HHsearch alignment for GI: 254780690 and conserved domain: PRK12773
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00 E-value=0 Score=818.29 Aligned_cols=345 Identities=23% Similarity=0.346 Sum_probs=324.1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 (354)
Q Consensus 7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T Consensus 300 DEGRTEpATpRRrRKAREEGqVpKS~EL~sAvVLLagvi~L~~mG~~~~~r~~~ll~~yl~~~~~~~~~~~~~~~~ll~~ 379 (649)
T PRK12773 300 DEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKN 379 (649)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 67888999825689888557988761046899999999999999999999999999999874366632226789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998877687853210137121377910169343033201-2667999999999999999999999
Q gi|254780690|r 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITIS 165 (354)
Q Consensus 87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriF-S~k~lvel~KsllKv~li~~v~~~~ 165 (354)
T Consensus 380 ~~~~~l~ll~PL~lv~~VaAllaNi~QVGFLFT~KpL~PKf~RINP--GFKriFsSr~sLfeL~KSL~KvvIIg~V~Ys~ 457 (649)
T PRK12773 380 ASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYII 457 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHCCC--CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999888841346336777874442397--52220454789999999999999999999999
Q ss_pred HHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98321568978408979999999999999999999999999997667999999984069989999997544899899999
Q gi|254780690|r 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 (354)
Q Consensus 166 i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~ 245 (354)
T Consensus 458 Ir~~l~~il~l~dm~l~~~i~lv~~la~ki~l~~givLl~IAIiDy~yQR~e~~k~LKMSKQEVKdE~Ke~EGDP~IKar 537 (649)
T PRK12773 458 ISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 537 (649)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 99888877643158867899999999999999999999999999999999999996689889999886426799789999
Q ss_pred HHHHHHHHHHH-HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf 99999999998-89860776869987355307888976888888889980765899999999997399788688999999
Q gi|254780690|r 246 QKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 (354)
Q Consensus 246 ~r~~~re~~~~-~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~L 324 (354)
T Consensus 538 iRq~qREma~~RrMm~~VPkADVVITNPTH~AVALkYd~~~m~AP~VVAKG~d~~A~rIreiArE~~VPIvEN~PLARAL 617 (649)
T PRK12773 538 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGL 617 (649)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCHHHHHHH
T ss_conf 99999999998889961999998982877156898855888889989863884799999999998599776187999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 97288989489899999999999997302
Q gi|254780690|r 325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 325 y~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 618 Y~~vEIG~eIP~elY~AVAEILA~vy~lr 646 (649)
T PRK12773 618 YEEVELGAEVPQQFYRAIATILSRLESFR 646 (649)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 85588888688999999999999999986