4 2.0 49 247-295 603-662 (664)
29 1ev7_A Type IIE restriction en 23.2 9.5 0.0004 16.6 -0.9 61 279-342 174-251 (317)
30 1kft_A UVRC, excinuclease ABC 23.1 30 0.0013 13.3 3.7 42 34-77 31-76 (78)
31 1ixr_A Holliday junction DNA h 22.9 30 0.0013 13.3 5.6 44 35-78 80-128 (191)
32 3bpj_A Eukaryotic translation 22.6 27 0.0012 13.6 1.4 27 34-60 38-64 (80)
33 3a5i_A Flagellar biosynthesis 22.5 31 0.0013 13.2 3.6 21 282-302 317-337 (389)
34 2kvc_A Putative uncharacterize 21.7 26 0.0011 13.7 1.1 28 46-73 38-65 (103)
No 1
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=100.00 E-value=0 Score=602.02 Aligned_cols=321 Identities=22% Similarity=0.379 Sum_probs=303.8
Q ss_pred HHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 22368687999999983814689998519999999999998613899989999999999999851045665348899997
Q gi|254780689|r 19 PVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESIL 98 (345)
Q Consensus 19 p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL 98 (345)
+..|||+||||+||++||++.|++||+||+++||++|+.+|++++.|++++++.|++||++.+..+++..+++..+.++|
T Consensus 6 ~~~Lsg~qKAAilLl~LGee~Aa~vlk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~eF~~~~~~~~~~~~~~~~~~~~L 85 (329)
T 3hjl_A 6 KSALSKAQKAAVLLLSLPEEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENI 85 (329)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 23138898999999997927799998679999999999999714899999999999999999998763125789999999
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 61149799999975441134456756789741998999999840386478899995788899999983798999999999
Q gi|254780689|r 99 EEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKR 178 (345)
Q Consensus 99 ~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~R 178 (345)
++++|+++++.+++.+. .....++|++|+|++|++|++||++|||||||+|||||+|++||+||..||+++|.+|++|
T Consensus 86 ~~~l~~~~a~~il~~i~--~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~R 163 (329)
T 3hjl_A 86 KKVIPPTLAEKFRGILE--LGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKR 163 (329)
T ss_dssp HHHSCCCHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHH--CCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98608778999999873--4563457899874998999999874781599999993899999999986999889999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 8404899989999999999997223---4421236378999995017757799999999986599999999741578998
Q gi|254780689|r 179 TVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDL 255 (345)
Q Consensus 179 ia~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl 255 (345)
||+++.++|+++++|+++|.+++.. ......||++.+|+|||+++++.++++|+.|+++||+++++||++||+||||
T Consensus 164 ia~l~~v~~~~v~~le~~L~~~l~~~~~~~~~~~~G~~~~A~ILn~~~~~~~~~il~~l~~~d~~la~~Ir~~mF~Fedl 243 (329)
T 3hjl_A 164 IATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDI 243 (329)
T ss_dssp HHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGG
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHH
T ss_conf 97447999999999999999887301210011244089999998537778899999999862899999999862388878
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 50997899999830988899998538898999999961008999999999850058999899999999999999999986
Q gi|254780689|r 256 ITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKT 335 (345)
Q Consensus 256 ~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~ 335 (345)
.+++++++|++|++|+.++|++||||++++++++||+|||+|+++|+++||+.+ |||+.+||++||++|++++|+|+++
T Consensus 244 ~~l~~~~l~~ll~~v~~~~l~~ALkga~~e~~~~il~nms~R~a~~l~~el~~~-gpv~~~~ve~Aq~~i~~~~r~L~~~ 322 (329)
T 3hjl_A 244 RKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEAL-GPVKKSEIEKAQRQVVNIIRKMIDE 322 (329)
T ss_dssp GGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHT-CSCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 427988999998729988999987679999999999875799999999999854-9988999999999999999999988
Q ss_pred CCEECCC
Q ss_conf 9795188
Q gi|254780689|r 336 NKIELSN 342 (345)
Q Consensus 336 G~I~l~~ 342 (345)
|+|+|++
T Consensus 323 G~I~l~~ 329 (329)
T 3hjl_A 323 GKIEIGD 329 (329)
T ss_dssp SSCC---
T ss_pred CCEECCC
T ss_conf 8965089
No 2
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=100.00 E-value=1.7e-44 Score=312.54 Aligned_cols=221 Identities=24% Similarity=0.456 Sum_probs=211.6
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 56789741998999999840386478899995788899999983798999999999840489998999999999999722
Q gi|254780689|r 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLP 202 (345)
Q Consensus 123 ~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~ 202 (345)
.||++|+|++|++|+.||++||||++|+||+||+|+.||+||..||++.|.+|+.||+.++.++++++..+++.+...+.
