HHsearch alignment for GI: 254780690 and conserved domain: PRK12772
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional.
Probab=100.00 E-value=0 Score=887.93 Aligned_cols=346 Identities=31% Similarity=0.495 Sum_probs=334.4
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 (354)
Q Consensus 7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T Consensus 262 sdEKTE~pTpKkl~dARkkGqVakS~el~~a~~ll~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 340 (609)
T PRK12772 262 SDDKTEEATPKKKSDARKKGQVAKSKEVALAITLLACTLVLSALGEYVANTLKETMIYFLNNYLNMNL-NYLNLNSLIIF 340 (609)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 87778999815699898578987727499999999999999999999999999999999853300247-87889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999887768785321013712137791016934303320126679999999999999999999999
Q gi|254780690|r 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 (354)
Q Consensus 87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i 166 (354)
T Consensus 341 ~~~~~~~~~~P~~~~~~~~~i~a~~~Q~G~~fs~~~l~Pk~~klnPi~G~KriFS~~~l~El~KsllK~~~v~~v~y~~~ 420 (609)
T PRK12772 341 TLLRVGKIFLPVALPIMVFGIAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRTVMELLKDLVIITVVGIVGYKFL 420 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986016341530158862644887789998178889999999999999999999999
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 83215689784089799999999999999999999999999976679999999840699899999975448998999999
Q gi|254780690|r 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 (354)
Q Consensus 167 ~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~ 246 (354)
T Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lvia~~D~~~Q~~~~~k~lkMskqEvK~E~K~~EGdP~iK~r~ 500 (609)
T PRK12772 421 QDNYLDILNLGNLRLPYLITGLLSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500 (609)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999874389999999999999999999999999999999999999999976898999998987553999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 99999999988986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 247 r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
T Consensus 501 Rq~~re~a~~rm~~~Vp~AdVVitNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~IreiA~e~~vPiven~pLARaLy~ 580 (609)
T PRK12772 501 KQKQREMAMQRMMQEVPDATVVVTNPTHIAVALKYEKGKDTAPKVVAKGADYVALKIKEIAKENEVPIIENKPLARLIYK 580 (609)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCHHHEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHH
T ss_conf 99999999867873189899898873336404343689999998886178599999999999869987618298999997
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 288989489899999999999997302
Q gi|254780690|r 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 327 ~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 581 ~~eig~~IP~~ly~AVAevLa~Vy~lk 607 (609)
T PRK12772 581 KVEIDSEIPQDMYQAVAEILAIVYKLK 607 (609)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 077899689999999999999999753