HHsearch alignment for GI: 254780690 and conserved domain: pfam01312
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=96.72 E-value=0.085 Score=34.69 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=151.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998767877686658787999-----998578751335999999999999999999999999999999997200012104
Q gi|254780690|r 1 MSENDAPDNKTEAPSSKKIED-----ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE 75 (354)
Q Consensus 1 MAe~d~~~eKTE~PT~kRL~d-----ARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (354)
T Consensus 1 mS~E-KTE~PT~kRL~dARekGqV~~S~el~~---~--~~l~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 73 (343)
T pfam01312 1 MSEE-KTEKPTPKKLRDARKKGQVPKSQDLTS---A--ASLLAGSAYLFLLGSVFARRL-IALLLLTLILIPLPFSLSVT 73 (343)
T ss_pred CCCC-CCCCCCHHHHHHHHHCCCCCCHHHHHH---H--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHH
T ss_conf 9988-899998578999997699975787999---9--999999999999999999999-99999999736544440367
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 97-98999999999999999999999999887768---7853210137121377--910169343033201266799999
Q gi|254780690|r 76 DI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS---YLIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFM 149 (354)
Q Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~---~l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~ 149 (354)
T Consensus 74 ~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriFS~~~LvEl-----~Ksll 146 (343)
T pfam01312 74 DLFSLVVLLLLTVLL--LLSLFVALLVGLASNLLQVGFLFSTEAIKPDFSKINPIKGLKRIFSARSLVEL-----LKSIL 146 (343)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCEECHHHCCCCHHHCCHHHCHHCCCCHHHHHHH-----HHHHH
T ss_conf 999999999999999--99999999999999986036340603147773336874442200377789999-----99999
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHH
Q ss_conf 99999999999999999832156897840897999999999999999999999999999766799999998-40699899
Q gi|254780690|r 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQE 228 (354)
Q Consensus 150 KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqE 228 (354)
T Consensus 147 Kv~li~~v~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMSkqEvKdE 225 (343)
T pfam01312 147 KVVAVGLIFYFFLKND-LGTIVRLPGCSPMGIIVIVMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSKQEVKRE 225 (343)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999999999-999998844999999999999999999999999999999999999999999808999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHC----C--------------CCCEEE-ECCCCEEEEEEECCCCCCC
Q ss_conf 9999754489989999999999999998898-607----7--------------686998-7355307888976888888
Q gi|254780690|r 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMM-EAT----S--------------RATIII-TNPTHYALALRYIQTENDA 288 (354)
Q Consensus 229 vK~E~K~~EGdP~iK~~~r~~~re~~~~~~~-~~V----~--------------~A~vvi-tNPTH~AVAL~Y~~~~~~a 288 (354)
T Consensus 226 ~Ke~EGdP~iK~~~R~~~re~~~~~m~~~V~~A~vVItNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~V 305 (343)
T pfam01312 226 YKESEGDPHVKGRRRQIAREIASERMMQDVPKADVVVTNPTHYAVALYYDPEEMPAPRIVAKGEDEQALAIRAIAEENGI 305 (343)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 88643998899999999999998578725898988999998627898878899999988885486999999999998799
Q ss_pred CEEEEECCCHHHHHHH
Q ss_conf 8899807658999999
Q gi|254780690|r 289 PVLVAKGQNLIAKKMR 304 (354)
Q Consensus 289 P~vvaKG~~~~A~~Ir 304 (354)
T Consensus 306 Piven~---~LAR~Ly 318 (343)
T pfam01312 306 PVVENP---PLARALY 318 (343)
T ss_pred CEEECH---HHHHHHH
T ss_conf 788377---9999999