BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein
G [Candidatus Liberibacter asiaticus str. psy62]
(345 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 345
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK 60
MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK
Sbjct: 1 MNKTTDTVSFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAK 60
Query: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN 120
LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN
Sbjct: 61 LLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQEN 120
Query: 121 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV 180
NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV
Sbjct: 121 NNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTV 180
Query: 181 NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE 240
NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE
Sbjct: 181 NLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKE 240
Query: 241 AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK 300
AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK
Sbjct: 241 AFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRK 300
Query: 301 IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK 345
IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK
Sbjct: 301 IIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPIK 345
>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 248
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 157 PSIGASVLLRFPNKIHADIMKRTVNLP 183
P G V+ R+P D +KR + LP
Sbjct: 85 PRRGDVVVFRYPKDPSIDYVKRVIGLP 111
>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 611
Score = 25.0 bits (53), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 243 DKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275
D R L+D++ L HD S+++N+ +E L
Sbjct: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL 524
>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 362
Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 42 KLLRHFTHAELKEIVASAKLLP---EISP----EELEDIIDEFESQFIAGI 85
+LL H +E + + K +P +ISP EEL+DI E S + GI
Sbjct: 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGI 240
>gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 316
Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 11 KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70
+N+ +++ +S + + + +A+E QV G + H+T +L + +K+ P L
Sbjct: 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPLSL 62
Query: 71 EDIIDEFES 79
++ +++ S
Sbjct: 63 DEKKEQYYS 71
>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 218
Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 64 EISPEELEDIIDEFES 79
+++PE LE+IID F +
Sbjct: 159 DLTPERLEEIIDAFST 174
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 23.1 bits (48), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 122 NSIWDHLKETDPGVIADFLSKEHP 145
N + D+L +T PG++++ + +++P
Sbjct: 795 NMLQDYLLDTLPGLVSEEIKRQYP 818
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 23.1 bits (48), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 272 LEVLGKALHGTSIETQNAILHCLSNRQRKII 302
LE+L K +H + ILH LS R KI+
Sbjct: 76 LEILEKIVHPMVRMHEKKILHDLSCRGEKIV 106
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.312 0.130 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,502
Number of Sequences: 1233
Number of extensions: 8659
Number of successful extensions: 25
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 12
length of query: 345
length of database: 328,796
effective HSP length: 75
effective length of query: 270
effective length of database: 236,321
effective search space: 63806670
effective search space used: 63806670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 39 (19.6 bits)