RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein
G [Candidatus Liberibacter asiaticus str. psy62]
(345 letters)
>gnl|CDD|180201 PRK05686, fliG, flagellar motor switch protein G; Validated.
Length = 339
Score = 304 bits (780), Expect = 3e-83
Identities = 95/334 (28%), Positives = 175/334 (52%), Gaps = 7/334 (2%)
Query: 11 KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70
+ LT +KA +LLA+ ++ + K+L+H T E++++ A+ L +SPE++
Sbjct: 1 DAEKAKADLDELTGPEKAAILLLALGEEAAAKVLKHLTEEEVQKLSAAMANLRNVSPEQV 60
Query: 71 EDIIDEFESQFIAGIGLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLK 129
E +++EFE +F AG + + S+LE+ L + + + +L + S S +D L+
Sbjct: 61 EAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGT--SGFDFLR 118
Query: 130 ETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYI 189
+ DP +A+F+ EHPQT A +LS + P A +L P ++ AD+M R L +SP
Sbjct: 119 KMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEA 178
Query: 190 QKTIEKCIVEML---PQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVR 246
K +E+ + + L ++ G + VA ++N L++ +L SL+E E +K++
Sbjct: 179 LKEVEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEEEDPELAEKIK 238
Query: 247 PKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENI 306
+F+F+DL+ L + + + +VL AL G S E + L +S R +++ E++
Sbjct: 239 DLMFVFEDLVDLDDRSIQRLLREVDNDVLALALKGASEELREKFLSNMSKRAAEMLREDL 298
Query: 307 VLNDSSIAPREVAMARRSIVQEAISLLKTNKIEL 340
+ +V A++ IVQ A L + +I L
Sbjct: 299 E-ALGPVRLSDVEEAQKKIVQIARRLAEAGEIVL 331
>gnl|CDD|161765 TIGR00207, fliG, flagellar motor switch protein FliG. The fliG
protein along with fliM and fliN interact to form the
switch complex of the bacterial flagellar motor located
at the base of the basal body. This complex interacts
with chemotaxis proteins (eg CHEY). In addition the
complex interacts with other components of the motor
that determine the direction of flagellar rotation. The
model contains putative members of the fliG family at
scores of less than 100 from Agrobacterium radiobacter
and Sinorhizobium meliloti as well as fliG-like genes
from treponema pallidum and Borrelia burgdorferi. That
is why the suggested cutoff is set at 20 but was set at
100 to construct the family.
Length = 338
Score = 121 bits (304), Expect = 4e-28
Identities = 81/320 (25%), Positives = 166/320 (51%), Gaps = 5/320 (1%)
Query: 22 LTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
LT K KA +L+++ + S ++ +H + E++ + A + +I ++ +D+++EFE
Sbjct: 9 LTGKQKAAILLISIGEDRSAEVFKHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIA 68
Query: 82 IAGIGLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFL 140
A + + +LE+ L + + +LN S + + L++ +P IADF+
Sbjct: 69 EAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGF-EFLRKAEPQQIADFI 127
Query: 141 SKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEM 200
+EHPQT A +LS + P+ A +L FP ++ A++ +R + + SP + +E+ +
Sbjct: 128 QQEHPQTIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGK 187
Query: 201 LPQSNSNTST--GPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITL 258
L NS+ + G VA +IN +++ ++TSL+E E ++++ ++F+F+D++ L
Sbjct: 188 LDSLNSDYTKMGGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDL 247
Query: 259 SSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREV 318
+ V + E L AL G + L+ +S R +I++E++ + ++V
Sbjct: 248 DDRSIQRVLREVDSEDLLLALKGAEQPLREKFLNNMSQRAAEILKEDME-FLGPVRLKDV 306
Query: 319 AMARRSIVQEAISLLKTNKI 338
A++ IV L +T +I
Sbjct: 307 EEAQKKIVSIVRKLEETGEI 326
>gnl|CDD|180874 PRK07194, fliG, flagellar motor switch protein G; Reviewed.