T Consensus 3 ~pfd~L~~l~p~~l~~~L~~e~pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~a~~l~ 82 (232)
T 1lkv_X 3 KPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKIS 82 (232)
T ss_dssp ---------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 74899861999999999981899999999972998999999997999999999998541234689999988999999872
Q ss_pred CCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 344---21236378999995017757799999999986599999999741578998509978999998309888999985
Q gi|254780689|r 203 QSN---SNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKAL 279 (345)
Q Consensus 203 ~~~---~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~AL 279 (345)
... ....+|++.++++||++++..+..++.+++..||+++..|+++||+|+||.+++...++++++++..++++.|+
T Consensus 83 ~~~~~~~~~~~gv~~a~~~l~~~~~~~~~~~~~~l~~~d~~~~~~i~~~l~~f~~l~~l~~~~~~~~l~~i~~~~l~~al 162 (232)
T 1lkv_X 83 GFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALAL 162 (232)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 56532222257899999999853311145666767504778777899873007887650221054554423654410126
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
Q ss_conf 38898999999961008999999999850058999899999999999999999986979518888
Q gi|254780689|r 280 HGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPI 344 (345)
Q Consensus 280 kga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~~~~ 344 (345)
+|++.+.+.+||+|||.|++.++.+++..+ |+++.+||++||++|++.+|+++++|.|.|....
T Consensus 163 ~~~~~e~~~~~l~~~~~r~~~vv~~e~~~~-G~it~~DV~~a~~~Iv~~i~~~~~~g~i~l~~~~ 226 (232)
T 1lkv_X 163 KGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIARGG 226 (232)
T ss_dssp TTCCHHHHHHHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHHTTSSCCCC--
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 999999999999968798999999887636-9971999999999999999999878998845799
No 3
>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} SCOP: a.118.14.1
Probab=99.93 E-value=7.4e-26 Score=189.21 Aligned_cols=95 Identities=20% Similarity=0.391 Sum_probs=92.5
Q ss_pred CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE 328 (345)
Q Consensus 249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~ 328 (345)
|||||||.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus 1 mFtFedl~~l~~~~l~~ll~~i~~~~l~~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~ 79 (101)
T 1qc7_A 1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI 79 (101)
T ss_dssp CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 9564566548988999999968998999998689999999999866899999999999863-998899999999999999
Q ss_pred HHHHHHCCCEECCCCC
Q ss_conf 9999986979518888
Q gi|254780689|r 329 AISLLKTNKIELSNPI 344 (345)
Q Consensus 329 ~r~L~~~G~I~l~~~~ 344 (345)
+|+|+++|+|+|..+.
T Consensus 80 ~r~L~~~G~I~L~~~~ 95 (101)
T 1qc7_A 80 IRRLEEAGEIVIARGG 95 (101)
T ss_dssp HHHHHHTTCCCBCTTC
T ss_pred HHHHHHCCCEEECCCC
T ss_conf 9999988998853799
No 4
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=99.10 E-value=1.4e-07 Score=68.34 Aligned_cols=183 Identities=12% Similarity=0.127 Sum_probs=137.7
Q ss_pred HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHH-
Q ss_conf 4037922368------68799999998381468999851999999999999861389998999999---9999999851-
Q gi|254780689|r 14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDI---IDEFESQFIA- 83 (345)
Q Consensus 14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~v---l~EF~~~~~~- 83 (345)
.+.+.|..|. .||=+|++|..|.++.|++||.+|+++....|...|++++.++|+.+..+ |.+-......
