BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
(354 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|260598364|ref|YP_003210935.1| flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
gi|260217541|emb|CBA31747.1| Flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
Length = 392
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ + E A EG P SRE + +L + + S + + L
Sbjct: 12 SDDSDDKTEAPTPHRREKAREEGQIPRSRELTSMLMLLVGVAVIWMGGSLLARQLAAMLS 71
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D +V ++ L A ++P ++ ++ + + ++ + N V
Sbjct: 72 HGL-HFDHSIINDPKLVVGQISFLIKQALVALVPLIMGVVIVALFAPMLLGGLLFNTKAV 130
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
++++ GIKRI+S +L +K+ +K +LVG + L N+ M+ IS +P S
Sbjct: 131 AFKPEKLNPLPGIKRIFSSQSLAELLKAVLKSVLVGIVTGCFLWYNWPDMMRLISESPIS 190
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V I+I++ + + D+ W KL+MS+Q+I+DE K G+P +K
Sbjct: 191 AMRNAMNLVALCCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEFKNQEGDPHVK 250
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 251 GRIRQQQREAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 310
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I EH IP+ E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 311 REIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 360
>gi|311279222|ref|YP_003941453.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
gi|308748417|gb|ADO48169.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
Length = 387
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 103/352 (29%), Positives = 190/352 (53%), Gaps = 1/352 (0%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
++N ++KTEAP+ ++++ A EG P SRE + +L + L F + +
Sbjct: 5 ADNSDSEDKTEAPTPQRLDKAREEGQIPRSRELTSLLILLVGVCVLWFGGESMARRLAAL 64
Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
L L + D + I+ + L A ++P + ++ I + ++ V +
Sbjct: 65 LSSGL-HFDHSIVNDPNLILGQIILLIKQAMLALLPLITGVVVVAIVAPMMLGGLVFSPK 123
Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
+ F +++ GIKR++S + +K+ +K +LVG + + ++ M+ IS +P
Sbjct: 124 SLAFKFDKLNPLPGIKRLFSAQSAAELLKAILKSVLVGCVAGTYVWSHWPDMMRLISESP 183
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ + +A V +++ L + + D+ W H KL+MS+Q+I+DE KQ+ G+P
Sbjct: 184 LAAMGNALNMVGLCAMLVALGVIPMVGFDVFWQIHSHIKKLRMSRQDIRDEFKQNEGDPH 243
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K R + + R+ R +MM +A +I+TNPTHY++AL+Y++ + AP +VAKG LIA
Sbjct: 244 VKGRIRQMQRAAARRRMMGDVPKADVIVTNPTHYSVALQYVEGKMSAPKVVAKGAGLIAL 303
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P+ E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 304 RIREIGQEHRVPVLEAPPLARALYRHAEIGQQIPGTLYAAVAEVLAWVWQLK 355
>gi|168238548|ref|ZP_02663606.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194734592|ref|YP_002114950.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|204931016|ref|ZP_03221842.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|194710094|gb|ACF89315.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288673|gb|EDY28048.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204320060|gb|EDZ05265.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|322616914|gb|EFY13822.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618152|gb|EFY15044.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625823|gb|EFY22642.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626275|gb|EFY23085.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632689|gb|EFY29434.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639033|gb|EFY35726.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640473|gb|EFY37126.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646018|gb|EFY42535.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649560|gb|EFY45992.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655468|gb|EFY51776.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660247|gb|EFY56485.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662928|gb|EFY59135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668113|gb|EFY64272.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674127|gb|EFY70221.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675519|gb|EFY71593.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683067|gb|EFY79083.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686761|gb|EFY82739.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195348|gb|EFZ80528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199240|gb|EFZ84335.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204035|gb|EFZ89050.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207496|gb|EFZ92444.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323217480|gb|EGA02199.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221971|gb|EGA06361.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224718|gb|EGA08987.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231502|gb|EGA15615.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323235944|gb|EGA20023.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240514|gb|EGA24557.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245406|gb|EGA29406.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323250177|gb|EGA34069.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253625|gb|EGA37453.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255054|gb|EGA38842.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260286|gb|EGA43907.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266878|gb|EGA50364.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270708|gb|EGA54149.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 383
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|16765256|ref|NP_460871.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161613526|ref|YP_001587491.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167994220|ref|ZP_02575312.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234020|ref|ZP_02659078.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168462551|ref|ZP_02696482.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168820742|ref|ZP_02832742.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445536|ref|YP_002041180.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194472731|ref|ZP_03078715.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197251527|ref|YP_002146107.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|238912509|ref|ZP_04656346.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|729522|sp|P40727|FLHB_SALTY RecName: Full=Flagellar biosynthetic protein flhB
gi|633115|dbj|BAA06902.1| flagellar protein FlhB [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16420451|gb|AAL20830.1| putative part of export apparatus for flagellar proteins
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|161362890|gb|ABX66658.1| hypothetical protein SPAB_01246 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404199|gb|ACF64421.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194459095|gb|EDX47934.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195634185|gb|EDX52537.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197215230|gb|ACH52627.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205327877|gb|EDZ14641.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331965|gb|EDZ18729.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205342676|gb|EDZ29440.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|261247084|emb|CBG24905.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993900|gb|ACY88785.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312912908|dbj|BAJ36882.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085466|emb|CBY95247.1| Flagellar biosynthetic protein flhB [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224557|gb|EFX49620.1| Flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|332988807|gb|AEF07790.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 383
Score = 378 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|161502970|ref|YP_001570082.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864317|gb|ABX20940.1| hypothetical protein SARI_01032 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 383
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTE P+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEDPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGSYLWHNWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PITAMGNALNLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYEENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|16760863|ref|NP_456480.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141445|ref|NP_804787.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163285|ref|ZP_03348995.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213426385|ref|ZP_03359135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213583527|ref|ZP_03365353.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|289824043|ref|ZP_06543641.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25322221|pir||AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503160|emb|CAD05665.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137072|gb|AAO68636.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 383
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|283832722|ref|ZP_06352463.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
29220]
gi|291072402|gb|EFE10511.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
29220]
Length = 383
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 187/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P S+E + +L + + +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG++ L N+ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPEMMRLVAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L + + D+ + + KL+MS+Q+I+DE KQS G+P
Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQDIRDEFKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + AP +VAKG +A
Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGPVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|323977935|gb|EGB73021.1| flagellar biosynthetic protein FlhB [Escherichia coli TW10509]
Length = 382
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHNIINDPNLILGQIILLIREAMLGLLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMNDVPKADVIVNNPTHYSVALQYDEHKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|167552446|ref|ZP_02346199.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168241547|ref|ZP_02666479.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259807|ref|ZP_02681780.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194451224|ref|YP_002045968.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|200389783|ref|ZP_03216394.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|207856565|ref|YP_002243216.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|194409528|gb|ACF69747.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|199602228|gb|EDZ00774.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205322918|gb|EDZ10757.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205339229|gb|EDZ25993.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205350661|gb|EDZ37292.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708368|emb|CAR32672.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 383
Score = 378 bits (970), Expect = e-103, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|62180491|ref|YP_216908.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224583582|ref|YP_002637380.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62128124|gb|AAX65827.1| putative part of export apparatus for flagellar proteins
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224468109|gb|ACN45939.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714967|gb|EFZ06538.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 383
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIRELGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|261340264|ref|ZP_05968122.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
35316]
gi|288317353|gb|EFC56291.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
35316]
Length = 382
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ KTEAP+ ++E A EG P SRE + ++ + + + +
Sbjct: 1 MAEDNDD--KTEAPTPHRLEKAREEGQVPRSRELTSLLILVVGVCIIWWGGESFARRLAG 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L +A ++P + ++ + S ++ V +
Sbjct: 59 MLSAGLR-FDHSMVNDPNLILSQIILLVKNAMIALLPLISGVVLVALVSPVMLGGLVFSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GI +++S +K+ +K L+G+ L ++ M+ IS +
Sbjct: 118 KSLQPKFSKLNPLPGIAKMFSAQTGAELVKAILKSALMGSTAGFFLWHHWPEMMRLISES 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P
Sbjct: 178 PFNAMNNAMNLVGLCALLVVLSIIPMVGFDVIFQMYSHFKKLRMSRQDIRDEYKQMEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R+ R +MME +A +I+TNPTHY++ALRY + + AP +VAKG LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|237731916|ref|ZP_04562397.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
gi|226907455|gb|EEH93373.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
Length = 383
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 188/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P S+E + +L + + +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG++ L N+ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPAMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L + + D+ + + KL+MS+Q+I+DE KQS G+P
Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHVKKLRMSRQDIRDEFKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + AP +VAKG L+A
Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|198245714|ref|YP_002215169.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197940230|gb|ACH77563.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
Length = 383
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|56413166|ref|YP_150241.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362092|ref|YP_002141729.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127423|gb|AAV76929.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093569|emb|CAR59032.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 383
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ I+ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 351
>gi|271500057|ref|YP_003333082.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
gi|270343612|gb|ACZ76377.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
Length = 383
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 183/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEAP+ ++ E A EG P S+E + ++A L L + S ++
Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGRLSD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D I+ + L A ++P L ++ +G+ ++ + +
Sbjct: 60 MMAKGLI-FDHGFINDERLIISHVGTLLEQAVLALVPILFGLVLVALGAPILLGGLIFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F +++ G+KR++S L K+ +K ++VG I L N+ +ML +S
Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTQVLAELFKAILKAVIVGLITFWFLRHNWNSMLHLVSEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A ++L + + D+ W +L+MSKQEI+DE K+ G+P
Sbjct: 179 MGMAIKDALNIAFLCCFWVILGLFPMVGFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IKNR + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG + IA
Sbjct: 239 HIKNRIRQQQRAMAQRRMMSDVPKADVIVTNPTHYAVALKYDEKKMSAPRVLAKGADRIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 QRIRELGTENRIPILEAPPLARALYRHTEIGQQIPTGLYAAVAEVLSWVYQLK 351
>gi|326622917|gb|EGE29262.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 383
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLSWVWQLK 351
>gi|301158434|emb|CBW17943.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|323130198|gb|ADX17628.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
Length = 383
Score = 376 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVIDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|197265115|ref|ZP_03165189.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197243370|gb|EDY25990.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 383
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SEDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|307131618|ref|YP_003883634.1| flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
gi|306529147|gb|ADM99077.1| Flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
Length = 383
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEAP+ ++ E A EG P SRE + ++A L L S +T
Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSRELTSVLMLIAGLAILWGSGSGMAARLTD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D I+ + L A ++P L ++ + + ++ + +
Sbjct: 60 MMAKGLI-FDHNFISDERLIISHVGSLIEQAVMALVPILFGLVLVALAAPVLLGGLIFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F +++ G+KR++S + L K+ +K ++VG I L N+ +ML +S
Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTHVLAELFKAILKAVIVGCITFWFLKHNWNSMLHLVSEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + A ++L + + D+GW +L+MSKQEI+DE K+ G+P
Sbjct: 179 LGSAIKDALNIAFLCCFWVILGLFPMVAFDVGWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG + IA
Sbjct: 239 HVKGRVRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMHAPKVLAKGADQIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGSEHRIPILEAPPLARALYRHTEIGHHIPTGLYAAVAEVLSWVYQLK 351
>gi|157145338|ref|YP_001452657.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
BAA-895]
gi|157082543|gb|ABV12221.1| hypothetical protein CKO_01078 [Citrobacter koseri ATCC BAA-895]
Length = 383
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P S+E + +L + + +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQVPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGLR-FDHSMVNDPNLILGQIILLIKEAMIALLPLITGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG++ L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLSGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHHWPEMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L + + D+ + KL+MS+++I+DE K+S G+P
Sbjct: 179 PVTAMGNALDLVGLCALLVVLGVIPMVAFDVVFQIFSHLKKLRMSRKDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG L+A
Sbjct: 239 HIKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|146312093|ref|YP_001177167.1| flagellar biosynthesis protein FlhB [Enterobacter sp. 638]
gi|145318969|gb|ABP61116.1| flagellar biosynthetic protein FlhB [Enterobacter sp. 638]
Length = 382
Score = 376 bits (965), Expect = e-102, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D D+KTEAP+ +++ A +G P SRE + ++ + + F +
Sbjct: 1 MA--DDSDDKTEAPTPHRLDKAREDGQVPRSRELTSLLILIVGVCIIWFGGGAFANRLAG 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 59 MLSAGLR-FDHSIVNDQNLILSQIILLIKNAMIALLPLISGVVLVALVSPIMLGGLIFSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GI +++S +K+ +K L+G+ L ++ M+ +S +
Sbjct: 118 KSLQPKFSKLNPFPGIAKMFSAQTGAELLKAILKSTLMGSTAGFYLWHHWPDMMRLLSES 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L I + D+ + + KL+MS+Q+++DE KQ G+P
Sbjct: 178 PLTAMRNAMDLVGFCAVLVVLSIIPMVGFDVFFQIYSHIKKLRMSRQDLRDEYKQMEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I E+ +P+ E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 298 LRIREIGSENRVPVLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|218548562|ref|YP_002382353.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ATCC
35469]
gi|218356103|emb|CAQ88720.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469]
gi|324113614|gb|EGC07589.1| flagellar biosynthetic protein FlhB [Escherichia fergusonii B253]
gi|325496979|gb|EGC94838.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ECD227]
Length = 382
Score = 375 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 186/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F + + L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSMLILLVGVCVIWFGGESLARQLAAMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ + + +
Sbjct: 62 AGL-HFDHHLINDPNLILGQIILLIKQAMMALLPLITGVVLVALISPVLLGGLIFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K LVG + L + M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGCVAGFYLWHKWPEMMRLMAQSPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNALDLVGLCALLVVLGVIPMVGFDVFYQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP ++AKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMNDVPQADVIVNNPTHYSVALQYDENKMSAPKVIAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA EH+IP E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIAAEHHIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|220934507|ref|YP_002513406.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