Length = 334
Score = 97.4 bits (243), Expect = 4e-21
Identities = 70/320 (21%), Positives = 143/320 (44%), Gaps = 10/320 (3%)
Query: 26 DKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGI 85
++A +LL+M ++ + +++ + E++ + L I ++ ++ F +
Sbjct: 11 EQAAILLLSMGEEAAAMVMQQLSREEVQRLSQKMARLSGIKVDQARQVLQRFFDDYREQS 70
Query: 86 GLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEH 144
G+ S++ ++ L + L + + L+N I + L+ DP +A ++ EH
Sbjct: 71 GINGASRSYLQRTLNKALGGDIAKSLIN--SIYGDEIRHRMQRLQWVDPQQLARLIANEH 128
Query: 145 PQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYI----QKTIEKCIVEM 200
Q A L+ +PP A+VL P DI+ R L + + + IE+C + +
Sbjct: 129 LQMQAVFLAFLPPESAAAVLKYLPEDRQDDILYRIAQLDDVDRDVVDELDELIERC-LAV 187
Query: 201 LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSS 260
L + + G ++ A++IN + +L+ L+E +E +++ ++ F L S
Sbjct: 188 LSEQSHTKVIGVKQAADIINRFPGDR-QQLMEMLKEHDEEVVNEIEDNMYDFFILSRQSE 246
Query: 261 HDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAM 320
L + + + +E+ AL GT + AIL + RQ + +E I + V
Sbjct: 247 ETLQRLMDEVPMELWAVALKGTEPALRQAILRVMPKRQAQALEAQIERL-GPVPLSRVEQ 305
Query: 321 ARRSIVQEAISLLKTNKIEL 340
AR+ I+ L + +IEL
Sbjct: 306 ARKEIMALVRELAEAGEIEL 325
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 31.4 bits (72), Expect = 0.35
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 52 LKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEE 100
L E+ +S K LPE EE +DI+ ++E F G E K+ E I++E
Sbjct: 7 LNELESSLKKLPE---EERKDILYDYEEHFYEGE---EEGKSEEEIIKE 49
>gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein
14. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Length = 445
Score = 31.3 bits (71), Expect = 0.37
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 229 KLLTSLQEVSKEAFDK-VRPKVFL-FDDLITL-------SSHDLSIVFNNISLEVLGKAL 279
LT L E+ +E ++ P +F DD++ L + L ++ +L + G+A
Sbjct: 314 SDLTKLTEIGREIYESEGIPTLFAVLDDVMALIAKRLIEQASKLGLIQEKTTLGITGRA- 372
Query: 280 HGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMAR 322
G + IL L N EEN+V D +A MAR
Sbjct: 373 -GITGYKPELILEYLKNSFLWDKEENVVFVDDGLALGAAVMAR 414
>gnl|CDD|162183 TIGR01063, gyrA, DNA gyrase, A subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV.
Length = 800
Score = 30.7 bits (70), Expect = 0.56
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 50 AELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEK 109
A+L++I+AS + + EI EELE+I ++F I+ + E ++E
Sbjct: 444 ADLEDILASEERVLEIIREELEEIKEQF------------GDPRRTEIVYDESEDIDIED 491
Query: 110 LLNKSDI 116
L+ + ++
Sbjct: 492 LIARENV 498
>gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 30.0 bits (69), Expect = 0.85
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 42 KLLRHFT--HAELKEIVASAKLLPEISPEELEDIIDEFESQFIA 83
+LL + HA+L E + K L + +L+ I+EF+ F A
Sbjct: 459 ELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFAA 502
>gnl|CDD|180128 PRK05560, PRK05560, DNA gyrase subunit A; Validated.
Length = 805
Score = 29.6 bits (68), Expect = 1.2
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 50 AELKEIVASAKLLPEISPEELEDIIDEF 77
A+LK+I+AS + L EI EEL +I ++F
Sbjct: 447 ADLKDILASPERLLEIIKEELLEIKEKF 474
>gnl|CDD|181200 PRK08025, PRK08025, lipid A biosynthesis palmitoleoyl
acyltransferase; Reviewed.
Length = 305
Score = 29.3 bits (66), Expect = 1.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 41 GKLLRHFTHAELKEIVASAK-----LLPEISPEELEDIIDE-FESQFIAGIGLTE 89
G++ R F LK + A+ P++S EE E +I E F S G+ L E
Sbjct: 45 GRMSRPF----LKRRESIARKNLELCFPQMSAEEREKMIAENFRS---LGMALLE 92
>gnl|CDD|178078 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 29.0 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 50 AELKEIVASAKLLPE-----ISPEELEDIIDEFESQFI 82
A+LKEIV KL+P+ + + LE +E ES FI
Sbjct: 76 AQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFI 113
>gnl|CDD|150206 pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. Cas
are a group of proteins associated with clustered
regularly interspaced short palindromic repeats - CRISPS
- of DNA found in nearly half of bacterial and archaeal
genomes. The family describes Cas proteins of about 400
residues that include the motif [VIL]-D-x-[ST]-H-[GS].