T Consensus 113 L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~~~v~~le~~L~~~l~~~~~~ 192 (329)
T 3hjl_A 113 IEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAK 192 (329)
T ss_dssp HHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87499899999987478159999999389999999998699988999999997447999999999999999887301210
Q ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 04566534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r 84 GIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP 156 (345)
Q Consensus 84 ~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~ 156 (345)
...-.||.+.+.++|+.. +.+.-+.+++.++-..+.. --.|+-|..+++..+..+++.=+++++++-|...+
T Consensus 193 ~~~~~~G~~~~A~ILn~~-~~~~~~~il~~l~~~d~~la~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~l~~ALkga~ 271 (329)
T 3hjl_A 193 EALKLEGTAVAAELLNTL-DKETRELILQSIGQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGAP 271 (329)
T ss_dssp HSCCCCHHHHHHHHHHHS-CHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 011244089999998537-7788999999998628999999998623888784279889999987299889999876799
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88999999837989999999998404899989999999999
Q gi|254780689|r 157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCI 197 (345)
Q Consensus 157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L 197 (345)
++..-.+|..+|...+.-+--.|..+++++..-++.--+.+
T Consensus 272 ~e~~~~il~nms~R~a~~l~~el~~~gpv~~~~ve~Aq~~i 312 (329)
T 3hjl_A 272 EDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQV 312 (329)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999875799999999999854998899999999999
No 5
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=98.50 E-value=1.3e-05 Score=55.46 Aligned_cols=166 Identities=12% Similarity=0.148 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHH
Q ss_conf 8799999998381468999851999999999999861389998999999999999985104----566534889999761
Q gi|254780689|r 25 KDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGI----GLTENSKNIESILEE 100 (345)
Q Consensus 25 ~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~----~~~g~~~~~~~lL~~ 100 (345)
+|-+|++|.-|.++.|+.||..|+++....|...|+.++.++++.+..+-+.....+.... .-.+|...+.++|.+
T Consensus 25 pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~a~~l~~~~~~~~~~~~gv~~a~~~l~~ 104 (232)
T 1lkv_X 25 PQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNN 104 (232)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999729989999999979999999999985412346899999889999998725653222225789999999985
Q ss_pred CCCHHHHHHHHHHHHCCCC-------CCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf 1497999999754411344-------567567897419989999998403864788999957888999999837989999
Q gi|254780689|r 101 GLEQNELEKLLNKSDISQE-------NNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHA 173 (345)
Q Consensus 101 al~~d~a~~ll~~~~~~~~-------~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ 173 (345)
.-+. ....++..+....+ ..--.|..|..+....+..++++-++++++.++...+.+..+.++..+|...+.
T Consensus 105 ~~~~-~~~~~~~~l~~~d~~~~~~i~~~l~~f~~l~~l~~~~~~~~l~~i~~~~l~~al~~~~~e~~~~~l~~~~~r~~~ 183 (232)
T 1lkv_X 105 LDRT-TEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAA 183 (232)
T ss_dssp SCHH-HHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHH
T ss_pred CCCC-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHH
T ss_conf 3311-145666767504778777899873007887650221054554423654410126999999999999968798999
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999998404899989999
Q gi|254780689|r 174 DIMKRTVNLPKISPYIQK 191 (345)
Q Consensus 174 ev~~Ria~l~~v~~ev~~ 191 (345)
-|-..+..++.+..+-+.
T Consensus 184 vv~~e~~~~G~it~~DV~ 201 (232)
T 1lkv_X 184 LLKDELEYMGPVRLKDVE 201 (232)
T ss_dssp HHHHHHHSCCCCCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHH
T ss_conf 999887636997199999
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=97.97 E-value=2.1e-05 Score=53.93 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7897419989999998403864788999957888999999837989999999998404899989999999999
Q gi|254780689|r 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCI 197 (345)
Q Consensus 125 ~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L 197 (345)
++-|..++++.-..++++-.|..++-++++|+++.++++|..||++.+. +..+ -+...+++-.+.+.+.|
T Consensus 81 aevl~el~~~~~~~ll~~l~~~~~~~ll~~l~~DD~adlL~~Lp~e~~~-~~~~--iL~~L~~~~r~~i~~lL 150 (473)
T 2zy9_A 81 AEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPA-YFQR--LKDLLDPRTRAEVEALA 150 (473)
T ss_dssp HHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHSCHH-HHHH--HTTSSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH-HHHH--HHHCCCHHHHHHHHHHH
T ss_conf 8999829999999999959999999999829966899999855153399-9999--98629999999999985
No 7
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
Probab=97.84 E-value=0.00035 Score=45.89 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=14.9
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCH
Q ss_conf 41998999999840386478899995788899999983798
Q gi|254780689|r 129 KETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPN 169 (345)
Q Consensus 129 ~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~ 169 (345)
..++|+.-..+|+.-++.-++-++.+|+|+.++.+|..||+
T Consensus 65 ~~l~~~~~~~il~~l~~~~~~~ll~~l~~Dd~~dll~~L~~ 105 (278)
T 2yvy_A 65 SHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRK 105 (278)
T ss_dssp HTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 92789899999952999999999986581369999997056
No 8
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1
Probab=97.65 E-value=0.0005 Score=44.86 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=63.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
Q ss_conf 99976114979999997544113445675678974199899999984038647889999578889999998379899999
Q gi|254780689|r 95 ESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHAD 174 (345)
Q Consensus 95 ~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~e 174 (345)
+..+...++.+.+..++..++ ......++.|+.++++.++.++..=.|.-++-+|..|+++.+.+||..||++.|..