gi|219995817|gb|ACL72419.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
Length = 384
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 176/354 (49%), Gaps = 2/354 (0%)
Query: 1 MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+END K+E P+ K++ +A +G SRE + +LA +L + +
Sbjct: 1 MAENDDSSQEKSEQPTPKRLREAREKGQVARSRELNTTLVLLAGAGAMLVLGGGMLSRIQ 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ + + D S + +L + +++P + ++ + + +
Sbjct: 61 EMVRGSFV-LEREAIFDASTMQAMLILRISESLLMLLPLFGILLVAAVAGPIAMGGGGFS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P + +++ G+KRI+S L+ F K+ K L+ I L ++L
Sbjct: 120 GKAMAPKWNKLNPIAGLKRIFSWQGLMEFGKTLAKFALITAIAGSLLWGLSDSLLGLGYQ 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ L A + V +++ + + ++D+ + +L+M+KQ++KDE K++ G
Sbjct: 180 SLEQGLGRAAWIVGWTFLLLAASLILVALVDVPFQLWNHQKQLRMTKQQVKDEYKETEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K+R + R +MM A +A +++TNPTHYA+ALRY Q + AP +VAKG +L+
Sbjct: 240 PEVKSRIRQTQMEIARRRMMAAVPKADVVVTNPTHYAVALRYDQNGSGAPKVVAKGADLV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R+ A E +P+F P LAR++F ++ IP Y AVAQ++ +Y K
Sbjct: 300 AAEIRERAREAGVPLFPAPPLARAIFYSTRLDQEIPAGLYVAVAQVLAYVYQLK 353
>gi|170725986|ref|YP_001760012.1| flagellar biosynthesis protein FlhB [Shewanella woodyi ATCC 51908]
gi|169811333|gb|ACA85917.1| flagellar biosynthetic protein FlhB [Shewanella woodyi ATCC 51908]
Length = 377
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 169/353 (47%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE + ++ E A +G S+E + +LA + + ++ S
Sbjct: 1 MAENDSSQEKTEEATPRRREQAREKGQVARSKELGTSAVLLASAVGFVMAGPGIAKALAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ D + + + + L + ++ + + ++ ++
Sbjct: 61 IMTNLF-TIDRAQVFDTNEMFLIWKFIGLELAFPILSLIAFLAVVSFIGNIVLGGITFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S +G KR++ + LV K K +V L+ + +L +
Sbjct: 120 KAFMPKPDKMSPVKGFKRMFGVQALVELTKGIAKFSVVALAAYFLLSFYFDDILALSREH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YH+ + + I++ + V+D+ + +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNVYHSLDLLAWMFILLCSSTLLIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A
Sbjct: 240 EVKGKVRQMQREMAQRRMMSEVPNADVIVVNPEHYAVAVKYDVMKSTAPYVLAKGVDDVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH I I P LAR+++ I IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIEQEIPEGLFTAVAQVLAYVFQLR 352
>gi|127512310|ref|YP_001093507.1| flagellar biosynthesis protein FlhB [Shewanella loihica PV-4]
gi|126637605|gb|ABO23248.1| flagellar biosynthetic protein FlhB [Shewanella loihica PV-4]
Length = 377
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ND KTE + ++ E A +G S+E + +++ + S+ S
Sbjct: 1 MADNDTSQEKTEEATPRRREQAREKGQVARSKELGTSAVLMSAAVGFAVIGPSLGQSLMS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + +++++ D + + + + + + +L ++ +
Sbjct: 61 VMTKLF-TMSRQEIYDTNSLFNIWMMVFKELAIPMASFVLFLAFIAFLGNVVLGGITFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + LV K K +V + + L+ + +L +
Sbjct: 120 KAFMPKGNKMNPISGFKRMFGVQALVELTKGIAKFSVVALMAYLLLSYYFNDILTLSQGH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+Y+A + + I++ + V+D+ + +L+M+KQEIKDE K + G P
Sbjct: 180 LPGNVYNALDLLVWMFIVLCSSTVIIVVIDVPFQIWNHNKQLRMTKQEIKDEYKDTEGQP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +I+ NP HYA+A++Y T+ AP ++AKG + +A
Sbjct: 240 EVKGRVRQMQREMAQRRMMAEVPNADVIVVNPEHYAVAVKYDVTKAAAPYVLAKGVDDVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|251789159|ref|YP_003003880.1| flagellar biosynthesis protein FlhB [Dickeya zeae Ech1591]
gi|247537780|gb|ACT06401.1| flagellar biosynthetic protein FlhB [Dickeya zeae Ech1591]
Length = 383
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEAP+ ++ E A EG P S+E + ++A L L + S +T
Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGKLTD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D + + L A ++P L ++ + + ++ + +
Sbjct: 60 MMAKGLI-FDHNLISDERLFISHVGALLKQAMLAIVPILFGLVLVALAAPVLLGGLIFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F +++ G+KR++S + L K+ +K ++VG I L N+ +ML +S
Sbjct: 119 KAISFDFGKLNPLSGLKRMFSTHVLAELFKAILKAVIVGCITYWFLLHNWNSMLHLVSEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A +++ + + D+ W +L+MSKQEI+DE K+ G+P
Sbjct: 179 MGIAIKDALNIAFLCCFWVIMGLFPMVAFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R+ + +MM +A +I+TNPTHYA+AL+Y + + +AP ++AKG + +A
Sbjct: 239 HIKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMNAPKVLAKGADRVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R++ E+ +PI E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 QRIRELGAENRVPILEAPPLARALYRHTEIGQQIPAGLYAAVAEVLSWVYQLK 351
>gi|295678071|ref|YP_003606595.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
gi|295437914|gb|ADG17084.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
Length = 411
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE+ + ++++ A EG SRE S F+ + A + + +
Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFALLAAGFYGVWGMSGNIGEHLQN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D + ++ ++P L + + + + + L+
Sbjct: 60 MVRASLM-FNHASVFDTNRMLIGAGTAGREGLYALVPVLGVTGLAALLAPMALGGWQLSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ EG R++SIN + S K ++VG I ++ + L +
Sbjct: 119 KGLEPKFNRLNPIEGFGRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + M + + + LD+ + ++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LNVALANSMHLIAVCCGMTVAGMFAVAALDVPYQLWSYHKKLRMTKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIREIATENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351
>gi|209522058|ref|ZP_03270713.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
gi|209497504|gb|EDZ97704.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
Length = 411
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ KTE+ + ++++ A EG SRE S F+ + A + +
Sbjct: 1 MA-GDSDLEKTESATPRRLQKAREEGQVARSRELSTFALLAAGFYGVWGMSGSIGDHFQN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ S ++P L L + + + + +L+
Sbjct: 60 MLRASL-TFNHASTFDTSRMLIGAGAASREGLYALLPILALTGLAALLAPMALGGWLLST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ EG+ R++SIN + S K ++VG I ++ + L +
Sbjct: 119 KALEPKFSRLNPIEGLSRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + M + + L LD+ + ++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LNLALANSVHLIAVCCGMTVAGMFVLAALDVPYQLWTFHKKLRMTKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351
>gi|78064847|ref|YP_367616.1| flagellar biosynthesis protein FlhB [Burkholderia sp. 383]
gi|77965592|gb|ABB06972.1| Flagellar biosynthetic protein FlhB [Burkholderia sp. 383]
Length = 398
Score = 373 bits (959), Expect = e-101, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGGHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D + ++ SL ++P L L + + + + +++
Sbjct: 60 MLRGAF-TFDRATAFDTNRMLSAAGSASLEGFAALLPILALTGVAALLAPMALGGWLISS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|114562373|ref|YP_749886.1| flagellar biosynthesis protein FlhB [Shewanella frigidimarina NCIMB
400]
gi|114333666|gb|ABI71048.1| flagellar biosynthetic protein FlhB [Shewanella frigidimarina NCIMB
400]
Length = 377
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 172/353 (48%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D+ +TE P+SK++E + +G S+E + +LA + S+ +
Sbjct: 1 MAESDSGQERTEDPTSKRLEQSREKGQVARSKELGTAAVLLAASVGFSMTGPAIAKSLYN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S + ++ D + + + + + +I + L ++ ++
Sbjct: 61 IMKQIF-SMERDQIFDTNSMFRVWGVVGSELAGPLISFIALLAFVSFLGNIVLGGMSFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ LV K K +V L ++ +L S +
Sbjct: 120 KAFMPKGSKLNPMNGFKRMFGTQALVELTKGIAKFSVVALSAYFLLKFYFYDILTLSSDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA + + I++ + + ++D+ + +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNVYHALDLLIWMFILLCSSMLLIVIIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + + +MM A +I+ NP HYA+A++Y + + AP L+AKG + +A
Sbjct: 240 EVKGRIRQMQQEMAQRRMMTEVPNADVIVVNPEHYAVAVKYDVSRSSAPFLIAKGVDDVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA EHN+ I P LAR+++ ++ +P + AVAQ++ ++ +
Sbjct: 300 FRIREIAREHNVAIVSAPPLARAIYHTTKVDQQVPEGLFTAVAQVLAYVFQLR 352
>gi|296101781|ref|YP_003611927.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295056240|gb|ADF60978.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 382
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTEAP+ ++E A EG P SRE + ++ + + + +
Sbjct: 1 MAEENDD--KTEAPTPHRLEKAREEGQIPRSRELTSLLILIVGVCIIWWGGESLARKLAG 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L A ++P + ++ + S ++ V +
Sbjct: 59 MLSAGLR-FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALISPVMLGGLVFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GI +++S +K+ +K L+G+ L N+ M+ IS +
Sbjct: 118 KSLQPKFSKLNPLSGIAKMFSAQTGAELLKAILKAALMGSAAGFYLWHNWPEMMRLISES 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +A V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P
Sbjct: 178 PLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|302878260|ref|YP_003846824.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
ES-2]
gi|302581049|gb|ADL55060.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
ES-2]
Length = 379
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE PS ++++ A +G S E S FS +LA L F + +
Sbjct: 1 MAE-DSDLEKTEQPSQRRLDQAKEKGQVARSTELSTFSILLAGGATLWFMGASLNAHMVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L Q + ++ L LS+ P LL+ ++ +G+ LI + +
Sbjct: 60 LLHDALI-FNQDVVFKPELMIPRLYDLSMDMLITFAPVLLMMLITALGAPLILNGWLFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ GI RI S N+LV +K+ K +VG + T + + ++ S +
Sbjct: 119 EALVPQFSRMNPITGIGRIISTNSLVELVKALGKATIVGGVATWVIWHHRDDVIQLASLS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + V + I+ + + +D+ + KL M+K+EI+ E K++ GNP
Sbjct: 179 VTTAISQTGYLVCGSFLAIVSGMLLIVAIDVPFQLWSHNKKLMMTKEEIRQESKETDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+ R R +MM A A +++TNPTHY++AL+Y APV+VAKG +LIA
Sbjct: 239 EVKGRIRSMQREAARRRMMSAIPTADVVVTNPTHYSVALKYSDKGMSAPVVVAKGSHLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+PI E P LAR+L K I AIP Y AVA+++ +Y K
Sbjct: 299 HRIREIAQENNVPILEAPPLARALHKHTEIGDAIPEALYTAVAEVLAYVYQLK 351
>gi|294140216|ref|YP_003556194.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
gi|293326685|dbj|BAJ01416.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
Length = 377
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 171/353 (48%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE + +++E A +G S+E + +++ + S+ +
Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGFAMVGPSIAGSLVT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ D + +V + + + + + +LL + ++ +
Sbjct: 61 IMTTLF-TMDREQVFDTNQMVLIWSMIGRELAFPMASLMLLIALVAFIGNIVLGGITFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + LV K K ++V L+ + +L +
Sbjct: 120 KAFMPKTDKMNPMAGFKRMFGVQALVELTKGIAKFLVVALSAYFLLSFFFDEILALSRDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA + + I++ + V+D+ + +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNVYHALDLLVWMFILLCSSTILIVVIDVPFQVWNHNKQLKMTKQEVKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A
Sbjct: 240 EVKGKIRQMQREIAQKRMMSEVPNADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|83647843|ref|YP_436278.1| flagellar biosynthesis protein FlhB [Hahella chejuensis KCTC 2396]
gi|83635886|gb|ABC31853.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
KCTC 2396]
Length = 378
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 183/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END KTE P+ +KIE A EG P SRE + + +LA + LL F + ++
Sbjct: 1 MAENDTSQEKTEEPTPRKIEKAREEGQIPRSRELNTTAVLLAGAVGLLVFGTTIGKALEG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ T+ ++ D + L +L + ++P +L+ ++ + + +++
Sbjct: 61 VFRASF-TLTREEVFDAHQPMIHLGMAALDMAISLVPFMLVLLVASLLGPIALGGWMMSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R++ EG+KR++S+ +L+ K K ++VG + I L + +L S +
Sbjct: 120 KAAAPKFSRINPLEGLKRMFSLKSLMELFKGVAKTLVVGGVALIILNYSIPDLLAMGSED 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA + + + + + ++D+ + + L+M+ QEIKDE K + G P
Sbjct: 180 TMVSMAHACSLLAWSFLFLASSMILIALVDVPFQIYDNQKNLRMTMQEIKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ +A ++ITNPTHY++AL+Y + AP+++AKG + +A
Sbjct: 240 EVKRRVREVQYEMSRRRMLQDVPKADVVITNPTHYSVALKYDAKKMAAPIVLAKGADHMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H I + P L RS++ + IP Y AVAQ++ ++ +
Sbjct: 300 MKIREIANAHKIELVSAPPLTRSIYHHTEVGEEIPSGLYLAVAQVLAYVFQLR 352
>gi|157376185|ref|YP_001474785.1| flagellar biosynthesis protein FlhB [Shewanella sediminis HAW-EB3]
gi|157318559|gb|ABV37657.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
Length = 377
Score = 371 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 167/353 (47%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE + ++ E + +G S+E + ++A + ++ +
Sbjct: 1 MAENDSSQEKTEEATPRRREQSREKGQVARSKELGTSAVLMAAAVGFAMTGPSIAKALYN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L + + ++ D + + + + + ++ + + + ++ +
Sbjct: 61 IM-EMLFTLDRTQIFDTNALFLIWPVIGQQLAFPMLSFIAILTLMAFLGNIVLGGITFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + LV K K +V L+ + +L +
Sbjct: 120 KAFMPKTDKMNPINGFKRMFGVQALVELTKGIAKFSVVALSAYFLLSYYFNDILALSRDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA + + I++ + V+D+ + +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNVYHALDLLIWMFIILCSSTIIIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A
Sbjct: 240 EVKGKVRQMQREMAQRRMMGEVPNADVIVVNPDHYAVAVKYDAMKATAPFVLAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|33601532|ref|NP_889092.1| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica
RB50]
gi|33575968|emb|CAE33047.1| flagellar biosynthetic protein FlhB [Bordetella bronchiseptica
RB50]
Length = 384
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EA S +++E A EG SRE F + A + + S +T
Sbjct: 1 MAEE-SDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R +D +V H + A V+P + + + S ++ V +
Sbjct: 60 VLRRGLG-FEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F ++SL GIKR++S +V +K+ K LVG + + + ML +
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTHYA+AL+Y E AP +VAKG LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGEAGAPRVVAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351
>gi|163750537|ref|ZP_02157775.1| flagellar biosynthesis protein [Shewanella benthica KT99]
gi|161329692|gb|EDQ00681.1| flagellar biosynthesis protein [Shewanella benthica KT99]
Length = 377
Score = 369 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE + +++E A +G S+E + +++ + L S+ +
Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGLAMVGPSIASSLVT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ D + +V + ++ + + +L + ++ +
Sbjct: 61 IMTTLFTQ-DREQIFDTNQMVLVWGMIARELAFPMASLMLFIALVAFIGNILLGGITFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++++ +G+KR++ + LV K K ++V + L+ + +L +
Sbjct: 120 KAFMPKTEKMNPMKGLKRMFGVQALVELTKGIAKFLVVASSAYFILSFFFNEILALSRDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S +YHA + + I++ + V+D+ + +LKM+KQEIKDE K + G P
Sbjct: 180 LPSNVYHALDLLVWMFILLCSSTILIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A
Sbjct: 240 EVKGKIRQMQREVAQRRMMAEVPSADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH I I P LAR+++ I+ IP + A+AQ++ ++ +
Sbjct: 300 FKIREIAREHEIAIISAPPLARAIYHTTKIDQEIPEGLFTAIAQVLAYVFQLR 352
>gi|33596133|ref|NP_883776.1| flagellar biosynthesis protein FlhB [Bordetella parapertussis
12822]
gi|33573136|emb|CAE36781.1| flagellar biosynthetic protein FlhB [Bordetella parapertussis]
Length = 384
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EA S +++E A EG SRE F + A ++ + S +T
Sbjct: 1 MAEE-SDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVGVWLSGSMLYQGLTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R +D +V H + A V+P + + + S ++ V +
Sbjct: 60 VLRRGLG-FEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F ++SL GIKR++S +V +K+ K LVG + + + ML +
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351
>gi|114320141|ref|YP_741824.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226535|gb|ABI56334.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
MLHE-1]
Length = 390
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 2/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E + KTE P+ K+++DA +G P SRE + +L + +L F +
Sbjct: 1 MAEESENGQEKTEQPTPKRLQDAKKKGQIPRSRELTTTLLMLFAALGMLMFGGYMGEGIV 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L + ++ D + + +V P + L M+ + + +
Sbjct: 61 GLLEWSF-QPGREQIFDPKEPIARVHEALGRGLLIVAPFVGLMMLVALIGPVALGGWTFS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P ++++ +GIKRI+ L+ K KI++VG + + + A
Sbjct: 120 AQPMIPKPEKMNPVKGIKRIFGPKALIELAKGIAKILVVGAVAGVFFYLFQDELRSLALA 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S + HA ++ + + +D+ + KL+M++QE+KDE KQ+ G
Sbjct: 180 PLQSAMAHAIELFFIAFFVLAASLIIVVAVDVPYQLWDHQKKLRMTRQEVKDEFKQTEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K + + + R + +MME A +++TNPTHYA+AL+Y Q AP +VA G++ +
Sbjct: 240 PEVKGKIRQLQREAAQRRMMEKVPEADVVVTNPTHYAVALQYDQLRMRAPRVVALGKDQV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R+IA EH IP+FE P LAR+L+ I+ IP Y AVAQ++ IY +
Sbjct: 300 ALRIREIAGEHGIPLFEAPPLARALYHTTDIDQEIPAGLYMAVAQVLAYIYQLR 353
>gi|291613025|ref|YP_003523182.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
ES-1]
gi|291583137|gb|ADE10795.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
ES-1]
Length = 381
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 190/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE+PS ++++ A EG SRE S F+ ++A + + S
Sbjct: 1 MAEQDSDLEKTESPSQRRLDQAREEGQVARSRELSTFAVLMAGGAGIWLMGGMLSQQLIS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + +V L LS+S + +P L L + S L+ + L
Sbjct: 61 LIREGL-TLDTGLAFHSELLVPRLHDLSMSTLLVFLPLLGLLLAVAAFSPLLLNGWLFTL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F +++ GI R++S N+L+ K+ K ++VG I + + N +L +S
Sbjct: 120 KPLQPNFGKLNPITGIGRMFSTNSLMELAKAIAKAVVVGGIGALVIWHNKNAVLLLVSEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + H V ++ + + +D+ + + KLKM+K+E++ E K++ G+P
Sbjct: 180 IASAIPHLGSLVWGSFAAVMGGLLLIVAVDVPFQLWEHNKKLKMTKEEVRQESKETEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+ R R +MM +A +++TNPTHY++AL+Y ++ APV+VAKG +L+A
Sbjct: 240 QVKARVRSMQREMARRRMMAEIPKADVVVTNPTHYSVALKYSDSKMRAPVVVAKGSHLMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA EHN+PI E P LAR+L K + AIP Y AVA+++ +Y +
Sbjct: 300 AKIKEIAKEHNVPILEAPPLARALHKHCELGEAIPEALYTAVAEVLAYVYQLR 352
>gi|296157469|ref|ZP_06840304.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
gi|295892241|gb|EFG72024.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
Length = 406
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE+ + ++++ A EG SRE S F+ + A + +
Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFALLAAGFFGVWGMSGSIGEHLQG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + ++ S ++P L + + + L+
Sbjct: 60 MLRAAF-TFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ G+ +++SIN + S VK ++VG I ++ +L +
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351
>gi|157961202|ref|YP_001501236.1| flagellar biosynthesis protein FlhB [Shewanella pealeana ATCC
700345]
gi|157846202|gb|ABV86701.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
700345]
Length = 377
Score = 369 bits (947), Expect = e-100, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE +S+K++ A ++G S++ + ++A + LL ++ +
Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMTGPNIAQAMFN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + ++ ++ D + ++ + + + ++ ++ + + ++
Sbjct: 61 IMNKMY-TLSRDEIFDTNQMMNVWGVVGSELAFPLLGFIVFLALIAFAGNIALGGISFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++S G KR++ + +V K K +V + L+ +L +
Sbjct: 120 SAFMPKASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILLLSQEH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA + + I++ + ++D+ + +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNIYHALDLIVWIFILLCASTLLIVMIDVPFQIWNHAKQLKMTKQEIKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +I+ NP HYA+A++Y + AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAPFVVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|187925774|ref|YP_001897416.1| flagellar biosynthesis protein FlhB [Burkholderia phytofirmans
PsJN]
gi|187716968|gb|ACD18192.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
PsJN]
Length = 403
Score = 368 bits (946), Expect = e-100, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE+ + ++++ A EG SRE S F+ + A + +
Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFALLAAGFFGVWGMSGSIGEHLQG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L S + ++ S ++P L + + + + L+
