Query gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] Match_columns 345 No_of_seqs 124 out of 735 Neff 6.8 Searched_HMMs 13730 Date Wed Jun 1 07:32:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780689.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lkvx_ a.118.14.1 (X:) FliG { 100.0 1.8E-39 1.3E-43 277.7 21.0 209 132-341 1-212 (213) 2 d1qc7a_ a.118.14.1 (A:) FliG { 99.9 7.5E-26 5.4E-30 187.6 11.3 95 249-344 1-95 (101) 3 d1lkvx_ a.118.14.1 (X:) FliG { 98.8 9E-07 6.5E-11 61.5 17.5 179 9-194 4-193 (213) 4 d2ouxa1 a.118.26.1 (A:6-135) M 97.8 0.00042 3E-08 43.8 12.7 117 124-249 9-126 (130) 5 d2yvxa1 a.118.26.1 (A:7-131) M 97.2 0.00019 1.4E-08 46.0 4.2 101 128-247 7-107 (125) 6 d2ouxa1 a.118.26.1 (A:6-135) M 96.7 0.02 1.4E-06 32.8 11.2 80 95-177 45-124 (130) 7 d2yvxa1 a.118.26.1 (A:7-131) M 96.2 0.0031 2.3E-07 38.0 4.7 53 124-176 15-67 (125) 8 d2bgwa1 a.60.2.5 (A:160-229) D 56.5 2.8 0.0002 18.5 2.1 40 36-77 22-65 (70) 9 d1kfta_ a.60.2.3 (A:) Excinucl 50.2 6.1 0.00044 16.3 3.0 42 35-78 10-55 (56) 10 d1x2ia1 a.60.2.5 (A:2-69) ATP- 42.8 5.9 0.00043 16.4 2.0 18 60-77 13-30 (68) 11 d1cuka2 a.60.2.1 (A:65-142) DN 36.8 10 0.00074 14.8 6.7 50 34-83 16-70 (78) 12 d1ev7a_ c.52.1.9 (A:) Restrict 35.2 2.5 0.00018 18.8 -0.9 60 280-342 166-242 (302) 13 d2peoa1 a.280.1.1 (A:1-115) Ru 31.0 13 0.00091 14.2 4.4 28 220-247 16-43 (115) 14 d1ixra1 a.60.2.1 (A:63-135) DN 27.1 15 0.0011 13.8 5.2 43 35-77 18-65 (73) 15 d1szaa_ a.118.9.4 (A:) PCF11 p 26.3 15 0.0011 13.7 5.3 37 162-199 92-137 (144) 16 d1hhsa_ e.8.1.6 (A:) dsRNA pha 23.6 17 0.0012 13.4 1.7 54 241-295 598-662 (664) 17 d1bvsa2 a.60.2.1 (A:64-134) DN 23.3 17 0.0012 13.3 5.7 42 35-76 17-63 (71) 18 d2i9ca1 a.118.1.25 (A:3-123) H 22.1 18 0.0013 13.2 5.3 92 69-187 8-102 (121) No 1 >d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=1.8e-39 Score=277.69 Aligned_cols=209 Identities=25% Similarity=0.478 Sum_probs=200.6 Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC---CCCC Q ss_conf 9899999984038647889999578889999998379899999999984048999899999999999972234---4212 Q gi|254780689|r 132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQS---NSNT 208 (345) Q Consensus 132 ~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~---~~~~ 208 (345) ||++|++||++||||++|+||+||+|++||+||..||++.|.+|+.+|+.++.++++.+..++..+...+.+. .... T Consensus 1 dp~~la~~l~~e~p~~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (213) T d1lkvx_ 1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSK 80 (213) T ss_dssp CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSS T ss_pred CHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHC T ss_conf 98999999980699999999972998899999996999999999996050023365999998888874415522010001 Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHH Q ss_conf 36378999995017757799999999986599999999741578998509978999998309888999985388989999 Q gi|254780689|r 209 STGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQN 288 (345) Q Consensus 209 ~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e 288 (345) .+|.+.+++|||++++..++.++.++...||+++..++++||.|+||.++....++.+++++..+.++.|++|++.+.+. T Consensus 81 ~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~e~~~ 160 (213) T d1lkvx_ 81 VGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKE 160 (213) T ss_dssp CCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHH T ss_pred CHHHHHHHHHHHHCCCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCHHHHH T ss_conf 30899999999750122100020000221733313476401562018997203076778773100012100038999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECC Q ss_conf 99961008999999999850058999899999999999999999986979518 Q gi|254780689|r 289 AILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341 (345) Q Consensus 289 ~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~ 341 (345) +||+|||.|++.++.+++..+ |+|+.+||++||++|++.