HHsearch alignment for GI: 254780690 and conserved domain: PRK13109
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00 E-value=0 Score=890.61 Aligned_cols=353 Identities=37% Similarity=0.655 Sum_probs=335.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99876787768665878799999857875133599999999999999999999999999999999720001210497989
Q gi|254780690|r 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80 (354)
Q Consensus 1 MAe~d~~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T Consensus 1 Mae~~d~eeKTE~PT~kRL~~ARekGqVakS~El~~~~~ll~~l~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 80 (358)
T PRK13109 1 MSDDTDKESKTEEPTERKVRDAIEKGDIPVSREASIFASMLGLLIILAFFARGQVAQLTRDLAPLLDDPRGFTLETGADA 80 (358)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99899999989999857899999679996578699999999999999999999999999999999827400242215659
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999887768785321013712137791016934303320126679999999999999999
Q gi|254780690|r 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~ 160 (354)
T Consensus 81 ~~~~~~~~~~~~~~l~P~~~~~~v~~i~~~~~Q~G~~fs~k~l~Pk~~kLNPi~GlKriFS~~~Lvel~KsllK~~~l~~ 160 (358)
T PRK13109 81 ILLLSRVGLAAGRFLLPILLVLAVAGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTQGQVEFAKSLFKFLSVSV 160 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999986014030541268876765973505654258789999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
Q ss_conf 99999983215689784089799999999999999999999999999976679999999840699899999975448998
Q gi|254780690|r 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 (354)
Q Consensus 161 v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP 240 (354)
T Consensus 161 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMskqEvK~E~K~~EGdP 240 (358)
T PRK13109 161 VVLLLLRSERAKAVNAMFVDPSALPELILTVAMRLVSAVSIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDP 240 (358)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf 99999998899999987448999999999999999999999999999999999999999864899999999988663999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 99999999999999988986077686998735530788897688888888998076589999999999739978868899
Q gi|254780690|r 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 241 ~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
T Consensus 241 ~iK~r~R~~~re~a~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive~~pL 320 (358)
T PRK13109 241 SVKARLRSLAQDRARNRMLAAVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAERNGIPVIEDKPL 320 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHH
T ss_conf 99999999999999877872589883899888715677666689999998888458699999999999879978707899
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999997288989489899999999999997302
Q gi|254780690|r 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 321 AR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 321 ARaLy~~~~vg~~IP~~ly~aVA~iLa~vy~~~ 353 (358)
T PRK13109 321 ARSLYDAVQVDQVIPAEFYRPVAEILYFLFSRA 353 (358)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999997077899689999999999999999743