HHsearch alignment for GI: 254780690 and conserved domain: PRK12721
>PRK12721 secretion system apparatus protein SsaU; Reviewed.
Probab=100.00 E-value=0 Score=857.69 Aligned_cols=342 Identities=23% Similarity=0.305 Sum_probs=321.9
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 76866587879999985787513359999999999999999999999999999999972000121049798999999999
Q gi|254780690|r 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 (354)
Q Consensus 9 eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T Consensus 3 EKTE~PT~kKL~dARekGqV~kS~El~~a~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 79 (349)
T PRK12721 3 EKTEKPTPKKLRDARKKGQVVKSIEITSGVQLIALLLYFHLFGESLIEILIALINFTIQLLNQPF---SYALTQISGALL 79 (349)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH
T ss_conf 88999985789999977999766879999999999999999999999999999999998724705---679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988776878532101371213779101693430332012667999999999999999999999983
Q gi|254780690|r 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 (354)
Q Consensus 89 ~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~ 168 (354)
T Consensus 80 ~~~~~~~~p~~~~~~~~~i~~~~~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvEl~KsllKv~lv~~i~~~~l~~ 159 (349)
T PRK12721 80 ESLMSILLFLGAGVIVATVGSVILQVGPVLATKAIGFKGEKINPVSNAKQIFSLHSVFELCKSLLKVIVLSLIFAFLLYY 159 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999730635071414876654587453554337767999999999999999999999999
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 21568978408979999999999999999999999999997667999999984069989999997544899899999999
Q gi|254780690|r 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 (354)
Q Consensus 169 ~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~ 248 (354)
T Consensus 160 ~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~llviai~D~~~Qr~~~~k~LkMSKqEVKdE~K~~EGdP~iK~r~R~ 239 (349)
T PRK12721 160 YAPTFRALPYCGSACALPVVSTLIKWLWGGVIAFYLVFGILDYAFQRYKIMKQLKMSKDDVKQEHKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999987547999999999999999999999999999999999999999987389999999998866399999999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
Q ss_conf 99999998898607768699873553078889768888888899807658999999999973997886889999999728
Q gi|254780690|r 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 (354)
Q Consensus 249 ~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~ 328 (354)
T Consensus 240 ~~re~a~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~vPiven~~LAR~Ly~~~ 319 (349)
T PRK12721 240 LQSEIQSGSLAQNVKKSTAVVRNPTHIAVCLGYHPGETPLPRVLEKGSDAQALYIVNLAERNGIPVVENIPLARALFFEV 319 (349)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHCC
T ss_conf 99999985787268999889988652764000268899999888853859999999999987997862879999999727
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8989489899999999999997302
Q gi|254780690|r 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 329 ~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 320 ~vg~~IP~~ly~aVA~il~~v~~l~ 344 (349)
T PRK12721 320 ECGDKIPETLFEPVAALLRMAMEID 344 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7899589999999999999999625