+|+|+++|+|+|. T Consensus 161 ~~l~~~~~~~~~vv~~e~~~~-G~I~~~Die~A~~~i~~~~~~l~~~G~i~l~ 212 (213) T d1lkvx_ 161 KIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 212 (213) T ss_dssp HHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHHTTSSCCC T ss_pred HHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC T ss_conf 999969998989998753415-9974999999999999999999868977740 No 2 >d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]} Probab=99.93 E-value=7.5e-26 Score=187.60 Aligned_cols=95 Identities=20% Similarity=0.391 Sum_probs=92.5 Q ss_pred CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 15789985099789999983098889999853889899999996100899999999985005899989999999999999 Q gi|254780689|r 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE 328 (345) Q Consensus 249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~ 328 (345) |||||||.++++++++.++++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++. T Consensus 1 MFtFddl~~l~~~~l~~llr~i~~~~l~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~ 79 (101) T d1qc7a_ 1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI 79 (101) T ss_dssp CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH T ss_conf 9563676558988999999978988999998679999999999863799999999999863-998899999999999999 Q ss_pred HHHHHHCCCEECCCCC Q ss_conf 9999986979518888 Q gi|254780689|r 329 AISLLKTNKIELSNPI 344 (345) Q Consensus 329 ~r~L~~~G~I~l~~~~ 344 (345) +|+|+++|+|+|..+. T Consensus 80 ~r~l~~~G~I~L~~~~ 95 (101) T d1qc7a_ 80 IRRLEEAGEIVIARGG 95 (101) T ss_dssp HHHHHHTTCCCBCTTC T ss_pred HHHHHHCCCEEECCCC T ss_conf 9999988998842699 No 3 >d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Probab=98.77 E-value=9e-07 Score=61.47 Aligned_cols=179 Identities=12% Similarity=0.167 Sum_probs=140.5 Q ss_pred HHHHHHHCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC---- Q ss_conf 6854440379223686879999999838146899985199999999999986138999899999999999998510---- Q gi|254780689|r 9 SFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAG---- 84 (345) Q Consensus 9 ~~~~~~~~~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~---- 84 (345) ++-+..+...|. -+|++|..|+++.|+.||..|+++....|...|..+..++++.+..+.+.....+... T Consensus 4 ~la~~l~~e~p~------~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 77 (213) T d1lkvx_ 4 QLVNFLQSEHPQ------TIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRT 77 (213) T ss_dssp HHHHHHHTSCHH------HHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHH------HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH T ss_conf 999999806999------99999972998899999996999999999996050023365999998888874415522010 Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC-------CCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCH Q ss_conf 45665348899997611497999999754411-------34456756789741998999999840386478899995788 Q gi|254780689|r 85 IGLTENSKNIESILEEGLEQNELEKLLNKSDI-------SQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPP 157 (345) Q Consensus 85 ~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~-------~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~ 157 (345) ..-.++...+..+|... +.+.-..++..+.. .....--.|..|..+.+..+..+++.-++++++.++...+. T Consensus 78 ~~~~~~~~~v~~il~~~-~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~ 156 (213) T d1lkvx_ 78 FSKVGGIDTAAEIMNNL-DRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASD 156 (213) T ss_dssp HSSCCCHHHHHHHHHTS-CHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCH T ss_pred HHCCHHHHHHHHHHHHC-CCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCH T ss_conf 00130899999999750-12210002000022173331347640156201899720307677877310001210003899 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 8999999837989999999998404899989999999 Q gi|254780689|r 158 SIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIE 194 (345) Q Consensus 158 ~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie 194 (345) +.