T Consensus 51 r~~l~~~L~~~~~~~vl~~l~---~d~~~~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l~~~~~~~iL~~L~~~~r~~ 127 (286)
T 2oux_A 51 RQHLYNYLSPKELADMFDVIE---EDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGE 127 (286)
T ss_dssp HHHHHHHSCHHHHHHHHTTSC---TTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
T ss_conf 999999589878778998825---89999999999589999999998589567899998689999999997168999999
Q ss_pred HHHHHH
Q ss_conf 999984
Q gi|254780689|r 175 IMKRTV 180 (345)
Q Consensus 175 v~~Ria 180 (345)
+-..+.
T Consensus 128 i~~ll~ 133 (286)
T 2oux_A 128 IKELLH 133 (286)
T ss_dssp HHHHTT
T ss_pred HHHHCC
T ss_conf 999737
No 9
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
Probab=97.47 E-value=0.0027 Score=40.08 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 97419989999998403864788999957888999999837989999999998404899989999999999997223442
Q gi|254780689|r 127 HLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNS 206 (345)
Q Consensus 127 ~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~ 206 (345)
.|..-+-..+..+|..-||.-+|-+|..|+++....++..||.+.+++|+. .++|+....+=+.|
T Consensus 15 ~l~~~~~~~l~~~l~~~~padiA~~l~~L~~~~~~~~~~~L~~~~~aevl~------~l~~~~~~~il~~l--------- 79 (278)
T 2yvy_A 15 ALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLS------HLSPEEQAEYLKTL--------- 79 (278)
T ss_dssp HHHHTCHHHHHHHHHHCCHHHHHHGGGGSCHHHHHHHHHHSCHHHHHHHHH------TSCHHHHHHHHHHS---------
T ss_pred HHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH------HCCHHHHHHHHHCC---------
T ss_conf 998788999999998099999999998099999999999699878999999------27898999999529---------
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1236378999995017757799999999986599
Q gi|254780689|r 207 NTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE 240 (345)
Q Consensus 207 ~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~ 240 (345)
..+.++.++++|+.+....+|+.|...++.
T Consensus 80 ----~~~~~~~ll~~l~~Dd~~dll~~L~~~~~~ 109 (278)
T 2yvy_A 80 ----PPWRLREILEELSLDDLADALQAVRKEDPA 109 (278)
T ss_dssp ----CHHHHHHHHHHSCHHHHHHHHHHHHHHCHH
T ss_pred ----CHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf ----999999999865813699999970566689
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=97.27 E-value=0.00067 Score=44.07 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=37.9
Q ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 41998999999840386478899995788899999983798999999999840489998999999999999722344212
Q gi|254780689|r 129 KETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNSNT 208 (345)
Q Consensus 129 ~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~ 208 (345)
..=+...+..+|..-||.-+|-+|..|+++....++..||.+.+.+| +..++++....+-+.|.
T Consensus 37 ~~~~~~~l~~~L~~lhpaDiA~~le~L~~~~r~~l~~~L~~~~~aev------l~el~~~~~~~ll~~l~---------- 100 (473)
T 2zy9_A 37 QEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV------LSHLSPEEQAEYLKTLP---------- 100 (473)
T ss_dssp ---------CCTTTSCHHHHHHGGGGSCHHHHHHHHHHSCHHHHHHH------TTSSCHHHHHHHHHHSC----------
T ss_pred HCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH------HHCCCHHHHHHHHHHCC----------
T ss_conf 87889999999984999999999981999999999995997568899------98299999999999599----------
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 36378999995017757799999999986
Q gi|254780689|r 209 STGPEKVANLINELEKPQVDKLLTSLQEV 237 (345)
Q Consensus 209 ~~G~~~vA~Iln~l~~~~~~~iL~~L~~~ 237 (345)
.+.++++++.|+.+...++|+.|.+.
