RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] (345 letters) >d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Length = 213 Score = 92.5 bits (229), Expect = 4e-20 Identities = 53/213 (24%), Positives = 106/213 (49%), Gaps = 4/213 (1%) Query: 132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQK 191 DP + +FL EHPQT A VLS + P + A +L P ++ +++KR L + SP + K Sbjct: 1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVK 60 Query: 192 TIEKCIVEM---LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPK 248 IE+ + + + G + A ++N L++ K++ L + + E D++R + Sbjct: 61 EIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRR 120 Query: 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVL 308 +F+F+D++ L + +V + L AL G S E + I +S R ++++ + Sbjct: 121 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEY 180 Query: 309 NDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341 + ++V A++ I+ L + +I ++ Sbjct: 181 M-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 212 >d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]} Length = 101 Score = 69.4 bits (170), Expect = 5e-13 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 250 FLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLN 309 F+F+D++ L + +V + L AL G S E + I +S R ++++ + Sbjct: 2 FVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELE-Y 60 Query: 310 DSSIAPREVAMARRSIVQEAISLLKTNKIELS 341 + ++V A++ I+ L + +I ++ Sbjct: 61 MGPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 92 >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} Length = 256 Score = 31.4 bits (69), Expect = 0.12 Identities = 4/40 (10%), Positives = 16/40 (40%) Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81 + ++ ++ ++ L +E+ +I+ E + Sbjct: 216 WQIENYKPDKVYKVEGGDHKLQLTKTKEIAEILQEVADTY 255 >d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 326 Score = 30.4 bits (67), Expect = 0.21 Identities = 6/24 (25%), Positives = 15/24 (62%) Query: 50 AELKEIVASAKLLPEISPEELEDI 73 +L E + + ++LP++S + +I Sbjct: 293 EQLMENIGAIQVLPKLSSSIVHEI 316 >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} Length = 297 Score = 30.3 bits (66), Expect = 0.24 Identities = 9/36 (25%), Positives = 11/36 (30%) Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77 L A L EI LP L ++I Sbjct: 257 HLAGLIPTARLAEIPGMGHALPSSVHGPLAEVILAH 292 >d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 Score = 29.5 bits (65), Expect = 0.41 Identities = 7/29 (24%), Positives = 16/29 (55%) Query: 54 EIVASAKLLPEISPEELEDIIDEFESQFI 82 E+V + + P ++ EE++ ++D I Sbjct: 15 ELVEAERHTPSLAAEEVQALLDARAEAVI 43 >d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Score = 29.3 bits (65), Expect = 0.46 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 36 EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQ 80 E ++S LL +AE + + L P+ ++ E ++ F ++ Sbjct: 186 EHRISNFLLWQIAYAE---LYFTDVLWPDFDEQDFEGALNAFANR 227 >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} Length = 283 Score = 28.6 bits (62), Expect = 0.71 Identities = 7/36 (19%), Positives = 12/36 (33%) Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77 KLL + A L +E ++ +F Sbjct: 244 KLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDF 279 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Length = 300 Score = 28.3 bits (63), Expect = 0.90 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289 D LI S+H + N+ L V+G ++ ++T N Sbjct: 55 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNP 95 >d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Score = 28.2 bits (62), Expect = 0.91 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Query: 36 EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFES 79 E+++S L+ +++E V + P+ + E L I +++ Sbjct: 188 EERLSNFLIWQCSYSEF---VFIDEFWPDFNEESLAQCISIYQN 228 >d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum bicolor [TaxId: 4558]} Length = 484 Score = 27.5 bits (60), Expect = 1.6 Identities = 7/16 (43%), Positives = 7/16 (43%) Query: 123 SIWDHLKETDPGVIAD 138 S WDH P I D Sbjct: 40 STWDHFCHNFPEWIVD 55 >d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]} Length = 300 Score = 27.5 bits (61), Expect = 1.6 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%) Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289 + + H+ SI+ L V+G +HG + N Sbjct: 55 HEYSIMRLHNFSIISGTAFLGVVGATMHGVTLKIKVSQTNM 95 >d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]} Length = 739 Score = 27.5 bits (61), Expect = 1.8 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 244 KVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILH 292 K RP + F + + +H L+ +F SL G +H +I + H Sbjct: 159 KFRPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIH-VAIPE-SRGQH 205 >d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]} Length = 131 Score = 27.2 bits (60), Expect = 1.9 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 9 SFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHF--THAELKEIVASAKLLPEIS 66 S + ++++ + + + + + L H H L + + + E S Sbjct: 55 SPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEES 114 Query: 67 PEELEDIIDEFESQFIA 83 +L++I+ F + F A Sbjct: 115 DAKLKEIVTNFLAGFEA 131 >d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Transmissible gastroenteritis virus [TaxId: 11149]} Length = 299 Score = 27.5 bits (61), Expect = 1.9 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289 +++ ++ H+ S+ NN+ L V+ G + N Sbjct: 55 NEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNP 95 >d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 129 Score = 27.2 bits (60), Expect = 2.0 Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 46 HFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81 E +EI++S K E + L++ I E +F Sbjct: 94 KTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 129 >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Score = 27.0 bits (58), Expect = 2.2 Identities = 12/66 (18%), Positives = 22/66 (33%) Query: 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184 + IA ++ L+ P S ++ N I R+ N P Sbjct: 135 HRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194 Query: 185 ISPYIQ 190 + PY++ Sbjct: 195 VRPYVK 200 >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 Score = 26.8 bits (59), Expect = 2.4 Identities = 13/28 (46%), Positives = 18/28 (64%) Query: 50 AELKEIVASAKLLPEISPEELEDIIDEF 77 AEL I+ SA L E+ EELE + ++F Sbjct: 457 AELLRILGSADRLMEVIREELELVREQF 484 >d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]} Length = 490 Score = 26.7 bits (58), Expect = 2.9 Identities = 7/16 (43%), Positives = 7/16 (43%) Query: 123 SIWDHLKETDPGVIAD 138 SIWD P I D Sbjct: 46 SIWDTFTHKYPEKIKD 61 >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} Length = 387 Score = 26.8 bits (59), Expect = 3.0 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 217 NLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275 NL+N + + D + + + K P+ +D I ++ +++ + NIS EVL Sbjct: 261 NLLNHFTQAEGDLFIGD----HYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVL 315 >d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 654 Score = 26.6 bits (58), Expect = 3.4 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 12/76 (15%) Query: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKL---LNKSDIS 117 L ++S +++E+ E + + + + + + E E L +++ Sbjct: 1 LRWDLSAQQIEERTRE---------LIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVT 51 Query: 118 QENNNSIWDHLKETDP 133 +I D + P Sbjct: 52 YTVQRNILDFPQHVSP 67 >d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137 Score = 26.4 bits (57), Expect = 3.8 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 50 AELKEIVASAKL-LPEISPEELEDIIDE 76 A K V +AK + +SP++ ++ E Sbjct: 9 ATFKAQVKAAKADMVMLSPKDAYKLLQE 36 >d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 254 Score = 26.4 bits (58), Expect = 4.0 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 32 LLAMEKQVSGKLLRHFTHAELKEIVASAKL-----LPEISPEELEDIIDEFESQFI 82 ++ ME+ +G L F H L+E I EEL I FE++ Sbjct: 72 VMNMEESNNGSLSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLIT--FETEVY 125 >d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 125 Score = 26.1 bits (57), Expect = 4.6 Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNL 182 S+ + L+E D + + L + HPQ + + VL P A+++ ++ Sbjct: 2 SLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLS-HLSP 60 Query: 183 PKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAF 242 + + Y++ + E+L + + + + + + +L L ++ Sbjct: 61 EEQAEYLKTLPPWRLREILEELSLDDLA---DALQAVRKEDPAYFQRLKDLLDPRTRAEV 117 Query: 243 DKV 245 + + Sbjct: 118 EAL 120 >d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 130 Score = 25.8 bits (56), Expect = 4.9 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 4/107 (3%) Query: 51 ELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKL 110 + +++ +L + E + + + + K + + + E NE K Sbjct: 14 KNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDNENMKD 73 Query: 111 LNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPP 157 +++ + D L E D L+ A LS++ Sbjct: 74 Y----LAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSS 116 >d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} Length = 207 Score = 26.0 bits (57), Expect = 5.0 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 67 PEELEDIIDEFESQFIAGIG-LTENSKNIESILEEGLEQN 105 P+EL I+ FE F L +K+ S LE+GL + Sbjct: 3 PKELMQQIENFEKIFTVPTETLQAVTKHFISELEKGLSKK 42 >d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 131 Score = 26.0 bits (57), Expect = 5.4 Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Query: 44 LRHFTHAELKEIVASAKLLPEISPE-ELEDIIDEFESQFIA 83 + + ++ + ++ E +L I+ F+ F+ Sbjct: 89 FYLWLDQNGQHLLEHIRTTKDLPNEDDLNQAIEAFKKTFVV 129 >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467 Score = 25.7 bits (55), Expect = 6.0 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 42 KLLRHFTHAELKEIVAS--AKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILE 99 L F +++++ + A+ P + E Q L + ++ +++ Sbjct: 386 ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQ 445 Query: 100 EGLEQNELEKLLN 112 + + E LL Sbjct: 446 QYADDKEKVALLK 458 >d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia coli [TaxId: 562]} Length = 431 Score = 25.4 bits (55), Expect = 6.4 Identities = 8/34 (23%), Positives = 17/34 (50%) Query: 232 TSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSI 265 ++QE+SKE F + + L++H ++ Sbjct: 387 MTVQELSKEGFSALASTIETLAAAERLTAHKNAV 420 >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Length = 428 Score = 25.2 bits (54), Expect = 7.8 Identities = 8/52 (15%), Positives = 17/52 (32%) Query: 44 LRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIE 95 + + SA + EI E LE+ + + + + +E Sbjct: 46 MLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLE 97 >d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880 Score = 25.1 bits (54), Expect = 8.9 Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 296 NRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNP 343 ++ ++ L++ IA E R + Q T++I P Sbjct: 146 HKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRP 193 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.312 0.130 0.346 Gapped Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,177,732 Number of extensions: 54822 Number of successful extensions: 242 Number of sequences better than 10.0: 1 Number of HSP's gapped: 240 Number of HSP's successfully gapped: 48 Length of query: 345 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 259 Effective length of database: 1,226,816 Effective search space: 317745344 Effective search space used: 317745344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 53 (25.0 bits)