Sbjct: 60 MLRAAF-SFDHAGAFETRRMMIGAGVASREGLYALLPILAFTGVAALFAPMALGGWQLSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ G+ +++SIN + S K ++VG I ++ +L
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALAMQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L + + M + + + +D+ + Q++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAAMDVPYQLWQFHKKLRMTKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351
>gi|253688980|ref|YP_003018170.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755558|gb|ACT13634.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 383
Score = 368 bits (944), Expect = e-100, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEAP+ +K E A EG P SRE + ++A L L +
Sbjct: 1 MAD-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDAMAGRLAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ + L A+ +IP + ++ + + L+ + +
Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMFGAVLVALSAPLLLGGVLFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L IS +
Sbjct: 119 KSLKVNFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLISES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P S L A +I++ + + D+ W KL+MSKQEI+DE KQS G+P
Sbjct: 179 PISALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPKVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +PI E P LAR+LF+ I IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEIGEHIPAALYAAVAEVLAWVYQLK 351
>gi|91792697|ref|YP_562348.1| flagellar biosynthesis protein FlhB [Shewanella denitrificans
OS217]
gi|91714699|gb|ABE54625.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
OS217]
Length = 377
Score = 368 bits (944), Expect = e-99, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE P+ +++E A +G S+E + +LA + + S+
Sbjct: 1 MAENDSSQEKTEEPTGRRLEQAREKGQIARSKELGTAAVLLASSVGFMMTGPALAKSLFR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L + + ++ D + + + + + ++ + + + ++ ++
Sbjct: 61 IMEQIL-TMERAQIFDTNSMFRVWGVIGTELAIPLLSFIGMLAVVSFLGNIVLGGINFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ LV K K +V L + +L + +
Sbjct: 120 KAFMPKGSKMNPMSGFKRMFGTQALVELTKGIAKFSVVAFSAYFLLDFYFVDILQLSNDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ YHA + + I++ + ++D+ + +LKM+KQEIKDE K + G P
Sbjct: 180 LPNNAYHALDLLVWMFILLCSSTLLIVIIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGQP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+ NP HYA+A++Y + + AP +VAKG + +A
Sbjct: 240 EVKARVRQMQREMAQKRMMAEVPKADVIVVNPEHYAVAVKYDASRSTAPFVVAKGIDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA EH++ I P LAR+++ ++ +P + AVAQ++ ++ +
Sbjct: 300 FQIRAIAREHDVAIVSAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 352
>gi|307731376|ref|YP_003908600.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
gi|307585911|gb|ADN59309.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
Length = 401
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE+ + +++E A EG SRE S F+ + A + +
Sbjct: 1 MAEE-SDLEKTESATPRRLEKAREEGQIARSRELSTFALLAAGFFGVWAMSGSIGQHLQD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + ++ S ++P L L + + + L+
Sbjct: 60 MLRTAF-TFDHATVFETRRMMTGAGTASREGLYALLPILALTGAAALLAPMALGGWQLST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ G+ +I+SIN V + S K ++VG I ++ +L +
Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPVQLVMSIAKTLVVGIIGGTAIWNRREEILALSTQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCAMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351
>gi|91785647|ref|YP_560853.1| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400]
gi|91689601|gb|ABE32801.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
Length = 406
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE+ + ++++ A EG SRE S F+ + A + +
Sbjct: 1 MAEE-SDLEKTESATPRRLQKAREEGQIVRSRELSTFALLAAGFFGVWGMSGSIGEHLQG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + ++ S ++P L + + + L+
Sbjct: 60 MLRAAF-TFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ G+ +++SIN + S VK ++VG I ++ +L +
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351
>gi|332284010|ref|YP_004415921.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
gi|330427963|gb|AEC19297.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
Length = 386
Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE S +++E A EG SRE + F + A + L + +T
Sbjct: 1 MAE-DSDLEKTEPASPRRLEKAREEGQVARSRELNTFLLLAAGVATLWLSGAGLYEGLTD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R D +V L +L A ++P + + I + + +L+
Sbjct: 60 ILRAGL-WFDLRVGRDTDVMVALAATSALEAILTLLPLFGVLVAVAILASVALGGFLLSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F+R++ +G+ R++S LV +K+ K ++G + + ++ M+ + A
Sbjct: 119 KALEPKFERLNPLKGMGRMFSAQTLVELIKTLAKASVIGIVAVMVMSHYLDQMISLMHAT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L V +I+ + + ++D W + Y K++MS++++K E K+S G+P
Sbjct: 179 VSEALTRGIGLVALCCALIVGGLILIVLIDAPWQIYSHYKKMRMSREDVKQEHKESDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +I+TNPTHYA+AL Y + AP +VAKG L+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPNADVIVTNPTHYAVALSYKDGQAGAPRVVAKGSGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +P+ P LAR+L V + IP Y AVA+++ ++ +
Sbjct: 299 ARIREVAQEHKVPMLSAPPLARALHHHVELGKEIPGDLYAAVAEVLAWVFQLR 351
>gi|227112512|ref|ZP_03826168.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 383
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTEAP+ +K E A EG P SRE + ++A L L +
Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGEAMAGRLAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ + L A +IP LL ++ + + L+ + +
Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALIPILLGAVLVALSAPLLLGGILFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K FK++ G+KR++S +L K+ +K ++VG I T L N+ +L +S
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTFFLIHNWPKILHLVSEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + A +I++ + + D+ W KL+MSKQEI+DE KQ+ G+P
Sbjct: 179 PITAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQNEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351
>gi|269103165|ref|ZP_06155862.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163063|gb|EEZ41559.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 376
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D +TE + ++ + A +G P SRE + + ++A + L++F ++ +
Sbjct: 1 MADSDD-QERTEDATPRRRQQAQEKGQVPRSRELASVAVLIAGAVGLMWFGGSLGQALAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S T+ ++ D+ + +++ + + + L+ + +
Sbjct: 60 VMSRLF-SLTREEVFDLGAMSTVISEVIWGIAAPLTLVLVFLFVAAFIGAAGLGGVRFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + + V +KS +K+ LV + + ++ +
Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGMQSWVELIKSILKVGLVSGVAYYLMYDSLDDFFQLAQES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +YHA T+ +++I + + +D+ + +Q+ +LKM+KQEIKDE K++ G P
Sbjct: 179 YPNNIYHALSTLLHFILLISCSLLVVVAIDVPFQIYQFNQQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP HY++ALRY + APV++AKG + A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHYSVALRYDPKLDSAPVVIAKGVDHTA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNI I P LAR+++ + IP + AVAQ++ ++ K
Sbjct: 299 FKIREIAKEHNIDIVPVPPLARAIYHTTELEQQIPDGLFIAVAQVLAYVFQLK 351
>gi|283785619|ref|YP_003365484.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
gi|282949073|emb|CBG88678.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
Length = 382
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTEAP+ ++E A EG P SRE + +L + + +++
Sbjct: 1 MSEENDD--KTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWIGGESLARRLSA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S I+ + L A ++P + ++ + S ++ + +
Sbjct: 59 MLSAGLR-FDHSMVNDPSLILGQIILLIKEAMIALLPLITGVVLVALISPVLLGGLIFSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S + +K+ +K LVG + + L + M+ ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQSGAELLKAVLKSTLVGGVTALYLWHKWPQMMRLMAES 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGDALDLVGLCALLVVLGVIPMVGFDVIFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R+ R +MM A +I+TNPTHY++AL+Y + + AP +VAKG L+A
Sbjct: 238 HVKGRIRQMQRAAARQRMMSDVPNADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+I E+ IP E P LAR+L++ I IP Y AVA+++ + K
Sbjct: 298 LRIREIGAENKIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVLQLK 350
>gi|206558545|ref|YP_002229305.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
J2315]
gi|198034582|emb|CAR50448.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
J2315]
Length = 399
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D ++ SL ++P L L + + + + +++
Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|33592472|ref|NP_880116.1| flagellar biosynthesis protein FlhB [Bordetella pertussis Tohama I]
gi|33572118|emb|CAE41658.1| flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I]
gi|332381889|gb|AEE66736.1| flagellar biosynthesis protein FlhB [Bordetella pertussis CS]
Length = 384
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EA S +++E A EG SRE F + A + + S +T
Sbjct: 1 MAEE-SDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R +D +V H + A V+P + + + S ++ V +
Sbjct: 60 VLRRGLG-FEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F ++SL GIKR++S +V +K+ K LVG + + + ML +
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V +I+ + + +LD+ W KL+M+K++++ E K+ G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351
>gi|91776296|ref|YP_546052.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
KT]
gi|91710283|gb|ABE50211.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
KT]
Length = 381
Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ KTE P+ ++IE A +G+ P SRE S ++A + L+ S ++ S
Sbjct: 1 MA-QDSDLEKTEQPTPRRIEKAREDGDVPRSREFSTCVVLMAGGLGLMMLGSRLNQAMLS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ L ++ D S ++ + L P +LL ++ +G+ ++ +
Sbjct: 60 NMISSLR-ISREAAFDFSLLLSKIASGVLDLLIAFAPLILLLLVVIVGAPVLVGGWNFSN 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F +++ GIK ++S N+LV +K+ +K LVGT+ + + ++ T+L +
Sbjct: 119 KAFLPKFSKLNPLNGIKNLFSKNSLVELIKAILKAALVGTVSYMVMAHDFDTLLSLPTQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K + I+ + + ++D+ + + +KLKM+K+E+K E K+S GNP
Sbjct: 179 LETGIAQVDDILIKGFLFIVSALVLVALIDVPYQRWSYTNKLKMTKEEVKQEAKESDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R R +MM +A ++ITNPTHYA+A++Y AP ++AKG + IA
Sbjct: 239 QIKGRIRQQQREMARRRMMAEIPKADVVITNPTHYAVAIKYDDQSMAAPRVIAKGADDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHN+ I E P LAR+LF + IP Y AVA+++ ++ +
Sbjct: 299 LKIREIAGEHNVAILESPKLARALFAHTELGDEIPQALYAAVAEILAYVFQLR 351
>gi|212634380|ref|YP_002310905.1| flagellar biosynthesis protein FlhB [Shewanella piezotolerans WP3]
gi|212555864|gb|ACJ28318.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
Length = 377
Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE +S+K++ A ++G S++ + ++A + L+ P I
Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLVMT-GPSIAKAMH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + T+ ++ D ++ + + + + ++ +LL + + +
Sbjct: 60 TIMTNLFTLTRDEIFDTRQMMNIWSMVGSELAAPLLGFILLLAVIAFAGNVALGGMSFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S G+KR++ + +V K K +V + L +L +
Sbjct: 120 KACMPKPSKMSPVAGLKRMFGVQAVVELTKGIAKFSVVAITAYVVLKIYLNDILMLSQDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA V + I++ + +D+ + +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNIYHALDLVSWIFILLCASTFIIVAIDVPYQIWHHAKQLKMTKQEVKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + + +MM A +I+ NP HYA+A++Y ++ AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQQEMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAAKSTAPFVVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHDVAIVTAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|73539437|ref|YP_299804.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha JMP134]
gi|72122774|gb|AAZ64960.1| Flagellar biosynthetic protein FlhB [Ralstonia eutropha JMP134]
Length = 380
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE S +++E A EG SRE + F ++ +I L S+ +
Sbjct: 1 MSDE-SDLEKTEPASPRRLEKAREEGQVVRSRELATFIMLMTGVIGLWTLGGTIGRSLDT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L D S ++ ++ + +P LLLF + + + L+ +
Sbjct: 60 VMRQSLR-FEPATAFDTSRMLSRFANVIWESLLAFMPLLLLFGVAAVAAPLLMGGWTFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F R+S G+ R++S++++ +K+ K +LVG++ + + ++A
Sbjct: 119 KALMPNFGRMSPMSGLGRMFSVHSVAELVKAIAKSLLVGSVGAWVVWHRLPDAIALMNAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L H V + + ++L + + +D+ W + + + KL+MSK+E+K E K+S G+P
Sbjct: 179 VQEALLHMLDMVLRCCVPVVLSLLLVAAIDVPWQFWEHFKKLRMSKEEVKQEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R+ R +MM+ +A +++TNPTH+A+ALRY + AP ++AKG + +A
Sbjct: 239 HIKGRIRQQQRAMARRRMMQEVPKADVVVTNPTHFAVALRYEEGRMSAPRVIAKGTDEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH IP+ P LAR+L + V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHRIPLMSAPPLARALHRHVDLGQEIPAGLYTAVAEVLAWVYQLK 351
>gi|227328329|ref|ZP_03832353.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 383
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTEAP+ +K E A EG P SRE + ++A L L +
Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGDAMAGRLAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ + L A+ +IP +L ++ + + L+ + +
Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMLGAVLVALSAPLLLGGILFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLVSEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + A +I++ + + D+ W KL+MSKQEI+DE KQS G+P
Sbjct: 179 PIAAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351
>gi|323527726|ref|YP_004229879.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
gi|323384728|gb|ADX56819.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
Length = 401
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE+ + ++++ A EG SRE S F+ + A + + +
Sbjct: 1 MAEE-SDLEKTESATPRRLQKAREEGQIVRSRELSTFALLAAGFFGVWGMSGSIGEHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + ++ S ++P L + + + L+
Sbjct: 60 MLRAAF-TFDHASAFETHRMMAGAGAASREGLYALLPILAFTGAAALLAPMALGGWQLSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ G+ +I+SIN + S K ++VG I ++ +L +
Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351
>gi|254246770|ref|ZP_04940091.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
cenocepacia PC184]
gi|124871546|gb|EAY63262.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
cenocepacia PC184]
Length = 414
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 177/350 (50%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+++ +KTEA + ++ E A EG SRE + F+ + A P + + L
Sbjct: 18 DESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLR 77
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ + D ++ SL ++P L L + + + + +++
Sbjct: 78 GAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQKTF 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F R++ G+ RI+SI + S K ++VG I I++ + +L + +
Sbjct: 137 ELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLGA 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 197 ALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366
>gi|293395574|ref|ZP_06639857.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
gi|291421893|gb|EFE95139.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
Length = 391
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ K+EAP+ ++E A EG P SRE + ++A L L S + L
Sbjct: 11 EDSDLEKSEAPTPHRVEKAREEGQIPRSRELTSILMLIAGLAILWVGGSNLARQLAQMLT 70
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + + ++ L L A ++P + ++ + + ++ + + +
Sbjct: 71 DGL-HFDHGMVNNDRQMLHQLGMLLRQAVWALLPVMAGLVLVALTAPMLLGGILFSGKSL 129
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K KR++ G+KRI+S L +K +K +LVG + + L N+ ML ++ P
Sbjct: 130 KFDLKRLNPLSGLKRIFSSQVLAELLKGVLKALLVGWVTGLFLWHNWAAMLHLVTQQPLD 189
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L +A V ++++L + + D+ + KLKM+KQ+I+DE K+ G+P +K
Sbjct: 190 ALANALQMVVFCGLLVVLGLVPMVAFDVFYQLWSHIKKLKMTKQDIRDEFKEQEGDPHVK 249
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + ++ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++
Sbjct: 250 GRIRQQQQAIARRRMMSDVPKADVIVTNPTHYAVALQYNDKQMSAPRVLAKGAGEIALRI 309
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A +H IP E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 310 RELAAQHRIPTLEAPPLARALYRHSEIGQHIPTTLYAAVAEVLAWVYQLR 359
>gi|107024383|ref|YP_622710.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia AU
1054]
gi|116688291|ref|YP_833914.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
HI2424]
gi|105894572|gb|ABF77737.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU
1054]
gi|116646380|gb|ABK07021.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
HI2424]
Length = 399
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D ++ SL ++P L L + + + + +++
Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|50120630|ref|YP_049797.1| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum
SCRI1043]
gi|49611156|emb|CAG74602.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
SCRI1043]
Length = 383
Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTEAP+ +K E A EG P SRE + ++A L L +
Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDVMAGRLAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ + L A ++P +L ++ + + ++ + +
Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALVPIMLGAVLVALSAPMLLGGILFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K FK++ G+KR++S L K+ +K ++VG I T+ L N+ +L +S
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSSQALAELFKAILKSVIVGIISTLFLIHNWPKILHLVSEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIIGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351
>gi|303240269|ref|ZP_07326788.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
CD2]
gi|302592179|gb|EFL61908.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
CD2]
Length = 400
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 1/349 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK E A EG SRE + +L I + + + ++
Sbjct: 46 DSGDKTEKATPKKREKAREEGQVLQSREMTAAIVLLCLFITVKIAGGYMYEQIYAYFKIV 105
Query: 66 LASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
A ++ L + ++ L L L ++V P + ++ GI S Q + +
Sbjct: 106 FADYSKLTDLFTVEGLIKLFIDLLLRFLKIVAPVFAVALITGIVSGYAQVGFLFTTKTLA 165
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F R++ G KRI+S+ ++ +KS +KI+++G I L + +L+ ++ + SI
Sbjct: 166 FKFSRINPLSGFKRIFSLRSVTELVKSILKIVVIGYIGYSYLADEAKNILNTMNMDVISI 225
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ T V I + + + L VLD G+ + ++ LKMSKQEIK E K++ GNP +K
Sbjct: 226 AAYICVTSINVAIRMCIAMLILGVLDYGYQWWEYEKSLKMSKQEIKQENKEAEGNPEVKA 285
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ + R +M++ +A ++ITNPTH+A+A++Y +DAP+++AKGQ+ IA +++
Sbjct: 286 KIRQKQRQIALRRMLQDIPKADVVITNPTHFAVAIKYDPKVSDAPIVIAKGQDYIALRIK 345
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA E+ + I E LAR+L+ V I IPP ++AVA+++ +Y K
Sbjct: 346 EIAKENKVEIVENKPLARTLYASVDIGERIPPELFQAVAEVLAFVYSLK 394
>gi|170731604|ref|YP_001763551.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
MC0-3]
gi|169814846|gb|ACA89429.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
MC0-3]
Length = 399
Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D ++ SL ++P L L + + + + +++
Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|170694379|ref|ZP_02885533.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
gi|170140802|gb|EDT08976.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
Length = 401
Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE+ + ++++ A EG SRE S F+ + A + + +
Sbjct: 1 MAEE-SDLEKTESATPRRLQKAREEGQIARSRELSTFALLAAGFFGVWGMSDSIGEHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + ++ S ++P L + + + + L+
Sbjct: 60 MLRAAF-TFDHAGAFETHRMMIGAGAASREGLYALLPILAVTGAAALLAPMALGGWQLST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F+R++ G+ +I+SIN + S K ++VG I ++ +L +
Sbjct: 119 KGLEPKFERLNPIAGLGKIFSINGPIQLAMSLAKTLVVGIIGGTAIWNRREEILALATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351
>gi|125973005|ref|YP_001036915.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
27405]
gi|256004802|ref|ZP_05429777.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
2360]
gi|281417216|ref|ZP_06248236.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
gi|125713230|gb|ABN51722.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
27405]
gi|255991252|gb|EEU01359.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
2360]
gi|281408618|gb|EFB38876.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
gi|316940759|gb|ADU74793.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
1313]
Length = 392
Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats.
