Query gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 354
No_of_seqs 156 out of 1618
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 14:52:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780690.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3bzs_A ESCU; auto cleavage pr 100.0 0 0 403.0 10.2 135 219-353 2-136 (137)
2 >2jli_A YSCU, YOP proteins tra 100.0 3.4E-41 1.4E-45 346.2 11.1 123 228-350 1-123 (123)
3 >2jlj_A YSCU, YOP proteins tra 100.0 2.7E-31 8.1E-36 267.7 10.6 98 256-353 1-98 (107)
4 >3bzy_B ESCU; auto cleavage pr 99.9 1.8E-25 5.4E-30 221.6 10.1 82 272-353 1-82 (83)
5 >2vt1_B Surface presentation o 99.8 3.1E-20 9.1E-25 180.2 7.5 67 272-338 1-67 (68)
6 >3c01_E Surface presentation o 99.8 1.4E-18 4.2E-23 167.0 8.2 62 272-333 1-62 (62)
7 >3bzy_A ESCU; auto cleavage pr 99.7 4.8E-17 1.4E-21 155.0 6.6 53 219-271 2-54 (54)
8 >3c01_A Surface presentation o 99.6 1.3E-15 3.8E-20 143.6 6.5 48 224-271 1-48 (48)
9 >2vt1_A Surface presentation o 99.6 8.5E-17 2.5E-21 153.0 -1.5 51 221-271 2-52 (52)
10 >2r18_A Capsid assembly protei 83.1 1.1 3.3E-05 25.4 3.1 29 319-348 18-46 (70)
11 >1wo8_A Methylglyoxal synthase 72.7 5.6 0.00016 19.8 4.2 33 296-328 88-120 (126)
12 >1b93_A Protein (methylglyoxal 71.2 5.9 0.00018 19.6 4.0 31 296-326 87-117 (120)
13 >1vmd_A MGS, methylglyoxal syn 71.0 5.3 0.00016 20.0 3.7 30 297-326 88-117 (120)
14 >1ugo_A BCL2-associated athano 67.8 5 0.00015 20.2 3.1 32 225-256 54-85 (99)
15 >1uk5_A BAG-family molecular c 67.6 5.1 0.00015 20.1 3.1 32 225-256 66-97 (111)
16 >1m62_A BAG-family molecular c 66.3 5.6 0.00017 19.8 3.1 33 224-256 46-78 (87)
17 >2axq_A Saccharopine dehydroge 64.2 4.7 0.00014 20.4 2.4 91 258-350 82-195 (196)
18 >1m7k_A Silencer of death doma 63.4 6.9 0.0002 19.1 3.1 32 225-256 60-91 (99)
19 >1v47_A ATP sulfurylase; produ 61.0 11 0.00032 17.5 3.7 44 221-273 1-53 (174)
20 >2yvq_A Carbamoyl-phosphate sy 59.7 11 0.00034 17.3 4.6 34 295-328 109-142 (143)
21 >1a9x_A Carbamoyl phosphate sy 59.2 9.9 0.00029 17.8 3.3 34 296-329 84-117 (120)
22 >1zcz_A Bifunctional purine bi 58.6 12 0.00035 17.2 4.0 36 296-331 106-142 (182)
23 >1yj7_A ESCJ; mixed alpha/beta 55.9 12 0.00036 17.2 3.3 55 245-308 19-80 (103)
24 >1ko7_A HPR kinase/phosphatase 52.5 9.3 0.00028 18.0 2.2 59 260-318 43-111 (129)
25 >2gv9_A DNA polymerase; polyme 52.0 7.3 0.00022 18.9 1.6 88 213-305 23-130 (276)
26 >1x6v_B Bifunctional 3'-phosph 48.5 17 0.00049 16.0 4.9 30 220-249 2-40 (238)
27 >2yv2_A Succinyl-COA synthetas 47.7 8.6 0.00025 18.3 1.4 56 259-316 66-127 (129)
28 >2der_A TRNA-specific 2-thiour 46.0 12 0.00036 17.2 2.0 85 233-319 103-206 (207)
29 >2po3_A 4-dehydrase; external 45.0 19 0.00055 15.6 8.9 97 223-319 1-146 (233)
30 >1p3d_A UDP-N-acetylmuramate-- 44.1 19 0.00057 15.5 3.3 25 302-326 92-116 (116)
31 >1tlt_A Putative oxidoreductas 43.0 6.4 0.00019 19.3 0.2 54 262-317 63-122 (184)
32 >1j6u_A UDP-N-acetylmuramate-a 39.2 23 0.00067 15.0 3.4 26 302-327 86-111 (113)
33 >3cr8_A Sulfate adenylyltranfe 38.9 23 0.00067 15.0 4.0 30 220-249 2-40 (221)
34 >2c4w_A 3-dehydroquinate dehyd 38.3 3.5 0.0001 21.4 -1.7 28 264-291 78-108 (176)
35 >1gqo_A Dehydroquinase, dhqase 37.1 4.4 0.00013 20.7 -1.4 33 259-291 61-96 (143)
36 >1hye_A L-lactate/malate dehyd 36.6 13 0.00037 17.0 0.9 69 244-313 97-166 (313)
37 >2uyg_A 3-dehydroquinate dehyd 36.1 4.2 0.00012 20.8 -1.7 18 263-280 65-85 (149)
38 >1b8p_A Protein (malate dehydr 35.1 24 0.00072 14.8 2.1 66 248-313 110-177 (329)
39 >3hvy_A Cystathionine beta-lya 35.0 19 0.00056 15.6 1.6 20 299-318 133-152 (215)
40 >2om6_A Probable phosphoserine 34.9 16 0.00048 16.2 1.2 22 220-241 28-49 (85)
41 >1r9d_A Glycerol dehydratase; 34.5 18 0.00054 15.8 1.4 27 228-254 162-188 (216)
42 >1cs1_A CGS, protein (cystathi 33.3 26 0.00078 14.5 2.1 22 300-321 156-177 (246)
43 >2exr_A Cytokinin dehydrogenas 33.1 20 0.00059 15.4 1.4 58 259-316 31-91 (115)
44 >3dr4_A Putative perosamine sy 32.7 28 0.00081 14.3 2.1 24 295-318 155-178 (267)
45 >3dty_A Oxidoreductase, GFO/ID 32.6 25 0.00075 14.6 1.9 81 263-350 84-170 (226)
46 >1f0x_A DLDH, D-lactate dehydr 31.2 12 0.00035 17.2 0.0 55 262-316 19-74 (103)
47 >3k8x_A Acetyl-COA carboxylase 30.7 30 0.00089 14.0 3.9 50 267-316 30-88 (255)
48 >3cmu_A Protein RECA, recombin 30.7 30 0.00088 14.1 2.0 43 230-272 120-162 (278)
49 >1jhd_A Sulfate adenylyltransf 30.4 30 0.0009 14.0 3.4 31 220-250 2-41 (224)
50 >3eag_A UDP-N-acetylmuramate:L 30.3 30 0.0009 14.0 2.7 24 302-325 81-104 (105)
51 >1v9c_A Precorrin-8X methyl mu 30.0 19 0.00057 15.6 0.9 98 221-318 72-184 (218)
52 >3cmw_A Protein RECA, recombin 29.8 16 0.00048 16.1 0.5 46 230-275 116-161 (274)
53 >3frk_A QDTB; aminotransferase 29.5 30 0.0009 14.0 1.9 83 237-319 26-152 (237)
54 >2fnu_A Aminotransferase; prot 29.2 31 0.00091 13.9 1.9 24 295-318 123-146 (238)
55 >1ydw_A AX110P-like protein; s 29.0 30 0.0009 14.0 1.8 59 259-319 66-130 (191)
56 >2oqx_A Tryptophanase; lyase, 28.8 32 0.00095 13.8 2.4 21 299-319 145-165 (260)
57 >2ioj_A Hypothetical protein A 28.6 30 0.0009 14.0 1.7 61 266-327 54-118 (139)
58 >1uqr_A 3-dehydroquinate dehyd 28.5 3.2 9.5E-05 21.7 -3.3 45 259-327 62-112 (154)
59 >1knx_A Probable HPR(Ser) kina 28.5 24 0.0007 14.8 1.2 29 289-318 86-114 (119)
60 >3ecd_A Serine hydroxymethyltr 28.1 33 0.00097 13.7 1.9 22 300-321 148-169 (243)
61 >2yv1_A Succinyl-COA ligase [A 27.9 9.1 0.00027 18.1 -1.0 42 272-315 81-125 (128)
62 >3a2b_A Serine palmitoyltransf 27.9 33 0.00098 13.7 1.9 27 295-321 107-133 (191)
63 >1b4u_B LIGA, LIGB, protocatec 27.4 34 0.001 13.6 5.1 49 279-327 82-136 (248)
64 >2f00_A UDP-N-acetylmuramate-- 27.4 34 0.001 13.6 3.1 44 260-326 59-102 (102)
65 >3f4l_A Putative oxidoreductas 27.1 18 0.00052 15.8 0.3 53 263-317 64-122 (125)
66 >2cb1_A O-acetyl homoserine su 26.9 34 0.001 13.5 1.9 23 299-321 158-180 (277)
67 >1b9h_A AHBA synthase, protein 26.8 29 0.00086 14.1 1.4 57 262-318 76-160 (250)
68 >3cmu_A Protein RECA, recombin 26.7 35 0.001 13.5 2.0 42 232-273 122-163 (281)
69 >1mdo_A ARNB aminotransferase; 26.4 30 0.00088 14.0 1.4 56 263-318 62-145 (243)
70 >1svv_A Threonine aldolase; st 26.3 35 0.001 13.5 1.9 28 298-325 141-168 (240)
71 >1h05_A 3-dehydroquinate dehyd 26.3 3.7 0.00011 21.2 -3.3 31 261-291 65-98 (146)
72 >3cmu_A Protein RECA, recombin 25.9 36 0.0011 13.4 1.9 42 231-272 128-169 (286)
73 >2hma_A Probable tRNA (5-methy 25.7 15 0.00045 16.3 -0.2 30 290-319 169-198 (199)
74 >1gtz_A 3-dehydroquinate dehyd 25.6 6.2 0.00018 19.4 -2.2 20 261-280 69-91 (156)
75 >2f1r_A Molybdopterin-guanine 25.6 36 0.0011 13.4 1.8 18 263-280 15-32 (35)
76 >3hn7_A UDP-N-acetylmuramate-L 25.3 37 0.0011 13.3 2.8 24 302-325 95-118 (119)
77 >3hl2_A O-phosphoseryl-tRNA(SE 25.2 36 0.0011 13.4 1.6 25 294-318 97-121 (178)
78 >2csu_A 457AA long hypothetica 24.6 38 0.0011 13.2 3.6 37 285-321 127-163 (183)
79 >3h75_A Periplasmic sugar-bind 24.4 31 0.00092 13.9 1.2 32 262-316 60-91 (208)
80 >1ax4_A Tryptophanase; tryptop 24.2 38 0.0011 13.2 2.2 23 298-320 150-172 (266)
81 >2r2n_A Kynurenine/alpha-amino 24.2 38 0.0011 13.2 2.3 21 233-253 36-56 (80)
82 >3js8_A Cholesterol oxidase; c 23.6 39 0.0012 13.1 1.9 52 265-316 6-58 (87)
83 >2gd7_A Hexim1 protein, HMBA-i 23.5 32 0.00095 13.8 1.1 25 213-237 19-43 (107)
84 >3b8x_A WBDK, pyridoxamine 5-p 23.4 37 0.0011 13.3 1.4 115 221-346 250-389 (390)
85 >1j5p_A Aspartate dehydrogenas 23.1 21 0.00061 15.3 0.0 53 261-315 57-116 (146)
86 >1scf_A Stem cell factor; stee 23.0 40 0.0012 13.0 1.9 15 215-229 237-251 (273)
87 >3eds_A MUTT/nudix family prot 22.7 41 0.0012 13.0 3.4 53 264-316 23-76 (153)
88 >2oga_A Transaminase; PLP-depe 22.6 40 0.0012 13.0 1.4 83 236-318 21-147 (233)
89 >3e18_A Oxidoreductase; dehydr 22.6 32 0.00094 13.8 0.9 56 259-316 60-121 (125)
90 >1k7c_A Rhamnogalacturonan ace 22.2 41 0.0012 12.9 5.9 22 294-315 146-167 (168)
91 >2g5g_X Putative lipoprotein; 22.0 42 0.0012 12.9 6.6 51 299-349 122-178 (268)
92 >1efv_A Electron transfer flav 21.8 42 0.0012 12.9 2.7 34 286-319 13-49 (132)
93 >1v72_A Aldolase; PLP-dependen 21.6 43 0.0013 12.8 2.1 26 295-320 157-182 (259)
94 >2o36_A ThiMet oligopeptidase; 21.6 43 0.0013 12.8 2.1 26 318-343 55-80 (84)
95 >3cmw_A Protein RECA, recombin 21.5 35 0.001 13.5 1.0 42 231-272 121-162 (279)
96 >2a7v_A Serine hydroxymethyltr 21.5 43 0.0013 12.8 2.1 25 295-319 152-176 (266)
97 >2nu8_A Succinyl-COA ligase [A 21.4 20 0.00059 15.4 -0.3 52 263-316 63-120 (122)
98 >2grj_A Dephospho-COA kinase; 21.2 30 0.00089 14.0 0.6 15 259-273 91-105 (126)
99 >3e82_A Putative oxidoreductas 21.2 34 0.001 13.6 0.8 58 258-317 61-124 (127)
100 >1jg8_A L-ALLO-threonine aldol 21.2 43 0.0013 12.8 1.9 28 298-325 140-167 (239)
101 >3kux_A Putative oxidoreductas 21.1 43 0.0013 12.8 1.5 56 260-317 63-124 (127)
102 >2p2s_A Putative oxidoreductas 21.1 26 0.00077 14.5 0.2 56 260-317 62-123 (127)
103 >1dih_A Dihydrodipicolinate re 21.1 6.5 0.00019 19.3 -2.8 56 262-319 70-130 (162)
104 >2dkj_A Serine hydroxymethyltr 21.0 44 0.0013 12.7 1.9 28 299-326 147-174 (244)
105 >1ibj_A CBL, cystathionine bet 21.0 44 0.0013 12.7 1.9 26 295-320 231-256 (326)
106 >2z67_A O-phosphoseryl-tRNA(SE 20.9 44 0.0013 12.7 2.2 39 263-319 185-223 (314)
107 >3cmw_A Protein RECA, recombin 20.7 31 0.00091 13.9 0.5 43 231-273 121-163 (279)
108 >2ez2_A Beta-tyrosinase, tyros 20.7 44 0.0013 12.7 2.4 24 298-321 106-129 (199)
109 >3i23_A Oxidoreductase, GFO/ID 20.6 34 0.001 13.6 0.7 54 261-316 62-121 (125)
110 >1sou_A 5,10-methenyltetrahydr 20.4 45 0.0013 12.6 1.8 14 224-237 1-14 (194)
111 >3bb8_A CDP-4-keto-6-deoxy-D-g 20.2 45 0.0013 12.6 1.9 124 221-352 288-435 (437)
112 >1ldn_A L-lactate dehydrogenas 20.2 32 0.00094 13.8 0.5 33 270-302 123-155 (316)
113 >1bs0_A Protein (8-amino-7-oxo 20.0 46 0.0013 12.6 2.1 25 295-319 106-130 (187)
No 1
>>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cyclization, membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A (A:)
Probab=100.00 E-value=0 Score=402.99 Aligned_cols=135 Identities=31% Similarity=0.468 Sum_probs=133.3
Q ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCH
Q ss_conf 98406998999999754489989999999999999998898607768699873553078889768888888899807658
Q gi|254780690|r 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 (354)
Q Consensus 219 ~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~ 298 (354)
.|+||||||||||||||+||||+||++||++|||+++++++.+|++|||||||||||||||+||+++++||+|+|||.|.
