HHSEARCH alignment of GI: 254780689 and SCOP domain: d1qc7a_

Alignment

Probab=99.93  E-value=7.5e-26  Score=187.60  Aligned_cols=95  Identities=20%  Similarity=0.391  Sum_probs=92.5

Q ss_pred             CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r  249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE  328 (345)
Q Consensus       249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~  328 (345)
                      |||||||.++++++++.++++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus         1 MFtFddl~~l~~~~l~~llr~i~~~~l~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~   79 (101)
T d1qc7a_           1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI   79 (101)
T ss_dssp             CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf             9563676558988999999978988999998679999999999863799999999999863-998899999999999999


Q ss_pred             HHHHHHCCCEECCCCC
Q ss_conf             9999986979518888
Q gi|254780689|r  329 AISLLKTNKIELSNPI  344 (345)
Q Consensus       329 ~r~L~~~G~I~l~~~~  344 (345)
                      +|+|+++|+|+|..+.
T Consensus        80 ~r~l~~~G~I~L~~~~   95 (101)
T d1qc7a_          80 IRRLEEAGEIVIARGG   95 (101)
T ss_dssp             HHHHHHTTCCCBCTTC
T ss_pred             HHHHHHCCCEEECCCC
T ss_conf             9999988998842699

SCOP domain information

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]