Identities = 109/349 (31%), Positives = 178/349 (51%), Gaps = 1/349 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
KTE + +K A EG SRE + +L+ + L F + L V
Sbjct: 39 DNGEKTEKATPRKRSKAREEGQVLQSRELNSAIVLLSAFVTLRIFGQYMYEEILKCLKVA 98
Query: 66 LA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ L I + L ++ ++ P L++ ++ GIGS Q + +
Sbjct: 99 ITVYPLNDGLFTIDGLFELYGETVITFLKIATPVLMVVLIAGIGSAYAQVGFLFTTKTLG 158
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
R++ +G KRI+S+ +LV +KS +KI LVG I + +L + + S
Sbjct: 159 IKLSRINPLKGFKRIFSLKSLVELLKSIIKIALVGYIGYGYIKGEMTNVLGMMDVDVVSS 218
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
T+ I + + + V D G+ + ++ L+MSKQEIK+E K+ GNP IK+
Sbjct: 219 ASFLGSTILNAAIRMCIAFVVIGVADYGYQWWEYEKSLRMSKQEIKEENKEVEGNPEIKS 278
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R + R +M++ +A ++ITNPTHYA+A++Y E DAPV+VAKGQ+ +A +++
Sbjct: 279 RIRQKQRQMSMRRMLQDIPKADVVITNPTHYAVAIKYDPKEADAPVVVAKGQDYMALRIK 338
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA EH + I E LA++L+K V I IPP Y+AVA+++ +Y K
Sbjct: 339 EIAKEHKVEIVENKPLAQTLYKTVEIGGKIPPELYQAVAEVLAFVYSLK 387
>gi|152983829|ref|YP_001349232.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PA7]
gi|150958987|gb|ABR81012.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PA7]
Length = 378
Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + ++
Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAAAMLR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + + ++ LL A++ + P LL+ ++ I + + ++
Sbjct: 61 LMRSSFE-LSRETVLNTESMLQLLGASGYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + +L
Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + +D+ + KL M+KQE++DE K S G P
Sbjct: 180 LEQAILHSAQVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLMMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+L+AKG + +A
Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y K
Sbjct: 300 LKIREVAREHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352
>gi|254785483|ref|YP_003072912.1| flagellar biosynthesis protein FlhB [Teredinibacter turnerae T7901]
gi|237686236|gb|ACR13500.1| flagellar biosynthetic protein FlhB [Teredinibacter turnerae T7901]
Length = 377
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE + +++E A EG P SRE + + +LA I L+ F +
Sbjct: 1 MAEQDSSQEKTEEATPRRLEKAREEGQVPRSRELTTTAVLLAGTISLVLFGGVMANAQLE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + D + L A ++P + ++ I + + +
Sbjct: 61 IMRLNFDLP-REVIFDPELMFAQLGASFKEALLSLMPLFAVILVAAIAGPVALGGWLFSS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ +G+ R++S+ +L+ +KS K+ +V + + L++ +L
Sbjct: 120 KALAPKLNRMDPIKGLGRMFSMKSLIELVKSIGKVAIVVGVAFVLLSQMKTALLGLSQEG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ +++ + +DI + KLKMS+Q+I+DE+K + G P
Sbjct: 180 LEQAIIHSLTLSLWAAVLLSASTIVIAAMDIPFQIWDHSKKLKMSRQDIRDEMKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K++ + + + +++MM A A ++ITNPTHY++ALRY PV+VAKG + +A
Sbjct: 240 EVKSKIRQMQQEMAQNRMMSAVPEADVVITNPTHYSIALRYDPKTMSTPVVVAKGIDFVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E+ I + P LAR+++ + IP Y AVAQ++ ++ +
Sbjct: 300 MKIREIARENKIEFVQAPLLARAIYATTDLEDEIPEGLYVAVAQVLAYVFQLR 352
>gi|116694207|ref|YP_728418.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha H16]
gi|113528706|emb|CAJ95053.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 380
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S +++E A EG SRE + F ++A + L S+
Sbjct: 1 MSEE-SDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L D S ++ + + +P L LF + + + L+ V +
Sbjct: 60 VMQGALR-FEPATAFDTSRMLSRFAMMVWDSLLAFLPLLFLFGVAALAAPLLLGGWVFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R+S G+ R++S ++LV +K+ K +LVG++ L + ++A
Sbjct: 119 KSFAPQFSRLSPLAGLGRMFSAHSLVELLKAVAKSLLVGSVGAWVLWRRLPEAIALMNAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+S G+P
Sbjct: 179 VQEALLHMVDLVMYCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG IA
Sbjct: 239 HIKGRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351
>gi|119476304|ref|ZP_01616655.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
proteobacterium HTCC2143]
gi|119450168|gb|EAW31403.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
proteobacterium HTCC2143]
Length = 386
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END KTE + K++E + EG S+E +LA + L+ + ++
Sbjct: 1 MAENDNGQEKTEEATPKRLEKSREEGQVARSKELGTALILLAGVGGLIVYGGDFGQALMG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + D S ++ L + S+ ++P L + + + +L+
Sbjct: 61 VMRFNF-SMPRDVAFDESLMLRHLGNTSIFIIETMLPFFALIAVAAVVGPVALGGFILSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ +GIKRI+S+ +LV +KS K+++VG++ +L +LD A
Sbjct: 120 KALVPKLTRLDPIKGIKRIFSLTSLVELLKSICKVLVVGSMAYFTLRNAEMDLLDLAHAE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V ++ + + + ++D+ + KLKM+ QE+KDE+K S G P
Sbjct: 180 LQPAIVQMLTIVAWSVLAVSASMILIVLIDVPFQIFDHSKKLKMTLQEVKDEMKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MMEA A ++ITNP H+++AL+Y AP+LVAKG + +A
Sbjct: 240 EVKGRIRQLQREMAQRRMMEAVPEADVVITNPEHFSIALKYDVEGGGAPILVAKGVDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +++ I P LAR+++ I+ IP Y AVAQ++ ++ +
Sbjct: 300 IKIREIANANDVMILAAPPLARAIYFTTEIDDEIPNTLYLAVAQVLAYVFQLR 352
>gi|167623392|ref|YP_001673686.1| flagellar biosynthesis protein FlhB [Shewanella halifaxensis
HAW-EB4]
gi|167353414|gb|ABZ76027.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
HAW-EB4]
Length = 377
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 173/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE +S+K++ A ++G S+E + ++A + LL ++ +
Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMTGPDIAQAMHN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ ++ D ++ + + + ++ ++ + + ++
Sbjct: 61 IMTKLF-TMSRDEIFDTKQMMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S G KR++ + LV K K +V + L+ +L +
Sbjct: 120 KAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILMLSQDH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+YHA V + I++ + V+D+ + +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MM A +I+ NP HYA+A++Y T + AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH++ I P LAR++F I+ IP + AVAQ++ ++ +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352
>gi|15596646|ref|NP_250140.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAO1]
gi|107100883|ref|ZP_01364801.1| hypothetical protein PaerPA_01001913 [Pseudomonas aeruginosa PACS2]
gi|116049394|ref|YP_791803.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892678|ref|YP_002441547.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa LESB58]
gi|254234548|ref|ZP_04927871.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
gi|254239799|ref|ZP_04933121.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
gi|296390184|ref|ZP_06879659.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAb1]
gi|313106448|ref|ZP_07792679.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
gi|9947400|gb|AAG04838.1|AE004574_9 flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PAO1]
gi|115584615|gb|ABJ10630.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166479|gb|EAZ51990.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
gi|126193177|gb|EAZ57240.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
gi|218772906|emb|CAW28718.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa LESB58]
gi|310879181|gb|EFQ37775.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
Length = 378
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + ++
Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + ++ LL + A++ + P LL+ ++ I + + ++
Sbjct: 61 LMRSNFE-LSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + +L
Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + +D+ + KL M+KQE++DE K S G P
Sbjct: 180 LEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+L+AKG + +A
Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y K
Sbjct: 300 LKIREVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352
>gi|261821144|ref|YP_003259250.1| flagellar biosynthesis protein FlhB [Pectobacterium wasabiae
WPP163]
gi|261605157|gb|ACX87643.1| flagellar biosynthetic protein FlhB [Pectobacterium wasabiae
WPP163]
Length = 383
Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTEAP+ +K E A EG P SRE + ++A L L +
Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQVPRSRELTSVLMMVAGLAILWMGGDAMAGRLAV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ + L A+ +IP +L ++ + + ++ + +
Sbjct: 60 IVAQSL-NFDYATIGDDTQMLRHVGSLLHQAASALIPIMLGSVLVALSAPMLLGGILFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGVISTLFLIHNWPKILHLVSEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ +H +PI E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGIDHRVPILEAPPLARALFRHSEVGEHIPAALYAAVAEVLAWVYQLK 351
>gi|94312630|ref|YP_585839.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
CH34]
gi|93356482|gb|ABF10570.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
CH34]
Length = 380
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE +++++E A EG SRE F+ ++ +I L + +
Sbjct: 1 MSEE-SDLEKTEPATARRLEKAREEGQVVRSRELGTFAMLMTGVIGLWATGGVLGRKLDA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+H LA D + ++ + A +P LL+F + + + L + +
Sbjct: 60 VMHAGLA-FEPATAFDTNRMLSQFAAIVWDALLAFLPLLLMFGVAALVTPLALGGWMFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R+S G+ R++S ++LV K+ K +LVG + + + + A
Sbjct: 119 KSFSPDFSRMSPISGLGRLFSAHSLVELAKAIAKSLLVGGVGAWMIWRKLPEAIALMDAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L H V V ++ + + LD+ W + ++ KL+M+K+EIK E+K++ G+P
Sbjct: 179 IQEALLHMMELVLYVSGVVAGSLILVAALDVPWQLYTFHKKLRMTKEEIKQEMKETDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R+ R +MM +A +++TNPTHYA+ALRY + AP +VAKG + +A
Sbjct: 239 HIKARIRQQQRAIARRRMMAEVPKADVVVTNPTHYAVALRYEEGRMGAPRVVAKGADEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHRVPMLSAPPLARALHRHVELGHEIPAGLYTAVAEVLAWVYQLK 351
>gi|188592105|ref|YP_001796703.1| flagellar biosynthesis protein flhb [Cupriavidus taiwanensis LMG
19424]
gi|170938479|emb|CAP63466.1| FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family
[Cupriavidus taiwanensis LMG 19424]
Length = 380
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S +++E A EG SRE + F ++A + L S+
Sbjct: 1 MSEE-SDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L D + ++ + + +P LLLF + + + L+ V +
Sbjct: 60 VMQGALR-FEPATAFDPARMLSRFALMVWDSLLAFLPLLLLFGVAALAAPLLLGGWVFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R+S G+ R++S ++LV +K+ K +LVG + L + ++A
Sbjct: 119 KSFAPQFSRLSPIAGLGRMFSAHSLVELLKAVAKSLLVGAVGAWVLWRRLPEAIALMNAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+S G+P
Sbjct: 179 VQEALLHMVDLVMFCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IKNR + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG +A
Sbjct: 239 HIKNRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRALAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351
>gi|78485088|ref|YP_391013.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
XCL-2]
gi|78363374|gb|ABB41339.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
XCL-2]
Length = 381
Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ K+E PS KK+ +A +G P S+E + L ++L FF + + +
Sbjct: 1 MAENEDGTEKSEEPSEKKLREAREKGQVPRSKELTTLLMTLGAAVFLYFFGAQMMQDFET 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L S + D L+ L + + +++P LLL ++ + S ++ +
Sbjct: 61 LFIKGL-SFDRSHAYDFQMATNLVLGLVVHSIYMMVPFLLLMVLIAVVSPMLLGGWNFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIK+++S+N L+ K+F K LV + L +Y ++
Sbjct: 120 QALAPKISKLNPVSGIKKMFSMNALMELFKAFAKFTLVSVVAGFFLWYSYEEIISIGIEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L HA + + I + L + + +D+ + HQ ++LKM+KQE+K+E KQ G+P
Sbjct: 180 PKQALAHAGQLIVEAFIFVSLSLILIAAIDVPFQIHQHVTQLKMTKQEVKEEHKQQEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM+ A ++ITNPTH+A+AL+Y E P+++A G + +A
Sbjct: 240 EVKGRIRQLQREMSQKRMMQKVPEADVVITNPTHFAVALKYAPDEMAEPMVLALGSDFMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A EHNIP+ E P LAR+L+ ++ IP ++AVA ++ +Y +
Sbjct: 300 AQIRTLAKEHNIPLIEAPPLARALYYNAEVDRPIPYELFRAVAAILAYVYQLR 352
>gi|218778857|ref|YP_002430175.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
AK-01]
gi|218760241|gb|ACL02707.1| Flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
AK-01]
Length = 358
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE P+ KK +DA +G SR+ S ++A L + F Y +TS
Sbjct: 1 MADSPN-EDKTEQPTPKKRDDARKKGQVAKSRDLSSVVVLMAGLGIMYMFGPYMHYHITS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T + I L + ++ P L + G S +Q +
Sbjct: 60 LMENIFT--TDVSAWGVEEINTLGREMVREFLFILAPILAGVFVVGFASAAVQVGFYFSW 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F +++ G R++S LV KS K+ +VG I +++ ++ +
Sbjct: 118 EAAAPKFSKINPISGFGRMFSKQALVELAKSLAKLFIVGFISYLTIEAEMDNLILLGQVD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + + K+ I + + + + VLD + +LKM+KQE+KDE KQ+ G+P
Sbjct: 178 AANTLAYVLKIILKLFIRVGIIMVFVAVLDFAFQKWHHEQQLKMTKQEVKDEYKQTDGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + I R +MME +A +++TNPTH ALA++Y AP++VAKG IA
Sbjct: 238 MVKARIRRIQMEAARRRMMEEVPKADVVVTNPTHLALAIKYNALTMGAPLIVAKGAGPIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K++++A E+++PI E LAR+L+K V I +P Y+AVA+++ +Y K
Sbjct: 298 QKIKEVARENDVPIVENKELARALYKVVDIGDEVPVALYEAVAEVLAYVYGLK 350
>gi|167587841|ref|ZP_02380229.1| flagellar biosynthesis protein FlhB [Burkholderia ubonensis Bu]
Length = 403
Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTEA + ++ E A EG SRE + F+ + + P + +
Sbjct: 1 MADE-SDLDKTEAATPRRREKAREEGQVARSRELASFALLASGFYGTWLLAGPIGRHLQT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D + ++ +SL + P L + + + + + +++
Sbjct: 60 MLRGAF-TFDRGIAFDTNRMLTSAGSVSLEGLAALAPLLAMMGVAALLAPMALGGWLISS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+ RI+S+ + S K ++VG I I++ + +L
Sbjct: 119 KTFELKLDRLNPITGLGRIFSVQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLAMQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGAMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|218699549|ref|YP_002407178.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI39]
gi|218369535|emb|CAR17304.1| flagellar export pore protein [Escherichia coli IAI39]
Length = 382
Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMLRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|172059259|ref|YP_001806911.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria MC40-6]
gi|171991776|gb|ACB62695.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MC40-6]
Length = 399
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A +P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ S+ ++P L L + + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 FGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351
>gi|89094442|ref|ZP_01167382.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
gi|89081334|gb|EAR60566.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
Length = 379
Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K+I +A +G+ P S+E + ++A + ++ F S S+
Sbjct: 1 MAE-DSGQEKTEDPTPKRIREAREKGDVPRSKELATTLVLMAAVFSVIIFSSQLAESMLG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D + ++ + A + + + + + +
Sbjct: 60 MMESNFV-LDRQSVFDTNKMLAHFEVSAEEAIMGLAGIFAVLALAALVGPIALGGWNFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ GIKR++S+ +L+ K+ K LVG + L +L S
Sbjct: 119 QSIVPKGSRIDPLAGIKRMFSLKSLIELFKAIAKFSLVGGFAILILWTIREDILALASYE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + V + + + + V+D+ + + + K++M+ QE+KDE+K + G P
Sbjct: 179 ARVAIDEALDIIIWVFMALSAVLILVAVVDVPYQLYDYTQKMRMTMQEVKDELKNTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM+A A ++ITNPTHY++AL+Y APVL+AKG + +A
Sbjct: 239 EVKGRIRQLQREIAQRQMMQAVPEADVVITNPTHYSVALKYDGENRGAPVLLAKGADFVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+IPI P LAR+++ I+ IP Y AVAQ++ ++ K
Sbjct: 299 LKIREIAKEHDIPILSAPPLARAIYNSTEIDDEIPSGLYMAVAQVLAYVFQLK 351
>gi|126665002|ref|ZP_01735985.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
gi|126630372|gb|EBA00987.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
Length = 377
Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 181/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D+ KTE + +++E A +G S+E + + ++A LL F + ++ +
Sbjct: 1 MADDDSSQEKTEEATPRRLEKAKEDGETARSKELATTAVLMAGAGGLLIFGTHLGAALEA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + D+ H+ L + +A+ + P L++ ++ I + + +
Sbjct: 61 IMRDAF-TLERSAIFDMRHMSVQLIASTKAAAWALSPILVMLLVAAIAGSIGIGGLLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ +GI R++S +L+ K+ K+ LV TI + L +L +
Sbjct: 120 KSIAPKLNRMNPIKGIGRMFSARSLIELFKAIAKVGLVLTIAILILQVRTVDLLSISAEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H +T+ ++ + V+D+ + + + KLKM+ QE+KDE K S G P
Sbjct: 180 AVPAMEHVLWTLGWSFFLLSCATIIIAVIDVPFQIYDHHKKLKMTMQEVKDEHKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM+ A ++ITNPTHYA+AL+Y AP++VAKG + +A
Sbjct: 240 EVKGRIRQLQREMSQRRMMQDVPTADVVITNPTHYAVALKYDPNSMAAPMVVAKGGDELA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+ +IA E+ + I P LAR+++ I IP Y A+AQ++ ++ +
Sbjct: 300 FKIMEIARENKVEILRTPPLARAVYHNSDIGQEIPDGLYMAIAQVLAYVFQLR 352
>gi|330445379|ref|ZP_08309031.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489570|dbj|GAA03528.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 376
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D +TE + +++E A +G P SRE + + +++ + L++F ++
Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALGQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D+ + ++ + + L+ +
Sbjct: 60 IMTAMF-SLTREDIFDLDRLFVIIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F +++ GIKR++ + + V +KS +K+ LVG++ + +
Sbjct: 119 QAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSSLEDFFQLSIEV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A +HNI I LAR+++ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREVANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040367|gb|ACT57163.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS
Sbjct: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL
Sbjct: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN
Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP
Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA
Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI
Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
>gi|254250896|ref|ZP_04944214.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
gi|124893505|gb|EAY67385.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
Length = 414
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 178/350 (50%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+++ ++TEA + ++ E A EG SRE + F+ + A P + + L
Sbjct: 18 DESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGTHLQTMLR 77
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ S+ ++P L L + + + + +L+
Sbjct: 78 GAF-SFDRATAFDTNRMLSAAGSASVEGLAALLPLLALTGLAALLAPMALGGWLLSQKTF 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F R++ G+ RI+SI + S K ++VG I I++ + +L + +
Sbjct: 137 ELKFDRLNPIAGLGRIFSIQGPIQLAMSVAKTLVVGGIGGIAIWRSKDELLGLATRPLGT 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 197 ALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366
>gi|89075526|ref|ZP_01161937.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|89048798|gb|EAR54369.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
Length = 376
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D +TE + +++E A +G P SRE + + +++ + L++F +++
Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALSH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D+ + ++ + + L+ + +
Sbjct: 60 IMMAMF-SLTRDDIFDLDRLFVIILDAIVYILAPLFLVLIFLFVAAFIGAAGVGGVRFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LVG+I + N +
Sbjct: 119 QAAMPKLSKINPLSGIKRMFGLQSWVELIKSILKVGLVGSIACYLIFSNLEDFFQLSNEV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +H+I I LAR+++ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIANKHDIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351
>gi|92114138|ref|YP_574066.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
DSM 3043]
gi|91797228|gb|ABE59367.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
DSM 3043]
Length = 387
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ + KTE P+ ++++ A +G SRE + F + + L +
Sbjct: 1 MAE-DSDEEKTEDPTPRRLDKAKEDGEVARSRELTTFMLLAVGVGSLWSLGGHLYDRMGV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D + ++ + L + ++P L+ + + + ++ +++
Sbjct: 60 VMEQSFL-FSRAEAFDTAVLMAHVWTLGQNTLLALLPLFLIVTVVALTAPVMLGGWLISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ +G KR++S L K+ K +LVG + L N +L +S