T Consensus 2 tk~lkMsk~EvK~E~K~~EGdP~iK~~rr~~~~e~~~~~~~~~v~~a~vvi~NPth~AVAL~Y~~~~~~aP~VvAkG~~~ 81 (137)
T 3bzs_A 2 SHMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKLGETPLPLVIETGKDA 81 (137)
T ss_dssp --------------------------------------CHHHHHHHCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETH
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEEECCCCCCCCEEEEEECCH
T ss_conf 72145798999999884439988999999999999972666411225189858976899999768888798799986778
Q ss_pred HHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999739978868899999997288989489899999999999997302
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
+|.+|+++|++|||||++|+||||+||+++++|++||+++|++||+||+|||++|
T Consensus 82 ~A~~I~~~A~~~gVPiv~~~~LAr~Ly~~~~~g~~IP~ely~aVA~Il~~v~~l~ 136 (137)
T 3bzs_A 82 KALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLD 136 (137)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHHHHHHHHSCTTCBCCGGGHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999859829988899999997488989179999999999999998623
No 2
>>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis} (A:)
Probab=100.00 E-value=3.4e-41 Score=346.17 Aligned_cols=123 Identities=29% Similarity=0.472 Sum_probs=121.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 99999754489989999999999999998898607768699873553078889768888888899807658999999999
Q gi|254780690|r 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 (354)
Q Consensus 228 EvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A 307 (354)
||||||||+||||+||++|||+|||+++++++.+|++||+||+||||+||||+||++.++||+|+|||.|++|++|+++|
T Consensus 1 EvK~E~Ke~EGdP~iK~~rr~~~~e~~~~~~~~~v~~a~~vi~npth~AVaL~Y~~~~~~aP~VvakG~g~~A~~I~~~A 80 (123)
T 2jli_A 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 80 (123)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHH
T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 90256553659989999999999999864123057745189848723058878578999999997636819999999999
Q ss_pred HHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9739978868899999997288989489899999999999997
Q gi|254780690|r 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 (354)
Q Consensus 308 ~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~ 350 (354)
+++||||++|++|||+||+++++|++||+++|++||+||+||-
T Consensus 81 ~~~gIPiv~d~~LAr~L~~~~~~g~~IP~ely~aVA~il~~v~ 123 (123)
T 2jli_A 81 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 123 (123)
T ss_dssp HHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHC---
T ss_pred HHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9859988978999999997488989069999999999998419
No 3
>>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein transport, type III secretion system, plasmid; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A (A:38-144)
Probab=99.97 E-value=2.7e-31 Score=267.73 Aligned_cols=98 Identities=26% Similarity=0.430 Sum_probs=96.0
Q ss_pred HHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCC
Q ss_conf 88986077686998735530788897688888888998076589999999999739978868899999997288989489
Q gi|254780690|r 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 (354)
Q Consensus 256 ~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip 335 (354)
++|+++|++|||||+|||||||||+||+++++||+|+|||.|++|++||++|+++||||++|++|||+||+++++|++||
T Consensus 1 r~~~~~v~~a~~vi~NPTh~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPi~~d~~LAr~Ly~~~~~g~~IP 80 (107)
T 2jlj_A 1 RNMRENVKRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 80 (107)
T ss_dssp CCHHHHHHTCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCC
T ss_pred HHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCC
T ss_conf 57774057413899578716789887889998788204168299999999999859978848999999997488999369
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999997302
Q gi|254780690|r 336 PVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 336 ~~~y~aVA~il~~v~~lk 353 (354)
+++|++||+||+|+|+++
T Consensus 81 ~ely~~VA~Il~~v~~~~ 98 (107)
T 2jlj_A 81 AEQIEATAEVLRWLERQN 98 (107)
T ss_dssp GGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999987
No 4
>>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} (B:)
Probab=99.93 E-value=1.8e-25 Score=221.61 Aligned_cols=82 Identities=34% Similarity=0.463 Sum_probs=80.9
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354)
||||||||+||+++++||+|+|||.|.+|++||++|+++||||++|++|||+||+++++|++||+|+|++||+||+|+|+
T Consensus 1 PTH~AVaL~Yd~~~~~aP~VvAkG~~~~A~~I~~~A~~~gIPiv~d~~LAr~L~~~~~~g~~IP~ely~~VAeil~~i~~ 80 (83)
T 3bzy_B 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPVAQLIRIAID 80 (83)
T ss_dssp CCCEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHHHHHHHHHCC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97799999876899989999997477889999999998698199799999999965889894699999999999999996
Q ss_pred HC
Q ss_conf 02
Q gi|254780690|r 352 KK 353 (354)
Q Consensus 352 lk 353 (354)
+.
T Consensus 81 le 82 (83)
T 3bzy_B 81 LD 82 (83)
T ss_dssp CC
T ss_pred HC
T ss_conf 23
No 5
>>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.0A {Shigella flexneri} (B:1-68)
Probab=99.82 E-value=3.1e-20 Score=180.23 Aligned_cols=67 Identities=30% Similarity=0.340 Sum_probs=65.9
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 5530788897688888888998076589999999999739978868899999997288989489899
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~ 338 (354)
||||||||+||+++++||+|+|||.|.+|++||++|+++||||++|++|||+||+++++|++||+|.
T Consensus 1 Pth~AVaL~Yd~~~~~aP~V~AkG~g~~A~~I~~~A~~~gVPi~~~~~LAr~L~~~~~~g~~IP~e~ 67 (68)
T 2vt1_B 1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEH 67 (68)
T ss_dssp CCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTT
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHH
T ss_conf 9679999886789998999999748788999999999869909989999999998055899589999
No 6
>>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} (E:1-62)
Probab=99.76 E-value=1.4e-18 Score=167.00 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCC
Q ss_conf 55307888976888888889980765899999999997399788688999999972889894
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~ 333 (354)
||||||||+||+++++||+|+|||.|.+|++||++|++|||||+||++|||+||+++++||+
T Consensus 1 PTh~AVaL~Yd~~~~~aP~V~AkG~g~~A~~I~~~A~~~gIPi~~~~~LAr~L~~~~~~g~~ 62 (62)
T 3c01_E 1 PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDL 62 (62)
T ss_dssp CCCEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTCB
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCC
T ss_conf 96699998867899989999987477889999999998699499699999999972888770
No 7
>>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} (A:)
Probab=99.68 E-value=4.8e-17 Score=154.96 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=51.7
Q ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 98406998999999754489989999999999999998898607768699873
Q gi|254780690|r 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354)
Q Consensus 219 ~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354)
.|+||||||||||||||+||||+||++||++|||+++++++.+||+|||||||
T Consensus 2 ~k~lrMskqEvK~E~Ke~EGdP~iK~~rr~~~re~~~~~~~~~V~~Advvv~N 54 (54)
T 3bzy_A 2 SHMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN 54 (54)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 74455799999999986529999999999999999997898507889987309
No 8
>>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} (A:)
Probab=99.60 E-value=1.3e-15 Score=143.62 Aligned_cols=48 Identities=25% Similarity=0.525 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 998999999754489989999999999999998898607768699873
Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354)
Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354)
||||||||||||+||||+||++||++|||+++++++.+||+|||||||
T Consensus 1 Msk~EvK~E~Ke~EGdP~vK~~rr~~~~e~~~~~~~~~V~~AdvvvtN 48 (48)
T 3c01_A 1 MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN 48 (48)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 988999999986419999999999999999986888408888976209
No 9
>>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.0A {Shigella flexneri} (A:)
Probab=99.58 E-value=8.5e-17 Score=152.99 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=50.4
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 406998999999754489989999999999999998898607768699873
Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354)
Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354)
+||||||||||||||+||||+||++||++|||+++++++.+||+|||||||
T Consensus 2 dLrMskqEvK~E~Ke~EGdP~iK~~rr~~~~e~~~~~~~~~V~~AdvVvtN 52 (52)
T 2vt1_A 2 DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN 52 (52)
T ss_dssp ------------------------------CCCSCHHHHHHHHTCSEEEEC
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 877689999999886539999999999999999997898508889987209
No 10
>>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A (A:70-139)
Probab=83.08 E-value=1.1 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999972889894898999999999999
Q gi|254780690|r 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 (354)
Q Consensus 319 ~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~ 348 (354)
-||-+.|. .+--++-|+|+|++||+|++.
T Consensus 18 rlAnsvYG-~P~QepaPeeF~~aVaavf~~ 46 (70)
T 2r18_A 18 RAATSIYG-APGQAEPPQAFIDEVAKVYEI 46 (70)
T ss_dssp HHHHHHHC-CGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 99998736-887788978999999999999
No 11
>>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} (A:)
Probab=72.67 E-value=5.6 Score=19.82 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
Q ss_conf 658999999999973997886889999999728
Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 (354)
Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~ 328 (354)
.+.-...||+.|-+++||.+-|+..|+++-...
T Consensus 88 ~~~dg~~iRR~ai~~~Vpl~T~~~tA~a~i~al 120 (126)
T 1wo8_A 88 HEPDVQALMRVCNVHGVPLATNLVAAEALIAWI 120 (126)
T ss_dssp THHHHHHHHHHHHHTTCCEECSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
T ss_conf 521089999999971989894899999999999
No 12
>>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} (A:12-131)
Probab=71.22 E-value=5.9 Score=19.59 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 6589999999999739978868899999997
Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
.+.-...||+.|-+++||.+-|+..|+++-.
T Consensus 87 ~~~d~~~iRR~Av~~~Vpl~T~~~tA~~~~~ 117 (120)
T 1b93_A 87 HDPDVKALLRLATVWNIPVATNVATADFIIQ 117 (120)
T ss_dssp THHHHHHHHHHHHHTTCCEESSHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCEEECHHHHHHHHH
T ss_conf 5232999999999719955627999999999
No 13
>>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} (A:28-147)
Probab=70.98 E-value=5.3 Score=20.01 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 589999999999739978868899999997
Q gi|254780690|r 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 297 ~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
..-...||+.|-+++||++-|+..|+++-.
T Consensus 88 ~~dg~~iRR~Av~~~ipl~T~~~tA~~~~~ 117 (120)
T 1vmd_A 88 DVDVKALIRIATVYNIPVAITRSTADFLIS 117 (120)
T ss_dssp SCCHHHHHHHHHHTTCCEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 540999999999839877736999999998
No 14
>>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} (A:)
Probab=67.82 E-value=5 Score=20.16 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999754489989999999999999998
Q gi|254780690|r 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354)
Q Consensus 225 skqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354)
+++=+|=.-=+++|||.||.+||+.-+++..-
T Consensus 54 ~~~LlkLD~Id~~G~~~iR~~RK~~v~~iQ~~ 85 (99)
T 1ugo_A 54 TKQLFEIDSVDTEGKGDIQQARKRAAQETERL 85 (99)
T ss_dssp HHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999867845589799999999999999999
No 15
>>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=67.63 E-value=5.1 Score=20.11 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999754489989999999999999998
Q gi|254780690|r 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354)
Q Consensus 225 skqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354)
+++=+|=.-=|++|||.||.+||+.-+++..-
T Consensus 66 ~~~LlkLD~Ie~~g~~~vR~~RK~~v~~vQ~~ 97 (111)
T 1uk5_A 66 TKELLALDSVDPEGRADVRQARRDGVRKVQTI 97 (111)
T ss_dssp HHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999866836588799999999999999999
No 16
>>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} (A:)
Probab=66.31 E-value=5.6 Score=19.78 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998999999754489989999999999999998
Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354)
Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354)
++++=+|=.-=|++|||.+|.+||+.-+++..-
T Consensus 46 L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~ 78 (87)
T 1m62_A 46 LTKELLELDSVETGGQDSVRQARKEAVCKIQAI 78 (87)
T ss_dssp HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999877846589899999999999999999
No 17
>>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458)
Probab=64.20 E-value=4.7 Score=20.40 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHCCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH-----HH-------
Q ss_conf 986077686998---735530788897688888888998076589999999999739978868899-----99-------
Q gi|254780690|r 258 MMEATSRATIII---TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL-----AR------- 322 (354)
Q Consensus 258 ~~~~V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L-----AR------- 322 (354)
....+.++|+|| .+++|..++...-. ...++|.++........+.+.|+++|++++....+ |+
T Consensus 82 l~~~~~~~DiVI~~~P~~~h~~va~~~i~--~gk~vv~~s~~~~~~~~L~~~ak~~Gi~~i~~~gl~~~~m~~~vg~~~~ 159 (196)
T 2axq_A 82 LDKVLADNDVVISLIPYTFHPNVVKSAIR--TKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLGYSSMAATVGYPVA 159 (196)
T ss_dssp HHHHHHTSSEEEECSCGGGHHHHHHHHHH--HTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBSCCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCHHHCHHHHHHHHH--CCCCEECCHHCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99986189999999881336999999997--4996750400010133320233047837840677773323387619999
Q ss_pred ---HHHHHCCCCC-----CCCHHHHHHHHHHHHHHH
Q ss_conf ---9997288989-----489899999999999997
Q gi|254780690|r 323 ---SLFKQVPINS-----AIPPVFYKAVAQLIYKIY 350 (354)
Q Consensus 323 ---~Ly~~~~ig~-----~Ip~~~y~aVA~il~~v~ 350 (354)
.+--+.++.. ++-+|.|.++-+-|..=|
T Consensus 160 ~~~~~~~~~~~~~~g~~~p~~~~~~~p~~~~l~~~~ 195 (196)
T 2axq_A 160 IATKFVLDGTIKGPGLLAPYSPEINDPIMKELKDKY 195 (196)
T ss_dssp HHHHHHHTTSSCCSEEECSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999999759988986879767760589999999967
No 18
>>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} (A:)
Probab=63.44 E-value=6.9 Score=19.09 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999754489989999999999999998
Q gi|254780690|r 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354)
Q Consensus 225 skqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354)
+++=+|=.-=+++|||.+|.+||..-+++..-
T Consensus 60 ~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~ 91 (99)
T 1m7k_A 60 TKELLELDSVETGGQDSVRQARKEAVCKIQAI 91 (99)
T ss_dssp HHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999866836589799999999999999999
No 19
>>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} (A:138-311)
Probab=60.97 E-value=11 Score=17.50 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHCCCHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 4069989999997544---------8998999999999999999889860776869987355
Q gi|254780690|r 221 KLKMSKQEIKDEIKQS---------YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 (354)
Q Consensus 221 ~lkMskqEvK~E~K~~---------EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPT 273 (354)
++|+|++|++++.|+. --||.-++.- ...+.+. ..+|.++.||.
