HHsearch alignment for GI: 254780690 and conserved domain: PRK09108
>PRK09108 type III secretion system protein HrcU; Validated.
Probab=100.00 E-value=0 Score=857.32 Aligned_cols=343 Identities=26% Similarity=0.384 Sum_probs=325.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 77686658787999998578751335999999999999999999999999999999997200012104979899999999
Q gi|254780690|r 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 (354)
Q Consensus 8 ~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T Consensus 3 dEKTE~PT~kRl~dARekGqV~kS~El~~~~~L~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 80 (354)
T PRK09108 3 DEKTEEPTEKKLKDARRDGEVAKSPDLTAAAVLLAALLVLTAAGSYLTDHLRALVRTALDFVSG-E-RSLQALLAALHHI 80 (354)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHH
T ss_conf 8889999857899999769997478699999999999999999999999999999999862245-4-6789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998877687853210137121377910169343033201266799999999999999999999998
Q gi|254780690|r 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 (354)
Q Consensus 88 ~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~ 167 (354)
T Consensus 81 ~~~~~~~~lp~~~~~~~~~i~~~~~Q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~l~~v~~~~~~ 160 (354)
T PRK09108 81 GAQALLLMLPFVAAALVAGILGQAPQTGLNISLKPVMPKFDSLNPAAGLKKIFSLRSLIELVKMIVKAVVIACVLWKTIT 160 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999840365405141367602058655442444688899999999999999999999999
Q ss_pred HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 32156897840897999999999999999999999999999766799999998406998999999754489989999999
Q gi|254780690|r 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 (354)
Q Consensus 168 ~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r 247 (354)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvK~E~K~~EGdP~vK~r~R 240 (354)
T PRK09108 161 SLFPLIVGAAYESPPQLAQILWTVLMKLLAVAALVFLVVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHLKGERK 240 (354)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999850699999999999999999999999999999999999999999738998999999886649989999999
Q ss_pred HHHHHHHHH-HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 999999998-8986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r 248 SIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 248 ~~~re~~~~-~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
T Consensus 241 ~~~re~a~~~~~~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPiven~pLAR~Ly~ 320 (354)
T PRK09108 241 RLARELATFAPPRQRVAKANVVVVNPTHYAVALRYAPDEHPLPRVVAKGVDDGALALRRHAHALGIPIVANPPVARALYR 320 (354)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHC
T ss_conf 99999997443653578784899876604678675788898898112168399999999999869978718899999970
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 288989489899999999999997302
Q gi|254780690|r 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 327 ~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 321 -v~vg~~IP~~~y~aVA~ila~v~~l~ 346 (354)
T PRK09108 321 -VELDEPIPEELFETVAAILRWVDELG 346 (354)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -76999689999999999999999985