HHsearch alignment for GI: 254780690 and conserved domain: PRK12468
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00 E-value=0 Score=874.12 Aligned_cols=351 Identities=28% Similarity=0.442 Sum_probs=327.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99876787768665878799999857875133599999999999999999999999999999999720001210497989
Q gi|254780690|r 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80 (354)
Q Consensus 1 MAe~d~~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T Consensus 1 MAed~-dqEKTE~PT~kKL~dARekGqV~kS~El~~~~~L~~~~~~l~~~~~~~~~~l~~~~~~~l~-~~~~~~~~~~~~ 78 (383)
T PRK12468 1 MAEDS-DQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLH-FDHSMVSNDKQM 78 (383)
T ss_pred CCCCC-CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHCCCHHHH
T ss_conf 99999-9999999986789999966999857759999999999999999999999999999998833-333420377999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999887768785321013712137791016934303320126679999999999999999
Q gi|254780690|r 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~ 160 (354)
T Consensus 79 ~~~~~~~l~~~~~~~lpi~~~~~i~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKRiFS~k~LvEl~KsllK~~li~~ 158 (383)
T PRK12468 79 LRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGW 158 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999997104031443368655435864441111257789999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
Q ss_conf 99999983215689784089799999999999999999999999999976679999999840699899999975448998
Q gi|254780690|r 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 (354)
Q Consensus 161 v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP 240 (354)
T Consensus 159 v~~~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~l~~ia~iD~~~Qr~~~~k~LkMSKqEVKdE~Ke~EGdP 238 (383)
T PRK12468 159 VTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 (383)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf 99999999899999986248999999999999999999999999999999999999999874899999999988663999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 99999999999999988986077686998735530788897688888888998076589999999999739978868899
Q gi|254780690|r 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 241 ~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
T Consensus 239 ~iK~r~R~~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPiven~pL 318 (383)
T PRK12468 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPL 318 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHH
T ss_conf 99999999999999878872689898899785538742353788899998988368499999999999869988637799
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999997288989489899999999999997302
Q gi|254780690|r 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 321 AR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 319 AR~Ly~~~evg~~IP~ely~aVA~vLa~Vy~l~ 351 (383)
T PRK12468 319 ARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 (383)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999987177899789999999999999999999