HHsearch alignment for GI: 254780690 and conserved domain: PRK06298
>PRK06298 type III secretion system protein; Validated.
Probab=100.00 E-value=0 Score=862.53 Aligned_cols=344 Identities=23% Similarity=0.316 Sum_probs=325.2
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 77686658787999998578751335999999999999999999999999999999997200012104979899999999
Q gi|254780690|r 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 (354)
Q Consensus 8 ~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T Consensus 2 gEKTE~PT~kKL~dARekGqV~kS~El~~a~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (360)
T PRK06298 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQAPTN--HDPGVTLYYLKNC 79 (360)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
T ss_conf 98899998578999996699985675999999999999999999999999999999999735554--5547899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998877687853210137121377910169343033201266799999999999999999999998
Q gi|254780690|r 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 (354)
Q Consensus 88 ~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~ 167 (354)
T Consensus 80 ~~~~~~~~lP~~~~~~~~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~~~~v~~~~l~ 159 (360)
T PRK06298 80 LMLILTASLPLLGAVAFVGVIIGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLK 159 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986455336101578742136878788860487899999999999999999999999
Q ss_pred HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 32156897840897999999999999999999999999999766799999998406998999999754489989999999
Q gi|254780690|r 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 (354)
Q Consensus 168 ~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r 247 (354)
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvKdE~Ke~EGdP~vK~r~R 239 (360)
T PRK06298 160 NRVPLIIETAGVPPIVTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 (360)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999998825899999999999999999999999999999999999999998707999999989886639999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHH
Q ss_conf 99999999889860776869987355307888976888888889980765899999999997399788688999999972
Q gi|254780690|r 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 (354)
Q Consensus 248 ~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~ 327 (354)
T Consensus 240 ~~~re~a~~~m~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven~pLARaLy~~ 319 (360)
T PRK06298 240 QIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGIPIMRNVPLAHQLLDE 319 (360)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 99999997178726999988998886178886666899999988885485999999999998799887176999999982
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 88989489899999999999997302
Q gi|254780690|r 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 328 ~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 320 ~~vg~~IP~~ly~aVA~iL~~v~~l~ 345 (360)
T PRK06298 320 GKELKFIPESTYEAIGEILLYITSLN 345 (360)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 67888489999999999999999974