BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] (345 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] Length = 345 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/345 (100%), Positives = 345/345 (100%) Query: 1 MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK 60 MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK Sbjct: 1 MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK 60 Query: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN 120 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN Sbjct: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN 120 Query: 121 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV 180 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV Sbjct: 121 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV 180 Query: 181 NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE 240 NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE Sbjct: 181 NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE 240 Query: 241 AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK 300 AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK Sbjct: 241 AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK 300 Query: 301 IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK 345 IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK Sbjct: 301 IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK 345 >gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 248 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 157 PSIGASVLLRFPNKIHADIMKRTVNLP 183 P G V+ R+P D +KR + LP Sbjct: 85 PRRGDVVVFRYPKDPSIDYVKRVIGLP 111 >gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 611 Score = 25.0 bits (53), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 243 DKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275 D R L+D++ L HD S+++N+ +E L Sbjct: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL 524 >gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 362 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Query: 42 KLLRHFTHAELKEIVASAKLLP---EISP----EELEDIIDEFESQFIAGI 85 +LL H +E + + K +P +ISP EEL+DI E S + GI Sbjct: 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240 >gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 11 KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70 +N+ +++ +S + + + +A+E QV G + H+T +L + +K+ P L Sbjct: 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPLSL 62 Query: 71 EDIIDEFES 79 ++ +++ S Sbjct: 63 DEKKEQYYS 71 >gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 218 Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 13/16 (81%) Query: 64 EISPEELEDIIDEFES 79 +++PE LE+IID F + Sbjct: 159 DLTPERLEEIIDAFST 174 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 23.1 bits (48), Expect = 7.0, Method: Compositional matrix adjust. Identities = 7/24 (29%), Positives = 18/24 (75%) Query: 122 NSIWDHLKETDPGVIADFLSKEHP 145 N + D+L +T PG++++ + +++P Sbjct: 795 NMLQDYLLDTLPGLVSEEIKRQYP 818 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 23.1 bits (48), Expect = 7.2, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 272 LEVLGKALHGTSIETQNAILHCLSNRQRKII 302 LE+L K +H + ILH LS R KI+ Sbjct: 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIV 106 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.312 0.130 0.346 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,502 Number of Sequences: 1233 Number of extensions: 8659 Number of successful extensions: 25 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 12 length of query: 345 length of database: 328,796 effective HSP length: 75 effective length of query: 270 effective length of database: 236,321 effective search space: 63806670 effective search space used: 63806670 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 39 (19.6 bits)