++.++..+|...+.-|-..+..++.++.+-+.+.. T Consensus 157 e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~ 193 (213) T d1lkvx_ 157 ELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ 193 (213) T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 9999999969998989998753415997499999999 No 4 >d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Probab=97.80 E-value=0.00042 Score=43.84 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=66.5 Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHC Q ss_conf 678974199899999984038647889999578889999998379899999999984048999899999999999-9722 Q gi|254780689|r 124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIV-EMLP 202 (345) Q Consensus 124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~-~~l~ 202 (345) ..+.|..-+.+.+..++..=||.-+|-+|..|+++....++..+|++..++|+..+-.-..+..+++..+...-. .-+. T Consensus 9 l~~~l~~~~~~~l~~~l~~lhpaDiA~~l~~l~~~~r~~l~~~l~~~~~a~vl~~l~~~~~~~~~il~~l~~~~~a~il~ 88 (130) T d2ouxa1 9 LLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADMLA 88 (130) T ss_dssp HHHHHHTTCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHT T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999848799999999859999999999972476899999985208789999981110999999986699999999998 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 34421236378999995017757799999999986599999999741 Q gi|254780689|r 203 QSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKV 249 (345) Q Consensus 203 ~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~m 249 (345) .. ...-+|+|++.++.+..+.+|..+.. +-...|++.| T Consensus 89 ~m------~~DDaadll~~L~~~~~~~iL~~l~~---~~r~~i~~lL 126 (130) T d2ouxa1 89 EM------YTDNAVDLLNMLDKSQKAKYLSLLSS---EEAGEIKELL 126 (130) T ss_dssp TS------CHHHHHHHHHHSCHHHHHHHHHTSCH---HHHHHHHHHT T ss_pred HC------CHHHHHHHHHHCCHHHHHHHHHCCCH---HHHHHHHHHC T ss_conf 76------86879999997999999999985999---9999999984 No 5 >d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Probab=97.16 E-value=0.00019 Score=46.03 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=61.1 Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 74199899999984038647889999578889999998379899999999984048999899999999999972234421 Q gi|254780689|r 128 LKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNSN 207 (345) Q Consensus 128 L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~ 207 (345) |..-+...+..+|..=||.-||-+|..|+++....++..+|.+...+|.. .++++....+-+.+ T Consensus 7 l~~~~~~~l~~~l~~~hpaDiA~~l~~L~~~~r~~l~~~l~~~~~aev~~------~L~~~~~~~il~~l---------- 70 (125) T d2yvxa1 7 LQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLS------HLSPEEQAEYLKTL---------- 70 (125) T ss_dssp TSSCCSHHHHTTTTTSCHHHHHHTTTTSCTTHHHHHTTTSCHHHHHHHHH------TSCHHHHHHTTSSS---------- T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH------HCCHHHHHHHHHHC---------- T ss_conf 78789999999988399999999998299999999982299888899999------67999999999707---------- Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2363789999950177577999999999865999999997 Q gi|254780689|r 208 TSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRP 247 (345) Q Consensus 208 ~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~ 247 (345) +.+.++++++.|+.+....+|+.|....+..+.+|-+ T Consensus 71 ---~~~~~~~~l~~m~~DD~adll~~L~~e~~~~~~~iL~ 107 (125) T d2yvxa1 71 ---PPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKD 107 (125) T ss_dssp ---CHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHGG T ss_pred ---CHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH T ss_conf ---8999999998789457999999788877999999998 No 6 >d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Probab=96.68 E-value=0.02 Score=32.79 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=45.2 Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH Q ss_conf 99976114979999997544113445675678974199899999984038647889999578889999998379899999 Q gi|254780689|r 95 ESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHAD 174 (345) Q Consensus 95 ~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~e 174 (345) +..