Sbjct: 119 KALQPQISKLNPLKGFKRMFSSQVLAELGKAVAKSVLVGGVAVAFLWLNRGDLLGLMSLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L L + + + + ++D+ + + KL+M+K EIK E K++ G+P
Sbjct: 179 LSEALARGMDLAALCLSLCVAMLIVVVLIDVPFQLWSFTKKLRMTKDEIKKEHKETEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R ++ +S R +MM A +I+TNPTHYA+AL Y + +AP +VAKG +L+A
Sbjct: 239 QVKARMRAQQQSMARRRMMAKVPEADVIVTNPTHYAVALSYEGSYMEAPRVVAKGSDLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ H +P+ E P LAR+L + V I+ +P Y AVA+++ Y K
Sbjct: 299 TRIRELGEAHGVPLLEAPPLARALHQHVDIDQEVPATLYTAVAEVLAWAYRLK 351
>gi|242238960|ref|YP_002987141.1| flagellar biosynthesis protein FlhB [Dickeya dadantii Ech703]
gi|242131017|gb|ACS85319.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech703]
Length = 383
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEAP+ + E A EG P SRE + ++ L L +
Sbjct: 1 MAD-DSDLEKTEAPTPHRKEKAREEGQIPRSRELTSIMMLVVGLGILWMAGDIVARRLAL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L T + D ++ + L ++P +L ++ I + ++ + +
Sbjct: 60 LLSQGLF-FTHEMISDDKQMLKHMLGLLKLGGSALVPIILGTVVVAIAAPVMLGGLIFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +++ GIKR+ S L K+ +K ++VG I ++ L N+ +L +S
Sbjct: 119 KQMEFNLNKLNPISGIKRLVSSQMLAELFKAILKAVVVGGITSLFLWHNWQDILRLVSEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + + +L+ + + D+ W KL+MSKQ+I+DE KQ+ G+P
Sbjct: 179 LFSAVTDSLHFAIFCGFFVLIGLIPMVGFDVFWQIWSHLKKLRMSKQDIRDEFKQNEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA
Sbjct: 239 HVKGRIRQLQRAMAQRRMMADVPKADVIVTNPTHYAVALQYNEQKMSAPKVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IPI E P LAR+L+K I IP Y AVA+++ +Y K
Sbjct: 299 LKIRELGNEHKIPILEAPPLARALYKHSEIGKNIPSTLYAAVAEVLVWVYQIK 351
>gi|120554898|ref|YP_959249.1| flagellar biosynthesis protein FlhB [Marinobacter aquaeolei VT8]
gi|120324747|gb|ABM19062.1| flagellar biosynthetic protein FlhB [Marinobacter aquaeolei VT8]
Length = 378
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 176/354 (49%), Gaps = 2/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E D KTE P+ +++E A EG S+E + + +LA LL F + S+
Sbjct: 1 MAEENDNSQEKTEEPTPRRLEKAKEEGQTARSKELATMAVLLAGAGGLLIFGTSLGASIE 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
S + + + D H+ L + A+ + P L++ ++ I + + +
Sbjct: 61 SIMRDSFV-IERSAIFDTRHMSVQLILAAKEAAWALSPILVMLLIAAIAGSIGIGGLLFS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P F R+ +G+ R++S+ +L+ +K+ K+ LV + + L +L
Sbjct: 120 AKAIAPKFNRMDPIKGLGRMFSMRSLIELVKAIAKVGLVMAVAILILNLRTEDLLAIAEE 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ H +T+ + + +D+ + + KL+M+KQE+KDE K + G
Sbjct: 180 PTVPAMEHVLWTLGWSFFFLSCATIAIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K + + + R + +MM+ +A ++ITNPTHYA+AL+Y Q APV+VAKG + +
Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPKADVVITNPTHYAVALKYDQKTMGAPVVVAKGADEV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+ +IA E+ + + P L R+++ I IP Y A+AQ++ ++ +
Sbjct: 300 AFKIMEIARENKVEVLRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQLR 353
>gi|170702808|ref|ZP_02893660.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
IOP40-10]
gi|170132277|gb|EDT00753.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
IOP40-10]
Length = 399
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A +P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ S+ ++P L L + + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351
>gi|85711029|ref|ZP_01042089.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
gi|85694942|gb|EAQ32880.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
Length = 375
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D +TE P+ K+ +A +G S+E +++ + F+F +Y+
Sbjct: 1 MAETD--QERTEEPTEKRKREAREKGQIARSKEMGTAFVLVSAAVAF-FWFGESLYAGVR 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + +R+ D S I L VI +F +
Sbjct: 58 GLFRDLFTLERRQAFDTSQIYKALAVGFEHIIWPVIIIFAFITLFTFLGNSWLGGINFSW 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G KR++ LV +K K +V + L+ + +L
Sbjct: 118 KAMAPKFSRMNPMNGFKRMFGTQALVELVKGIAKFGVVAISAFLLLSWQFDNILQISMGQ 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S++ +A + + ++I + + V+D + + L+M+KQEIKDE K S G+P
Sbjct: 178 MPSMIENALDILMWMFLLICCSMFLIVVIDAPFQLWKHNKDLRMTKQEIKDEHKDSEGSP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + +MM+ +A +++TNPTH+A+A++Y ++ N AP+L+AKG + A
Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHFAVAIKYEESGNQAPILLAKGTDETA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
K+R+IA E+++P+ P+LARS++ + + IP + AVAQ++ +Y K+
Sbjct: 298 AKIREIALEYDVPLVASPALARSIYHTTELETEIPRGLFVAVAQVLAYVYQLKM 351
>gi|315286607|gb|EFU46040.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 110-3]
Length = 400
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 20 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 79
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 80 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 138
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 139 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 198
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 199 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 258
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 259 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 318
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 319 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 368
>gi|119897394|ref|YP_932607.1| flagellar biosynthesis protein FlhB [Azoarcus sp. BH72]
gi|119669807|emb|CAL93720.1| flagellar biosynthetic protein FlhB [Azoarcus sp. BH72]
Length = 381
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 183/352 (51%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE S +++E A EG P SRE S F + ++ L +
Sbjct: 1 MAE-DSDLEKTEPASGRRLEQAREEGQVPQSRELSTFLVTMTGVVTLWLLGEWMAQRLLG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A + D + I+ L L A ++P L ++ + S + V
Sbjct: 60 MIRRSFA-FEREMAFDHTLILAELQSLLGGALLTLMPLFLALLVAAVASPIALGGLVFAP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F R++ +G+ R++S++ L +K+ +K +LVG + L + D +
Sbjct: 119 KALGPNFGRMNPIQGLGRMFSVHGLAEMVKAILKALLVGGVGAAVLWYYKDHLFDLMVEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ TV ++I + L +LD+ + Q++ +L+M+K+E+K E K+ G+P
Sbjct: 179 LEVGMPDFAETVVFTALLITASLGLLALLDVPFQLWQYHKRLRMTKEEVKREAKEQDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R R +MM A +A +++TNPTH+++AL+Y APV+VAKG+ +A
Sbjct: 239 QLKGRIRAMQREMARGRMMAAVPKADVVVTNPTHFSVALKYDAERMGAPVVVAKGRGELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA E+++P+ E P LAR+L+ + AIP Y AVA+++ +Y
Sbjct: 299 MKIREIARENDVPLLEAPPLARALYAHCELEQAIPAALYTAVAEVMAYVYQL 350
>gi|308048765|ref|YP_003912331.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
gi|307630955|gb|ADN75257.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
Length = 389
Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ +TE + ++ E A +G P S+E + ++A +L ++ +
Sbjct: 1 MAENDSSQERTEEATPRRREQAREKGQVPRSKELGTAAVLVAAAAGMLMMGGQIGEAMLT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
T+ ++ D+ I L + + V+ +L+ + G + +
Sbjct: 61 VAKSQFE-LTRAEVFDLGEISELFSRILSELMVPVLGFVLVLFIAGFLGNIGLGGMSFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S G KR++ + LV +KS K ++ + L+ N+ +L S N
Sbjct: 120 QAAAPKASKMSPLAGFKRMFGLQALVELVKSIAKFAVIALVAWALLSVNFDQILQLSSGN 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + A + K+ +++ + + ++D + +LKM+KQE+KDE KQ+ G P
Sbjct: 180 PEGAVRDALALLLKLFVLLCSSLLIIVIIDAPYQLWNHNKQLKMTKQEVKDEYKQTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM +A +++ NPTHY++ALRY ++ N+AP++VAKG + IA
Sbjct: 240 EVKGKIRQLQREMAQRRMMAEVPKADVVVVNPTHYSVALRYDKSINNAPLVVAKGTDEIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH +P+ P+LAR+++ ++S IP + AVAQ++ +Y K
Sbjct: 300 LKIREIAREHEVPVVSSPALARAVYYSTKLDSPIPEGLFTAVAQILAYVYQLK 352
>gi|221202387|ref|ZP_03575420.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
CGD2M]
gi|221208974|ref|ZP_03581970.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
gi|221171096|gb|EEE03547.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
gi|221177801|gb|EEE10215.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
CGD2M]
Length = 399
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ SL ++P L L + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I +++ + +L +
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351
>gi|115350237|ref|YP_772076.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria AMMD]
gi|115280225|gb|ABI85742.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria AMMD]
Length = 399
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A +P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ S+ ++P L L + + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLAMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351
>gi|171321732|ref|ZP_02910646.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
gi|171092980|gb|EDT38217.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
Length = 399
Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A +P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ S+ ++P L L + + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLLMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351
>gi|134294343|ref|YP_001118078.1| flagellar biosynthesis protein FlhB [Burkholderia vietnamiensis G4]
gi|134137500|gb|ABO53243.1| flagellar biosynthetic protein FlhB [Burkholderia vietnamiensis G4]
Length = 399
Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGTWLVSGPSGAHLQT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D ++ S V+P L L + + + + +++
Sbjct: 60 MLRSAF-TFDRATAFDTHRMLSAAGTASAEGLAAVLPILALTGLAALLAPMALGGWLISQ 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R+ G+ R++SI + S K ++VG I +++ + +L +
Sbjct: 119 KTFELKFDRLDPIAGLGRMFSIQGPIQLAMSVAKTMVVGGIGGVAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + L LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALADALHLVAVCCGTTVAGMLVLAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351
>gi|312884898|ref|ZP_07744588.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367375|gb|EFP94937.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 376
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S + S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLIIGAIALMWFGSFLAKGLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ LL+ + + ++
Sbjct: 60 VMGRLFD-LSREEIFDLDKLFDIILGSVGELVFPLLLILLVLFLAALIGAAGVGGINFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P + +++ G+KR+ + + V +KS +K+ LV + + + +
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGVQSWVELIKSILKVTLVSGMAFYLINDAKQDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +D+ + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVAAIDVPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP HY++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHYSVALRYRQDTDKAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P L R+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREVAREHDIYIVPAPPLTRALYFSTELEQEIPDGLFTAVAQILAYVFQLK 351
>gi|221214213|ref|ZP_03587185.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
gi|221165868|gb|EED98342.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
Length = 399
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ S+ ++P L L + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASVEGLAALLPILALTGAAALLAPMALGGWLISP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I +++ + +L +
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351
>gi|293446267|ref|ZP_06662689.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
gi|291323097|gb|EFE62525.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
Length = 396
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 16 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 75
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 76 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 134
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 135 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 194
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 195 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 254
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 255 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 314
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 315 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 364
>gi|161523355|ref|YP_001578367.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
17616]
gi|189351872|ref|YP_001947500.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
17616]
gi|160340784|gb|ABX13870.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans ATCC
17616]
gi|189335894|dbj|BAG44964.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
Length = 399
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++TEA + ++ E A EG SRE + F+ + A +P + +
Sbjct: 1 MADE-SDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + D ++ SL ++P L L + + + +++
Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I +++ + +L +
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351
>gi|15802292|ref|NP_288317.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7
EDL933]
gi|12515942|gb|AAG56870.1|AE005410_6 putative part of export apparatus for flagellar proteins
[Escherichia coli O157:H7 str. EDL933]
Length = 382
Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 190/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K
Sbjct: 301 REIGXENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|331647476|ref|ZP_08348568.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
gi|330911689|gb|EGH40199.1| flagellar biosynthesis protein FlhB [Escherichia coli AA86]
gi|331043200|gb|EGI15338.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
Length = 382
Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|15831844|ref|NP_310617.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
Sakai]
gi|168747910|ref|ZP_02772932.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4113]
gi|168757917|ref|ZP_02782924.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4401]
gi|168762323|ref|ZP_02787330.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4501]
gi|168770866|ref|ZP_02795873.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4486]
gi|168776570|ref|ZP_02801577.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4196]
gi|168783183|ref|ZP_02808190.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4076]
gi|168789748|ref|ZP_02814755.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC869]
gi|168801881|ref|ZP_02826888.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC508]
gi|195939584|ref|ZP_03084966.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
EC4024]
gi|208810589|ref|ZP_03252465.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4206]
gi|208816756|ref|ZP_03257876.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4045]
gi|208821749|ref|ZP_03262069.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4042]
gi|209400586|ref|YP_002270964.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4115]
gi|217328966|ref|ZP_03445047.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
TW14588]
gi|254793504|ref|YP_003078341.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
TW14359]
gi|261227619|ref|ZP_05941900.1| predicted flagellar export pore protein [Escherichia coli O157:H7
str. FRIK2000]
gi|261258215|ref|ZP_05950748.1| predicted flagellar export pore protein [Escherichia coli O157:H7
str. FRIK966]
gi|13362058|dbj|BAB36013.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
Sakai]
gi|187768084|gb|EDU31928.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4196]
gi|188017418|gb|EDU55540.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4113]
gi|188999430|gb|EDU68416.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4076]
gi|189355171|gb|EDU73590.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4401]
gi|189360277|gb|EDU78696.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4486]
gi|189367382|gb|EDU85798.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4501]
gi|189370698|gb|EDU89114.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC869]
gi|189376036|gb|EDU94452.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC508]
gi|208725105|gb|EDZ74812.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4206]
gi|208731099|gb|EDZ79788.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4045]
gi|208741872|gb|EDZ89554.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4042]
gi|209161986|gb|ACI39419.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
EC4115]
gi|209767300|gb|ACI81962.1| flagellar biosynthesis protein FlhB [Escherichia coli]
gi|209767302|gb|ACI81963.1| flagellar biosynthesis protein FlhB [Escherichia coli]
gi|209767306|gb|ACI81965.1| flagellar biosynthesis protein FlhB [Escherichia coli]
gi|217318313|gb|EEC26740.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
TW14588]
gi|254592904|gb|ACT72265.1| predicted flagellar export pore protein [Escherichia coli O157:H7
str. TW14359]
gi|320188579|gb|EFW63241.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
EC1212]
gi|326342258|gb|EGD66039.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
1044]
gi|326343808|gb|EGD67570.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
1125]
Length = 382
Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 190/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|90579940|ref|ZP_01235748.1| flagellar biosynthesis protein [Vibrio angustum S14]
gi|90438825|gb|EAS64008.1| flagellar biosynthesis protein [Vibrio angustum S14]
Length = 376
Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D +TE + +++E A +G P SRE + + +++ + L++F +++
Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWFGEGLSKALSH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D+ + ++ + + L+ + +
Sbjct: 60 IMTAMF-SLTRDDIFDLDRLFVIILDAIVYVLAPLFLVLIFLFVAAFIGAAGVGGVRFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LVG+I + + +
Sbjct: 119 QAAMPKLSKMNPLSGIKRMFGMQSWVELIKSILKVGLVGSIACYLIFSSLEDFFQLSNEV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +HNI I LAR+++ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351
>gi|170683078|ref|YP_001743365.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
gi|170520796|gb|ACB18974.1| flagellar biosynthetic protein FlhB [Escherichia coli SMS-3-5]
Length = 382
Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|218689877|ref|YP_002398089.1| flagellar biosynthesis protein FlhB [Escherichia coli ED1a]
gi|218427441|emb|CAR08339.2| flagellar export pore protein [Escherichia coli ED1a]
Length = 382
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|194434131|ref|ZP_03066400.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
gi|194417675|gb|EDX33775.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
gi|332095083|gb|EGJ00117.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 155-74]
Length = 382
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + + + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVPVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTVFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|281178949|dbj|BAI55279.1| flagellar protein FlhB [Escherichia coli SE15]
Length = 382
Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR +S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRTFSAQTGAELLKAILKTILVGSVTGFFLWYHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|324007265|gb|EGB76484.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 57-2]
Length = 382
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPLT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|218705380|ref|YP_002412899.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
gi|293405373|ref|ZP_06649365.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
gi|298381016|ref|ZP_06990615.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
gi|300899130|ref|ZP_07117412.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
gi|218432477|emb|CAR13370.1| flagellar export pore protein [Escherichia coli UMN026]
gi|291427581|gb|EFF00608.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
gi|298278458|gb|EFI19972.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
gi|300357248|gb|EFJ73118.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
Length = 382
Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|26248146|ref|NP_754186.1| flagellar biosynthesis protein FlhB [Escherichia coli CFT073]
gi|91211104|ref|YP_541090.1| flagellar biosynthesis protein FlhB [Escherichia coli UTI89]