T Consensus 1 slr~tP~e~r~~f~~~gw~~VvafqtrnP~Hr~HE------~l~r~a~---e~~d~lli~pl 53 (174)
T 1v47_A 1 PLEKTPEEVRAFFRQRGWRKVVAFQTRNAPHRAHE------YLIRLGL---ELADGVLVHPI 53 (174)
T ss_dssp TTCCCHHHHHHHHHHTTCCSEEEEEESSCCCHHHH------HHHHHHH---HHSSEEEEEEB
T ss_pred CHHCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHH------HHHHHHH---HHCCCEEEEEE
T ss_conf 13219999999987548762354203686643679------9999999---72586599642
No 20
>>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} (A:)
Probab=59.72 E-value=11 Score=17.34 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
Q ss_conf 7658999999999973997886889999999728
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~ 328 (354)
+...-...||+.|-+++||.+.|+..|.++-...
T Consensus 109 ~~~~d~~~iRr~av~~~iP~~T~~~tA~~~~~~l 142 (143)
T 2yvq_A 109 KFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAV 142 (143)
T ss_dssp GGHHHHHHHHHHHHHTTCCEECSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
T ss_conf 6556579999999976999885899999999975
No 21
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:939-1058)
Probab=59.19 E-value=9.9 Score=17.82 Aligned_cols=34 Identities=6% Similarity=-0.113 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCC
Q ss_conf 6589999999999739978868899999997288
Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 (354)
Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ 329 (354)
...-...||+.|-+++||.+.|...|.++-...|
T Consensus 84 ~~~~g~~iRr~av~~~IP~~T~i~ta~~~~~~le 117 (120)
T 1a9x_A 84 AIEDSRVIRRSALQYKVHYDTTLNGGFATAMALN 117 (120)
T ss_dssp HHHHTHHHHHHHHHTTCEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHH
T ss_conf 6675499999999709999977999999999998
No 22
>>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:1-182)
Probab=58.65 E-value=12 Score=17.21 Aligned_cols=36 Identities=6% Similarity=-0.179 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHC-CCCEEECHHHHHHHHHHCCCC
Q ss_conf 658999999999973-997886889999999728898
Q gi|254780690|r 296 QNLIAKKMRKIAYEH-NIPIFEEPSLARSLFKQVPIN 331 (354)
Q Consensus 296 ~~~~A~~Ir~~A~~~-~Vpive~~~LAR~Ly~~~~ig 331 (354)
...-...||+.|-++ |||++-++..|+++-...+..
T Consensus 106 ~~~dg~~IRr~Ai~~~~Vp~~T~~~~a~a~i~al~~~ 142 (182)
T 1zcz_A 106 DIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDDEE 142 (182)
T ss_dssp CSHHHHHHHHHHHTTTTCEEECSHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCHHH
T ss_conf 6586078799998548502564001245553011278
No 23
>>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:69-171)
Probab=55.88 E-value=12 Score=17.16 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHH-HHHHHCCCCCEEEEC------CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 999999999998-898607768699873------5530788897688888888998076589999999999
Q gi|254780690|r 245 RQKSIARSRIRH-KMMEATSRATIIITN------PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 (354)
Q Consensus 245 ~~r~~~re~~~~-~~~~~V~~A~vvitN------PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~ 308 (354)
.+|.++.|+++- +.+.+|..|.|-|+. |.+-+|-|+|.++.. -+..+..|+..-.
T Consensus 19 ~~~ale~eL~~ti~~i~gV~~ArV~i~~p~~~~~~~sASV~l~~~~g~~---------l~~qv~~I~~lVa 80 (103)
T 1yj7_A 19 INYLKEQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVN---------LAPSVIQIKNLVK 80 (103)
T ss_dssp HHHHHHHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCC---------CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCC---------CHHHHHHHHHHHH
T ss_conf 9999999999999816781378999957887789974289996189888---------8999999999999
No 24
>>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129)
Probab=52.48 E-value=9.3 Score=18.04 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHCCCCCEEEECCCCEEEEEEEC----------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 60776869987355307888976----------888888889980765899999999997399788688
Q gi|254780690|r 260 EATSRATIIITNPTHYALALRYI----------QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 260 ~~V~~A~vvitNPTH~AVAL~Y~----------~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
.-.+.-.++||..++.+.-.+-+ ......|-++-.|-...-..+.+.|+++++|++..+
T Consensus 43 ~~~~~~~i~i~g~~e~~~l~~l~~~~~~~~~~~~~~~~~~~iiit~~~~~~~~i~~~a~~~~iPil~t~ 111 (129)
T 1ko7_A 43 SHYASDRIQLLGTTELSFYNLLPDEERKGRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLITSK 111 (129)
T ss_dssp TTCCTTSEEEECHHHHHHHHHSCHHHHTTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEECC
T ss_pred CCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEECC
T ss_conf 566898799985899999986899999999999736799889997999998999999998198399848
No 25
>>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* (A:918-1193)
Probab=52.01 E-value=7.3 Score=18.88 Aligned_cols=88 Identities=7% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-------------CCCCEEEEE
Q ss_conf 9999999840699899999975448998999999999999999889860776869987-------------355307888
Q gi|254780690|r 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT-------------NPTHYALAL 279 (354)
Q Consensus 213 ~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit-------------NPTH~AVAL 279 (354)
..|..|-.=.|..-+|+-+.-= .++++.++...++..+++.++ .||-.|.||+ +|-|.+||+
T Consensus 23 ~vRRD~~~l~k~~~~~vl~~il-~~~~~~i~~~l~~~~~~l~~~----~v~i~dlvitk~L~k~~~~Y~~~~~phv~vA~ 97 (276)
T 2gv9_A 23 TVSGAAAALAERPAEEWLARPL-PEGLQAFGAVLVDAHRRITDP----ERDIQDFVLTAELSRHPRAYTNKRLAHLTVYY 97 (276)
T ss_dssp HHHHHHHHGGGSCHHHHHHSCC-CGGGHHHHHHHHHHHHHHHSS----CSCCGGGCBCC---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHCC----CCCHHHEEEEEEECCCHHHCCCCCCHHHHHHH
T ss_conf 8889999999876666531122-035678999999999886438----96789979998833785664688823999999
Q ss_pred EECC--C-----CCCCCEEEEECCCHHHHHHHH
Q ss_conf 9768--8-----888888998076589999999
Q gi|254780690|r 280 RYIQ--T-----ENDAPVLVAKGQNLIAKKMRK 305 (354)
Q Consensus 280 ~Y~~--~-----~~~aP~vvaKG~~~~A~~Ir~ 305 (354)
|... + .+..|.|+++|.+....+-+.
T Consensus 98 r~~~~~g~~~~~GdrI~YVi~~~~~~~~~~~~~ 130 (276)
T 2gv9_A 98 KLMARRAQVPSIKDRIPYVIVAQTREVEETVAR 130 (276)
T ss_dssp ----------CCTTTSCBEEBCC----------
T ss_pred HHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 998548989999899989999788765542111
No 26
>>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:393-630)
Probab=48.47 E-value=17 Score=16.04 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHCCCHHHHHHHHHHCC---------CCHHHHHHHHHH
Q ss_conf 840699899999975448---------998999999999
Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSY---------GNPIIKNRQKSI 249 (354)
Q Consensus 220 k~lkMskqEvK~E~K~~E---------GdP~iK~~~r~~ 249 (354)
.++|+|.+|++++.|+.- =||.-++..+-.
T Consensus 2 ~~~r~tP~e~r~~f~~~gw~~VvAfqtrnP~Hr~He~l~ 40 (238)
T 1x6v_B 2 DQYRLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLM 40 (238)
T ss_dssp GGGCCCHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 332369899999987428764035404899976789999
No 27
>>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129)
Probab=47.70 E-value=8.6 Score=18.32 Aligned_cols=56 Identities=9% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHCCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEE
Q ss_conf 86077686998---735530788897688888888998076---58999999999973997886
Q gi|254780690|r 259 MEATSRATIII---TNPTHYALALRYIQTENDAPVLVAKGQ---NLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 259 ~~~V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaKG~---~~~A~~Ir~~A~~~~Vpive 316 (354)
+..-++.|+|+ .+++|+.++.+- -+.+.|+++.|-. ...+.++.+.|+++|++++-
T Consensus 66 ~~~~~~~D~v~i~tp~~~~~~~~~~a--~~~g~~v~~ekP~~~~~~~~~~l~~~a~~~g~~vvg 127 (129)
T 2yv2_A 66 LAEHPEINTSIVFVPAPFAPDAVYEA--VDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIG 127 (129)
T ss_dssp HHHCTTCCEEEECCCGGGHHHHHHHH--HHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHH--HHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 41688753899941643208899999--867987898426787603579999753346428976
No 28
>>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* (A:1-207)
Probab=45.96 E-value=12 Score=17.17 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=44.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC--CCCEEEEEEECCCCCCCC-----------------EEEE
Q ss_conf 754489989999999999999998898607768699873--553078889768888888-----------------8998
Q gi|254780690|r 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN--PTHYALALRYIQTENDAP-----------------VLVA 293 (354)
Q Consensus 233 ~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN--PTH~AVAL~Y~~~~~~aP-----------------~vva 293 (354)
-+.....+.....++.........-. .--.++.+.+- =++..-...++......+ .+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 180 (207)
T 2der_A 103 KAGRTPNPDILCNKEIKFKAFLEFAA--EDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLF 180 (207)
T ss_dssp HTTCCCCHHHHHHHHTTTTHHHHHHH--HTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEEC
T ss_pred HCCCCCCCCHHCCCHHHHHHHHHHHH--HHCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCHHHHHCEEC
T ss_conf 62257662221053012457999999--7579987742356788658996678860575557315877411544202784
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 07658999999999973997886889
Q gi|254780690|r 294 KGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 294 KG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
==.+.--..|+++++++|||++++|+
T Consensus 181 Pl~~~~k~di~~~~~~~gip~~~~p~ 206 (207)
T 2der_A 181 PVGELEKPQVRKIAEDLGLVTAKKKD 206 (207)
T ss_dssp CGGGSCHHHHHHHHHHTTCC------
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 43247506899988775995555333
No 29
>>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} (A:28-260)
Probab=44.98 E-value=19 Score=15.65 Aligned_cols=97 Identities=14% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH--------------HHHHHHHCCCCCEEEECCCCEEE----
Q ss_conf 69989999997544-------899899999999999999--------------98898607768699873553078----
Q gi|254780690|r 223 KMSKQEIKDEIKQS-------YGNPIIKNRQKSIARSRI--------------RHKMMEATSRATIIITNPTHYAL---- 277 (354)
Q Consensus 223 kMskqEvK~E~K~~-------EGdP~iK~~~r~~~re~~--------------~~~~~~~V~~A~vvitNPTH~AV---- 277 (354)
|-+++|+++..++. .++|.+..=+++++.-.- .--...-.+..+||+.+|+|...
T Consensus 1 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~ia~~~g~e~~i~~~sgt~a~~~al~~l~~~~~vi~~~~~~~~~~~~~ 80 (233)
T 2po3_A 1 RIDRARLYERLDRALDSQWLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHAL 80 (233)
T ss_dssp CCCHHHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCEEECCHHHH
T ss_conf 99789999999999966986789978999999999997839699966789999999997599897998422240555676
Q ss_pred --------EEEECCCCCCC------------CEE----EEECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf --------88976888888------------889----9807658999999999973997886889
Q gi|254780690|r 278 --------ALRYIQTENDA------------PVL----VAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 278 --------AL~Y~~~~~~a------------P~v----vaKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
-+..+++.... +.+ -..|.-.--.+|.++|+++|+++++|-.