+-..++++.+..++..++ .+ ...-.+.+..++++.++.++..=+|--+|-+|..|+++.+.+||..++++.|.+ T Consensus 45 r~~l~~~l~~~~~a~vl~~l~--~~-~~~~~~il~~l~~~~~a~il~~m~~DDaadll~~L~~~~~~~iL~~l~~~~r~~ 121 (130) T d2ouxa1 45 RQHLYNYLSPKELADMFDVIE--ED-NENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGE 121 (130) T ss_dssp HHHHHHHSCHHHHHHHHTTSC--TT-SSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHC--CH-HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH T ss_conf 999999852087899999811--10-999999986699999999998768687999999799999999998599999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780689|r 175 IMK 177 (345) Q Consensus 175 v~~ 177 (345) |-. T Consensus 122 i~~ 124 (130) T d2ouxa1 122 IKE 124 (130) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 7 >d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Probab=96.19 E-value=0.0031 Score=38.05 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=32.3 Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 67897419989999998403864788999957888999999837989999999 Q gi|254780689|r 124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM 176 (345) Q Consensus 124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~ 176 (345) .-+.|..+.|..+|.+|..=+|+-...++..++++.++.|+..|+++.|..++ T Consensus 15 l~~~l~~~hpaDiA~~l~~L~~~~r~~l~~~l~~~~~aev~~~L~~~~~~~il 67 (125) T d2yvxa1 15 LREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYL 67 (125) T ss_dssp HHTTTTTSCHHHHHHTTTTSCTTHHHHHTTTSCHHHHHHHHHTSCHHHHHHTT T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH T ss_conf 99998839999999999829999999998229988889999967999999999 No 8 >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Probab=56.47 E-value=2.8 Score=18.54 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=15.6 Q ss_pred CCHHHHHHHHHCCHHHHHHHH----HHHHHCCCCCHHHHHHHHHHH Q ss_conf 814689998519999999999----998613899989999999999 Q gi|254780689|r 36 EKQVSGKLLRHFTHAELKEIV----ASAKLLPEISPEELEDIIDEF 77 (345) Q Consensus 36 Gee~Aa~ilk~l~~~Ei~~i~----~~m~~l~~i~~~~~~~vl~EF 77 (345) |+..|..+++||+. ++.+. .++..++.|++...+.+.+-| T Consensus 22 G~~~a~~L~~~F~s--~~~l~~As~eeL~~v~GIG~~~A~~I~~~~ 65 (70) T d2bgwa1 22 GRRTAERILERFGS--LERFFTASKAEISKVEGIGEKRAEEIKKIL 65 (70) T ss_dssp CHHHHHHHHHHHSS--HHHHTTCCHHHHHHSTTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCC--HHHHHHCCHHHHHCCCCCCHHHHHHHHHHH T ss_conf 79999999998298--899988699999757998999999999998 No 9 >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Probab=50.21 E-value=6.1 Score=16.29 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.1 Q ss_pred HCCHHHHHHHHHCCHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHH Q ss_conf 38146899985199999999999----986138999899999999999 Q gi|254780689|r 35 MEKQVSGKLLRHFTHAELKEIVA----SAKLLPEISPEELEDIIDEFE 78 (345) Q Consensus 35 LGee~Aa~ilk~l~~~Ei~~i~~----~m~~l~~i~~~~~~~vl~EF~ 78 (345) +|+..|..+++||.. ++.|.. +...++.|.+...+.|.+-|+ T Consensus 10 VG~~~a~~L~~~F~s--~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56) T d1kfta_ 10 VGPKRRQMLLKYMGG--LQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56) T ss_dssp CSSSHHHHHHHHHSC--HHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC T ss_conf 009999999999399--9999986499998169979999999999876 No 10 >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Probab=42.77 E-value=5.9 Score=16.40 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=8.8 Q ss_pred HHCCCCCHHHHHHHHHHH Q ss_conf 613899989999999999 Q gi|254780689|r 60 KLLPEISPEELEDIIDEF 77 (345) Q Consensus 60 ~~l~~i~~~~~~~vl~EF 77 (345) ..++.|.+.....+++.