gi|110641997|ref|YP_669727.1| flagellar biosynthesis protein FlhB [Escherichia coli 536]
gi|117624031|ref|YP_852944.1| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1]
gi|191172970|ref|ZP_03034504.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
gi|218558744|ref|YP_002391657.1| flagellar biosynthesis protein FlhB [Escherichia coli S88]
gi|227885693|ref|ZP_04003498.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
gi|237705835|ref|ZP_04536316.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
gi|300994042|ref|ZP_07180661.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
gi|301050765|ref|ZP_07197623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
gi|306814291|ref|ZP_07448457.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
gi|26108550|gb|AAN80753.1|AE016762_6 Flagellar biosynthetic protein flhB [Escherichia coli CFT073]
gi|91072678|gb|ABE07559.1| flagellar biosynthetic protein FlhB [Escherichia coli UTI89]
gi|110343589|gb|ABG69826.1| flagellar biosynthetic protein FlhB [Escherichia coli 536]
gi|115513155|gb|ABJ01230.1| flagellar biosynthesis protein B [Escherichia coli APEC O1]
gi|190906681|gb|EDV66286.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
gi|218365513|emb|CAR03240.1| flagellar export pore protein [Escherichia coli S88]
gi|226900592|gb|EEH86851.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
gi|227837266|gb|EEJ47732.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
gi|294491560|gb|ADE90316.1| flagellar biosynthetic protein FlhB [Escherichia coli IHE3034]
gi|300297582|gb|EFJ53967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
gi|300406410|gb|EFJ89948.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
gi|305852450|gb|EFM52901.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
gi|307553898|gb|ADN46673.1| flagellar biosynthetic protein FlhB [Escherichia coli ABU 83972]
gi|307626638|gb|ADN70942.1| flagellar biosynthesis protein FlhB [Escherichia coli UM146]
gi|315290307|gb|EFU49683.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 153-1]
gi|323186760|gb|EFZ72080.1| flagellar biosynthetic protein FlhB [Escherichia coli RN587/1]
gi|323952382|gb|EGB48255.1| flagellar biosynthetic protein FlhB [Escherichia coli H252]
gi|324013524|gb|EGB82743.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 60-1]
Length = 382
Score = 358 bits (918), Expect = 9e-97, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|300904767|ref|ZP_07122595.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
gi|301306905|ref|ZP_07212951.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
gi|300403281|gb|EFJ86819.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
gi|300837880|gb|EFK65640.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
gi|315257287|gb|EFU37255.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 85-1]
Length = 382
Score = 358 bits (918), Expect = 9e-97, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|323968302|gb|EGB63709.1| flagellar biosynthetic protein FlhB [Escherichia coli M863]
gi|327253009|gb|EGE64663.1| flagellar biosynthetic protein FlhB [Escherichia coli STEC_7v]
Length = 382
Score = 358 bits (918), Expect = 9e-97, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|167420299|ref|ZP_02312052.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166961994|gb|EDR58015.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. MG05-1020]
Length = 390
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L ++P ++ + ++ + +
Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|289208350|ref|YP_003460416.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
gi|288943981|gb|ADC71680.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
Length = 383
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN++ KTE P+ K++ +A +G P SRE S F ++A ++ FF +
Sbjct: 1 MAENESGQEKTEQPTPKRLREAKEKGQVPRSRELSTFLVLMAAGGFMTFFGPTLGGQLAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D S ++ L+ R ++P + M+ + + ++ +
Sbjct: 61 QTAGRFD-IERDLAYDSSLLLPYLSEQIFMTLRTLLPLFGVLMVAAVLAPILIGGANFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
KP +++ +G+KRI+S L+ F K+F K +LV + L +L
Sbjct: 120 QAAKPKASKLNPLKGLKRIFSWQGLMEFGKTFAKFVLVAGVAMSVLWTFSDRLLMLGYEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA + + + + +D + +L+M++QE+KDE K++ G P
Sbjct: 180 LEQAITHAAQLALGTFVAVSAALILVAAIDAPFQMWNHQKQLRMTRQELKDEYKETDGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + + +MME +A ++ITNPTHYA+A+ Y + AP LVAKG + +A
Sbjct: 240 EVKQKIRQLQQEMAQRRMMEEVPKADVVITNPTHYAVAITYEASRMAAPKLVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A EH I E P +AR+++ +N IP + AVA+++ +Y K
Sbjct: 300 ASIRAVADEHKIIRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQLK 352
>gi|74317263|ref|YP_315003.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
ATCC 25259]
gi|74056758|gb|AAZ97198.1| Flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
ATCC 25259]
Length = 390
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +TEAPS +++E A EG SRE + F ++ L S +++
Sbjct: 1 MAEE-SDQERTEAPSPQRLEKAREEGQVLQSRELATFVVLMTGGAALWAMASQLGQTLSQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L D +H++ L+ A+ + P LLL ++ S ++ R + +
Sbjct: 60 IVRGGL-QFHPAVARDSAHVMTQLSQQFFDATLALAPFLLLVVIATFASPILLRGWLFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P FKR+S G KR++S LV +K+ K+ L+G + + N ++
Sbjct: 119 KAFMPDFKRLSPLAGFKRMFSSQGLVELVKALAKVGLLGGVAAWLVWSNVEAIVSLSLEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + H + KV ++ + + VLD+ + +Y+KLKM+K++++ E K+S G+P
Sbjct: 179 PTAAIGHMGDIIGKVFLLASGAMIFIVVLDLPYQLWNFYNKLKMTKEQLRQEAKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R ++ R R +MM A +++TNPTHYA+AL+Y + + AP +VAKG +L+A
Sbjct: 239 HVKARIRAQQREVARRRMMAEVPSADVVVTNPTHYAVALKYSEGKMGAPRVVAKGADLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH +P+ E P LAR+LF+ I + IP Y AVA+++ ++ +
Sbjct: 299 AKIREIAAEHRVPLLEAPPLARALFRHTDIGNEIPATLYAAVAEVLAYVFQLR 351
>gi|16129832|ref|NP_416394.1| flagellin export apparatus, substrate specificity protein
[Escherichia coli str. K-12 substr. MG1655]
gi|89108720|ref|AP_002500.1| predicted flagellar export pore protein [Escherichia coli str. K-12
substr. W3110]
gi|157156351|ref|YP_001463185.1| flagellar biosynthesis protein FlhB [Escherichia coli E24377A]
gi|170081536|ref|YP_001730856.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
DH10B]
gi|193065459|ref|ZP_03046528.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
gi|194429326|ref|ZP_03061852.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
gi|209919306|ref|YP_002293390.1| flagellar biosynthesis protein FlhB [Escherichia coli SE11]
gi|218554468|ref|YP_002387381.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI1]
gi|238901095|ref|YP_002926891.1| putative flagellar export pore protein [Escherichia coli BW2952]
gi|256017916|ref|ZP_05431781.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
gi|260844290|ref|YP_003222068.1| putative flagellar export pore protein FlhB [Escherichia coli
O103:H2 str. 12009]
gi|260855820|ref|YP_003229711.1| putative flagellar export pore protein FlhB [Escherichia coli
O26:H11 str. 11368]
gi|260868478|ref|YP_003234880.1| putative flagellar export pore protein FlhB [Escherichia coli
O111:H- str. 11128]
gi|293410191|ref|ZP_06653767.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
gi|293415195|ref|ZP_06657838.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
gi|300819864|ref|ZP_07100049.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
gi|300924972|ref|ZP_07140897.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
gi|300951503|ref|ZP_07165338.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
gi|300956607|ref|ZP_07168886.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
gi|301029330|ref|ZP_07192427.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
gi|301327670|ref|ZP_07220877.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
gi|307314208|ref|ZP_07593818.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
gi|331668576|ref|ZP_08369424.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
gi|331673405|ref|ZP_08374173.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
gi|331677765|ref|ZP_08378440.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
gi|332278948|ref|ZP_08391361.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
gi|2494574|sp|P76299|FLHB_ECOLI RecName: Full=Flagellar biosynthetic protein flhB
gi|1736533|dbj|BAA15696.1| predicted flagellar export pore protein [Escherichia coli str. K12
substr. W3110]
gi|1788188|gb|AAC74950.1| flagellin export apparatus, substrate specificity protein
[Escherichia coli str. K-12 substr. MG1655]
gi|157078381|gb|ABV18089.1| flagellar biosynthetic protein FlhB [Escherichia coli E24377A]
gi|169889371|gb|ACB03078.1| predicted flagellar export pore protein [Escherichia coli str. K-12
substr. DH10B]
gi|192926864|gb|EDV81489.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
gi|194412633|gb|EDX28929.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
gi|209912565|dbj|BAG77639.1| flagellar protein FlhB [Escherichia coli SE11]
gi|218361236|emb|CAQ98820.1| flagellar export pore protein [Escherichia coli IAI1]
gi|222033628|emb|CAP76369.1| flagellar biosynthetic protein flhB [Escherichia coli LF82]
gi|238862415|gb|ACR64413.1| predicted flagellar export pore protein [Escherichia coli BW2952]
gi|257754469|dbj|BAI25971.1| predicted flagellar export pore protein FlhB [Escherichia coli
O26:H11 str. 11368]
gi|257759437|dbj|BAI30934.1| predicted flagellar export pore protein FlhB [Escherichia coli
O103:H2 str. 12009]
gi|257764834|dbj|BAI36329.1| predicted flagellar export pore protein FlhB [Escherichia coli
O111:H- str. 11128]
gi|260448997|gb|ACX39419.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
gi|284921799|emb|CBG34872.1| flagellar biosynthesis protein FlhB [Escherichia coli 042]
gi|291432843|gb|EFF05822.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
gi|291470659|gb|EFF13143.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
gi|299877756|gb|EFI85967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
gi|300316589|gb|EFJ66373.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
gi|300418847|gb|EFK02158.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
gi|300449253|gb|EFK12873.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
gi|300527561|gb|EFK48623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
gi|300845765|gb|EFK73525.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
gi|306906177|gb|EFN36695.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
gi|312946479|gb|ADR27306.1| flagellar biosynthesis protein FlhB [Escherichia coli O83:H1 str.
NRG 857C]
gi|315061186|gb|ADT75513.1| predicted flagellar export pore protein [Escherichia coli W]
gi|315136523|dbj|BAJ43682.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
gi|323180678|gb|EFZ66223.1| flagellar biosynthetic protein FlhB [Escherichia coli 1180]
gi|323186344|gb|EFZ71694.1| flagellar biosynthetic protein FlhB [Escherichia coli 1357]
gi|323378237|gb|ADX50505.1| flagellar biosynthetic protein FlhB [Escherichia coli KO11]
gi|323940452|gb|EGB36643.1| flagellar biosynthetic protein FlhB [Escherichia coli E482]
gi|323948234|gb|EGB44222.1| flagellar biosynthetic protein FlhB [Escherichia coli H120]
gi|324017961|gb|EGB87180.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 117-3]
gi|324118940|gb|EGC12829.1| flagellar biosynthetic protein FlhB [Escherichia coli E1167]
gi|331063770|gb|EGI35681.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
gi|331069603|gb|EGI40990.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
gi|331074225|gb|EGI45545.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
gi|332101300|gb|EGJ04646.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
Length = 382
Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|191168095|ref|ZP_03029894.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
gi|309796010|ref|ZP_07690423.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
gi|190901893|gb|EDV61643.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
gi|308120460|gb|EFO57722.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
Length = 382
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|323174603|gb|EFZ60224.1| flagellar biosynthetic protein FlhB [Escherichia coli LT-68]
Length = 382
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGVENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|330815159|ref|YP_004358864.1| FlhB [Burkholderia gladioli BSR3]
gi|327367552|gb|AEA58908.1| FlhB [Burkholderia gladioli BSR3]
Length = 404
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE + ++ E A EG SRE S F+ + A P + +
Sbjct: 1 MAE-DSDLEKTEEATPRRREKAREEGQVARSRELSSFALLAAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D ++ + + P L L + + + + +L+
Sbjct: 60 MLRGSLG-FDRAAAFDTHAMLTGAGRAGMEGLSALAPVLALTGLAALAAPIALGGWLLSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+S+ L+ + K ++VG I I++ ++ +L +
Sbjct: 119 KAIGFKFDRLNPISGLGRIFSLQGLIQLGMALAKTVVVGGIGGIAIWKSREELLGLMMLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L V + + + + +D+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHQALADTLHLVAVCCGVTVAGMLVVAGMDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+ALRY E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVVAKGINLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAEEHRVPILEAPPLARALYHNVELEREIPGPLYSAVAEVLAWVYQLK 351
>gi|254491439|ref|ZP_05104618.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxidans
DMS010]
gi|224462917|gb|EEF79187.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxydans
DMS010]
Length = 377
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P++K++++A N+G P SRE + ++A + LLF I S+
Sbjct: 1 MAE-QSAQEKTEEPTAKRLDEARNKGQVPRSRELTTVMVLIASAVALLFMGKNIIASMAQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ S T+++L D ++ + + + + L + ++ + + + +
Sbjct: 60 VMNKSF-SFTRKELFDPMAMIHHFIYTIETIAFDLSMFLGVTVLAALAAPALIGGWNFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +R+ +G+KRI+ L+ K+ K ILVG I T L +L
Sbjct: 119 QAMAPKGERMDPLKGLKRIFGPQGLIELAKALGKFILVGVISTAILWSIRDQLLTLGRQE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + V + I + + ++D+ + +L+M+KQE+KDE+K++ GNP
Sbjct: 179 VNVAMADLGYLTMWVFLAICASLILIALIDVPFQIWNHNRQLRMTKQEVKDEMKETDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MM+ A ++ITNPTHYA+ALRY QT+ APV+VAKG + I+
Sbjct: 239 EVKGRIRRMQVELSQQRMMQDIPSADVVITNPTHYAVALRYDQTKTGAPVVVAKGADFIS 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R +A +++PI P L R+++ I IP Y AVAQ++ ++ +
Sbjct: 299 QQIRLVAEHNDVPILSAPPLTRAVYYSTEIGDEIPSGLYIAVAQVLAFVFQLR 351
>gi|22126401|ref|NP_669824.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
gi|45441419|ref|NP_992958.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
Microtus str. 91001]
gi|108807160|ref|YP_651076.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
gi|108812495|ref|YP_648262.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
gi|145598622|ref|YP_001162698.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
gi|149366261|ref|ZP_01888296.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
gi|165925946|ref|ZP_02221778.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938738|ref|ZP_02227293.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010865|ref|ZP_02231763.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166210428|ref|ZP_02236463.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401110|ref|ZP_02306613.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167425790|ref|ZP_02317543.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170024657|ref|YP_001721162.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
YPIII]
gi|186895104|ref|YP_001872216.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
PB1/+]
gi|218928912|ref|YP_002346787.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
gi|229896231|ref|ZP_04511401.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
gi|229897166|ref|ZP_04512322.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897892|ref|ZP_04513043.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902876|ref|ZP_04517993.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
gi|270486660|ref|ZP_06203734.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
gi|294504041|ref|YP_003568103.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|21959388|gb|AAM86075.1|AE013854_11 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45436280|gb|AAS61835.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Microtus str. 91001]
gi|108776143|gb|ABG18662.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
gi|108779073|gb|ABG13131.1| flagellar biosynthetic protein FlhB [Yersinia pestis Antiqua]
gi|115347523|emb|CAL20431.1| flagellar biosynthetic protein FlhB [Yersinia pestis CO92]
gi|145210318|gb|ABP39725.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides F]
gi|149292674|gb|EDM42748.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
gi|165913352|gb|EDR31974.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922150|gb|EDR39327.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990209|gb|EDR42510.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207608|gb|EDR52088.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167049499|gb|EDR60907.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055189|gb|EDR64986.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751191|gb|ACA68709.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
YPIII]
gi|186698130|gb|ACC88759.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
PB1/+]
gi|229680323|gb|EEO76422.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
gi|229688933|gb|EEO80998.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693503|gb|EEO83552.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701154|gb|EEO89183.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
gi|262361772|gb|ACY58493.1| flagellar biosynthesis protein [Yersinia pestis D106004]
gi|262366091|gb|ACY62648.1| flagellar biosynthesis protein [Yersinia pestis D182038]
gi|270335164|gb|EFA45941.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
gi|294354500|gb|ADE64841.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
Length = 386
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L ++P ++ + ++ + +
Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|187478176|ref|YP_786200.1| flagellar biosynthesis protein FlhB [Bordetella avium 197N]
gi|115422762|emb|CAJ49290.1| flagellar biosynthetic protein [Bordetella avium 197N]
Length = 380
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+ KTEA S +++E A EG SRE + F + A + L ++
Sbjct: 1 MAD-DSDLEKTEAASPRRLEKAREEGQIARSRELTTFLMLAAGVGGLWLVGPSLYRGLSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + R D + +V A ++P + ++ + ++ V +
Sbjct: 60 VMRDGMG-FDPRITHDTTAMVNQAVIGFGQAIWAILPVFGILVVAALLGSVMLGGLVFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ +++ G+KRI+S LV +K+ K +LVG + + + ML +
Sbjct: 119 KPLEFKASKLNPLSGLKRIFSSQTLVELIKASAKALLVGGVAGWVIWRYHDEMLGLMHVP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V I+ + + ++D+ W KL+MSK++++ E K+S G+P
Sbjct: 179 PPAALASALKLVVLCCAFIVSSLMLVVLIDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R+ R +MM RA +++TNPTHYA+AL Y ++ AP ++AKG L+A
Sbjct: 239 HIKARIRQQQRAAARRRMMSQVPRADVVVTNPTHYAVALSYDESGGGAPTVIAKGTGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGHEIPAALYTAVAEVLAWVFQLR 351
>gi|51596001|ref|YP_070192.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
32953]
gi|51589283|emb|CAH20904.1| flagellar biosynthetic/export protein FlhB [Yersinia
pseudotuberculosis IP 32953]
Length = 386
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L ++P ++ + ++ + +
Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A II+TNPTHYA+AL+Y +++ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADIIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|331683387|ref|ZP_08383988.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
gi|331079602|gb|EGI50799.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
Length = 382
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLTRRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKSILVGSVTGFYLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|215487092|ref|YP_002329523.1| flagellar biosynthesis protein FlhB [Escherichia coli O127:H6 str.
