RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein
G [Candidatus Liberibacter asiaticus str. psy62]
(345 letters)
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 92.5 bits (229), Expect = 4e-20
Identities = 53/213 (24%), Positives = 106/213 (49%), Gaps = 4/213 (1%)
Query: 132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQK 191
DP + +FL EHPQT A VLS + P + A +L P ++ +++KR L + SP + K
Sbjct: 1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVK 60
Query: 192 TIEKCIVEM---LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPK 248
IE+ + + + G + A ++N L++ K++ L + + E D++R +
Sbjct: 61 EIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRR 120
Query: 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVL 308
+F+F+D++ L + +V + L AL G S E + I +S R ++++ +
Sbjct: 121 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEY 180
Query: 309 NDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341
+ ++V A++ I+ L + +I ++
Sbjct: 181 M-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 212
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 101
Score = 69.4 bits (170), Expect = 5e-13
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 250 FLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLN 309
F+F+D++ L + +V + L AL G S E + I +S R ++++ +
Sbjct: 2 FVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELE-Y 60
Query: 310 DSSIAPREVAMARRSIVQEAISLLKTNKIELS 341
+ ++V A++ I+ L + +I ++
Sbjct: 61 MGPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 92
>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree
(Hevea brasiliensis) [TaxId: 3981]}
Length = 256
Score = 31.4 bits (69), Expect = 0.12
Identities = 4/40 (10%), Positives = 16/40 (40%)
Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
+ ++ ++ ++ L +E+ +I+ E +
Sbjct: 216 WQIENYKPDKVYKVEGGDHKLQLTKTKEIAEILQEVADTY 255
>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 326
Score = 30.4 bits (67), Expect = 0.21
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 50 AELKEIVASAKLLPEISPEELEDI 73
+L E + + ++LP++S + +I
Sbjct: 293 EQLMENIGAIQVLPKLSSSIVHEI 316
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 30.3 bits (66), Expect = 0.24
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77
L A L EI LP L ++I
Sbjct: 257 HLAGLIPTARLAEIPGMGHALPSSVHGPLAEVILAH 292
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 29.5 bits (65), Expect = 0.41
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 54 EIVASAKLLPEISPEELEDIIDEFESQFI 82
E+V + + P ++ EE++ ++D I
Sbjct: 15 ELVEAERHTPSLAAEEVQALLDARAEAVI 43
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Escherichia coli [TaxId: 562]}
Length = 228
Score = 29.3 bits (65), Expect = 0.46
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 36 EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQ 80
E ++S LL +AE + + L P+ ++ E ++ F ++
Sbjct: 186 EHRISNFLLWQIAYAE---LYFTDVLWPDFDEQDFEGALNAFANR 227
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 28.6 bits (62), Expect = 0.71
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 42 KLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77
KLL + A L +E ++ +F
Sbjct: 244 KLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDF 279
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {SARS coronavirus [TaxId:
227859]}
Length = 300
Score = 28.3 bits (63), Expect = 0.90
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289
D LI S+H + N+ L V+G ++ ++T N
Sbjct: 55 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNP 95
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Micrococcus luteus [TaxId: 1270]}
Length = 229
Score = 28.2 bits (62), Expect = 0.91
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 36 EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFES 79
E+++S L+ +++E V + P+ + E L I +++
Sbjct: 188 EERLSNFLIWQCSYSEF---VFIDEFWPDFNEESLAQCISIYQN 228
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 27.5 bits (60), Expect = 1.6
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 123 SIWDHLKETDPGVIAD 138
S WDH P I D
Sbjct: 40 STWDHFCHNFPEWIVD 55
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Human coronavirus 229E
[TaxId: 11137]}
Length = 300
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289
+ + H+ SI+ L V+G +HG + N
Sbjct: 55 HEYSIMRLHNFSIISGTAFLGVVGATMHGVTLKIKVSQTNM 95
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 27.5 bits (61), Expect = 1.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 244 KVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILH 292
K RP + F + + +H L+ +F SL G +H +I + H
Sbjct: 159 KFRPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIH-VAIPE-SRGQH 205
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 27.2 bits (60), Expect = 1.9
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 9 SFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHF--THAELKEIVASAKLLPEIS 66
S + ++++ + + + + + L H H L + + + E S
Sbjct: 55 SPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEES 114
Query: 67 PEELEDIIDEFESQFIA 83
+L++I+ F + F A
Sbjct: 115 DAKLKEIVTNFLAGFEA 131
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Transmissible
gastroenteritis virus [TaxId: 11149]}
Length = 299
Score = 27.5 bits (61), Expect = 1.9
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 253 DDLITLSSHDLSIVFNNISLEVLGKALHGT----SIETQNA 289
+++ ++ H+ S+ NN+ L V+ G + N
Sbjct: 55 NEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNP 95
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 129