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~a~~~g~~li~D~~ 146 (233)
T 2po3_A 81 RWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAA 146 (233)
T ss_dssp HHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 531112001343333235787774020011333332313568653333001122115724003420
No 30
>>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:1-116)
Probab=44.07 E-value=19 Score=15.55 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 9999999739978868899999997
Q gi|254780690|r 302 KMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 302 ~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
-+...|+++||||+.++.|+-.+++
T Consensus 92 p~~~~a~~~gi~i~~e~El~~~~~K 116 (116)
T 1p3d_A 92 PELVTSKQKRIPVIQRAQXLAEIXR 116 (116)
T ss_dssp HHHHHHHHTTCCEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHHH
T ss_conf 9999999869969759999876542
No 31
>>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} (A:1-126,A:262-319)
Probab=42.96 E-value=6.4 Score=19.31 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCCEEEC
Q ss_conf 77686998---73553078889768888888899807---6589999999999739978868
Q gi|254780690|r 262 TSRATIII---TNPTHYALALRYIQTENDAPVLVAKG---QNLIAKKMRKIAYEHNIPIFEE 317 (354)
Q Consensus 262 V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaKG---~~~~A~~Ir~~A~~~~Vpive~ 317 (354)
.++.|+|+ -|.+||.++...- +.+.|+++-|= .-..+.+|.+.|+++++++.-.
T Consensus 63 ~~~~DaV~I~tp~~~H~e~a~~aL--~~GkhVlvEKPla~s~~ea~~L~~lA~k~gv~l~Vg 122 (184)
T 1tlt_A 63 AASCDAVFVHSSTASHFDVVSTLL--NAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG 122 (184)
T ss_dssp HTTCSEEEECSCTTHHHHHHHHHH--HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHCCCCCHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf 404431123432100012332233--322233303342001232023221222445237886
No 32
>>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-113)
Probab=39.16 E-value=23 Score=15.00 Aligned_cols=26 Identities=19% Similarity=0.131 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCCEEECHHHHHHHHHH
Q ss_conf 99999997399788688999999972
Q gi|254780690|r 302 KMRKIAYEHNIPIFEEPSLARSLFKQ 327 (354)
Q Consensus 302 ~Ir~~A~~~~Vpive~~~LAR~Ly~~ 327 (354)
-+.+.|++.|+||+..+.|+-.+.+.
T Consensus 86 p~~~~a~~~gi~i~~e~el~~~~~~~ 111 (113)
T 1j6u_A 86 PEIVRARXERVPIENRLHYFRDTLKR 111 (113)
T ss_dssp HHHHHHHHTTCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHHHH
T ss_conf 99999998599786399999755653
No 33
>>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:144-364)
Probab=38.86 E-value=23 Score=14.97 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHCCCHHHHHHHHHHC---------CCCHHHHHHHHHH
Q ss_conf 84069989999997544---------8998999999999
Q gi|254780690|r 220 SKLKMSKQEIKDEIKQS---------YGNPIIKNRQKSI 249 (354)
Q Consensus 220 k~lkMskqEvK~E~K~~---------EGdP~iK~~~r~~ 249 (354)
.++|+|.+|++++.|+. -=||.-++..-++
T Consensus 2 ~~~r~tP~e~r~~~~~~gw~~VvAfqtrnPlHr~H~e~~ 40 (221)
T 3cr8_A 2 VSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEFC 40 (221)
T ss_dssp TTTBCCHHHHHHHHHHTTCCSEEEECCSSCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 131279999999998769975999842788656899999
No 34
>>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* (A:)
Probab=38.35 E-value=3.5 Score=21.38 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=18.2
Q ss_pred CCCEEEECC---CCEEEEEEECCCCCCCCEE
Q ss_conf 686998735---5307888976888888889
Q gi|254780690|r 264 RATIIITNP---THYALALRYIQTENDAPVL 291 (354)
Q Consensus 264 ~A~vvitNP---TH~AVAL~Y~~~~~~aP~v 291 (354)
++|.||-|| ||++|||+=--...+.|+|
T Consensus 78 ~~dgiIINpgAyTHtSiAl~DAl~~~~~P~V 108 (176)
T 2c4w_A 78 EYEGIIINPGAFSHTSIAIADAIMLAGKPVI 108 (176)
T ss_dssp SCCEEEEECGGGGGTCHHHHHHHHTSSSCEE
T ss_pred CCEEEEECCHHHEEEEEEHHHHHHHCCCCEE
T ss_conf 8228995553632411012878863399789
No 35
>>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} (A:)
Probab=37.12 E-value=4.4 Score=20.66 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=20.4
Q ss_pred HHHCCCCCEEEECC---CCEEEEEEECCCCCCCCEE
Q ss_conf 86077686998735---5307888976888888889
Q gi|254780690|r 259 MEATSRATIIITNP---THYALALRYIQTENDAPVL 291 (354)
Q Consensus 259 ~~~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v 291 (354)
-++-.++|-||-|| ||++|||+=--...+.|.|
T Consensus 61 ~~a~~~~dgiIiNpga~ThtS~al~DAl~~~~~P~V 96 (143)
T 1gqo_A 61 HEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVV 96 (143)
T ss_dssp HHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEE
T ss_pred HHHHCCCCEEEECCHHHHHHCEEHHHHHHHCCCCEE
T ss_conf 986036756895331344200237999985499989
No 36
>>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=36.56 E-value=13 Score=17.03 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHH-HHHHCCCC
Q ss_conf 99999999999988986077686998735530788897688888888998076589999999-99973997
Q gi|254780690|r 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK-IAYEHNIP 313 (354)
Q Consensus 244 ~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~-~A~~~~Vp 313 (354)
..-..+.++++.. +.+.-|++=++++||..+-..+-|....-+.|.++--|.-....|.|. +|+..+++
T Consensus 97 ~~N~~i~~~~~~~-~~~~~~~~iivisnpvd~~~~~~~~~sg~~~~~vig~gt~lds~R~~~~iA~~l~v~ 166 (313)
T 1hye_A 97 KTNAKIVGKYAKK-IAEICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVH 166 (313)
T ss_dssp HHHHHHHHHHHHH-HHHHCCCEEEECSSSHHHHHHHHHHHHCCCTTSEEECTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCC-HHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 8505677540353-001567508993387127889999865989857898312789999999999984998
No 37
>>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} (A:)
Probab=36.07 E-value=4.2 Score=20.82 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=14.5
Q ss_pred CCCCEEEECC---CCEEEEEE
Q ss_conf 7686998735---53078889
Q gi|254780690|r 263 SRATIIITNP---THYALALR 280 (354)
Q Consensus 263 ~~A~vvitNP---TH~AVAL~ 280 (354)
.+.|-||-|| ||++|||+
T Consensus 65 ~~~dgiIiNpaa~ThtSvAl~ 85 (149)
T 2uyg_A 65 EGFLAIVLNPGALTHYSYALL 85 (149)
T ss_dssp TTCSEEEEECGGGGGTCHHHH
T ss_pred CCEEEEEECCCHHEEECHHHH
T ss_conf 660379862640013103278
No 38
>>1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum arcticum} (A:)
Probab=35.09 E-value=24 Score=14.76 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEE-ECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHH-HHHHHCCCC
Q ss_conf 9999999988986077686998-73553078889768888888899807658999999-999973997
Q gi|254780690|r 248 SIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR-KIAYEHNIP 313 (354)
Q Consensus 248 ~~~re~~~~~~~~~V~~A~vvi-tNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir-~~A~~~~Vp 313 (354)
.+.++.+..=+..+=|++-++| +||--.-+.+-|+....+.|+++--|.-..-.|.| .+|++.+|+
T Consensus 110 ~i~~~~~~~i~~~a~~~~~viv~snPvd~~~~~~~k~sg~~~~~vig~gt~lds~R~~~~lA~~l~v~ 177 (329)
T 1b8p_A 110 QIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177 (329)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999898745797599975784278899999974999713153012489999999999983899
No 39
>>3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} (A:66-280)
Probab=35.01 E-value=19 Score=15.61 Aligned_cols=20 Identities=15% Similarity=-0.089 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCCEEECH
Q ss_conf 99999999997399788688
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~ 318 (354)
--.+|+++|++||+++++|-
T Consensus 133 ~l~~i~~~a~~~g~~li~D~ 152 (215)
T 3hvy_A 133 EIAEIIKSIREVNENVIVFV 152 (215)
T ss_dssp HHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999998568988997
No 40
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:15-99)
Probab=34.90 E-value=16 Score=16.16 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHCCCHHHHHHHHHHCCCCHH
Q ss_conf 8406998999999754489989
Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSYGNPI 241 (354)
Q Consensus 220 k~lkMskqEvK~E~K~~EGdP~ 241 (354)
....-|++|+|.=.++.+|||.
T Consensus 28 e~vm~~ReeiK~mRa~~~gdP~ 49 (85)
T 2om6_A 28 NAVIEVRNEIKKXRAQASEDPR 49 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999998999999976000288
No 41
>>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} (A:24-128,A:168-278)
Probab=34.50 E-value=18 Score=15.76 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999997544899899999999999999
Q gi|254780690|r 228 EIKDEIKQSYGNPIIKNRQKSIARSRI 254 (354)
Q Consensus 228 EvK~E~K~~EGdP~iK~~~r~~~re~~ 254 (354)
+.=+|.-+.|.||.=|....+++.-..
T Consensus 162 ~lA~~~Ae~e~d~~rk~EL~~iA~~~~ 188 (216)
T 1r9d_A 162 KKAKEIADNTSDAKRKAELNEIAKICS 188 (216)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999875538899999999999975
No 42
>>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:1-246)
Probab=33.33 E-value=26 Score=14.46 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCCEEECHHHH
Q ss_conf 9999999997399788688999
Q gi|254780690|r 300 AKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 300 A~~Ir~~A~~~~Vpive~~~LA 321 (354)
-.+|.++|+++|+++++|-..|
T Consensus 156 i~~i~~ia~~~g~~li~D~a~a 177 (246)
T 1cs1_A 156 IAKICHLAREVGAVSVVDNTFL 177 (246)
T ss_dssp HHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 7988666652486699723012
No 43
>>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:1-115)
Probab=33.09 E-value=20 Score=15.40 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=34.4
Q ss_pred HHHCCCCCEEEECCCCEEE-EEEECCCCCCCCEE--EEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 8607768699873553078-88976888888889--9807658999999999973997886
Q gi|254780690|r 259 MEATSRATIIITNPTHYAL-ALRYIQTENDAPVL--VAKGQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 259 ~~~V~~A~vvitNPTH~AV-AL~Y~~~~~~aP~v--vaKG~~~~A~~Ir~~A~~~~Vpive 316 (354)
+...-..+.|++++.+|.- +-.|.......|-+ ..+-.++++.-++-.+++|++|+.-
T Consensus 31 L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~~~~eV~~~v~~~~~~~~i~i~~ 91 (115)
T 2exr_A 31 SESLNIQGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAA 91 (115)
T ss_dssp ---CCCSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEE
T ss_pred HHHCCCCCEEEECHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7653777616448878888654757865135257996199999999999999728904999
No 44
>>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* (A:1-267)
Probab=32.66 E-value=28 Score=14.32 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 765899999999997399788688
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
|.-.-..+|+++|++||+++++|-
T Consensus 155 g~~~~~~~i~~~~~~~g~~iivD~ 178 (267)
T 3dr4_A 155 GQICDMDPILEVARRHNLLVIEDA 178 (267)
T ss_dssp GCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred CCHHCHHHHHHHHHHCCCEEEEEC
T ss_conf 771079999999998499999977
No 45
>>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} (A:1-146,A:319-398)
Probab=32.59 E-value=25 Score=14.60 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEE--C-CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCH
Q ss_conf 7686998---7355307888976888888889980--7-65899999999997399788688999999972889894898
Q gi|254780690|r 263 SRATIII---TNPTHYALALRYIQTENDAPVLVAK--G-QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 (354)
Q Consensus 263 ~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaK--G-~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~ 336 (354)
++-|+|+ -|++|+.+++.-- +.+-++++-| . .-..|.+|.+.|+++++++.-+-. |+.+.+-.==|+
T Consensus 84 ~~iD~V~I~TPn~~H~eia~~al--~aGkhVicEKPla~s~~ea~eL~~~a~~~g~~~~v~~~-----~R~~~~p~gH~e 156 (226)
T 3dty_A 84 DGIQAVSIATPNGTHYSITKAAL--EAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYG-----YADDRIGGGHPE 156 (226)
T ss_dssp TCCSEEEEESCGGGHHHHHHHHH--HTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCG-----GGTCCSCTTSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-----CCCCCCCCCCCC
T ss_conf 98408997699557656889863--35850674377325577889999987426976999742-----102103788864
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999997
Q gi|254780690|r 337 VFYKAVAQLIYKIY 350 (354)
Q Consensus 337 ~~y~aVA~il~~v~ 350 (354)
.+.+|-|.+.+-+|
T Consensus 157 g~~~af~n~y~~~~ 170 (226)
T 3dty_A 157 GLFEAWANLYYRFA 170 (226)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 06788999999999
No 46
>>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103)
Probab=31.21 E-value=12 Score=17.23 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=35.0
Q ss_pred CCCCCEEEECCCCEEEEEEECCCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 776869987355307888976888888889980-7658999999999973997886
Q gi|254780690|r 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAK-GQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 262 V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaK-G~~~~A~~Ir~~A~~~~Vpive 316 (354)
.-..+.|.++|...+.--+........|.+|.. ..-+.-.++.+.|.+|++|++-
T Consensus 19 ~~~~~~v~~d~~~~~~~~~~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~ipv~~ 74 (103)
T 1f0x_A 19 LVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILM 74 (103)
T ss_dssp HHCGGGEECCHHHHHHHHBCSSSCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEE
T ss_pred HCCCCCEECCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 60976288388899887076544677876799509999999999999987982999
No 47
>>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:387-641)
Probab=30.75 E-value=30 Score=14.03 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=22.2
Q ss_pred EEEECCCCEEEEEEECCCC-CCCCEEE--------EECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 9987355307888976888-8888899--------807658999999999973997886
Q gi|254780690|r 267 IIITNPTHYALALRYIQTE-NDAPVLV--------AKGQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 267 vvitNPTH~AVAL~Y~~~~-~~aP~vv--------aKG~~~~A~~Ir~~A~~~~Vpive 316 (354)
+|-.||+|++--+.=+++. +.+=..+ ..|.+..+..|++.|..+++|+|-
T Consensus 30 vvan~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~K~~r~i~~la~~~~iPiv~ 88 (255)
T 3k8x_A 30 VIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMI 88 (255)
T ss_dssp EEEECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99756643468655875555203444430477657168999999999997327998599
No 48
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705)
Probab=30.69 E-value=30 Score=14.05 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 9997544899899999999999999988986077686998735
Q gi|254780690|r 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 (354)
Q Consensus 230 K~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNP 272 (354)
+.|.-...||.++..+.|.+.+.+..=.....-....+++||=
T Consensus 120 ~~e~~~~~~~~~~~~~~r~l~~~~~~L~~la~~~~~~vi~tNq 162 (278)
T 3cmu_A 120 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 162 (278)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHH
T ss_conf 1220044235633178999999999984432468827761766
No 49
>>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} (A:173-396)
Probab=30.37 E-value=30 Score=13.98 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHCCCHHHHHHHHHHC---------CCCHHHHHHHHHHH
Q ss_conf 84069989999997544---------89989999999999
Q gi|254780690|r 220 SKLKMSKQEIKDEIKQS---------YGNPIIKNRQKSIA 250 (354)
Q Consensus 220 k~lkMskqEvK~E~K~~---------EGdP~iK~~~r~~~ 250 (354)
+++|+|..|+|+++|+. -=||.-++..+...
