HHsearch alignment for GI: 254780690 and conserved domain: PRK06298
>PRK06298 type III secretion system protein; Validated.
Probab=97.15 E-value=0.04 Score=37.32 Aligned_cols=220 Identities=12% Similarity=0.100 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999998877687---853210137121377--91016934303320126679999999999
Q gi|254780690|r 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVK 154 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~---l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllK 154 (354)
T Consensus 76 ~~~~~~~~~~~~lP~~~~~~~~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriF---S~k~LvEl--~KsllKv~~~ 150 (360)
T PRK06298 76 LKNCLMLILTASLPLLGAVAFVGVIIGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKF---KVKTLIEL--LKSILKISGA 150 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHH---CHHHHHHH--HHHHHHHHHH
T ss_conf 999999999999999999999999999986455336101578742136878788860---48789999--9999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHH
Q ss_conf 999999999999832156897840897999999999999999999999999999766799999998-4069989999997
Q gi|254780690|r 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEI 233 (354)
Q Consensus 155 v~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~ 233 (354)
T Consensus 151 ~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvKdE~Ke~E 229 (360)
T PRK06298 151 ALILYIVLKNRVP-LIIETAGVPPIVTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTE 229 (360)
T ss_pred HHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999999999999-999882589999999999999999999999999999999999999999870799999998988663
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHH-C----C--------------CCCEEEE-CCCCEEEEEEECCCCCCCCEEEE
Q ss_conf 5448998999999999999999889860-7----7--------------6869987-35530788897688888888998
Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA-T----S--------------RATIIIT-NPTHYALALRYIQTENDAPVLVA 293 (354)
Q Consensus 234 K~~EGdP~iK~~~r~~~re~~~~~~~~~-V----~--------------~A~vvit-NPTH~AVAL~Y~~~~~~aP~vva 293 (354)
T Consensus 230 GdP~vK~r~R~~~re~a~~~m~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven 309 (360)
T PRK06298 230 GNPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGIPIMRN 309 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECC
T ss_conf 99999999999999999717872699998899888617888666689999998888548599999999999879988717
Q ss_pred ECCCHHHHHHHHHHH
Q ss_conf 076589999999999
Q gi|254780690|r 294 KGQNLIAKKMRKIAY 308 (354)
Q Consensus 294 KG~~~~A~~Ir~~A~ 308 (354)
T Consensus 310 ~---pLARaLy~~~~ 321 (360)
T PRK06298 310 V---PLAHQLLDEGK 321 (360)
T ss_pred H---HHHHHHHHHCC
T ss_conf 6---99999998267