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 46 HFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
E +EI++S K E + L++ I E +F
Sbjct: 94 KTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 129
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.0 bits (58), Expect = 2.2
Identities = 12/66 (18%), Positives = 22/66 (33%)
Query: 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184
+ IA ++ L+ P S ++ N I R+ N P
Sbjct: 135 HRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194
Query: 185 ISPYIQ 190
+ PY++
Sbjct: 195 VRPYVK 200
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.8 bits (59), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 50 AELKEIVASAKLLPEISPEELEDIIDEF 77
AEL I+ SA L E+ EELE + ++F
Sbjct: 457 AELLRILGSADRLMEVIREELELVREQF 484
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 26.7 bits (58), Expect = 2.9
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 123 SIWDHLKETDPGVIAD 138
SIWD P I D
Sbjct: 46 SIWDTFTHKYPEKIKD 61
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 26.8 bits (59), Expect = 3.0
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 217 NLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275
NL+N + + D + + + K P+ +D I ++ +++ + NIS EVL
Sbjct: 261 NLLNHFTQAEGDLFIGD----HYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVL 315
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 26.6 bits (58), Expect = 3.4
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKL---LNKSDIS 117
L ++S +++E+ E + + + + + + E E L +++
Sbjct: 1 LRWDLSAQQIEERTRE---------LIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVT 51
Query: 118 QENNNSIWDHLKETDP 133
+I D + P
Sbjct: 52 YTVQRNILDFPQHVSP 67
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 26.4 bits (57), Expect = 3.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 50 AELKEIVASAKL-LPEISPEELEDIIDE 76
A K V +AK + +SP++ ++ E
Sbjct: 9 ATFKAQVKAAKADMVMLSPKDAYKLLQE 36
>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 254
Score = 26.4 bits (58), Expect = 4.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 32 LLAMEKQVSGKLLRHFTHAELKEIVASAKL-----LPEISPEELEDIIDEFESQFI 82
++ ME+ +G L F H L+E I EEL I FE++
Sbjct: 72 VMNMEESNNGSLSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLIT--FETEVY 125
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 26.1 bits (57), Expect = 4.6
Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Query: 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNL 182
S+ + L+E D + + L + HPQ + + VL P A+++ ++
Sbjct: 2 SLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLS-HLSP 60
Query: 183 PKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAF 242
+ + Y++ + E+L + + + + + + +L L ++
Sbjct: 61 EEQAEYLKTLPPWRLREILEELSLDDLA---DALQAVRKEDPAYFQRLKDLLDPRTRAEV 117
Query: 243 DKV 245
+ +
Sbjct: 118 EAL 120
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 130
Score = 25.8 bits (56), Expect = 4.9
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 51 ELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKL 110
+ +++ +L + E + + + + K + + + E NE K
Sbjct: 14 KNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDNENMKD 73
Query: 111 LNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPP 157
+++ + D L E D L+ A LS++
Sbjct: 74 Y----LAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSS 116
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 26.0 bits (57), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 67 PEELEDIIDEFESQFIAGIG-LTENSKNIESILEEGLEQN 105
P+EL I+ FE F L +K+ S LE+GL +
Sbjct: 3 PKELMQQIENFEKIFTVPTETLQAVTKHFISELEKGLSKK 42
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 26.0 bits (57), Expect = 5.4
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 44 LRHFTHAELKEIVASAKLLPEISPE-ELEDIIDEFESQFIA 83
+ + ++ + ++ E +L I+ F+ F+
Sbjct: 89 FYLWLDQNGQHLLEHIRTTKDLPNEDDLNQAIEAFKKTFVV 129
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 25.7 bits (55), Expect = 6.0
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 42 KLLRHFTHAELKEIVAS--AKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILE 99
L F +++++ + A+ P + E Q L + ++ +++
Sbjct: 386 ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQ 445
Query: 100 EGLEQNELEKLLN 112
+ + E LL
Sbjct: 446 QYADDKEKVALLK 458
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 25.4 bits (55), Expect = 6.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 232 TSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSI 265
++QE+SKE F + + L++H ++
Sbjct: 387 MTVQELSKEGFSALASTIETLAAAERLTAHKNAV 420
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
[TaxId: 562]}
Length = 428
Score = 25.2 bits (54), Expect = 7.8
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 44 LRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIE 95
+ + SA + EI E LE+ + + + + +E
Sbjct: 46 MLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLE 97
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 25.1 bits (54), Expect = 8.9
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 296 NRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNP 343
++ ++ L++ IA E R + Q T++I P
Sbjct: 146 HKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRP 193
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.346
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,177,732
Number of extensions: 54822
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 48
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)