HHsearch alignment for GI: 254780690 and conserved domain: PRK12773

>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00  E-value=0  Score=818.29  Aligned_cols=345  Identities=23%  Similarity=0.346  Sum_probs=324.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r    7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH   86 (354)
Q Consensus         7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T Consensus       300 DEGRTEpATpRRrRKAREEGqVpKS~EL~sAvVLLagvi~L~~mG~~~~~r~~~ll~~yl~~~~~~~~~~~~~~~~ll~~  379 (649)
T PRK12773        300 DEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKN  379 (649)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             67888999825689888557988761046899999999999999999999999999999874366632226789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999998877687853210137121377910169343033201-2667999999999999999999999
Q gi|254780690|r   87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITIS  165 (354)
Q Consensus        87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriF-S~k~lvel~KsllKv~li~~v~~~~  165 (354)
T Consensus       380 ~~~~~l~ll~PL~lv~~VaAllaNi~QVGFLFT~KpL~PKf~RINP--GFKriFsSr~sLfeL~KSL~KvvIIg~V~Ys~  457 (649)
T PRK12773        380 ASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYII  457 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHCCC--CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999888841346336777874442397--52220454789999999999999999999999


Q ss_pred             HHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf             98321568978408979999999999999999999999999997667999999984069989999997544899899999
Q gi|254780690|r  166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR  245 (354)
Q Consensus       166 i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~  245 (354)
T Consensus       458 Ir~~l~~il~l~dm~l~~~i~lv~~la~ki~l~~givLl~IAIiDy~yQR~e~~k~LKMSKQEVKdE~Ke~EGDP~IKar  537 (649)
T PRK12773        458 ISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR  537 (649)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             99888877643158867899999999999999999999999999999999999996689889999886426799789999


Q ss_pred             HHHHHHHHHHH-HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf             99999999998-89860776869987355307888976888888889980765899999999997399788688999999
Q gi|254780690|r  246 QKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL  324 (354)
Q Consensus       246 ~r~~~re~~~~-~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~L  324 (354)
T Consensus       538 iRq~qREma~~RrMm~~VPkADVVITNPTH~AVALkYd~~~m~AP~VVAKG~d~~A~rIreiArE~~VPIvEN~PLARAL  617 (649)
T PRK12773        538 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGL  617 (649)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCHHHHHHH
T ss_conf             99999999998889961999998982877156898855888889989863884799999999998599776187999999


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             97288989489899999999999997302
Q gi|254780690|r  325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       325 y~~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
T Consensus       618 Y~~vEIG~eIP~elY~AVAEILA~vy~lr  646 (649)
T PRK12773        618 YEEVELGAEVPQQFYRAIATILSRLESFR  646 (649)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             85588888688999999999999999986