The CRISPR and associated proteins are thought to be
involved in the evolution of host resistance. The exact
molecular function of this family is currently unknown.
Length = 387
Score = 28.5 bits (64), Expect = 2.2
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 47 FTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNE 106
A I EIS EELE +++ F + + + I+++ E ++ +
Sbjct: 297 ELRALFINIYKLFLEKSEISLEELEKLLELFFEREVISKIIKNELSKIKNLAENIKDRTK 356
Query: 107 LEKLLNKSD 115
L + ++ S+
Sbjct: 357 LSEYIDNSE 365
>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 28.5 bits (65), Expect = 2.7
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 48 THAELKEIV-ASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIE-SILEEG---L 102
T L E++ A A+LL E LE+ E E E K+ + E+G +
Sbjct: 311 TGQGLDELLYAVAELLEETPEFPLEEEEVEEEVY----YKFEEEEKDFTITRDEDGVFVV 366
Query: 103 EQNELEKLLNKSDISQENN----------NSIWDHLKE 130
++E+L ++ +++ + + D L+E
Sbjct: 367 SGEKIERLFKMTNFNRDESLRRFARQLRKMGVDDALRE 404
>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 28.5 bits (65), Expect = 2.8
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 65 ISPEELEDIIDEFESQFIAGIG 86
++ EE + ++E+ +F+A +G
Sbjct: 150 LTEEEYREALEEYGDEFVAKMG 171
>gnl|CDD|152877 pfam12443, AKNA, AT-hook-containing transcription factor. This
domain family is found in eukaryotes, and is
approximately 110 amino acids in length. This family
contains a transcription factor which regulates the
expression of the costimulatory molecules on
lymphocytes.
Length = 106
Score = 28.3 bits (63), Expect = 2.8
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 194 EKCIVEMLPQSNSNTSTGPEKVANLINELE------KPQVDKLLTSLQEVSKE 240
K E+ P S G + I ELE Q+++L + + KE
Sbjct: 22 LKACRELHPTPQLAGSKGSPYIFQKIRELEAEIYKLGEQLEELKEHVDQTQKE 74
>gnl|CDD|181589 PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
acyltransferase; Validated.
Length = 314
Score = 27.9 bits (63), Expect = 4.5
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 62 LPEISPEELEDIIDE-FES--QFIAGIG--LTENSKNIES--------ILEEGLEQNE 106
PE S E E IIDE F + Q + + + K+++ ILEE E
Sbjct: 74 FPEKSEAEREAIIDEMFATAPQAMLMMAELALRSPKHLQRRVEWHGLEILEEARANGE 131
>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p;
Reviewed.
Length = 300
Score = 27.5 bits (62), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 53 KEIVASAKLLPEISPEELEDIIDEFE 78
KE V L ++ E++ + EF
Sbjct: 84 KEYVCVMHLHGDVPEEDIRKVFKEFT 109
>gnl|CDD|180000 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 27.3 bits (62), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 185 ISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEK 224
I+P KTI+K I ++L +++ LI ELEK
Sbjct: 584 ITP---KTIKKKIRDILDSVYKKDKLSKKELEKLIKELEK 620
>gnl|CDD|149898 pfam08974, DUF1877, Domain of unknown function (DUF1877). This
domain is found in a set of hypothetical bacterial
proteins.
