PSIBLAST alignment of GI: 254780689 and protein with PDB id: 1lkv

>gi|22219246|pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of The Flagellar Rotor Protein Flig Length = 232

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 121 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV 180
               +  +++TDP  + +FL  EHPQT A VLS + P + A +L   P ++  +++KR  
Sbjct: 1   QVKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIA 60

Query: 181 NLPKISPYIQKTIEKCIVEMLPQSNSN---TSTGPEKVANLINELEKPQVDKLLTSLQEV 237
            L + SP + K IE+ + + +    S       G +  A ++N L++    K++  L + 
Sbjct: 61  LLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQE 120

Query: 238 SKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNR 297
           + E  D++R ++F+F+D++ L    + +V   +    L  AL G S E +  I   +S R
Sbjct: 121 NPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKR 180

Query: 298 QRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPI 344
              ++++ +      +  ++V  A++ I+     L +  +I ++   
Sbjct: 181 AAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIARGG 226