HHsearch alignment for GI: 254780690 and conserved domain: TIGR00328
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=100.00 E-value=0 Score=953.82 Aligned_cols=346 Identities=35% Similarity=0.575 Sum_probs=337.5
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 77686658787999998578751335999999999999999999999999999999997200012104979899999999
Q gi|254780690|r 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 (354)
Q Consensus 8 ~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T Consensus 1 ~eKTE~PT~kk~~~AReeG~V~~S~E~~~~~~ll~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (352)
T TIGR00328 1 EEKTEEPTPKKLRKAREEGNVPKSREVNTAAVLLAGVLVLLFFGSEGLADLLEALMSFFLSLETSDLLELESLVEIIIEL 80 (352)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99887776347888875089875311999999999999999988999999999999987532335531479999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCH--HHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999988776878532101371213779101693--430332-01266799999999999999999999
Q gi|254780690|r 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITI 164 (354)
Q Consensus 88 ~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNP--i~GlKr-iFS~k~lvel~KsllKv~li~~v~~~ 164 (354)
T Consensus 81 ~~~~~~~llp~~~~~l~~g~~~~~~Q~G~~ft~k~l~Pk~~KiNP~~~~G~KRS~FS~~~lvEl~Ks~lKv~lv~~v~~~ 160 (352)
T TIGR00328 81 IREVLLLLLPILVLLLVVGVLSNILQTGFLFTTKPLKPKLSKINPDVIKGLKRSLFSLQSLVELLKSILKVFLVSLVAYF 160 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998887302334354666767588768866768777788999999999999999999999
Q ss_pred HHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99832156897840897999999999999999999999999999766799999998406998999999754489989999
Q gi|254780690|r 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 (354)
Q Consensus 165 ~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~ 244 (354)
T Consensus 161 ~l~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~a~~D~~~qr~~y~~~LkMtkQEvKdE~Kq~EGdP~vKg 240 (352)
T TIGR00328 161 VLKNSLGELLSLSLYSLQQALTNALDLALSLLLLVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKG 240 (352)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99865889998861488899999999999999999999999999869999999987236776888777412694844368
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf 99999999999889860776869987355307888976888888889980765899999999997399788688999999
Q gi|254780690|r 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 (354)
Q Consensus 245 ~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~L 324 (354)
T Consensus 241 RiRq~qr~~ar~rMm~~VPkAdVvITNPTHyAVALkY~~~~m~AP~VVAKG~D~~AlkI~eiA~en~v~~~e~PpLARaL 320 (352)
T TIGR00328 241 RIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMKAPVVVAKGVDELALKIKEIAEENNVPIVENPPLARAL 320 (352)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHH
T ss_conf 89999999999999874468978963760134556414888988877877885688999999988691144087358752
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 97288989489899999999999997302
Q gi|254780690|r 325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 325 y~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 321 Y~~veig~~IP~~ly~AVAeVLa~Vy~l~ 349 (352)
T TIGR00328 321 YRQVEIGQEIPVELYKAVAEVLAYVYKLK 349 (352)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 11054766467679999999999999724