HHsearch alignment for GI: 254780690 and conserved domain: pfam01312
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=100.00 E-value=0 Score=852.03 Aligned_cols=342 Identities=33% Similarity=0.517 Sum_probs=313.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 (354)
Q Consensus 7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T Consensus 2 S~EKTE~PT~kRL~dARekGqV~~S~el~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~ 79 (343)
T pfam01312 2 SEEKTEKPTPKKLRDARKKGQVPKSQDLTSAASLLAGSAYLFLLGSVFARRLIALLLLTLILIPL-PFSL-SVTDLFSLV 79 (343)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCH-HHHHHHHHH
T ss_conf 98889999857899999769997578799999999999999999999999999999999973654-4440-367999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999887768785321013712137791016934303320126679999999999999999999999
Q gi|254780690|r 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 (354)
Q Consensus 87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i 166 (354)
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriFS~~~LvEl~KsllKv~li~~v~~~~l 159 (343)
T pfam01312 80 VLLLLTVLLLLSLFVALLVGLASNLLQVGFLFSTEAIKPDFSKINPIKGLKRIFSARSLVELLKSILKVVAVGLIFYFFL 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHCCCCHHHCCHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986036340603147773336874442200377789999999999999999999999
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 83215689784089799999999999999999999999999976679999999840699899999975448998999999
Q gi|254780690|r 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 (354)
Q Consensus 167 ~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~ 246 (354)
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~~~ 239 (343)
T pfam01312 160 KNDLGTIVRLPGCSPMGIIVIVMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSKQEVKREYKESEGDPHVKGRR 239 (343)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999884499999999999999999999999999999999999999999980899999999988643998899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 99999999988986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 247 r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
T Consensus 240 R~~~re~~~~~m~~~V~~A~vVItNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven~~LAR~Ly~ 319 (343)
T pfam01312 240 RQIAREIASERMMQDVPKADVVVTNPTHYAVALYYDPEEMPAPRIVAKGEDEQALAIRAIAEENGIPVVENPPLARALYR 319 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
T ss_conf 99999999857872589898899999862789887889999998888548699999999999879978837799999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 288989489899999999999997
Q gi|254780690|r 327 QVPINSAIPPVFYKAVAQLIYKIY 350 (354)
Q Consensus 327 ~~~ig~~Ip~~~y~aVA~il~~v~ 350 (354)
T Consensus 320 ~~~vg~~IP~~ly~aVA~iL~~vy 343 (343)
T pfam01312 320 TVEVGQEIPEELFEAVAEVLVWVY 343 (343)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 077999589999999999998769