| T Consensus 13 ~~I~gIG~~~a~~L~~~f 30 (68) T d1x2ia1 13 EGLPHVSATLARRLLKHF 30 (68) T ss_dssp TTSTTCCHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHC T ss_conf 189996899999999974 No 11 >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Probab=36.85 E-value=10 Score=14.84 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=38.4 Q ss_pred HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 83814689998519999999999-----998613899989999999999999851 Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQFIA 83 (345) Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~~~ 83 (345) .+|+..|-.+|..|+++++.+.. ....+++.|.+...+.++-|....+.. T Consensus 16 GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~K~~~ 70 (78) T d1cuka2 16 GVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKG 70 (78) T ss_dssp SCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGG T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8019999999984899999999980688871229997899999999999999985 No 12 >d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia aerocolonigenes [TaxId: 68170]} Probab=35.18 E-value=2.5 Score=18.84 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=29.4 Q ss_pred CCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHH-------HHHHCCCEECCC Q ss_conf 3889899999996100--------899999999985005899989999--99999999999-------999869795188 Q gi|254780689|r 280 HGTSIETQNAILHCLS--------NRQRKIIEENIVLNDSSIAPREVA--MARRSIVQEAI-------SLLKTNKIELSN 342 (345) Q Consensus 280 kga~~e~~e~il~nmS--------~Ra~~~l~eel~~~~g~v~~~dve--~Aq~~I~~~~r-------~L~~~G~I~l~~ 342 (345) ...++..+++||+.=| +|.++.++.= ..-||....|+ +.|++.+..+| -|+.+|-|.|+. T Consensus 166 l~lp~~~r~~Ifa~~s~~gn~~G~~R~aeLFR~~---qg~pI~r~vi~tVa~Q~D~mrRVR~~ggaR~~L~~EGIliL~g 242 (302) T d1ev7a_ 166 LHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRV---HGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILGH 242 (302) T ss_dssp GSSCHHHHHHHHCCCC----CHHHHHHHHHHHHC---CSSEECHHHHHHHHCSSCTGGGTSSSSSSSSSSGGGTEEEECS T ss_pred HCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECC T ss_conf 5199889999856765344530479999999998---3871768999999851567777633784566524165799737 No 13 >d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]} Probab=30.97 E-value=13 Score=14.23 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=13.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0177577999999999865999999997 Q gi|254780689|r 220 NELEKPQVDKLLTSLQEVSKEAFDKVRP 247 (345) Q Consensus 220 n~l~~~~~~~iL~~L~~~d~~la~~Ir~ 247 (345) |.+.-.....++.+|.+.||..+..+.+ T Consensus 16 ~yfTy~AvrvVl~Ql~e~np~~~~wL~~ 43 (115) T d2peoa1 16 SYLTYQALRTVLAQLGETNPPLALWLHN 43 (115) T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999999999999996259188999999 No 14 >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Probab=27.15 E-value=15 Score=13.80 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=17.2 Q ss_pred HCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHH Q ss_conf 3814689998519999999999-----998613899989999999999 Q gi|254780689|r 35 MEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEF 77 (345) Q Consensus 35 LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF 77 (345) +|+..|-.+|..++.+|+.+.. ...++++.|.+...+.++-|. T Consensus 18 IGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eL 65 (73) T d1ixra1 18 VGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALEL 65 (73) T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH T ss_conf 079999999987368899999980689986529997799999999999 No 15 >d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=26.27 E-value=15 Score=13.70 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=21.3 Q ss_pred HHHHHCCHHHHHHHHHHHHHC-C--------CCCHHHHHHHHHHHHH Q ss_conf 999837989999999998404-8--------9998999999999999 Q gi|254780689|r 162 SVLLRFPNKIHADIMKRTVNL-P--------KISPYIQKTIEKCIVE 199 (345) Q Consensus 162 ~VL~~Lp~e~r~ev~~Ria~l-~--------~v~~ev~~~ie~~L~~ 199 (345) .+....|++.|..+. |+..+ . -.++++++.|+..