Length = 165
Score = 27.3 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 19 PVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEI--SPEELEDIIDE 76
P L ++ I A+E L F E KE A++ P+I S EE ++I +E
Sbjct: 84 PARLITAEEVKEIAEALESLDFDDLRARFDAEEFKE----AEIYPDIWDSEEEKDEIFEE 139
Query: 77 FESQF 81
F
Sbjct: 140 LLEYF 144
>gnl|CDD|184842 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 27.1 bits (60), Expect = 6.4
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 36 EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77
E ++S LL ++AEL + L P+ +P++LE+II +F
Sbjct: 184 EMRLSNFLLWQSSYAEL---FFTPILWPDFTPKDLENIISDF 222
>gnl|CDD|177801 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 27.1 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 160 GASVLLRFPNKIHADIMKRTVNL 182
G + LRFP ++++D+ K VNL
Sbjct: 235 GVTCCLRFPGQLNSDLRKLAVNL 257
>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
Length = 416
Score = 27.2 bits (61), Expect = 6.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 15/58 (25%)
Query: 87 LTENSKNIESILEEGLEQNELEKLLNKSDISQEN--------NNSIWDHLKETDPGVI 136
+T ++K EG E LEKL+ ++D+ EN W+ ++E +P +I
Sbjct: 70 ITLDTKT-----PEGKEV--LEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLI 120
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 26.9 bits (60), Expect = 7.1
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 165 LRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVE 199
N+ MK P + +I++ ++K I E
Sbjct: 1 QTIDNETQYINMKEKHKNPPLPDFIEERLDKYIEE 35
>gnl|CDD|164878 PHA01971, PHA01971, hypothetical protein.
Length = 123
Score = 26.8 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 53 KEIVASAKLLPEISPEELEDII 74
KEI A P I+P+ +E II
Sbjct: 8 KEIQAKGLTAPRITPQHIESII 29
>gnl|CDD|128479 smart00182, CULLIN, Cullin.
Length = 142
Score = 26.9 bits (60), Expect = 8.2
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 89 ENSKNIESIL--EEGLE-QNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHP 145
+ +N+ + L E G E ++LE++ +S++ N S D L+ I D
Sbjct: 29 DAEENMITKLKQECGYEFTSKLERMFRDISLSKDLNQSFKDMLENNSNKPIIDL------ 82
Query: 146 QTTAYVLS 153
VL+
Sbjct: 83 --NVRVLT 88
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 26.7 bits (59), Expect = 8.3
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 83 AGIGLTENSKNIESILEEGLEQNELEKLLNKSDIS-----QENNN-SIWDHLKETDPGVI 136
I N+ N E L Q+ L + D+S N N S+W H E D +
Sbjct: 238 NVIKKASNAPNF---YPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSIT 294
Query: 137 A 137
A
Sbjct: 295 A 295
>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 26.7 bits (60), Expect = 9.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 44 LRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
L ++AEL + SA + +I ++L+ II + F
Sbjct: 46 LLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTF 83
>gnl|CDD|178561 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 26.7 bits (59), Expect = 9.1
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 289 AILHCLSNRQR----KII-----EENIV----------LNDSSIAPREVAMARRSIVQEA 329
AIL+ ++ R I+ +EN L DS+ +P EVA R +V+E
Sbjct: 1046 AILNAIAVRHGSSLLNILDPYQKDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEG 1105
Query: 330 ISLLKTNKIELSNPIK 345
S +K +PI+
Sbjct: 1106 FSAIKLKVGRRVSPIQ 1121
>gnl|CDD|150721 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 26.8 bits (60), Expect = 9.2
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 47 FTHAELKEIVASAKLLPE-------ISPEELEDIIDEFESQFIAGIGLTENSKNIESILE 99
F +LK++ E + E L ++++EF ++ G TE ++ + +LE
Sbjct: 147 FGGGKLKKLKWETPRRKEASGAVGRLDTEGLREVLEEFFAEL----GETEYTEELLELLE 202
Query: 100 EGLEQNE 106
E ++E
Sbjct: 203 EAYLESE 209
>gnl|CDD|181974 PRK09590, celB, cellobiose phosphotransferase system IIB component;
Reviewed.
Length = 104
Score = 26.7 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 195 KCIVEMLPQSNSNTSTGPEKVANLINE 221
K +V++ PQ+ G EK+A LI E
Sbjct: 76 KPVVQIPPQAYIPIPMGIEKMAKLILE 102
>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP.
Length = 221
Score = 26.5 bits (59), Expect = 9.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 57 ASAKLLPEISPEELEDII 74
AK +++PEEL +I+
Sbjct: 151 PDAKKFDKLTPEELVEIV 168
>gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 26.5 bits (59), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 201 LPQSNSNTSTGPEKVANLINELEKPQVDKLL 231
LPQ + + PE+ LI E+ P V K +
Sbjct: 101 LPQPRTGLAGSPEEALKLIEEIGFPVVLKPV 131
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.312 0.130 0.346
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,379,217
Number of extensions: 345817
Number of successful extensions: 927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 65
Length of query: 345
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 251
Effective length of database: 3,963,321
Effective search space: 994793571
Effective search space used: 994793571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (25.9 bits)