HHsearch alignment for GI: 254780690 and conserved domain: PRK09108

>PRK09108 type III secretion system protein HrcU; Validated.
Probab=100.00  E-value=0  Score=857.32  Aligned_cols=343  Identities=26%  Similarity=0.384  Sum_probs=325.9

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             77686658787999998578751335999999999999999999999999999999997200012104979899999999
Q gi|254780690|r    8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL   87 (354)
Q Consensus         8 ~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T Consensus         3 dEKTE~PT~kRl~dARekGqV~kS~El~~~~~L~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~   80 (354)
T PRK09108          3 DEKTEEPTEKKLKDARRDGEVAKSPDLTAAAVLLAALLVLTAAGSYLTDHLRALVRTALDFVSG-E-RSLQALLAALHHI   80 (354)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHH
T ss_conf             8889999857899999769997478699999999999999999999999999999999862245-4-6789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998877687853210137121377910169343033201266799999999999999999999998
Q gi|254780690|r   88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT  167 (354)
Q Consensus        88 ~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~  167 (354)
T Consensus        81 ~~~~~~~~lp~~~~~~~~~i~~~~~Q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~l~~v~~~~~~  160 (354)
T PRK09108         81 GAQALLLMLPFVAAALVAGILGQAPQTGLNISLKPVMPKFDSLNPAAGLKKIFSLRSLIELVKMIVKAVVIACVLWKTIT  160 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999840365405141367602058655442444688899999999999999999999999


Q ss_pred             HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             32156897840897999999999999999999999999999766799999998406998999999754489989999999
Q gi|254780690|r  168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK  247 (354)
Q Consensus       168 ~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r  247 (354)
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvK~E~K~~EGdP~vK~r~R  240 (354)
T PRK09108        161 SLFPLIVGAAYESPPQLAQILWTVLMKLLAVAALVFLVVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHLKGERK  240 (354)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999850699999999999999999999999999999999999999999738998999999886649989999999


Q ss_pred             HHHHHHHHH-HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf             999999998-8986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r  248 SIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK  326 (354)
Q Consensus       248 ~~~re~~~~-~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~  326 (354)
T Consensus       241 ~~~re~a~~~~~~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPiven~pLAR~Ly~  320 (354)
T PRK09108        241 RLARELATFAPPRQRVAKANVVVVNPTHYAVALRYAPDEHPLPRVVAKGVDDGALALRRHAHALGIPIVANPPVARALYR  320 (354)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHC
T ss_conf             99999997443653578784899876604678675788898898112168399999999999869978718899999970


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             288989489899999999999997302
Q gi|254780690|r  327 QVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       327 ~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
T Consensus       321 -v~vg~~IP~~~y~aVA~ila~v~~l~  346 (354)
T PRK09108        321 -VELDEPIPEELFETVAAILRWVDELG  346 (354)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -76999689999999999999999985