T Consensus 101 ---~~~~~~ll~~l~~DD~adlL~~Lp~e 126 (473)
T 2zy9_A 101 ---PWRLREILEELSLDDLADALQAVRKE 126 (473)
T ss_dssp ---HHHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHCCHHHHHHHHHHCCHH
T ss_conf ---99999999829966899999855153
No 11
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1
Probab=96.76 E-value=0.021 Score=34.19 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 9999840386478899995788899999983798999999
Q gi|254780689|r 136 IADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADI 175 (345)
Q Consensus 136 La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev 175 (345)
...+|.+-+|..+|-+|.+|+++.++.+|..||++.+.++
T Consensus 77 ~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l~~~~~~~i 116 (286)
T 2oux_A 77 MKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKY 116 (286)
T ss_dssp TTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf 9999995899999999985895678999986899999999
No 12
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58}
Probab=93.57 E-value=0.37 Score=25.90 Aligned_cols=12 Identities=0% Similarity=0.230 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 998659999999
Q gi|254780689|r 234 LQEVSKEAFDKV 245 (345)
Q Consensus 234 L~~~d~~la~~I 245 (345)
|++.||..|.++
T Consensus 812 ld~~Npq~aarl 823 (867)
T 2gtq_A 812 IDRFNPQVAARL 823 (867)
T ss_dssp HHTTCHHHHHHH
T ss_pred HCCCCHHHHHHH
T ss_conf 758588999999
No 13
>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} SCOP: a.118.14.1
Probab=93.56 E-value=0.37 Score=25.89 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=62.1
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 67897419989999998403864788999957888999999837989999999998404899989999999
Q gi|254780689|r 124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIE 194 (345)
Q Consensus 124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie 194 (345)
.|+-|..+++..+..++++=.++++++-|...+++....+|..+|...+..+--.|..++++++.-++.--
T Consensus 3 tFedl~~l~~~~l~~ll~~i~~~~l~~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~g~v~~~dve~Aq 73 (101)
T 1qc7_A 3 VFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ 73 (101)
T ss_dssp CGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 64566548988999999968998999998689999999999866899999999999863998899999999
No 14
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1}
Probab=79.53 E-value=1.5 Score=21.87 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=16.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999840386478899995788899999983798999999
Q gi|254780689|r 135 VIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADI 175 (345)
Q Consensus 135 ~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev 175 (345)
.++.++..=+|.-++-+|..|+.+...++|..|+++.|..+
T Consensus 5 ~~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i 45 (205)
T 3kxr_A 5 EVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRF 45 (205)
T ss_dssp --CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHH
T ss_conf 99999983897789999986999999999982999999999
No 15
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylalanine, membrane, metal-binding, metalloprotease, zinc; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 2dq6_A 2dqm_A* 2zxg_A*
Probab=78.76 E-value=3 Score=19.87 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99998659999999
Q gi|254780689|r 232 TSLQEVSKEAFDKV 245 (345)
Q Consensus 232 ~~L~~~d~~la~~I 245 (345)
-.|++.||..|.++
T Consensus 834 ~~ld~~Npq~aarl 847 (891)
T 3b34_A 834 TDLNSRNPQVASRL 847 (891)
T ss_dssp HHHHHHCHHHHHHH
T ss_pred HHHCCCCHHHHHHH
T ss_conf 98748588999999
No 16
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A*
Probab=77.52 E-value=3.3 Score=19.63 Aligned_cols=17 Identities=0% Similarity=-0.146 Sum_probs=6.0
Q ss_pred HHCCCCHHHHHHHHHHC
Q ss_conf 85388989999999610
Q gi|254780689|r 278 ALHGTSIETQNAILHCL 294 (345)
Q Consensus 278 ALkga~~e~~e~il~nm 294 (345)
.|-..++.+.-++.+.+
T Consensus 832 ~ld~~Npq~aarl~~~~ 848 (889)
T 3ebh_A 832 KTDKFNPMVATQLCEPF 848 (889)
T ss_dssp HHHTTCHHHHHHTTGGG
T ss_pred HHCCCCHHHHHHHHHHH
T ss_conf 87384889999999999
No 17
>2kn6_A Apoptosis-associated speck-like protein containing A CARD; multidomain modular protein structure, interdomain mobility, death domain, inflammation; NMR {Homo sapiens}
Probab=74.90 E-value=3.9 Score=19.18 Aligned_cols=55 Identities=20% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHHHHHCCCHHHHH---HHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 99976114979999---997544113445675678974199899999984038647889
Q gi|254780689|r 95 ESILEEGLEQNELE---KLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAY 150 (345)
Q Consensus 95 ~~lL~~al~~d~a~---~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAl 150 (345)
...|+. |++++.+ ..+...........-||..|.+.++..|+.+|..=.|.--|+
T Consensus 29 l~~Le~-L~~~ElkkFK~~L~~~~l~~g~~~Ip~~~le~ad~~dladlLv~~y~~~~A~ 86 (215)
T 2kn6_A 29 LDALEN-LTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLETYGA 86 (215)
T ss_dssp HHHHHH-SCHHHHHHHHHHHHHSCCSSCCCCCCHHHHHHSCHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHH-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHH
T ss_conf 999984-3799999999986557533368999879886089988999999975858999
No 18
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=58.27 E-value=8.2 Score=17.02 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHCCCHHH
Q ss_conf 779999999998659999999974157899-85099789
Q gi|254780689|r 225 PQVDKLLTSLQEVSKEAFDKVRPKVFLFDD-LITLSSHD 262 (345)
Q Consensus 225 ~~~~~iL~~L~~~d~~la~~Ir~~mF~FeD-l~~l~~~~ 262 (345)
..+++++..|.+.+|.|+..+.+++-.+-. +-.|++.+
T Consensus 46 ~~e~e~i~alK~Ksp~L~~k~e~l~~~~k~Ki~~L~pea 84 (140)
T 2w9y_A 46 SQCGEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAA 84 (140)
T ss_dssp ---TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 679999999998698989999999999999988279889
No 19
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1}
Probab=49.90 E-value=11 Score=16.15 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 177577999999999865999999
Q gi|254780689|r 221 ELEKPQVDKLLTSLQEVSKEAFDK 244 (345)
Q Consensus 221 ~l~~~~~~~iL~~L~~~d~~la~~ 244 (345)
.+.-.....+|.+|.+.||..+..