T Consensus 2 ~~~r~tP~e~r~~~~~~gw~~VvafqtrnP~Hr~He~l~~ 41 (224)
T 1jhd_A 2 PDTFRTAVEIRNEIKEHGWSKVVAFQTRNPMHRAHEELCR 41 (224)
T ss_dssp TTTBCCHHHHHHHHHHHTCSSEEEEEESSCCCHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 5552598998778886287646665326888748999999
No 50
>>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:1-105)
Probab=30.27 E-value=30 Score=13.97 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 999999973997886889999999
Q gi|254780690|r 302 KMRKIAYEHNIPIFEEPSLARSLF 325 (354)
Q Consensus 302 ~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354)
.+.+.|++.|+||+.++.|+-.|.
T Consensus 81 p~l~~A~~~gi~I~seiEl~~~l~ 104 (105)
T 3eag_A 81 DVVEAILNLGLPYISGPQWLSENV 104 (105)
T ss_dssp HHHHHHHHTTCCEEEHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEECCHHHHHHH
T ss_conf 256776523325763110556666
No 51
>>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.20A {Thermus thermophilus} (A:)
Probab=29.97 E-value=19 Score=15.56 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=64.1
Q ss_pred HHCCCHHHHHHHHHHCC--------CCHHHHHHHHHHH--HHHHHHHHH-HH--CCCCCEEEEC-CCCEEEEEEECCCCC
Q ss_conf 40699899999975448--------9989999999999--999998898-60--7768699873-553078889768888
Q gi|254780690|r 221 KLKMSKQEIKDEIKQSY--------GNPIIKNRQKSIA--RSRIRHKMM-EA--TSRATIIITN-PTHYALALRYIQTEN 286 (354)
Q Consensus 221 ~lkMskqEvK~E~K~~E--------GdP~iK~~~r~~~--re~~~~~~~-~~--V~~A~vvitN-PTH~AVAL~Y~~~~~ 286 (354)
+-.|-+.-+....-+.= .||++..+-++.. |..+--+.. .+ -+.+=+||-| ||-.--.++.-.+.-
T Consensus 72 Dv~Mv~aGI~~~~l~~~g~~v~C~i~d~~v~~~A~~~g~TRs~a~~~~a~~~~~~~~~I~vIGNAPTAL~~l~eli~~g~ 151 (218)
T 1v9c_A 72 DARMIACGLNPERLRLFGNEVVELLAHPEVVARAKATGGTRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGA 151 (218)
T ss_dssp SCHHHHHHSCHHHHGGGTCCEEEGGGCHHHHHC------CHHHHHHHHHHTTTTTSSCEEEESSCTTTTHHHHHHHHTTC
T ss_pred ECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf 25898855127667415994599705832054443125369999999985514578857996671689999999985599
Q ss_pred CCCEEEEECCCHH-HHHHHHHHHHCCCCEEECH
Q ss_conf 8888998076589-9999999997399788688
Q gi|254780690|r 287 DAPVLVAKGQNLI-AKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 287 ~aP~vvaKG~~~~-A~~Ir~~A~~~~Vpive~~ 318 (354)
.-..|++--.|.+ |..-|+.-.+.+||-+-+.
T Consensus 152 ~PalVIg~PVGFV~A~ESKe~L~~~~iP~I~~~ 184 (218)
T 1v9c_A 152 RPALVLGMPVGFVNVLEAKRALMEAPVPWIVTE 184 (218)
T ss_dssp CCSEEEECCCSSSSHHHHHHHHTTSSSCEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 860899728765575999999985899989982
No 52
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705)
Probab=29.77 E-value=16 Score=16.11 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=31.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCE
Q ss_conf 9997544899899999999999999988986077686998735530
Q gi|254780690|r 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 (354)
Q Consensus 230 K~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~ 275 (354)
+.|.....|+.++..+.|.+.+.+..-....+.....+|+||-.+.
T Consensus 116 ~~e~~~~~~~~~~~~~~r~l~~~~~~L~~la~~~~~~vi~iNq~~~ 161 (274)
T 3cmw_A 116 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 161 (274)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
T ss_conf 1000575577238899987378899998777634867998323023
No 53
>>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} (A:8-244)
Probab=29.50 E-value=30 Score=13.99 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHH--------------HHHHHHH--CCCCCEEEECCCCEE------------EEEEECCCCCC-
Q ss_conf 899899999999999999--------------9889860--776869987355307------------88897688888-
Q gi|254780690|r 237 YGNPIIKNRQKSIARSRI--------------RHKMMEA--TSRATIIITNPTHYA------------LALRYIQTEND- 287 (354)
Q Consensus 237 EGdP~iK~~~r~~~re~~--------------~~~~~~~--V~~A~vvitNPTH~A------------VAL~Y~~~~~~- 287 (354)
-++|.+..=+++++.-.. ......- -+...|++..|+|-. |-+..|++...
T Consensus 26 ~~~~~~~~l~~~la~~~~~~~~i~~~~Gt~a~~~~l~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 105 (237)
T 3frk_A 26 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNI 105 (237)
T ss_dssp SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 14989999999999986959799956799999999998178999989948972288999999869989997526886778
Q ss_pred ---------CCEEE------EECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf ---------88899------807658999999999973997886889
Q gi|254780690|r 288 ---------APVLV------AKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 288 ---------aP~vv------aKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
.+.+. .-|.=.--.+|++++++||+++++|-.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~np~g~~~~~~~i~~~~~~~g~~ii~Dea 152 (237)
T 3frk_A 106 DPSLIESAITEKTKAIIAVHLYGQPADMDEIKRIAKKYNLKLIEDAA 152 (237)
T ss_dssp CGGGTGGGCCTTEEEEEEECCTTCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred CHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECH
T ss_conf 99999754367844773255546666799999999972987999760
No 54
>>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247)
Probab=29.18 E-value=31 Score=13.92 Aligned_cols=24 Identities=13% Similarity=0.481 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 765899999999997399788688
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
|.-.--.+|+++|++||++++.|-
T Consensus 123 g~~~~~~~i~~la~~~g~~iivD~ 146 (238)
T 2fnu_A 123 GKSVEVESVQKLCKKHSLSFLSDS 146 (238)
T ss_dssp GCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCH
T ss_conf 643234532121102211110104
No 55
>>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} (A:1-133,A:305-362)
Probab=29.04 E-value=30 Score=13.97 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHCCCCCEEEE---CCCCEEEEEEECCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 860776869987---35530788897688888888998076---58999999999973997886889
Q gi|254780690|r 259 MEATSRATIIIT---NPTHYALALRYIQTENDAPVLVAKGQ---NLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 259 ~~~V~~A~vvit---NPTH~AVAL~Y~~~~~~aP~vvaKG~---~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
+-+-++-|+|+. +.+|+.++++-- +.+-++++-|=. -+.+.+|.+.|+++|+++..+-.
T Consensus 66 ll~d~~vD~V~Iatp~~~H~~~a~~al--~~GkhVl~EKPla~s~~e~~eL~~~a~~~gv~~~v~~~ 130 (191)
T 1ydw_A 66 LLEDPEIDALYVPLPTSLHVEWAIKAA--EKGKHILLEKPVAXNVTEFDKIVDACEANGVQIXDGTX 130 (191)
T ss_dssp HHHCTTCCEEEECCCGGGHHHHHHHHH--TTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCC--CCCHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 955999888997123344443222234--43300000334210036778899876313433211122
No 56
>>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} (A:61-320)
Probab=28.76 E-value=32 Score=13.79 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCCEEECHH
Q ss_conf 999999999973997886889
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~~ 319 (354)
-=.+|+++++++|+|++.|--
T Consensus 145 ~l~~i~~i~~~~g~~li~Dea 165 (260)
T 2oqx_A 145 NLKAMYSIAKKYDIPVVMDSA 165 (260)
T ss_dssp HHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999984999999554
No 57
>>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} (A:)
Probab=28.56 E-value=30 Score=13.98 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=38.2
Q ss_pred CEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECH----HHHHHHHHH
Q ss_conf 69987355307888976888888889980765899999999997399788688----999999972
Q gi|254780690|r 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP----SLARSLFKQ 327 (354)
Q Consensus 266 ~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~----~LAR~Ly~~ 327 (354)
++|||--.|.-|-+.- -+...++-++-=|-......+.+.|++.||||+.-+ ..|+.||..
T Consensus 54 ~lii~~gdR~dv~~~a-l~~~~~~~iIltg~~~~~~~v~~~a~~~~ipIl~t~~dt~~~a~~i~~~ 118 (139)
T 2ioj_A 54 AALVTGGDRSDLLLTA-LEXPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESV 118 (139)
T ss_dssp EEEEEETTCHHHHHHH-TTCTTEEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf 0799947858999999-8568961999839989899999999777982999678799999999998
No 58
>>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:)
Probab=28.49 E-value=3.2 Score=21.70 Aligned_cols=45 Identities=33% Similarity=0.487 Sum_probs=30.0
Q ss_pred HHHCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEC---HHHHHHHHHH
Q ss_conf 86077686998735---530788897688888888998076589999999999739978868---8999999972
Q gi|254780690|r 259 MEATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE---PSLARSLFKQ 327 (354)
Q Consensus 259 ~~~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~---~~LAR~Ly~~ 327 (354)
-++..++|-||-|| ||+++|| |+--+..++|+||- .+-||.=|+.