E2348/69]
gi|312967082|ref|ZP_07781300.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
gi|215265164|emb|CAS09552.1| predicted flagellar export pore protein FlhB [Escherichia coli
O127:H6 str. E2348/69]
gi|312288546|gb|EFR16448.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
Length = 382
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQREGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|220932506|ref|YP_002509414.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
gi|219993816|gb|ACL70419.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
Length = 356
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 104/346 (30%), Positives = 186/346 (53%), Gaps = 1/346 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
KTE P+ +++ A +G S+E S +++ + L F IYS+T+ +
Sbjct: 5 QSGEKTEKPTPRRLRKARQQGQVAKSQELSSAFTLMGGFLVLFFIIKNIIYSLTNRMSYF 64
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ K+ D++ + L+ A RL+ P LL + G+ +Q P+ + +KP
Sbjct: 65 LSLEAYNKINDVNSLYILIDSFYFIA-RLISPVLLASAIIGLVVNFLQVGPLFVPDLIKP 123
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
K+++ G KR++S+ ++V +KS KI +V + + L ++ T+++ +
Sbjct: 124 DLKKINPISGFKRLFSLKSVVELIKSLFKIAIVAILAYLQLKNSWQTLINLSRQGITEAV 183
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + KV I I++ + L + D + ++ LKM+KQE+K+E K+ G+P IK++
Sbjct: 184 AYLGHLIFKVAITIIICLVVLGIADYIYQKWEYIRNLKMTKQEVKEEHKEIEGDPRIKSK 243
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ R ++M++A A ++ITNPTH A+AL+Y +APV+VAKG+ IAKK+++
Sbjct: 244 RREKQREMTLNRMIKAMEEADVVITNPTHIAVALKYDINSMEAPVVVAKGEGFIAKKIKE 303
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E I I E LAR+L I IP Y+AVA+++ +Y
Sbjct: 304 KARELKIEIVENKPLARALNATTEIGEEIPVDLYQAVAEVLAFLYK 349
>gi|315296540|gb|EFU55837.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 16-3]
Length = 382
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|167470753|ref|ZP_02335457.1| flagellar biosynthesis protein FlhB [Yersinia pestis FV-1]
Length = 386
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L ++P ++ + ++ + +
Sbjct: 60 MVAQGL-HFGHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|153947600|ref|YP_001401303.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
31758]
gi|152959095|gb|ABS46556.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
31758]
Length = 386
Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L ++P ++ + ++ + +
Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L + + D+ + KL+M+KQ+I+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLLPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|291283062|ref|YP_003499880.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
CB9615]
gi|209767298|gb|ACI81961.1| flagellar biosynthesis protein FlhB [Escherichia coli]
gi|209767304|gb|ACI81964.1| flagellar biosynthesis protein FlhB [Escherichia coli]
gi|290762935|gb|ADD56896.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
CB9615]
gi|320641734|gb|EFX11122.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
G5101]
gi|320647094|gb|EFX15927.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
493-89]
gi|320652377|gb|EFX20675.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
H 2687]
gi|320657978|gb|EFX25740.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658551|gb|EFX26245.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668449|gb|EFX35276.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
LSU-61]
Length = 382
Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|295097231|emb|CBK86321.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 381
Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D KTE P+ + + A EG P SRE + + +L ++ S + S
Sbjct: 1 MSEESESD-KTEDPTPHRKQKAREEGQVPRSRELTTLAMLLVGWGLIVGAGSHLATQLES 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + + + D +++ L A ++P + I + I +
Sbjct: 60 ILHNGL-TFDRLLIRDPQNMLHRAASLLSMAFLAILPFAGGLYVTAITAPSIIGGLNASS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K + K+++ GIKR++S + +KS +K++L T + L N ++ +
Sbjct: 119 KALKVNLKKLNPVTGIKRLFSAQMVSEMIKSILKVLLAATGGGLFLLLNKSRFINLMYEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++ ++L + + D+ + + KL+MS+QEIKDE K G+P
Sbjct: 179 LGGALNDISNLLIGCMLYVILSLIPMVAFDVIYQLWSNFKKLRMSRQEIKDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA
Sbjct: 239 HIKGRVRQIQRQMAQSRMMAEVPTADVVVNNPTHYSVALKYQEGTMGAPIVVASGSGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+ +P+ E P LAR+L++ +P Y AVA+++ +Y +
Sbjct: 299 LRIREMAEENRVPMLEAPPLARALYRHCEPGQPVPGELYNAVAEVLAWVYSLR 351
>gi|300917538|ref|ZP_07134195.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
gi|300415243|gb|EFJ98553.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
Length = 382
Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|297569688|ref|YP_003691032.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
AHT2]
gi|296925603|gb|ADH86413.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
AHT2]
Length = 353
Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ +++ +A +G+ S E + +LA +I L F VT
Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARKKGDVAKSMEVPSAAVLLAGVIVLYFTGERMFNQVTG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + L ++ + +S ++ P +L + + + +Q +
Sbjct: 61 MMQFYLGNLDTLNL-SPGNMPAISRQALISIFDVLWPLMLTVFIVALLANYMQIGVLFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +++ +G R++S L NF KS K+ +VG + + +L +
Sbjct: 120 EKMKPKLEKIDPLKGFGRLFSKQALANFFKSMAKMGVVGYVAYSEVKRALNEILPLMDKA 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+ I+ T + + L IA + +D + Q+ K+KM+KQ++KDE KQ+ G+P
Sbjct: 180 PYPIVMFMTETAFWIFLKCALAIAIIAAIDYAFQRWQFMEKMKMTKQDMKDEGKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R ++I R +MM +A +++TNPT A+A++Y AP ++AKG ++A
Sbjct: 240 HVKGRIRAIQTEMARKRMMAEVPKADVVVTNPTRLAIAIKYDALTMPAPKVLAKGAGVVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH +PI E+ LA++L++ V I+ IP ++AVA+++ +Y+ +
Sbjct: 300 GKIREIAQEHEVPIVEDKPLAQALYQTVEIDQTIPENLFQAVAEVLAYVYNLR 352
>gi|301018276|ref|ZP_07182787.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
gi|331663378|ref|ZP_08364288.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
gi|300399746|gb|EFJ83284.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
gi|331059177|gb|EGI31154.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
Length = 382
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + ++ + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILVVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|260776470|ref|ZP_05885365.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607693|gb|EEX33958.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 376
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F ++ +
Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGAIALMWFGESLARALYT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + + S ++ L++ + + ++
Sbjct: 60 VMGRLFD-LSRDEIFDLPKLFDIALGSMGSLLGPLLLILVVLFIAALIGAAGIGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P + +++ G+KR+ + + V +KS +K+ LV + + +
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELLKSILKVTLVSGVAFYLIDAAQEDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMSEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351
>gi|27365293|ref|NP_760821.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus CMCP6]
gi|320155677|ref|YP_004188056.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
gi|27361440|gb|AAO10348.1| flagellar biosynthetic protein FlhB [Vibrio vulnificus CMCP6]
gi|319930989|gb|ADV85853.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
Length = 376
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D S + + + + ++ L + ++
Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +I+TNP H+++ALRY Q + APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351
>gi|330720472|gb|EGG98776.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC2047]
Length = 378
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 181/352 (51%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D+ KTE + K++EDA +G+ P S+E + + +L LL F +++
Sbjct: 1 MAESDSGQEKTEEATPKRLEDAKKKGDIPRSKELNTTAILLGGTGALLAFGGGISAGLSN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D ++ L + +IP ++ M+ I + V++
Sbjct: 61 MMSANFR-FSRDDIFDPQVMLIHLGQSMAESMMALIPFFIVVMLAAIIGPIALGGWVMSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +R+S GIKR+++ L+ +K+ K +LV T+ + L +L +
Sbjct: 120 KSLAPKGERISPLAGIKRMFAKQALMELLKTIAKFLLVATLSLVILDFMTNDILAIAKED 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H V ++ + + ++++D+ + KLKM+ QE+KDE+K + G P
Sbjct: 180 TIPAMAHTLRIVGWSVLAMSCTMILISIIDVPFQISSHAKKLKMTMQEVKDEMKNTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R + + + +MM A A ++ITNP HYA+AL+Y AP+LVAKG + IA
Sbjct: 240 EVKSRIRQLQYDMAQGRMMSAVPEADVVITNPEHYAVALKYNSDNMGAPLLVAKGADHIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA H+IP+ E P LAR++F + IP Y AVAQ++ ++
Sbjct: 300 FKIREIAKAHDIPVLEAPPLARAVFYSTELEQEIPAGLYVAVAQVLAYVFQL 351
>gi|320198575|gb|EFW73175.1| Flagellar biosynthesis protein FlhB [Escherichia coli EC4100B]
Length = 382
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGLR-FDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|291278828|ref|YP_003495663.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
SSM1]
gi|290753530|dbj|BAI79907.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
SSM1]
Length = 359
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 195/353 (55%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M E + +TE + ++ + A EGN P SRE S L +I+L F+ I + +
Sbjct: 1 MPEKNDA-ERTEEATPRRRQKAREEGNVPKSRELSTAIIFLISVIFLYFYTPILIDNFSK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ S V L + +++ P L ++ G+ + Q +++
Sbjct: 60 LISHTLSKVGY--TLSKSATVELFNFVFQFYLKVLFPLFALLVVAGLLVNVAQFGFLISP 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P + R++ G++ ++S +LV +KS KI +VG + I + +L+ A+
Sbjct: 118 KALEPKWDRLNPINGLQNLFSKRSLVELIKSIFKIFVVGFVAYIIVRGKIGVILNLADAD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P S + V ++ I L I +++LD + Q+ LKM+KQE+K+E KQ G+P
Sbjct: 178 PFSSMVFFGKLVFELCFKIGLLILLMSILDFFYQKWQYEQDLKMTKQEVKEEFKQMEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+I+ R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ APV+VAKGQ L+A
Sbjct: 238 LIRQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDINKDRAPVVVAKGQRLMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA E+ + I E+P LAR+L+ QV I IP YKA+A+++ +Y K
Sbjct: 298 QKIKEIAKENGVFIHEDPPLARTLYSQVEIGDEIPENLYKAIAEILAIVYKMK 350
>gi|331653290|ref|ZP_08354295.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
gi|331049388|gb|EGI21460.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
Length = 382
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 190/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S+ +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSVQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGSENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|119469999|ref|ZP_01612804.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
gi|119446709|gb|EAW27982.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
Length = 376
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ KKIE++ +G S+E ++ I LL + + +
Sbjct: 1 MAE-DSGQEKTEEPTGKKIEESKKKGQVARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L S + + D + + + + ++ + + + + + GI + +
Sbjct: 60 IMGRML-SLNRNETYDTTKMFAVWSSVADALIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S +G KR++ V K+ +K ++V + + + +L +
Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFLVVASFAFFLINTFFDEILHLSIES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + HA + + + + + + +D + H + +LKM+ QE+KDE K S G+P
Sbjct: 179 APNNIIHALEILSWMFLALSCTLVIIAAIDAPYQSHTHHKQLKMTLQEVKDEYKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R + +MM+ A +++TNPTHY++AL+Y AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVVVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++RK+A +++PI E P L R+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MQIRKVAGGNDVPIVESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351
>gi|320194407|gb|EFW69038.1| Flagellar biosynthesis protein FlhB [Escherichia coli WV_060327]
Length = 382
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARPLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|28899010|ref|NP_798615.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus RIMD
2210633]
gi|153836930|ref|ZP_01989597.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
gi|260365244|ref|ZP_05777801.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
gi|260878794|ref|ZP_05891149.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AN-5034]
gi|260897389|ref|ZP_05905885.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
Peru-466]
gi|260899948|ref|ZP_05908343.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ4037]
gi|4322010|gb|AAD15913.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus]
gi|28807229|dbj|BAC60499.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus RIMD
2210633]
gi|149749703|gb|EDM60448.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
gi|308088249|gb|EFO37944.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
Peru-466]
gi|308094200|gb|EFO43895.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AN-5034]
gi|308107420|gb|EFO44960.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ4037]
gi|308115443|gb|EFO52983.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
gi|328474453|gb|EGF45258.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus 10329]
Length = 376
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ D + + + + L+ + +
Sbjct: 60 IMSRLFD-LKRDEIFDTTKLFDIALGAMTDLLFPLFLILITLFVAATIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K++LV + + + ++
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAMYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP HY++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|114332395|ref|YP_748617.1| flagellar biosynthesis protein FlhB [Nitrosomonas eutropha C91]
gi|114309409|gb|ABI60652.1| flagellar biosynthetic protein FlhB [Nitrosomonas eutropha C91]
Length = 376
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE S +++E + EG S+E + F+ ++A L S I +++
Sbjct: 1 MAD-DNDLERTEPASPRRLEKSREEGQVARSQELTTFTMLMAASGSLWVIGSLIIQKLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + ++ L L+L + P L ++ + S ++ + +
Sbjct: 60 LLESGL-QIEREVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIVALVSPMLLSGWLFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FKR++ G KRI+S + L+ +K+ K ++G + + + +LD I
Sbjct: 119 KALFPDFKRLNPVNGFKRIFSSHGLIELVKAIAKAAVIGGVAAGIIWSHKQDVLDLIGMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++I+ + L V+D+ + +L+MSK++++ E K+ G+P
Sbjct: 179 LDTGLTSMGRLIGLTFMLIVGAMLLLVVIDVPFQLWNHARQLRMSKEDLRKEAKEDEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+ R R +MM RA +++TNPTHYA+AL+Y AP +VAKG LIA
Sbjct: 239 QVKARIRSMQREMARRRMMAEVPRADVVVTNPTHYAVALKYQDHSMRAPKVVAKGSQLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ ++ +
Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYVFQLR 351
>gi|157161351|ref|YP_001458669.1| flagellar biosynthesis protein FlhB [Escherichia coli HS]
gi|170019775|ref|YP_001724729.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
gi|188494102|ref|ZP_03001372.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
gi|193069902|ref|ZP_03050851.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
gi|194439073|ref|ZP_03071156.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
gi|218695446|ref|YP_002403113.1| flagellar biosynthesis protein FlhB [Escherichia coli 55989]
gi|253773163|ref|YP_003035994.1| flagellar biosynthesis protein FlhB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161940|ref|YP_003045048.1| flagellar biosynthesis protein FlhB [Escherichia coli B str.