T Consensus 17 yfTy~AvR~Vl~QL~e~np~~y~w 40 (126)
T 3ka1_A 17 YLTYQAVRTVIGQLAETDPPRSLW 40 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999999997428287899
No 20
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=48.69 E-value=7.5 Score=17.29 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCC---HHHHHHH
Q ss_conf 99989999999999999851045-6653488999976114979999997544113445675678974199---8999999
Q gi|254780689|r 64 EISPEELEDIIDEFESQFIAGIG-LTENSKNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETD---PGVIADF 139 (345)
Q Consensus 64 ~i~~~~~~~vl~EF~~~~~~~~~-~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~---~~~La~~ 139 (345)
+.+.-.++.++..|......+.- ...+. ..+++....+.. ..+..|...+ -+.|..+
T Consensus 5 ~l~~~~v~~Li~~F~~~si~q~eA~~~~d------------~~~~Nr~~~kl~-------~~~~eLk~~~~~~r~~Ll~L 65 (123)
T 2i9c_A 5 DLHQMTTQDLVALFAKVTVEQDDALLGNQ------------ISRFNRLFGVMA-------EIADELKARDGDQRTALLSL 65 (123)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHH-------HHHHHHHHSTTCGGGGGGGG
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHH-------HHHHHHHHCCCCCHHHHHHH
T ss_conf 07664599999999999999999998275------------799999999999-------99999984686508999999
Q ss_pred HHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 84038647889999578889999998379899999999984048
Q gi|254780689|r 140 LSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLP 183 (345)
Q Consensus 140 L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~ 183 (345)
|.+++||+-- .||.-+-++.++....|+.+|+..+
T Consensus 66 L~H~n~~VRl---------~AA~~~L~~~p~~A~~vLe~ia~~~ 100 (123)
T 2i9c_A 66 FEYPNMQVRL---------QAAKLTLAVAPVKAREQLEAIVSSK 100 (123)
T ss_dssp GGSSCHHHHH---------HHHHTTTTTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHH---------HHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 8698786899---------9999998728899999999998676
No 21
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=39.05 E-value=16 Score=15.07 Aligned_cols=30 Identities=13% Similarity=0.389 Sum_probs=14.9
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 85104566534889999761149799999975
Q gi|254780689|r 81 FIAGIGLTENSKNIESILEEGLEQNELEKLLN 112 (345)
Q Consensus 81 ~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~ 112 (345)
|.+...+..|..|++.++.. .++-|-.||.
T Consensus 44 F~~~~~~~DGd~fL~~L~~e--~~eLAlRIm~ 73 (147)
T 2py8_A 44 YLASHSIQNGETFLTELLDE--NKELVLRILA 73 (147)
T ss_dssp HHHHSCCSSHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHH--CHHHHHHHHH
T ss_conf 87348985799999999866--9999999999
No 22
>3c5y_A Ribose/galactose isomerase; YP_001165900.1, putative ribose 5-phosphate isomerase, structural genomics; HET: MSE; 1.81A {Novosphingobium aromaticivorans DSM12444}
Probab=37.13 E-value=17 Score=14.87 Aligned_cols=15 Identities=0% Similarity=0.133 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999997223
Q gi|254780689|r 189 IQKTIEKCIVEMLPQ 203 (345)
Q Consensus 189 v~~~ie~~L~~~l~~ 203 (345)
....++..+...+.+
T Consensus 142 a~~~l~~~l~t~FeG 156 (231)
T 3c5y_A 142 AELNLQDVYRKLFDG 156 (231)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999998295776
No 23
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=32.04 E-value=21 Score=14.34 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=15.9
Q ss_pred HCCHHHHHHHHHCCH-HHHH-HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 381468999851999-9999-999998613899989999999999
Q gi|254780689|r 35 MEKQVSGKLLRHFTH-AELK-EIVASAKLLPEISPEELEDIIDEF 77 (345)
Q Consensus 35 LGee~Aa~ilk~l~~-~Ei~-~i~~~m~~l~~i~~~~~~~vl~EF 77 (345)
+|+..|..+++||+. +.+. .=..++..++.|.+...+.+..-|
T Consensus 22 IG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIG~~~a~~i~~~~ 66 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 429999999999688898999789999855897999999999998
No 24
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A*
Probab=31.57 E-value=21 Score=14.29 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=13.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 950177577999999999865999999997
Q gi|254780689|r 218 LINELEKPQVDKLLTSLQEVSKEAFDKVRP 247 (345)
Q Consensus 218 Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~ 247 (345)
+.|.+.-.....+|.+|.+.||..+.-+.+
T Consensus 34 L~~yfTY~AvR~Vl~QL~etnP~~~~wL~~ 63 (155)
T 3hyb_A 34 LQSYLTYQALRTVLAQLGETNPPLALWLHN 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999999996128487999999
No 25
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=30.33 E-value=22 Score=14.16 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 83814689998519999999999-----99861389998999999999999985
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQFI 82 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~~ 82 (345)
.+||..|-.||..++++++.+.. ...++++.|.+...++++-|..+.+.
