HHsearch alignment for GI: 254780690 and conserved domain: TIGR00328
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=96.80 E-value=0.075 Score=35.12 Aligned_cols=221 Identities=17% Similarity=0.170 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999720001210497989999999999999999999999998877687853
Q gi|254780690|r 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 (354)
Q Consensus 34 l~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q 113 (354)
T Consensus 31 ~~ll~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llp~~~~~l~~g~~~~~~Q~G~~ 110 (352)
T TIGR00328 31 AVLLAGVLVLLFFGSEGLADLLEALMSFFLSLETSDLLELESLVEIIIELIREVLLLLLPILVLLLVVGVLSNILQTGFL 110 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999988999999999999987532335531479999999999999999999999999999999988873023
Q ss_pred -HH--HCCCHHHCCCCC----CC-CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHH
Q ss_conf -21--013712137791----01-69343033201266799999999999999999999998321568978408979999
Q gi|254780690|r 114 -RI--PVLNLNHVKPSF----KR-VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 (354)
Q Consensus 114 -~G--~~fs~k~l~pk~----~r-lNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l 185 (354)
T Consensus 111 ft~k~l~Pk~~KiNP~~~~G~KRS~---FS~~~lvEl--~Ks~lKv~lv~~v~~~~l~~~~~~~~~L~~~~~~~~~~~~~ 185 (352)
T TIGR00328 111 FTTKPLKPKLSKINPDVIKGLKRSL---FSLQSLVEL--LKSILKVFLVSLVAYFVLKNSLGELLSLSLYSLQQALTNAL 185 (352)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 3435466676758876886676877---778899999--99999999999999999986588999886148889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999766799999998-4069989999997544899899999999999999988986
Q gi|254780690|r 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260 (354)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~ 260 (354)
T Consensus 186 ~-~~~~~~~~v~~~l~~~a~~D~~~qr~~y~~~LkMtkQEvKdE~Kq~EGdP~vKgRiRq~qr~~ar~rMm~~VPk 260 (352)
T TIGR00328 186 D-LALSLLLLVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAARRRMMQEVPK 260 (352)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9-99999999999999999986999999998723677688877741269484436889999999999999874468