HHsearch alignment for GI: 254780690 and conserved domain: COG2257

>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].

Probab=99.72  E-value=4.3e-17  Score=155.86  Aligned_cols=80  Identities=36%  Similarity=0.567  Sum_probs=76.2

Q ss_pred             CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             53078889768888888899807658999999999973997886889999999728898948989999999999999730
Q gi|254780690|r  273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       273 TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~l  352 (354)
T Consensus         7 ~r~AvAl~Yd~~~~~AP~vvA~G~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~-lelg~~IPeelY~vVAEifafi~~~   85 (92)
T COG2257           7 IRKAVALAYDEGKDKAPKVVASGKGEIAEKIIEKAKEHGVPIQEDPLLVELLLK-LELGDEIPEELYEVVAEIFAFIYEV   85 (92)
T ss_pred             CCHHEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             441113322467888888776264289999999999849985118899999984-6456648999999999999999999


Q ss_pred             C
Q ss_conf             2
Q gi|254780690|r  353 K  353 (354)
Q Consensus       353 k  353 (354)
T Consensus        86 ~   86 (92)
T COG2257          86 D   86 (92)
T ss_pred             H
T ss_conf             7