HHsearch alignment for GI: 254780690 and conserved domain: PRK12468

>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00  E-value=0  Score=874.12  Aligned_cols=351  Identities=28%  Similarity=0.442  Sum_probs=327.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             99876787768665878799999857875133599999999999999999999999999999999720001210497989
Q gi|254780690|r    1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI   80 (354)
Q Consensus         1 MAe~d~~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
T Consensus         1 MAed~-dqEKTE~PT~kKL~dARekGqV~kS~El~~~~~L~~~~~~l~~~~~~~~~~l~~~~~~~l~-~~~~~~~~~~~~   78 (383)
T PRK12468          1 MAEDS-DQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLH-FDHSMVSNDKQM   78 (383)
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHCCCHHHH
T ss_conf             99999-9999999986789999966999857759999999999999999999999999999998833-333420377999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999887768785321013712137791016934303320126679999999999999999
Q gi|254780690|r   81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~  160 (354)
T Consensus        79 ~~~~~~~l~~~~~~~lpi~~~~~i~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKRiFS~k~LvEl~KsllK~~li~~  158 (383)
T PRK12468         79 LRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGW  158 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999997104031443368655435864441111257789999999999999999


Q ss_pred             HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
Q ss_conf             99999983215689784089799999999999999999999999999976679999999840699899999975448998
Q gi|254780690|r  161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP  240 (354)
Q Consensus       161 v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP  240 (354)
T Consensus       159 v~~~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~l~~ia~iD~~~Qr~~~~k~LkMSKqEVKdE~Ke~EGdP  238 (383)
T PRK12468        159 VTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP  238 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf             99999999899999986248999999999999999999999999999999999999999874899999999988663999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf             99999999999999988986077686998735530788897688888888998076589999999999739978868899
Q gi|254780690|r  241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL  320 (354)
Q Consensus       241 ~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L  320 (354)
T Consensus       239 ~iK~r~R~~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPiven~pL  318 (383)
T PRK12468        239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPL  318 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHH
T ss_conf             99999999999999878872689898899785538742353788899998988368499999999999869988637799


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999997288989489899999999999997302
Q gi|254780690|r  321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       321 AR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
T Consensus       319 AR~Ly~~~evg~~IP~ely~aVA~vLa~Vy~l~  351 (383)
T PRK12468        319 ARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK  351 (383)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999987177899789999999999999999999