T Consensus 62 ~~a~~~~dgiIINpga~ThtSiAl------------------------~DAl~~~~~P~VEVHlSNi~aRE~fR~ 112 (154)
T 1uqr_A 62 HQAFQNTDFIIINPGAFTHTSVAI------------------------RDALLAVSIPFIEVHLSNVHAREPFRH 112 (154)
T ss_dssp HHTTTTCCEEEEECTTHHHHCHHH------------------------HHHHHHHTCCEEEEESSCGGGSCGGGS
T ss_pred HHHHCCCCEEEECCCCEEEEHHHH------------------------HHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 997528762575365405412558------------------------999987299889998178511255555
No 59
>>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:1-119)
Probab=28.47 E-value=24 Score=14.85 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=22.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 889980765899999999997399788688
Q gi|254780690|r 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
=+|+++|... -..+++.|++++||++..+
T Consensus 86 ~iIvt~~~~~-p~~l~~~a~~~~iPll~t~ 114 (119)
T 1knx_A 86 AIILTKSFTD-PTVLLQVNQTYQVPILKTD 114 (119)
T ss_dssp CEEEETTTCC-CHHHHHHGGGTCCCEEEES
T ss_pred EEEEECCCCC-CHHHHHHHHHCCCEEEECC
T ss_conf 8999895999-9999999998395399848
No 60
>>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} (A:42-284)
Probab=28.13 E-value=33 Score=13.71 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCEEECHHHH
Q ss_conf 9999999997399788688999
Q gi|254780690|r 300 AKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 300 A~~Ir~~A~~~~Vpive~~~LA 321 (354)
-.+|.++|++||++++.|-.-+
T Consensus 148 l~~i~~la~~~g~~~~vD~a~~ 169 (243)
T 3ecd_A 148 FARFRAIADSVGAKLMVDMAHI 169 (243)
T ss_dssp HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHHHHHHHHHCCEEECCHHHH
T ss_conf 8999876543233042131315
No 61
>>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} (A:1-128)
Probab=27.92 E-value=9.1 Score=18.14 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=22.7
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEE
Q ss_conf 5530788897688888888998076---5899999999997399788
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQ---NLIAKKMRKIAYEHNIPIF 315 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~---~~~A~~Ir~~A~~~~Vpiv 315 (354)
++|+-++.+.- +.+.++++.|-. .+.+.++.+.|++++++++
T Consensus 81 ~~h~~~~~~~~--~~G~~v~vekP~~~~~~e~~~l~~~a~~~g~~~i 125 (128)
T 2yv1_A 81 PFAKDAVFEAI--DAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (128)
T ss_dssp HHHHHHHHHHH--HTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHH--HCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 54605799998--6588778741677651147999998755740785
No 62
>>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:81-271)
Probab=27.87 E-value=33 Score=13.67 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHHH
Q ss_conf 765899999999997399788688999
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~LA 321 (354)
|.-.--.+++++|+++++++++|-.-+
T Consensus 107 g~~~dl~~i~~~~~~~~~~li~D~a~~ 133 (191)
T 3a2b_A 107 GDIVNLPELTSIANEFDAAVMVDDAHS 133 (191)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCCCCHHHHHHHHHHHCEEEEEECCCC
T ss_conf 876479999999997294899734110
No 63
>>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Pseudomonas paucimobilis} (B:1-192,B:247-302)
Probab=27.39 E-value=34 Score=13.61 Aligned_cols=49 Identities=12% Similarity=-0.069 Sum_probs=37.4
Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEC------HHHHHHHHHH
Q ss_conf 897688888888998076589999999999739978868------8999999972
Q gi|254780690|r 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE------PSLARSLFKQ 327 (354)
Q Consensus 279 L~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~------~~LAR~Ly~~ 327 (354)
.-|+.+..+-|..-.+|--++|.+|.+.++++|+++..+ ....--|+.-
T Consensus 82 ~~~d~~~~~~~~y~~~~d~eLA~~L~~~l~~~Gid~~~~~~~~lDHG~~VPL~fL 136 (248)
T 1b4u_B 82 KPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMI 136 (248)
T ss_dssp CBCBCSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEHHHH
T ss_conf 6766344666788898889999999999987799768646657775400349986
No 64
>>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} (A:16-117)
Probab=27.36 E-value=34 Score=13.61 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 6077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 260 ~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
....++|+||.+|. ++.+ .-+...|++.||||+.++.++-.+.+
T Consensus 59 ~~l~~~d~VV~SPg-----i~~~------------------~p~l~~a~~~gi~i~~~~e~~~~~~k 102 (102)
T 2f00_A 59 ENVRDASVVVVSSA-----ISAD------------------NPEIVAAHEARIPVIRRAEXLAELXR 102 (102)
T ss_dssp GGGTTCSEEEECTT-----CCTT------------------CHHHHHHHHTTCCEEEHHHHHHHHHT
T ss_pred HHCCCCCEEEECCC-----CCCC------------------CHHHHHHHHCCCCEEEHHHHHHHHCC
T ss_conf 88689989998998-----4998------------------99999999889969988999742224
No 65
>>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} (A:1-125)
Probab=27.06 E-value=18 Score=15.85 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCCCEEEE---CCCCEEEEEEECCCCCCCCEEEEE--CCC-HHHHHHHHHHHHCCCCEEEC
Q ss_conf 76869987---355307888976888888889980--765-89999999999739978868
Q gi|254780690|r 263 SRATIIIT---NPTHYALALRYIQTENDAPVLVAK--GQN-LIAKKMRKIAYEHNIPIFEE 317 (354)
Q Consensus 263 ~~A~vvit---NPTH~AVAL~Y~~~~~~aP~vvaK--G~~-~~A~~Ir~~A~~~~Vpive~ 317 (354)
++.|+|+. |+.|+.++.+-- +.+.|+++-| +.+ ..+.+|.+.|+++|+.+..+
T Consensus 64 ~~id~v~i~~~~~~h~~~~~~al--~~G~~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 122 (125)
T 3f4l_A 64 PDVKLVVVCTHADSHFEYAKRAL--EAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPY 122 (125)
T ss_dssp TTEEEEEECSCGGGHHHHHHHHH--HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEECCCCHHCCCHHHHHH--CCCHHHHCCCCCCHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 99889985043100000567763--210232214332101221000000002368643211
No 66
>>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:1-277)
Probab=26.87 E-value=34 Score=13.55 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCCCEEECHHHH
Q ss_conf 99999999997399788688999
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~~LA 321 (354)
--.+|.++|++||+++++|-.-+
T Consensus 158 di~~i~~~a~~~g~~livD~a~~ 180 (277)
T 2cb1_A 158 DLEALATLAEEAGVALVVDNTFG 180 (277)
T ss_dssp CHHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHHHHHHHHHHCCCEEEECCEE
T ss_conf 18888777776055514523242
No 67
>>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} (A:1-250)
Probab=26.76 E-value=29 Score=14.11 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCCCEEEECCCCEE----------EEEEECCCCCCCC-------------EEEE-----ECCCHHHHHHHHHHHHCCCC
Q ss_conf 776869987355307----------8889768888888-------------8998-----07658999999999973997
Q gi|254780690|r 262 TSRATIIITNPTHYA----------LALRYIQTENDAP-------------VLVA-----KGQNLIAKKMRKIAYEHNIP 313 (354)
Q Consensus 262 V~~A~vvitNPTH~A----------VAL~Y~~~~~~aP-------------~vva-----KG~~~~A~~Ir~~A~~~~Vp 313 (354)
=|.-.|++..|+|.. -...|+.+...-+ .+.. -|.-.--.+++++|+++++|
T Consensus 76 ~~gd~V~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~p~~~~g~~~~l~~i~~~a~~~~~~ 155 (250)
T 1b9h_A 76 GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVP 155 (250)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHCHHHCHH
T ss_conf 99995226883232001100122332211244444446785650130123320110000111134431000000000000
Q ss_pred EEECH
Q ss_conf 88688
Q gi|254780690|r 314 IFEEP 318 (354)
Q Consensus 314 ive~~ 318 (354)
++.|-
T Consensus 156 li~D~ 160 (250)
T 1b9h_A 156 LLQDA 160 (250)
T ss_dssp BCEEC
T ss_pred HCCCC
T ss_conf 00121
No 68
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404)
Probab=26.70 E-value=35 Score=13.52 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 975448998999999999999999889860776869987355
Q gi|254780690|r 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 (354)
Q Consensus 232 E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPT 273 (354)
|.-...||.++..+-|.+.+.+..=.....-.+..||+||-+
T Consensus 122 e~~~~~~~~~~~~~a~~~s~~~~~L~~la~~~~~~vi~iNQ~ 163 (281)
T 3cmu_A 122 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 163 (281)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCEEEEEECCC
T ss_conf 345876836777998889987521788601124079971422
No 69
>>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} (A:17-259)
Probab=26.43 E-value=30 Score=14.04 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCCCEEEECCCCEE----------EEEEECCCCCCC-C-------------EEE----EECCCHHHHHHHHHHHHCCCCE
Q ss_conf 76869987355307----------888976888888-8-------------899----8076589999999999739978
Q gi|254780690|r 263 SRATIIITNPTHYA----------LALRYIQTENDA-P-------------VLV----AKGQNLIAKKMRKIAYEHNIPI 314 (354)
Q Consensus 263 ~~A~vvitNPTH~A----------VAL~Y~~~~~~a-P-------------~vv----aKG~~~~A~~Ir~~A~~~~Vpi 314 (354)
|.-.|++.+|+|.+ ....|+.....- + .++ --|.-.-..+|.++|++||+++
T Consensus 62 ~Gd~Vl~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~tG~~~~l~~i~~~a~~~g~~l 141 (243)
T 1mdo_A 62 EGDEVITPSXTWVSTLNXIVLLGANPVXVDVDRDTLXVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPV 141 (243)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCB
T ss_pred CCCEEECCCCEEHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 98989579964033103653359888994143323468899999751778508970278587214889999999749769
Q ss_pred EECH
Q ss_conf 8688
Q gi|254780690|r 315 FEEP 318 (354)
Q Consensus 315 ve~~ 318 (354)
+.|-
T Consensus 142 ivD~ 145 (243)
T 1mdo_A 142 IEDA 145 (243)
T ss_dssp CEEC
T ss_pred EECC
T ss_conf 9758
No 70
>>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic protozoa, SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} (A:24-263)
Probab=26.34 E-value=35 Score=13.48 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 8999999999973997886889999999
Q gi|254780690|r 298 LIAKKMRKIAYEHNIPIFEEPSLARSLF 325 (354)
Q Consensus 298 ~~A~~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354)
+-=.+|.++|+++|++++.|-.-+--.+
T Consensus 141 ~~l~~I~~l~~~~~~~li~D~a~~~~~~ 168 (240)
T 1svv_A 141 QELEDISASCKEHGLYLFLDGARLASAL 168 (240)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf 7777788887664143112000111266
No 71
>>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} (A:)
Probab=26.25 E-value=3.7 Score=21.25 Aligned_cols=31 Identities=39% Similarity=0.468 Sum_probs=19.2
Q ss_pred HCCCCCEEEECC---CCEEEEEEECCCCCCCCEE
Q ss_conf 077686998735---5307888976888888889
Q gi|254780690|r 261 ATSRATIIITNP---THYALALRYIQTENDAPVL 291 (354)
Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v 291 (354)
+-.+.|.+|-|| ||+++||+=--...+.|+|
T Consensus 65 a~~~~dgiIINpga~ThtS~al~DAl~~~~~P~V 98 (146)
T 1h05_A 65 AADAAEPVILNAGGLTHTSVALRDACAELSAPLI 98 (146)
T ss_dssp HHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEE
T ss_pred HHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 5304672697152122244899999985499889
No 72
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1-244,A:315-356)
Probab=25.92 E-value=36 Score=13.42 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 997544899899999999999999988986077686998735
Q gi|254780690|r 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 (354)
Q Consensus 231 ~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNP 272 (354)
.|....-||.++..+.|.+.+.+..-.....-.+..+|+||-
T Consensus 128 ~e~~~~~~~~~~~~~~r~~~~~~~~L~~la~~~~~~vi~tNQ 169 (286)
T 3cmu_A 128 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 169 (286)
T ss_dssp HHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
T ss_conf 120344364036689999999999973221357458986133
No 73
>>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} (A:1-199)
Probab=25.69 E-value=15 Score=16.33 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=22.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 899807658999999999973997886889
Q gi|254780690|r 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 290 ~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
.++.-=.+.--..|+++|+++|+|++++|+
T Consensus 169 ~i~~Pl~~~~k~ei~~~~~~~glp~~~~p~ 198 (199)
T 2hma_A 169 KTXFPLGHLEKPEVRRLAEEAGLSTAKKKD 198 (199)
T ss_dssp TEECTTTTCCHHHHHHHHHHTTCTTTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEECCCCC
T ss_conf 112700036589999999860953025645
No 74
>>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} (A:)
Probab=25.63 E-value=6.2 Score=19.45 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=15.6
Q ss_pred HCCCCCEEEECC---CCEEEEEE
Q ss_conf 077686998735---53078889
Q gi|254780690|r 261 ATSRATIIITNP---THYALALR 280 (354)
Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~ 280 (354)
+-.++|-||-|| ||++|||+
T Consensus 69 a~~~~dgiIiNpga~THtSvAl~ 91 (156)
T 1gtz_A 69 ARLNHCGIVINPAAYSHTSVAIL 91 (156)
T ss_dssp HHHHCSEEEEECTTHHHHCHHHH
T ss_pred HHCCCCEEEECCHHHHHHHHHHH
T ss_conf 76257249976514411327699
No 75
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:45-79)
Probab=25.59 E-value=36 Score=13.38 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=14.4
Q ss_pred CCCCEEEECCCCEEEEEE
Q ss_conf 768699873553078889
Q gi|254780690|r 263 SRATIIITNPTHYALALR 280 (354)
Q Consensus 263 ~~A~vvitNPTH~AVAL~ 280 (354)
..|+|+|+.|.++|.--.
T Consensus 15 AGA~v~i~s~~r~al~~e 32 (35)
T 2f1r_A 15 SGADVVIASPVKLAFIRR 32 (35)
T ss_dssp HTCEEEEECSSEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHH
T ss_conf 012442011101110022
No 76
>>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:1-119)
Probab=25.28 E-value=37 Score=13.34 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 999999973997886889999999
Q gi|254780690|r 302 KMRKIAYEHNIPIFEEPSLARSLF 325 (354)
Q Consensus 302 ~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354)
.+...|++.|+||+..+.|+..+.
T Consensus 95 p~i~~a~~~gi~i~se~El~~~~~ 118 (119)
T 3hn7_A 95 DVIEYXLDTGLRYTSGPQFLSEQV 118 (119)
T ss_dssp HHHHHHHHHTCCEEEHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHH
T ss_conf 999999987997870999999998
No 77
>>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} (A:133-310)
Probab=25.19 E-value=36 Score=13.39 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.4
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 0765899999999997399788688
Q gi|254780690|r 294 KGQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 294 KG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
-|.-.-..+|.++|++|+++++.|-
T Consensus 97 ~g~~~~~~~i~~~a~~~~~~l~vD~ 121 (178)
T 3hl2_A 97 PRVPDRLEELAVICANYDIPHIVNN 121 (178)
T ss_dssp TBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred CEEECCHHHHHHHHHHHCCCEEEEC
T ss_conf 7044469999999998499689956
No 78
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:275-457)
Probab=24.63 E-value=38 Score=13.25 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHH
Q ss_conf 8888889980765899999999997399788688999
Q gi|254780690|r 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 285 ~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LA 321 (354)
...-|++++--.+..+...+++-+++|||+.+++.=|
T Consensus 127 ~~~kPi~~~~~g~~~~~~~~~~l~~~gip~f~~~~~a 163 (183)
T 2csu_A 127 NNEKPVLAXFXAGYVSEKAKELLEKNGIPTYERPEDV 163 (183)
T ss_dssp CCCCCEEEEEECTTTTHHHHHHHHTTTCCEESSHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 8999789998998651999999986899857998999
No 79
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350)
Probab=24.40 E-value=31 Score=13.91 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 7768699873553078889768888888899807658999999999973997886
Q gi|254780690|r 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 262 V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive 316 (354)
=.+.|+||.+|. +..+..+.+.|.+.+||+|-
T Consensus 60 ~~~vD~Iii~p~-----------------------~~~~~~~i~~a~~~gIPVV~ 91 (208)
T 3h75_A 60 RDKPDYLXLVNE-----------------------QYVAPQILRLSQGSGIKLFI 91 (208)
T ss_dssp SSCCSEEEEECC-----------------------SSHHHHHHHHHTTSCCEEEE
T ss_pred CCCEEEEEECCC-----------------------CCCCHHHHHHHHHCCCEEEE
T ss_conf 998699997784-----------------------20369999999977994999
No 80
>>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} (A:55-320)
Probab=24.17 E-value=38 Score=13.19 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 89999999999739978868899
Q gi|254780690|r 298 LIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 298 ~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
+--.+|++++++||++++.|---
T Consensus 150 ~~l~~i~~i~~~~gi~li~De~~ 172 (266)
T 1ax4_A 150 SNLKEVYEIAKQHGIFVVMDSAR 172 (266)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTT
T ss_pred HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99999999999819999995445
No 81
>>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, alternative splicing, mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 2vgz_A* (A:39-101,A:294-310)
Probab=24.16 E-value=38 Score=13.18 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=14.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHH
Q ss_conf 754489989999999999999
Q gi|254780690|r 233 IKQSYGNPIIKNRQKSIARSR 253 (354)
Q Consensus 233 ~K~~EGdP~iK~~~r~~~re~ 253 (354)
|=.+||.|.++..+++.++..
