HHsearch alignment for GI: 254780690 and conserved domain: pfam01312

>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=100.00  E-value=0  Score=852.03  Aligned_cols=342  Identities=33%  Similarity=0.517  Sum_probs=313.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r    7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH   86 (354)
Q Consensus         7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T Consensus         2 S~EKTE~PT~kRL~dARekGqV~~S~el~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~   79 (343)
T pfam01312         2 SEEKTEKPTPKKLRDARKKGQVPKSQDLTSAASLLAGSAYLFLLGSVFARRLIALLLLTLILIPL-PFSL-SVTDLFSLV   79 (343)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCH-HHHHHHHHH
T ss_conf             98889999857899999769997578799999999999999999999999999999999973654-4440-367999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999887768785321013712137791016934303320126679999999999999999999999
Q gi|254780690|r   87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL  166 (354)
Q Consensus        87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i  166 (354)
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriFS~~~LvEl~KsllKv~li~~v~~~~l  159 (343)
T pfam01312        80 VLLLLTVLLLLSLFVALLVGLASNLLQVGFLFSTEAIKPDFSKINPIKGLKRIFSARSLVELLKSILKVVAVGLIFYFFL  159 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHCCCCHHHCCHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999986036340603147773336874442200377789999999999999999999999


Q ss_pred             HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             83215689784089799999999999999999999999999976679999999840699899999975448998999999
Q gi|254780690|r  167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ  246 (354)
Q Consensus       167 ~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~  246 (354)
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~~~  239 (343)
T pfam01312       160 KNDLGTIVRLPGCSPMGIIVIVMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSKQEVKREYKESEGDPHVKGRR  239 (343)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999884499999999999999999999999999999999999999999980899999999988643998899999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf             99999999988986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r  247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK  326 (354)
Q Consensus       247 r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~  326 (354)
T Consensus       240 R~~~re~~~~~m~~~V~~A~vVItNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven~~LAR~Ly~  319 (343)
T pfam01312       240 RQIAREIASERMMQDVPKADVVVTNPTHYAVALYYDPEEMPAPRIVAKGEDEQALAIRAIAEENGIPVVENPPLARALYR  319 (343)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
T ss_conf             99999999857872589898899999862789887889999998888548699999999999879978837799999998


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             288989489899999999999997
Q gi|254780690|r  327 QVPINSAIPPVFYKAVAQLIYKIY  350 (354)
Q Consensus       327 ~~~ig~~Ip~~~y~aVA~il~~v~  350 (354)
T Consensus       320 ~~~vg~~IP~~ly~aVA~iL~~vy  343 (343)
T pfam01312       320 TVEVGQEIPEELFEAVAEVLVWVY  343 (343)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             077999589999999999998769