|.. T Consensus 92 ~~y~~~~~~~r~kl~-rll~iW~~r~~~~~~vFp~~~l~~ie~~L~~ 137 (144) T d1szaa_ 92 RTYLLVDNTTRTKLI-NMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144) T ss_dssp HHHTTSCHHHHHHHH-HHHHHHSSGGGCSSCSSCHHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999829999999999-9999985668888688999999999999987 No 16 >d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase {Bacteriophage PHI-6 [TaxId: 10879]} Probab=23.59 E-value=17 Score=13.40 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=45.5 Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHH-----------HCCCHHHHHHHHCCCCHHHHHHHHHHCC Q ss_conf 999999741578998509978999998-----------3098889999853889899999996100 Q gi|254780689|r 241 AFDKVRPKVFLFDDLITLSSHDLSIVF-----------NNISLEVLGKALHGTSIETQNAILHCLS 295 (345) Q Consensus 241 la~~Ir~~mF~FeDl~~l~~~~l~~ll-----------~evd~~~l~~ALkga~~e~~e~il~nmS 295 (345) +...| .+|-.|+++..|.+-++..|. .+|+.+++-+++.|.+.++.|.||.+.- T Consensus 598 l~~~~-~~~~~~~~~~~l~~~d~~vL~DP~km~~kwt~~eI~~~V~e~v~~~l~~~~~e~~~~sv~ 662 (664) T d1hhsa_ 598 LSRYV-ASMARQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIHEVLMHGVSVEKTERFLRSVM 662 (664) T ss_dssp HHTTC-TTSCTTCCSTTCCHHHHHHHHCGGGGGTTCCGGGSCHHHHHHHEEEECHHHHHHHHHHHS T ss_pred HHHHH-HCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99987-503333332336712255624831532117766518789999984355999999988415 No 17 >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Probab=23.29 E-value=17 Score=13.33 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=17.7 Q ss_pred HCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHH Q ss_conf 3814689998519999999999-----99861389998999999999 Q gi|254780689|r 35 MEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDE 76 (345) Q Consensus 35 LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~E 76 (345) +|+..|-.+|..++++++.+.. ....+++.|.+...+.++-| T Consensus 17 IGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~e 63 (71) T d1bvsa2 17 VGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLE 63 (71) T ss_dssp CCHHHHHHHHHHSCHHHHHHHTTTTCHHHHHTSTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHH T ss_conf 17999999998499999999998179888431999779999999999 No 18 >d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=22.07 E-value=18 Score=13.18 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=49.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCH---HHHHHHHHCCCH Q ss_conf 99999999999985104566534889999761149799999975441134456756789741998---999999840386 Q gi|254780689|r 69 ELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDP---GVIADFLSKEHP 145 (345) Q Consensus 69 ~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~---~~La~~L~~EhP 145 (345) .++.++..|......+.... ......+++.+..+.. ..++.|...++ +.|..+|.+++| T Consensus 8 ~~~~Lv~~F~~~~i~q~~A~-----------~~~d~~~~NR~~~kl~-------~~~~eLk~~~g~~R~aLl~Ll~h~n~ 69 (121) T d2i9ca1 8 TTQDLVALFAKVTVEQDDAL-----------LGNQISRFNRLFGVMA-------EIADELKARDGDQRTALLSLFEYPNM 69 (121) T ss_dssp CHHHHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHHH-------HHHHHHHHSTTCGGGGGGGGGGSSCH T ss_pred CHHHHHHHHHHHHHHHHHHH-----------HHCCHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHHHHHCCCH T ss_conf 59999999999999999999-----------8153789999999999-------99999985586278999999879889 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH Q ss_conf 478899995788899999983798999999999840489998 Q gi|254780689|r 146 QTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISP 187 (345) Q Consensus 146 QtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ 187 (345) |+-- .||.-+..+.++....|+.+|+..+..+- T Consensus 70 ~VRl---------~AA~~tL~~~p~~A~~vL~~ia~~~~~~~ 102 (121) T d2i9ca1 70 QVRL---------QAAKLTLAVAPVKAREQLEAIVSSKWFPQ 102 (121) T ss_dssp HHHH---------HHHHTTTTTCHHHHHHHHHHHHHHTCTTH T ss_pred HHHH---------HHHHHHHHCCHHHHHHHHHHHHHCCCCCC T ss_conf 9999---------99999984186999999999985776776 Done!