T Consensus 36 Yg~t~G~p~Lr~~i~~~~~r~ 56 (80)
T 2r2n_A 36 YSPSAGIPELLSWLKQLQIKL 56 (80)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 898857599999999999997
No 82
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87)
Probab=23.65 E-value=39 Score=13.11 Aligned_cols=52 Identities=8% Similarity=-0.082 Sum_probs=30.0
Q ss_pred CCEEEECCCCEEEEEEECCCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 869987355307888976888888889980-7658999999999973997886
Q gi|254780690|r 265 ATIIITNPTHYALALRYIQTENDAPVLVAK-GQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 265 A~vvitNPTH~AVAL~Y~~~~~~aP~vvaK-G~~~~A~~Ir~~A~~~~Vpive 316 (354)
..++-+.|..-.---.|......-|..|.. +.-+.-.++.++|.+|++|++-
T Consensus 6 ~~~~~~d~~~~~~~~~~~~~~~~~P~~vv~P~s~~eV~~iv~~a~~~~~~v~~ 58 (87)
T 3js8_A 6 NNFPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRA 58 (87)
T ss_dssp SSCCTTSCCEEEEEECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 98999961345554131468556888899469999999999999987980999
No 83
>>2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens} (A:)
Probab=23.52 E-value=32 Score=13.78 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 9999999840699899999975448
Q gi|254780690|r 213 WSYHQWYSKLKMSKQEIKDEIKQSY 237 (354)
Q Consensus 213 ~qr~~~~k~lkMskqEvK~E~K~~E 237 (354)
|.+++-..=.-|||+|..+||=+.|
T Consensus 19 YEr~h~E~L~~mSK~eLvqEyleLE 43 (107)
T 2gd7_A 19 YERYHTESLQNMSKQELIKEYLELE 43 (107)
T ss_dssp CCCTTHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999997346999999999999
No 84
>>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* (A:)
Probab=23.43 E-value=37 Score=13.32 Aligned_cols=115 Identities=10% Similarity=-0.048 Sum_probs=68.8
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHH
Q ss_conf 40699899999975448998999999999999999889860776869987355307888976888888889980765899
Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 (354)
Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A 300 (354)
...+.....-..+.+.+|=++...+.+++.+.... .+.+.+.-.++-.... .....-..++-...+.-.
T Consensus 250 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 318 (390)
T 3b8x_A 250 NVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD--KFKDHPYLDVQQETGE---------SSWFGFSFIIKKDSGVIR 318 (390)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCSSEEECCCCSB---------CCCCEEEEEECTTSCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCC---------CCCCCCCHHHCCCCHHHH
T ss_conf 67986452999999999888888888776434442--2200121111245765---------443210000102455569
Q ss_pred HHHHHHHHHCCCCEEE----------------------CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHH
Q ss_conf 9999999973997886----------------------889999999728---898948989999999999
Q gi|254780690|r 301 KKMRKIAYEHNIPIFE----------------------EPSLARSLFKQV---PINSAIPPVFYKAVAQLI 346 (354)
Q Consensus 301 ~~Ir~~A~~~~Vpive----------------------~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il 346 (354)
..+.+.-.+.+|.+.. ..|-|..+++++ .++.+..+|..+.++++|
T Consensus 319 ~~~~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrls~~~~~t~edid~~~~al 389 (390)
T 3b8x_A 319 KQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEECCCCHHHCCHHHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999999879975741665332177888730867668998999998398988589988999999999862
No 85
>>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} (A:1-120,A:228-253)
Probab=23.12 E-value=21 Score=15.32 Aligned_cols=53 Identities=8% Similarity=0.174 Sum_probs=32.8
Q ss_pred HCCCCCEEEE---CCCCEEEEEEECCCCCCCCEEEEECC----CHHHHHHHHHHHHCCCCEE
Q ss_conf 0776869987---35530788897688888888998076----5899999999997399788
Q gi|254780690|r 261 ATSRATIIIT---NPTHYALALRYIQTENDAPVLVAKGQ----NLIAKKMRKIAYEHNIPIF 315 (354)
Q Consensus 261 ~V~~A~vvit---NPTH~AVAL~Y~~~~~~aP~vvaKG~----~~~A~~Ir~~A~~~~Vpiv 315 (354)
+-++.|+|+. |++|+..+.+.- +.+.++++-|=. .+.+.++.+.|+++|+.+.
T Consensus 57 ~~~~iD~Vii~t~~~~h~~~~~~al--~~Gk~Vl~EKP~a~~~~e~~~~L~~~a~~~g~~~~ 116 (146)
T 1j5p_A 57 VPSDVSTVVECASPEAVKEYSLQIL--KNPVNYIIISTSAFADEVFRERFFSELKNSPARVF 116 (146)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHT--TSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEE
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 6679989998588489999999999--75997999705303572189999999997299189
No 86
>>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} (A:)
Probab=22.99 E-value=40 Score=13.02 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCHHHH
Q ss_conf 999998406998999
Q gi|254780690|r 215 YHQWYSKLKMSKQEI 229 (354)
Q Consensus 215 r~~~~k~lkMskqEv 229 (354)
||++..++.+|-+-+
T Consensus 237 wkk~~~~~~~~~en~ 251 (273)
T 1scf_A 237 WKKRQPSLTRAVENI 251 (273)
T ss_dssp ---------------
T ss_pred EECCCCCCCCCCCCC
T ss_conf 001267765333441
No 87
>>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} (A:)
Probab=22.72 E-value=41 Score=12.98 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCCEEEECCCCEEEEEEECCCCCCCCE-EEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 686998735530788897688888888-99807658999999999973997886
Q gi|254780690|r 264 RATIIITNPTHYALALRYIQTENDAPV-LVAKGQNLIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~-vvaKG~~~~A~~Ir~~A~~~~Vpive 316 (354)
.+.++|.|+..+-..-+..++.-..|- .+-.|.+.....+||..+|.|+.+-.
T Consensus 23 ~v~~~i~~~~~~ll~~~~~~~~w~~PgG~ie~gEs~~~aa~RE~~EEtG~~~~~ 76 (153)
T 3eds_A 23 SVAAVIKNEQGEILFQYPGGEYWSLPAGAIELGETPEEAVVREVWEETGLKVQV 76 (153)
T ss_dssp EEEEEEBCTTCCEEEECC---CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEE
T ss_pred EEEEEEEECCCEEEEEEECCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 699999989979999996999599982423699798999889999985925674
No 88
>>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* (A:39-271)
Probab=22.63 E-value=40 Score=13.05 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHHH-------------HHHHHHH---HCCCCCEEEECCCCEE------------EEEEECCCCCC
Q ss_conf 489989999999999999-------------9988986---0776869987355307------------88897688888
Q gi|254780690|r 236 SYGNPIIKNRQKSIARSR-------------IRHKMME---ATSRATIIITNPTHYA------------LALRYIQTEND 287 (354)
Q Consensus 236 ~EGdP~iK~~~r~~~re~-------------~~~~~~~---~V~~A~vvitNPTH~A------------VAL~Y~~~~~~ 287 (354)
..++|.+..-++.+..-. +...++. .-|...+|+..|+|.. |-+..+++...
T Consensus 21 ~~~~~~~~~l~~~la~~~~~~~~i~~~~Gt~a~~~~l~~~~~~~Gd~vi~~~p~y~~~~~~~~~~g~~~v~v~~~~~~~~ 100 (233)
T 2oga_A 21 YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPT 100 (233)
T ss_dssp CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76887699999999999783959996689999999999808999896532463333333344344457531233310014
Q ss_pred CC-----------EEEE-----ECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf 88-----------8998-----0765899999999997399788688
Q gi|254780690|r 288 AP-----------VLVA-----KGQNLIAKKMRKIAYEHNIPIFEEP 318 (354)
Q Consensus 288 aP-----------~vva-----KG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354)
.. ..+. -|.-.--.+|+++|+++|+++++|-
T Consensus 101 ~d~~~~~~~~~~~~~~~~p~~~~g~~~~~~~i~~~a~~~~~~ii~D~ 147 (233)
T 2oga_A 101 LDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDA 147 (233)
T ss_dssp BCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCEECEEC
T ss_pred CCHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf 78899998716355405666358864524478887776096035134
No 89
>>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} (A:1-125)
Probab=22.63 E-value=32 Score=13.82 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHCCCCCEEE-E--CCCCEEEEEEECCCCCCCCEEEEECCC---HHHHHHHHHHHHCCCCEEE
Q ss_conf 86077686998-7--355307888976888888889980765---8999999999973997886
Q gi|254780690|r 259 MEATSRATIII-T--NPTHYALALRYIQTENDAPVLVAKGQN---LIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 259 ~~~V~~A~vvi-t--NPTH~AVAL~Y~~~~~~aP~vvaKG~~---~~A~~Ir~~A~~~~Vpive 316 (354)
+...++.|+|+ . |.+|+.++++-- ..+-++++.|-.. ..+.++++.|+++|+++..
T Consensus 60 ~~~~~~~d~v~i~~~~~~h~~~~~~al--~~gk~v~~ekP~~~~~~e~~~l~~~a~~~g~~~~v 121 (125)
T 3e18_A 60 VLADEKVDAVLIATPNDSHKELAISAL--EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMV 121 (125)
T ss_dssp HHHCTTCCEEEECSCGGGHHHHHHHHH--HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHCCCCCCEEEEECCCCCCCCCHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 955989888999466112331035554--32111002544210144410134443113433333
No 90
>>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} (A:1-168)
Probab=22.21 E-value=41 Score=12.91 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=18.6
Q ss_pred ECCCHHHHHHHHHHHHCCCCEE
Q ss_conf 0765899999999997399788
Q gi|254780690|r 294 KGQNLIAKKMRKIAYEHNIPIF 315 (354)
Q Consensus 294 KG~~~~A~~Ir~~A~~~~Vpiv 315 (354)
.-.+..+..|++.|++++||+|
T Consensus 146 ~~~~~~~~~i~~~a~~~~v~~v 167 (168)
T 1k7c_A 146 NSPTRFVEYAELAAEVAGVEYV 167 (168)
T ss_dssp CCCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 5689999999999998498685
No 91
>>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} (X:)
Probab=22.02 E-value=42 Score=12.88 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999973997886---8899999997288---98948989999999999999
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFE---EPSLARSLFKQVP---INSAIPPVFYKAVAQLIYKI 349 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~---ig~~Ip~~~y~aVA~il~~v 349 (354)
+=.-|.+.|+++++|++- .+.++|..++... .....|++.|++..+.+..-
T Consensus 122 ~Y~pl~~~Ar~~~ipvia~Nipr~~~~~v~r~G~~~~~~~~~~~~~~~~~~~~i~~~ 178 (268)
T 2g5g_X 122 DYEQFVNVVFYSKSKILGANLSRSEITSIYNGAQPLKGYVSTTNEVKKQLFDIISLS 178 (268)
T ss_dssp GTHHHHHHHHTSSCCEEEEECCHHHHHHHHTTCCCCCCSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 689999999977998784589989999998468676555568979999999999873
No 92
>>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:184-315)
Probab=21.83 E-value=42 Score=12.85 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=26.4
Q ss_pred CCCCEEEEECC---CHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 88888998076---58999999999973997886889
Q gi|254780690|r 286 NDAPVLVAKGQ---NLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 286 ~~aP~vvaKG~---~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
..-|++++=+. -..+..+++.|++.++|++..+.
T Consensus 13 A~rPvii~G~g~~~~~~~~~l~~lae~~~iPv~~t~~ 49 (132)
T 1efv_A 13 GAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRA 49 (132)
T ss_dssp GCSEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEHH
T ss_conf 5758998677617888999999999986991897474
No 93
>>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} (A:1-259)
Probab=21.62 E-value=43 Score=12.82 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 76589999999999739978868899
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
|..+-=.+|+++|+++|++++.|-.-
T Consensus 157 ~~~~~l~~i~~ia~~~g~~livD~a~ 182 (259)
T 1v72_A 157 YTLDEIEAIGDVCKSSSLGLHMDGSR 182 (259)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 44787654566777654777640100
No 94
>>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:288-339,A:498-529)
Probab=21.55 E-value=43 Score=12.81 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 89999999728898948989999999
Q gi|254780690|r 318 PSLARSLFKQVPINSAIPPVFYKAVA 343 (354)
Q Consensus 318 ~~LAR~Ly~~~~ig~~Ip~~~y~aVA 343 (354)
|..=+.+=+..+-|++||.++++..-
T Consensus 55 ~e~L~~~a~Hy~TgepiP~~l~ekl~ 80 (84)
T 2o36_A 55 QEPLLRMSRHYRTGSAVPRELLEKLI 80 (84)
T ss_dssp HHHHHHTCCCTTTCCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 78875000256778878799999999
No 95
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1056-1292,A:1363-1404)
Probab=21.49 E-value=35 Score=13.49 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=26.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 997544899899999999999999988986077686998735
Q gi|254780690|r 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 (354)
Q Consensus 231 ~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNP 272 (354)
.|.-...||.++..+.|.+.+.+..-.....-.+..+|+||=
T Consensus 121 ~e~~~~~~~~~~~~~~~~~~~~~~~L~~la~~~~i~vi~tNQ 162 (279)
T 3cmw_A 121 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 162 (279)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
T ss_conf 652475464338899999999999998777543848998667
No 96
>>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} (A:64-329)
Probab=21.47 E-value=43 Score=12.80 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 7658999999999973997886889
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
|.-.--.+|.++|+++|++++.|-.
T Consensus 152 G~~~~l~~I~~la~~~g~~v~~D~a 176 (266)
T 2a7v_A 152 ARLIDYARMREVCDEVKAHLLADMA 176 (266)
T ss_dssp CSCCCHHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 3446689999887404761882101
No 97
>>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (A:1-122)
Probab=21.43 E-value=20 Score=15.41 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEECCC---HHHHHHHHHHHHCCCCEEE
Q ss_conf 7686998---7355307888976888888889980765---8999999999973997886
Q gi|254780690|r 263 SRATIII---TNPTHYALALRYIQTENDAPVLVAKGQN---LIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 263 ~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaKG~~---~~A~~Ir~~A~~~~Vpive 316 (354)
++.|+|+ .|++|+..+.+.- +.+.|+++-|-.+ ..+.++++.|++++++++-
T Consensus 63 ~~~D~V~i~~p~~~h~~~~~~~~--~~g~~v~~ekP~~~~~~~~~~l~~~a~~~~~~~~g 120 (122)
T 2nu8_A 63 TGATASVIYVPAPFCKDSILEAI--DAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (122)
T ss_dssp HCCCEEEECCCGGGHHHHHHHHH--HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 58706998325056667788988--67998899627752788889998877634978986
No 98
>>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} (A:1-43,A:110-192)
Probab=21.23 E-value=30 Score=14.01 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=10.7
Q ss_pred HHHCCCCCEEEECCC
Q ss_conf 860776869987355
Q gi|254780690|r 259 MEATSRATIIITNPT 273 (354)
Q Consensus 259 ~~~V~~A~vvitNPT 273 (354)
-.....||+||.|-.
