HHSEARCH alignment of GI: 254780689 and SCOP domain: d1lkvx_

Alignment
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=98.77  E-value=9e-07  Score=61.47  Aligned_cols=179  Identities=12%  Similarity=0.167  Sum_probs=140.5

Q ss_pred             HHHHHHHCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Q ss_conf             6854440379223686879999999838146899985199999999999986138999899999999999998510----
Q gi|254780689|r    9 SFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAG----   84 (345)
Q Consensus         9 ~~~~~~~~~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~----   84 (345)
                      ++-+..+...|.      -+|++|..|+++.|+.||..|+++....|...|..+..++++.+..+.+.....+...    
T Consensus         4 ~la~~l~~e~p~------~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   77 (213)
T d1lkvx_           4 QLVNFLQSEHPQ------TIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRT   77 (213)
T ss_dssp             HHHHHHHTSCHH------HHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHH------HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             999999806999------99999972998899999996999999999996050023365999998888874415522010


Q ss_pred             CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC-------CCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCH
Q ss_conf             45665348899997611497999999754411-------34456756789741998999999840386478899995788
Q gi|254780689|r   85 IGLTENSKNIESILEEGLEQNELEKLLNKSDI-------SQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPP  157 (345)
Q Consensus        85 ~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~-------~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~  157 (345)
                      ..-.++...+..+|... +.+.-..++..+..       .....--.|..|..+.+..+..+++.-++++++.++...+.
T Consensus        78 ~~~~~~~~~v~~il~~~-~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~  156 (213)
T d1lkvx_          78 FSKVGGIDTAAEIMNNL-DRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASD  156 (213)
T ss_dssp             HSSCCCHHHHHHHHHTS-CHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCH
T ss_pred             HHCCHHHHHHHHHHHHC-CCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCH
T ss_conf             00130899999999750-12210002000022173331347640156201899720307677877310001210003899


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             8999999837989999999998404899989999999
Q gi|254780689|r  158 SIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIE  194 (345)
Q Consensus       158 ~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie  194 (345)
                      +.++.++..+|...+.-|-..+..++.++.+-+.+..
T Consensus       157 e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         157 ELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9999999969998989998753415997499999999


SCOP domain information

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]