T Consensus 80 GIGPK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtA~rIilELkdK~~ 133 (203)
T 1cuk_A 80 GVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFK 133 (203)
T ss_dssp SCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 857566888861279899999987189988606998779999999999999987
No 26
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=26.10 E-value=26 Score=13.68 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHHHHHHHHHCCCEECCCCC
Q ss_conf 899999996100899999999985005899989999999---------9999999999986979518888
Q gi|254780689|r 284 IETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMAR---------RSIVQEAISLLKTNKIELSNPI 344 (345)
Q Consensus 284 ~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq---------~~I~~~~r~L~~~G~I~l~~~~ 344 (345)
..+.+.|+.-+++|. ...++-+|||..|- ..+=+.+++|+.+|+|++.-++
T Consensus 6 ~~le~~Il~Ll~~R~----------~~~ticPSEvARal~~~~WR~lM~~vR~aA~~L~~~G~i~ItqkG 65 (85)
T 2ns0_A 6 RELEECIRALLDARA----------DSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVEVTQKG 65 (85)
T ss_dssp HHHHHHHHHHHHHSC----------TTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHHHCC----------CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999999649----------989759899998868460688729999999999877968997799
No 27
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=24.70 E-value=28 Score=13.51 Aligned_cols=30 Identities=3% Similarity=0.218 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999998613899989999999999
Q gi|254780689|r 48 THAELKEIVASAKLLPEISPEELEDIIDEF 77 (345)
Q Consensus 48 ~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF 77 (345)
..+-+.++..+..+++.|.+.....++..|
T Consensus 10 ~~~~~~~~~~~L~~I~gIG~~~a~~L~~~F 39 (89)
T 1z00_A 10 EQDFVSRVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHHHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 367499999987589975999999999994
No 28
>1uvj_A P2 protein; polymerase/complex, RNA-dependent RNA polymerase, oligonucleotide, polymerase; 1.9A {Bacteriophage phi-6} SCOP: e.8.1.6 PDB: 1hht_P* 1hi0_P* 1hi1_A* 1hi8_A 1uvi_A 1hhs_A 1uvk_A* 1uvl_A 1uvm_A 1uvn_A* 2jl9_A 2jlg_A* 2jlf_A* 1wac_A
Probab=23.83 E-value=29 Score=13.40 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=43.4
Q ss_pred HHCCCHHHHHCCCHHHHHHHH-----------HCCCHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 741578998509978999998-----------3098889999853889899999996100
Q gi|254780689|r 247 PKVFLFDDLITLSSHDLSIVF-----------NNISLEVLGKALHGTSIETQNAILHCLS 295 (345)
Q Consensus 247 ~~mF~FeDl~~l~~~~l~~ll-----------~evd~~~l~~ALkga~~e~~e~il~nmS 295 (345)
.+|-.|+++..|.+-++..|. .+|+.+++-+++.|.+.++.|.||.+.-
T Consensus 603 ~~~~~~~~~~~l~~~d~~vL~DP~km~~kwt~~eI~~~V~e~v~~~l~~~~~e~~~~sv~ 662 (664)
T 1uvj_A 603 ASMARQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIHEVLMHGVSVEKTERFLRSVM 662 (664)
T ss_dssp TTSCTTCCSTTCCHHHHHHHHCGGGGTTTCCGGGSCHHHHHHHEEECCHHHHHHHHHHHS
T ss_pred HCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 503333332336712255624831532117766518789999984355999999988415
No 29
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} SCOP: c.52.1.9 PDB: 1iaw_A
Probab=23.19 E-value=9.5 Score=16.61 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=27.7
Q ss_pred HCCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHH-------HHHHCCCEECC
Q ss_conf 53889899999996100--------899999999985005899989999--99999999999-------99986979518
Q gi|254780689|r 279 LHGTSIETQNAILHCLS--------NRQRKIIEENIVLNDSSIAPREVA--MARRSIVQEAI-------SLLKTNKIELS 341 (345)
Q Consensus 279 Lkga~~e~~e~il~nmS--------~Ra~~~l~eel~~~~g~v~~~dve--~Aq~~I~~~~r-------~L~~~G~I~l~ 341 (345)
|.+.+++.++.||+.=| +|.++.++.= ..-+|....|+ +-|++.+..+| .|..+|-|.|+
T Consensus 174 Ll~l~e~~r~~Ifa~~s~~~~~~G~~Rv~eLFR~~---qgr~I~R~vV~tVAqQ~D~mrRVR~~ggaR~~L~~EGIvILg 250 (317)
T 1ev7_A 174 LLHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRV---HGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILG 250 (317)
T ss_dssp GGSSCHHHHHHHHCCCC----CHHHHHHHHHHHHC---CSSEECHHHHHHHHCSSCTGGGTSSSSSSSSSSGGGTEEEEC
T ss_pred HHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEC
T ss_conf 42599889999855775445640579999999998---585575999999882211666652378457663406679975
Q ss_pred C
Q ss_conf 8
Q gi|254780689|r 342 N 342 (345)
Q Consensus 342 ~ 342 (345)
.
