HHsearch alignment for GI: 254780690 and conserved domain: PRK08156
>PRK08156 surface presentation of antigens protein SpaS; Validated.
Probab=100.00 E-value=0 Score=852.96 Aligned_cols=337 Identities=23% Similarity=0.319 Sum_probs=311.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 76866587879999985787513359999999999999999999999999999999972000121049798999999999
Q gi|254780690|r 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 (354)
Q Consensus 9 eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T Consensus 3 EKTE~PT~kKL~kARekGqVarSkEl~~a~~ll~g~l~l~~~~~--~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~ 74 (367)
T PRK08156 3 NKTEKPTKKKLRDAAKKGQSFKSKDLTTAVVILGGIAYLVSFGS--LNEFMGIYRRILADNFDI---SM---GDYFFAVA 74 (367)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCC---CH---HHHHHHHH
T ss_conf 88999985789999967999874879999999999999999999--999999999998174324---69---99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988776878532101371213779101693430332012667999999999999999999999983
Q gi|254780690|r 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 (354)
Q Consensus 89 ~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~ 168 (354)
T Consensus 75 ~~~~~~~~P~~~~~~l~~i~a~l~Q~G~~fs~k~l~Pk~~kLNPi~GlKRiFS~k~LvEl~KsllK~~~l~~~~~~~~~~ 154 (367)
T PRK08156 75 ILFLKILIPFLLLCLLAGALPSLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKK 154 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999721764160203653643786441001135768999999999999999999999998
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 21568978408979999999999999999999999999997667999999984069989999997544899899999999
Q gi|254780690|r 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 (354)
Q Consensus 169 ~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~ 248 (354)
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~iD~~~Qr~~~~k~LrMSkqEVKdE~Ke~EGdP~vK~r~R~ 234 (367)
T PRK08156 155 YKKEIFSQLNGNIVGLIVIWRELLVALVLTFLACALIVLILDAIAEYFLYMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 (367)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999998507999999999999999999999999999999999999999997489989999998866399999999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
Q ss_conf 99999998898607768699873553078889768888888899807658999999999973997886889999999728
Q gi|254780690|r 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 (354)
Q Consensus 249 ~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~ 328 (354)
T Consensus 235 ~~re~a~~~m~~~Vp~AdVVItNPTH~AVALkY~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPive~~pLARaLy~~~ 314 (367)
T PRK08156 235 AHQEILSEQVKSDIENSRLIVANPTHIAIGIYFNPDLAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARSLYKTH 314 (367)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCHHHEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHC
T ss_conf 99999986797348999989988562204655468889999888746859999999999986998862769999999726
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8989489899999999999997302
Q gi|254780690|r 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 329 ~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 315 ~~~~~Ip~~ly~aVA~vl~~v~~l~ 339 (367)
T PRK08156 315 RRYSFVSLEDIDEVLRLLIWLEEVE 339 (367)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7888689999999999999999999