HHsearch alignment for GI: 254780690 and conserved domain: PRK12468
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=97.58 E-value=0.014 Score=40.93 Aligned_cols=235 Identities=16% Similarity=0.137 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999988776878--5-3210137121377--91016934303320126679999999999
Q gi|254780690|r 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--I-QRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVK 154 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l--~-q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllK 154 (354)
T Consensus 82 ~~~~l~~~~~~~lpi~~~~~i~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKRiFS~k~LvEl-----~KsllK~~li 156 (383)
T PRK12468 82 IGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAEL-----LKAILKATLV 156 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHCCCCCCCHHHHHHH-----HHHHHHHHHH
T ss_conf 99999999999999999999999999997104031443368655435864441111257789999-----9999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHH
Q ss_conf 999999999999832156897840897999999999999999999999999999766799999998-4069989999997
Q gi|254780690|r 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEI 233 (354)
Q Consensus 155 v~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~ 233 (354)
T Consensus 157 ~~v~~~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~l~l~~ia~iD~~~Qr~~~~k~LkMSKqEVKdE~Ke~E 235 (383)
T PRK12468 157 GWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCG-LVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQE 235 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 99999999998999999862489999999999999999-99999999999999999999999874899999999988663
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------CCCCCEEEEC-CCCEEEEEEECCCCCCCCEEEE
Q ss_conf 5448998999999999999999889860-------------------7768699873-5530788897688888888998
Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA-------------------TSRATIIITN-PTHYALALRYIQTENDAPVLVA 293 (354)
Q Consensus 234 K~~EGdP~iK~~~r~~~re~~~~~~~~~-------------------V~~A~vvitN-PTH~AVAL~Y~~~~~~aP~vva 293 (354)
T Consensus 236 GdP~iK~r~R~~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPiven 315 (383)
T PRK12468 236 GDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEA 315 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECC
T ss_conf 99999999999999999878872689898899785538742353788899998988368499999999999869988637
Q ss_pred ECCCHHHHHHHHHHH-HCCCCEEECHHHHHH
Q ss_conf 076589999999999-739978868899999
Q gi|254780690|r 294 KGQNLIAKKMRKIAY-EHNIPIFEEPSLARS 323 (354)
Q Consensus 294 KG~~~~A~~Ir~~A~-~~~Vpive~~~LAR~ 323 (354)
T Consensus 316 ~---pLAR~Ly~~~evg~~IP~ely~aVA~v 343 (383)
T PRK12468 316 P---PLARALFRHSEVGQHIPATLYAAVAEV 343 (383)
T ss_pred H---HHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 7---999999871778997899999999999