T Consensus 91 eeK~~~AD~VIdNng 105 (126)
T 2grj_A 91 QEDIVPQGIVVANNS 105 (126)
T ss_dssp CTTCCCCSEEEECSS
T ss_pred HHHHHHCCEEEECCC
T ss_conf 678997999998999
No 99
>>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127)
Probab=21.21 E-value=34 Score=13.61 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHCCCCCEEEE---CCCCEEEEEEECCCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCCEEEC
Q ss_conf 9860776869987---3553078889768888888899807---6589999999999739978868
Q gi|254780690|r 258 MMEATSRATIIIT---NPTHYALALRYIQTENDAPVLVAKG---QNLIAKKMRKIAYEHNIPIFEE 317 (354)
Q Consensus 258 ~~~~V~~A~vvit---NPTH~AVAL~Y~~~~~~aP~vvaKG---~~~~A~~Ir~~A~~~~Vpive~ 317 (354)
-+.+-++.|+|+. |++|+.++.+.- +.+-++++-|- .-..+.++.+.|+++|+++..+
T Consensus 61 ~~l~~~~vd~V~i~t~~~~h~~~~~~~~--~~gk~v~~EKP~~~s~~e~~~l~~~a~~~g~~~~v~ 124 (127)
T 3e82_A 61 AAVQHPDVDLVVIASPNATHAPLARLAL--NAGKHVVVDKPFTLDXQEARELIALAEEKQRLLSVF 124 (127)
T ss_dssp HHHTCTTCSEEEECSCGGGHHHHHHHHH--HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHCCCCCCEEEEECCHHHHCCCCCCCC--CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 9955999988999331332001221123--333000014453211112222210003568679999
No 100
>>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} (A:14-252)
Probab=21.20 E-value=43 Score=12.76 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 8999999999973997886889999999
Q gi|254780690|r 298 LIAKKMRKIAYEHNIPIFEEPSLARSLF 325 (354)
Q Consensus 298 ~~A~~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354)
+.=.+|.++|++++++++.|-.-+-..+
T Consensus 140 ~~l~~i~~l~~~~~~~li~D~~~~~~~~ 167 (239)
T 1jg8_A 140 ENIKEICTIAKEHGINVHIDGARIFNAS 167 (239)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTHHHHH
T ss_pred HHHHHHHHHHHHCEEEEEEECCCCCCCC
T ss_conf 8999999998752279984022102300
No 101
>>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} (A:1-127)
Probab=21.15 E-value=43 Score=12.75 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHCCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEE--CCC-HHHHHHHHHHHHCCCCEEEC
Q ss_conf 6077686998---7355307888976888888889980--765-89999999999739978868
Q gi|254780690|r 260 EATSRATIII---TNPTHYALALRYIQTENDAPVLVAK--GQN-LIAKKMRKIAYEHNIPIFEE 317 (354)
Q Consensus 260 ~~V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaK--G~~-~~A~~Ir~~A~~~~Vpive~ 317 (354)
-+-++-|+|+ .+++|+.++.+- -+.+-++++-| +.+ ..+.++++.|+++|+.+..+
T Consensus 63 l~~~~id~v~i~t~~~~h~~~~~~~--l~~gk~v~~ekP~~~~~~e~~~l~~~a~~~~~~~~v~ 124 (127)
T 3kux_A 63 FNDPSIDLIVIPTPNDTHFPLAQSA--LAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVF 124 (127)
T ss_dssp HHCSSCCEEEECSCTTTHHHHHHHH--HHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEEC
T ss_pred HCCCCCCEEEECCCHHHHHHHHHHH--HHCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 5699998899928837878888899--8739876026984112332124566787638753210
No 102
>>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} (A:1-127)
Probab=21.11 E-value=26 Score=14.51 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHCCCCCEEEE---CCCCEEEEEEECCCCCCCCEEEEECCC---HHHHHHHHHHHHCCCCEEEC
Q ss_conf 60776869987---355307888976888888889980765---89999999999739978868
Q gi|254780690|r 260 EATSRATIIIT---NPTHYALALRYIQTENDAPVLVAKGQN---LIAKKMRKIAYEHNIPIFEE 317 (354)
Q Consensus 260 ~~V~~A~vvit---NPTH~AVAL~Y~~~~~~aP~vvaKG~~---~~A~~Ir~~A~~~~Vpive~ 317 (354)
-+-++.|+|+. +++|+-++.+-- +..-|+++.|-.. ..+.++.+.|+++++++..+
T Consensus 62 ~~~~~~d~v~i~t~~~~h~~~~~~al--~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 123 (127)
T 2p2s_A 62 ITDASIDLIACAVIPCDRAELALRTL--DAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVY 123 (127)
T ss_dssp HTCTTCCEEEECSCGGGHHHHHHHHH--HTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEEC
T ss_pred HCCCCCCEEEEECCHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 54999898998422323200222222--111100024453222210366777653033323332
No 103
>>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} (A:1-128,A:240-273)
Probab=21.07 E-value=6.5 Score=19.26 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=40.3
Q ss_pred CCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEECCC--HHHHHHHHHHHHCCCCEEECHH
Q ss_conf 77686998---7355307888976888888889980765--8999999999973997886889
Q gi|254780690|r 262 TSRATIII---TNPTHYALALRYIQTENDAPVLVAKGQN--LIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 262 V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaKG~~--~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
.+..|+|+ .+.+|+..++++-. .+.++++.|... +.+.++.+.|++.++-+..|+.
T Consensus 70 ~~~~DvVii~tp~~~H~~~~~~al~--aG~~Vi~EKpa~t~~~~~~l~eaa~k~gvi~a~n~~ 130 (162)
T 1dih_A 70 KDDFDVFIDFTRPEGTLNHLAFCRQ--HGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANRM 130 (162)
T ss_dssp TTSCSEEEECSCHHHHHHHHHHHHH--TTCEEEECCCCCCHHHHHHHHHHTTTSCEEECSCTH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCHH
T ss_conf 4678889989888999999999998--199989967989999999999964788879955588
No 104
>>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276)
Probab=20.99 E-value=44 Score=12.73 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 9999999999739978868899999997
Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
--.+|.++|++||++++.|-.-|-..+.
T Consensus 147 ~i~~i~~la~~~g~~l~vD~a~a~g~~~ 174 (244)
T 2dkj_A 147 DFKAFREIADEVGAYLVVDMAHFAGLVA 174 (244)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHH
T ss_pred CHHHHHHHHHHCCCEEECCHHHHHHHHH
T ss_conf 7899998763118578712232444420
No 105
>>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} (A:1-326)
Probab=20.98 E-value=44 Score=12.73 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 76589999999999739978868899
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
|.=.--.+|.++|++||++++.|---
T Consensus 231 G~~~di~~i~~~a~~~g~~vivD~a~ 256 (326)
T 1ibj_A 231 QQISDIRKISEMAHAQGALVLVDNSI 256 (326)
T ss_dssp CCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred CCCCCHHHHHHHHCCCCCEEEEECCC
T ss_conf 44466689998742265139984664
No 106
>>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} (A:47-360)
Probab=20.95 E-value=44 Score=12.72 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 768699873553078889768888888899807658999999999973997886889
Q gi|254780690|r 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
...-|++++||+.. + .. .--..|.+++++||+|++.|-.
T Consensus 185 ~~~~v~~~~~~~~~-------g-~~----------~~l~~I~~l~~~~gi~livDaa 223 (314)
T 2z67_A 185 NRPCVLSTLTFFPP-------R-NS----------DDIVEIAKICENYDIPHIINGA 223 (314)
T ss_dssp CCEEEEEESSCCTT-------B-CC----------CCHHHHHHHHHHHTCCEEEECT
T ss_pred CEEEEEECCCCCCC-------C-EE----------CCHHHHHHHHHHCCCEEEEECC
T ss_conf 65999971487899-------6-30----------1499999999981985999766
No 107
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055)
Probab=20.73 E-value=31 Score=13.95 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9975448998999999999999999889860776869987355
Q gi|254780690|r 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 (354)
Q Consensus 231 ~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPT 273 (354)
.|.-...||.++..+-|.+.+.+..=.....-.+..+|+||=+
T Consensus 121 ~e~~~~~~~~~~~~~ar~~~~~~~~L~~la~~~~~~vi~tNQ~ 163 (279)
T 3cmw_A 121 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 163 (279)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 5555520223055433045678899864403566168874245
No 108
>>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A* (A:90-288)
Probab=20.66 E-value=44 Score=12.68 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCCEEECHHHH
Q ss_conf 899999999997399788688999
Q gi|254780690|r 298 LIAKKMRKIAYEHNIPIFEEPSLA 321 (354)
Q Consensus 298 ~~A~~Ir~~A~~~~Vpive~~~LA 321 (354)
+.-.+|.++|+++++++++|-.-+
T Consensus 106 ~~~~~i~~~a~~~~~~ii~D~a~~ 129 (199)
T 2ez2_A 106 ANMRAVRELTEAHGIKVFYDATRC 129 (199)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTH
T ss_pred HHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 999999999998698799974334
No 109
>>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125)
Probab=20.57 E-value=34 Score=13.58 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred HCCCCCEEE---ECCCCEEEEEEECCCCCCCCEEEEE--CCC-HHHHHHHHHHHHCCCCEEE
Q ss_conf 077686998---7355307888976888888889980--765-8999999999973997886
Q gi|254780690|r 261 ATSRATIII---TNPTHYALALRYIQTENDAPVLVAK--GQN-LIAKKMRKIAYEHNIPIFE 316 (354)
Q Consensus 261 ~V~~A~vvi---tNPTH~AVAL~Y~~~~~~aP~vvaK--G~~-~~A~~Ir~~A~~~~Vpive 316 (354)
+-++.|+|+ .+++|+..+.+-- +.+.++++-| +.+ +.+.++.+.|+++++.+.-
T Consensus 62 ~~~~~d~v~i~t~~~~h~~~~~~al--~~G~~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~i 121 (125)
T 3i23_A 62 TDPEIELITICTPAHTHYDLAKQAI--LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVXP 121 (125)
T ss_dssp SCTTCCEEEECSCGGGHHHHHHHHH--HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5999888998788024568999999--84990874077311344312344456535875322
No 110
>>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} (A:)
Probab=20.41 E-value=45 Score=12.64 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 99899999975448
Q gi|254780690|r 224 MSKQEIKDEIKQSY 237 (354)
Q Consensus 224 MskqEvK~E~K~~E 237 (354)
|||+++++++++.=
T Consensus 1 M~K~~lR~~~~~~r 14 (194)
T 1sou_A 1 MLKSELRKKVLHKR 14 (194)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 97899999999999
No 111
>>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A (A:)
Probab=20.22 E-value=45 Score=12.61 Aligned_cols=124 Identities=9% Similarity=0.032 Sum_probs=82.8
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHH
Q ss_conf 40699899999975448998999999999999999889860776869987355307888976888888889980765899
Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 (354)
Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A 300 (354)
...++.+..-..+-+.+|=+.+-.++++..+.... .+.+.+.-.+. .+.... ....-...++.+-.+.+...
T Consensus 288 ~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~--~L~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~ 359 (437)
T 3bb8_A 288 NLKITDMQAACGLAQLERIEEFVEKRKANFKYLKD--ALQSCADFIEL--PEATEN----SDPSWFGFPITLKEDSGVSR 359 (437)
T ss_dssp BCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGGTTTEEC--CCCCTT----EECCCSSEEEEECGGGSSCH
T ss_pred CCCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHH--HHCCCCCCCCC--CCCCCC----CCCCCCCEEEEECCCCHHHH
T ss_conf 10368777632714453023210245577789988--53034455546--655678----76554420355421243309
Q ss_pred HHHHHHHHHCCCCEE---------------------ECHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999997399788---------------------688999999972---8898948989999999999999730
Q gi|254780690|r 301 KKMRKIAYEHNIPIF---------------------EEPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK 352 (354)
Q Consensus 301 ~~Ir~~A~~~~Vpiv---------------------e~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l 352 (354)
..+.+.-.+++|.+- .+.|-|..++.. ..++.+...|.-+.+.+.|..+..+
T Consensus 360 ~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~irl~~~~~~t~edi~~ii~~l~~~~~k 435 (437)
T 3bb8_A 360 IDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGL 435 (437)
T ss_dssp HHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCEEEECCCHHHCCHHHHHCCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999987997466259714418888856987768898999998397985589999999999999999999660
No 112
>>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} (A:)
Probab=20.16 E-value=32 Score=13.82 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=11.3
Q ss_pred ECCCCEEEEEEECCCCCCCCEEEEECCCHHHHH
Q ss_conf 735530788897688888888998076589999
Q gi|254780690|r 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 (354)
Q Consensus 270 tNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~ 302 (354)
+||...-..+-|+....+.|.++.-|.-..-.|
T Consensus 123 snP~d~~~~~~~k~sg~~~~~~i~~gt~lds~R 155 (316)
T 1ldn_A 123 TNPVDILTYATWKFSGLPHERVIGSGTILDTAR 155 (316)
T ss_dssp SSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHH
T ss_conf 487527899999986879622662556276899
No 113
>>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:77-263)
Probab=20.01 E-value=46 Score=12.58 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf 7658999999999973997886889
Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPS 319 (354)
Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354)
|.-.--.+|.++|++++++++.|-.
T Consensus 106 g~~~~~~~i~~~~~~~~~~~~~D~a 130 (187)
T 1bs0_A 106 GDSAPLAEIQQVTQQHNGWLMVDDA 130 (187)
T ss_dssp CCBCCHHHHHHHHHHTTCEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7721147799998854909975031
Done!