T Consensus 251 ~ 251 (317)
T 1ev7_A 251 H 251 (317)
T ss_dssp S
T ss_pred C
T ss_conf 7
No 30
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=23.14 E-value=30 Score=13.31 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHCCHHHHHHHHHCCHHHHHHH----HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8381468999851999999999----9998613899989999999999
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEI----VASAKLLPEISPEELEDIIDEF 77 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i----~~~m~~l~~i~~~~~~~vl~EF 77 (345)
.+|+..+..++++|.. ++.| ..+...++.|++...+.|.+.|
T Consensus 31 GIG~k~ak~Ll~~F~s--i~~i~~As~eeL~~v~GIg~~~A~~I~~~l 76 (78)
T 1kft_A 31 GVGPKRRQMLLKYMGG--LQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp TCSSSHHHHHHHHHSC--HHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCC--HHHHHHHCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9329999999999299--499988379999807998999999999996
No 31
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=22.89 E-value=30 Score=13.28 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=19.0
Q ss_pred HCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 3814689998519999999999-----9986138999899999999999
Q gi|254780689|r 35 MEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFE 78 (345)
Q Consensus 35 LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~ 78 (345)
+||..|-.||..++++++.+.. ...++++.|.+...++++-|..
T Consensus 80 IGpK~Al~ILs~~~~~~l~~aI~~~D~~~L~~vpGIGkKtAerIilELk 128 (191)
T 1ixr_A 80 VGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 3778898887259999999999839999950188846889999999998
No 32
>3bpj_A Eukaryotic translation initiation factor 3 subunit J; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, polymorphism; 1.85A {Homo sapiens}
Probab=22.64 E-value=27 Score=13.55 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=11.3
Q ss_pred HHCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 838146899985199999999999986
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIVASAK 60 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~~~m~ 60 (345)
.+-++..-.+...|+.++|++|...+.
T Consensus 38 ~fle~l~R~l~~~L~s~~iKkv~sslt 64 (80)
T 3bpj_A 38 SFLEVLVRDVCISLEIDDLKKITNSLT 64 (80)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999980299999999999999
No 33
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=22.45 E-value=31 Score=13.23 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHCCHHHHHHH
Q ss_conf 898999999961008999999
Q gi|254780689|r 282 TSIETQNAILHCLSNRQRKII 302 (345)
Q Consensus 282 a~~e~~e~il~nmS~Ra~~~l 302 (345)
.++.+.++++.++++-..++.
T Consensus 317 L~P~~~~~l~~~~~~~~~~~~ 337 (389)
T 3a5i_A 317 LEPGLADRLLAQTQEALSRQE 337 (389)
T ss_dssp CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 997999999999999999999
No 34
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Mycobacterium tuberculosis}
Probab=21.70 E-value=26 Score=13.71 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=15.1
Q ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1999999999999861389998999999
Q gi|254780689|r 46 HFTHAELKEIVASAKLLPEISPEELEDI 73 (345)
Q Consensus 46 ~l~~~Ei~~i~~~m~~l~~i~~~~~~~v 73 (345)
.|+++||+.|+.....-..++..++...
T Consensus 38 rLtdeev~~Va~~L~~~~~i~~~dI~~~ 65 (103)
T 2kvc_A 38 RLSHDEVKAVANELMRLGDFDQIDIGVV 65 (103)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCSSCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8999999999999985289879999999
Done!