REL606]
gi|300822346|ref|ZP_07102487.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
gi|300928913|ref|ZP_07144417.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
gi|301645603|ref|ZP_07245532.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
gi|307138545|ref|ZP_07497901.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
gi|331642498|ref|ZP_08343633.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
gi|157067031|gb|ABV06286.1| flagellar biosynthetic protein FlhB [Escherichia coli HS]
gi|169754703|gb|ACA77402.1| flagellar biosynthetic protein FlhB [Escherichia coli ATCC 8739]
gi|188489301|gb|EDU64404.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
gi|192956802|gb|EDV87256.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
gi|194422032|gb|EDX38036.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
gi|218352178|emb|CAU97917.1| flagellar export pore protein [Escherichia coli 55989]
gi|242377601|emb|CAQ32357.1| flagellar biosynthesis protein FlhB, subunit of Flagellar Export
Apparatus and Flagellum [Escherichia coli BL21(DE3)]
gi|253324207|gb|ACT28809.1| flagellar biosynthetic protein FlhB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973841|gb|ACT39512.1| flagellar biosynthesis protein B [Escherichia coli B str. REL606]
gi|253978035|gb|ACT43705.1| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)]
gi|300463067|gb|EFK26560.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
gi|300525229|gb|EFK46298.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
gi|301076135|gb|EFK90941.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
gi|315617894|gb|EFU98492.1| flagellar biosynthetic protein FlhB [Escherichia coli 3431]
gi|323937138|gb|EGB33418.1| flagellar biosynthetic protein FlhB [Escherichia coli E1520]
gi|323961935|gb|EGB57534.1| flagellar biosynthetic protein FlhB [Escherichia coli H489]
gi|323972611|gb|EGB67814.1| flagellar biosynthetic protein FlhB [Escherichia coli TA007]
gi|331039296|gb|EGI11516.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
gi|332089613|gb|EGI94715.1| flagellar biosynthetic protein FlhB [Shigella boydii 5216-82]
gi|332343606|gb|AEE56940.1| flagellar biosynthetic protein FlhB [Escherichia coli UMNK88]
Length = 382
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|37680652|ref|NP_935261.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus YJ016]
gi|37199401|dbj|BAC95232.1| flagellar biosynthesis pathway, component FlhB [Vibrio vulnificus
YJ016]
Length = 376
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D S + + + + ++ L + ++
Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351
>gi|22034295|gb|AAL01537.1| FlhB [Escherichia fergusonii]
Length = 381
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE P+ + + A EG P SRE + S +LA LL + +
Sbjct: 1 MSEENDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLSMLLAGWGLLLVGGNYLAKQLQH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + + + D H++ L A ++P + + + + I ++
Sbjct: 60 LLHNGL-TFDRLLVSDPQHMLHHAAALLGMAFLAILPFVGGLFITALVTPSIIGGLNMSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K + K+++ GIKR++S + +KS +K++L G + L N ++ I
Sbjct: 119 KAIKFNLKKLNPLSGIKRLFSGQMVSEMVKSILKVLLAGIGGGLFLWLNKAKFINLIFEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + +++I+L + + D+ + + KL+MS +EIKDE K G+P
Sbjct: 179 LGMALADISALLIGCMLVIILSLIPMVAFDVIYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA
Sbjct: 239 QIKARVRQLQRQMAQQRMMTDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ +Y K
Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351
>gi|94264043|ref|ZP_01287843.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
gi|94266371|ref|ZP_01290070.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
gi|93453023|gb|EAT03511.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
gi|93455554|gb|EAT05741.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
Length = 356
Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ +++ +A N+G+ S E + +LA +I L F VT
Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARNKGDVAKSMEVPSAAVLLAGVIVLYFTGEYMFNRVTG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L++ ++ + + + + L ++ P +L + + + +Q +
Sbjct: 61 MMQFYLSNLHDIEI-SAASMPNITRQVMLLIYTVLWPLMLTVFLAALAANYLQVGFLFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ +G+ R++S L N KS K LVG I + +L
Sbjct: 120 EKITPKLEKIDPLKGLGRLFSKQTLNNAFKSIAKFSLVGYIAYSEIIRAMPEILPLADKA 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+ IL T + + + + ++D + Q+ K+KM+KQ++KDE KQS G+P
Sbjct: 180 PYPILVFMVETAFWIFLKCAVLFILIALIDYAFQRWQFMEKMKMTKQDMKDESKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +SI + +MM +A +++TNPTH A+A++Y AP ++AKG ++A
Sbjct: 240 HVKGRIRSIQMEMAKKRMMAEVPKADVVVTNPTHLAVAIKYDALTMKAPEVLAKGAGVVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++++A EH +P+ E+ LA++L++ V I +IP ++AVA+++ +Y+ K
Sbjct: 300 NKIKEVAREHQVPVVEDKPLAQALYQNVEIGGSIPENLFQAVAEVLAYVYNLK 352
>gi|312969924|ref|ZP_07784107.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
gi|310338209|gb|EFQ03298.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
Length = 382
Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|317048539|ref|YP_004116187.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
gi|316950156|gb|ADU69631.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
Length = 384
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + ++KTE+P++ ++E A +G P SRE + +L+ ++ L + + S
Sbjct: 1 MADESSDEDKTESPTAHRLEKARQDGQIPRSRELTSLLMMLSGIMILWLGGTSIARRLAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + D IV ++ L A V+P + ++ I + ++ V++
Sbjct: 61 MVATGFR-FDHGMVTDDKVIVAHISSLIGQAVLAVLPLMAGLVLVAIAAPMLLGGIVISG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+KR+ S +K+ +K +LVG + + ++ ML IS +
Sbjct: 120 KSLSPDFTKLNPLSGLKRMVSGQTWAELLKAILKAVLVGLVAGWYIWSHWPEMLRLISES 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L H + ++++L + + D+ W + ++ KL+MS+Q+I+DE KQ G+P
Sbjct: 180 PMNALEHGMDMIAICCVLVMLGLIPMVGFDVFWQLYSYFKKLRMSRQDIRDEFKQQEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + AP ++AKG +A
Sbjct: 240 HVKGRIRQAMRAAARRRMMADVPKADVIVTNPTHYSVALQYNDKKMSAPKVIAKGAGEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH +PI E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 300 LKIRELGKEHRVPILEAPPLARALYRHTEIGQFIPGALYAAVAEVLAWVWQLR 352
>gi|309702103|emb|CBJ01418.1| flagellar biosynthesis protein FlhB [Escherichia coli ETEC H10407]
Length = 382
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSDMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|90021814|ref|YP_527641.1| flagellar biosynthesis protein FlhB [Saccharophagus degradans 2-40]
gi|89951414|gb|ABD81429.1| flagellar biosynthetic protein FlhB [Saccharophagus degradans 2-40]
Length = 376
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P++K+ E A +G P S+E + + ++ + L F +
Sbjct: 1 MAEEDSAQEKTEEPTAKRQEKAREDGQIPRSKELTTSAVLIVGCVGLYMFGGQIAQGLAD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + D + ++ L +++IP + ++ I + + +
Sbjct: 61 ILKFNF-TIEREAIFDPNAMLGHLGSSFYLGLKVLIPLFAVLLVAAIAGPIALGGWLFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ +LV +K+ K+ +V + L +L
Sbjct: 120 KSLAPKLNRMDPVAGLKRMFSVKSLVELVKAIGKVGVVVAFAFVLLNYMKEDLLGLGFEG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ + I+I + + +DI + KL+M++QEIKDE+K S G P
Sbjct: 180 VERGMAHSVYLSIIAAIIISVSTLVIAAVDIPFQIWDNVKKLRMTRQEIKDEMKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + +++MM A A ++ITNPTHY++AL+Y + P+L+AKG + +A
Sbjct: 240 EVKGRIRQLQYEMAQNRMMAAVPEADVVITNPTHYSVALKYDPNSMETPILLAKGVDHMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA + I + P LAR+++ ++ IP Y AVAQ++ ++
Sbjct: 300 MKIREIAKANKIEFIQSPLLARAIYHTTEVDEEIPSGLYVAVAQVLAYVFQI 351
>gi|146307831|ref|YP_001188296.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
gi|145576032|gb|ABP85564.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
Length = 378
Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ K+E P+SK++E++ +G S+E + + L + L+ F + +
Sbjct: 1 MAESESGAEKSEEPTSKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + L + L A + P L ++ + + + +
Sbjct: 61 LMRGNF-SLPREVLMHEGSMALYLLASGKHALVAIQPLFLALLIASVIGPIALGGWLFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R++ G+KR++S+ LV +K+ K +++ + + L + +L +
Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELLKALAKFLVILAVALVVLALDQDDLLAIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + +D+ + KLKM+KQE++DE K + G P
Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLKMTKQEVRDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP+L+AKG + +A
Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAQEHKVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352
>gi|169827139|ref|YP_001697297.1| flagellar biosynthesis protein FlhB [Lysinibacillus sphaericus
C3-41]
gi|168991627|gb|ACA39167.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
Length = 362
Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats.
Identities = 103/347 (29%), Positives = 181/347 (52%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +DA +G S++ + +L I+L FF + +
Sbjct: 13 SGEKTEKATPKKRQDARKKGQVVKSQDVTSAIVMLMVFIFLFFFAGSLRDELLAFFRQTF 72
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + I ++ L + + +++P + + ++ + +Q + L +K
Sbjct: 73 IHNIRIETLTIDSVMHLFIDTLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 132
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P L
Sbjct: 133 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWITLI 192
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V + I L + +++LD + + LKMSKQ+IKDE K S G+P+IK++
Sbjct: 193 TVGKLVGIMGIAASLVLLCVSILDWLYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 252
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ I
Sbjct: 253 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEESMDAPRVIAKGTDFIAQKIKLI 312
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K
Sbjct: 313 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 359
>gi|162139338|ref|YP_689375.2| flagellar biosynthesis protein FlhB [Shigella flexneri 5 str. 8401]
Length = 397
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|256022455|ref|ZP_05436320.1| flagellar biosynthesis protein FlhB [Escherichia sp. 4_1_40B]
Length = 382
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|254228444|ref|ZP_04921870.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
gi|262393601|ref|YP_003285455.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
gi|151939032|gb|EDN57864.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
gi|262337195|gb|ACY50990.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
Length = 376
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ D + + + + L + +
Sbjct: 60 IMSRLFD-LQREEIFDTAKLFDIALGAMTDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K++LV + + + ++
Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|330502779|ref|YP_004379648.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
gi|328917065|gb|AEB57896.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
Length = 378
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +K+E P+ K++E++ +G S+E + + L + L+ F + +
Sbjct: 1 MAESESGADKSEEPTGKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + L + L A V P LL ++ + + + +
Sbjct: 61 IMRGNF-SLPREVLMSERSMALYLLASGKEALLAVQPFLLALLIASVAGPIALGGWLFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R++ G+KR++S+ LV +K+ K +++ + + L + +L +
Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELVKALAKFLVILAVALVVLAIDQDDLLAIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + +D+ + KL M+KQE++DE K + G P
Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLMMTKQEVRDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP+L+AKG + +A
Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAQEHQVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352
>gi|91223558|ref|ZP_01258823.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
gi|269965690|ref|ZP_06179803.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
gi|91191644|gb|EAS77908.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
gi|269829758|gb|EEZ83994.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
Length = 376
Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ D + + + + L + +
Sbjct: 60 IMSRLFD-LQREEIFDTAKLFDIALGAMSDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K++LV + + + ++
Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|24113260|ref|NP_707770.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 301]
gi|30063328|ref|NP_837499.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str.
2457T]
gi|24052262|gb|AAN43477.1| putative part of export apparatus for flagellar proteins [Shigella
flexneri 2a str. 301]
gi|30041580|gb|AAP17308.1| putative part of export apparatus for flagellar proteins [Shigella
flexneri 2a str. 2457T]
gi|281601322|gb|ADA74306.1| putative part of export apparatus for flagellar proteins [Shigella
flexneri 2002017]
gi|313650088|gb|EFS14501.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2a str.
2457T]
gi|332757344|gb|EGJ87681.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2747-71]
gi|332757435|gb|EGJ87770.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-671]
gi|332766606|gb|EGJ96810.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2930-71]
gi|333017652|gb|EGK36964.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-304]
Length = 397
Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|296103646|ref|YP_003613792.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058105|gb|ADF62843.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 381
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE P+ + + A EG P SRE + +LA LL +
Sbjct: 1 MSEQNDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLLMLLAGWGLLLVAGGWLAKQLLH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + + + D ++ L A ++P + + + + + ++
Sbjct: 60 LLHNGL-TFDRLLVSDPQQMLHHAGSLLGMAFLALLPFVGGLFLTAVATPSLIGGLNMSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K + K+++ GIKR++S + +KS +K+ L G + L N + +
Sbjct: 119 KALKFNVKKLNPISGIKRLFSAQMVSEMVKSILKVTLAGIGGGLFLWFNKGKFISLMYEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + +++I+L + + D+ + + KL+MS +EIKDE K G+P
Sbjct: 179 LRMALGDISALLMGCMLVIILSLIPMVAFDVVYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK++ + + R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA
Sbjct: 239 LIKSKVRQLQRQMAQQRMMSDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ +Y K
Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351
>gi|90411036|ref|ZP_01219050.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
gi|90328249|gb|EAS44560.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
Length = 376
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE +++K+E A +G S+E + + ++ + L+++ ++
Sbjct: 1 MAESD-GQERTEDATARKLEQAREKGQVARSKELASVAVLVMGAVSLMWYGEGLGKALAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S ++ ++ D++ + ++ S + L++ + +
Sbjct: 60 IMTQMF-SLSREEIYDLNRLFSIMLTAIWSVVFPLGLVLIVLFTAALIGAAGLGGVSFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + + V +KS +K++LV + + +
Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVTGVAAYLMYSSLNDFFLLSLEI 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++HA + + +++I + + +D+ + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY + AP+++AKG + A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHFSVALRYDPKLDSAPIVIAKGVDHAA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ K
Sbjct: 299 LKIREIANKHNIDIVPAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351
>gi|3169254|gb|AAC17834.1| flagellar protein FlhB [Escherichia coli]
Length = 382
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+R R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRARARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPRLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|212709483|ref|ZP_03317611.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
30120]
gi|212687821|gb|EEB47349.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
30120]
Length = 383
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE P+ K + A ++G S+E S +LA + L +
Sbjct: 1 MSDE-SDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLATQLRQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L++ ++ L + A ++P + + GI + + + N
Sbjct: 60 IMRQGFI-FDGHYLQNTGLMLSYLGRVVSEALFALLPIIGGLALVGISASSLVGGLLFNS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+++ +G+KRI+S+N L K+ +K + VG +I L +++ ++L +
Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAILKCVFVGLGASIFLWQSWPSLLHLVMEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P
Sbjct: 179 PTTALANALEKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG +IA
Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y +
Sbjct: 299 QRIKEIGAEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351
>gi|156975417|ref|YP_001446324.1| flagellar biosynthesis protein FlhB [Vibrio harveyi ATCC BAA-1116]
gi|156527011|gb|ABU72097.1| hypothetical protein VIBHAR_03148 [Vibrio harveyi ATCC BAA-1116]
Length = 376
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T+ ++ D + + + + L+ + + +
Sbjct: 60 IMSRLFD-LTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|83654182|gb|ABC38245.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
E264]
Length = 459
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ +TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 61 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 120
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL ++P L L + + + + +++
Sbjct: 121 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 179
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 180 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 239
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 240 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 299
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 300 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 359
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 360 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 409
>gi|86146123|ref|ZP_01064449.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218708836|ref|YP_002416457.1| flagellar biosynthesis protein FlhB [Vibrio splendidus LGP32]
gi|85836070|gb|EAQ54202.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218321855|emb|CAV17833.1| Flagellar biosynthetic protein flhB [Vibrio splendidus LGP32]
Length = 376
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + K+++ A +G S+E + S ++ I L++F ++
Sbjct: 1 MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAIALMWFGESMAKALFE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + ++ + ++ + L+ + + ++
Sbjct: 60 TMQRLF-SLSREEVFDTTKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGINFSM 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LV + + + ++
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMEV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQEIKDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEHKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q ++ APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPVVVAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREIARENDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351
>gi|117617532|ref|YP_855917.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117558939|gb|ABK35887.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 376
Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats.
Identities = 92/354 (25%), Positives = 172/354 (48%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE P+ K+++ A +G S+E S +LA + LL ++
Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVK 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + + D + ++ +L L + +L + ++ +
Sbjct: 59 VLTMGF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNILMGGMNFSS 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P + ++S GIKR++ + +LV +KS K++ + L+ + +L+
Sbjct: 118 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P
Sbjct: 178 YPGGIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLI 299
+K R + + +MM +A ++ITNPTHY++AL+Y AP +VAKG + I
Sbjct: 238 EVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEI 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K
Sbjct: 298 AMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351
>gi|153834147|ref|ZP_01986814.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
gi|148869517|gb|EDL68515.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
Length = 376
Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T+ ++ D + + + + L+ + + +
Sbjct: 60 IMSRLFD-LTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|300935856|ref|ZP_07150814.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
gi|300458968|gb|EFK22461.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
Length = 382
Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDEIDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ I S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|332756021|gb|EGJ86374.1| flagellar biosynthetic protein FlhB [Shigella flexneri 4343-70]
gi|333003254|gb|EGK22800.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-218]
Length = 397
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQGEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|167620815|ref|ZP_02389446.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
Bt4]
Length = 401
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D + ++ LSL ++P L L + + + + +++
Sbjct: 60 MLHTAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351
>gi|126653730|ref|ZP_01725648.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
gi|126589694|gb|EAZ83830.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
Length = 365
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 103/347 (29%), Positives = 182/347 (52%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +DA +G S++ + +L I+L+FF + +
Sbjct: 16 SGEKTEKATPKKRQDARKKGQVIKSQDVTSAIVMLMVFIFLIFFAGSLRDELLAFFRQTF 75
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + I ++ L + + +++P + + ++ + +Q + L +K
Sbjct: 76 IHNIRIETLTIDSVMHLFIETLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 135
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P L
Sbjct: 136 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWMTLI 195
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V + I L + +++LD + + LKMSKQ+IKDE K S G+P+IK++
Sbjct: 196 TVGKLVGIMGIAASLVLLCVSILDWMYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 255
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ I
Sbjct: 256 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEENMDAPRVIAKGTDFIAQKIKLI 315
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K
Sbjct: 316 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 362
>gi|197285519|ref|YP_002151391.1| flagellar biosynthesis protein FlhB [Proteus mirabilis HI4320]
gi|227356013|ref|ZP_03840404.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
gi|194683006|emb|CAR43467.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227163790|gb|EEI48698.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
Length = 382
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 173/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K E A +G S+E S IL + L + +
Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGGVSLLWMSGRFITRELYA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + + ++ L A + P L ++ IG + +
Sbjct: 60 MLTEGF-TFNHHIIGNENLLIPRFASLMKQAVFALSPVFLGLVLVAIGGSAVLGGINFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+ + G+KRI+S+N L K+ +K + VG T+ L N+ +L I+
Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSLFVGLAATVFLWHNWNDILHLITLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P S L +A + + + + + + DI + KL+M++QEIKDE KQ G+P
Sbjct: 179 PLSALANAMQLLIFAVYIAVFMLIPMVAFDIIFQIRSHLKKLRMTRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA
Sbjct: 239 QLKARIRQQQHEMSRRRMMADVPKADVIVTNPTHYAVALQYN-DKMVAPKVLAKGAGAIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++I EH IP+ E P LAR+L++ I AIP Y AVA+++ +Y +
Sbjct: 298 LKIKEIGAEHRIPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 350
>gi|149377872|ref|ZP_01895601.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
algicola DG893]
gi|149357814|gb|EDM46307.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
algicola DG893]
Length = 378
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E D KTE + +++E A +G S+E + + +LA LL F + S+
Sbjct: 1 MAEENDNSQEKTEEATPRRLEKAREDGQTARSKELATMAVLLAGAGGLLMFGASMGASLE 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
S + + + D H+ L + A+ + P L+L ++ + + +++
Sbjct: 61 SIMRDSFV-LERSAIFDTRHMSVQLMASAKEAALSLAPLLILLLVAAVAGSIGIGGLLVS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P R+ +G+KR++S+ +L+ +K+ +K+ LV + + L +L
Sbjct: 120 GKAIAPKLNRMDPLKGLKRMFSMRSLIELVKAILKVGLVMAVAILILNLRTDDLLSIAEE 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S + H +T+ ++ + +D+ + KL+M+KQE+KDE K + G
Sbjct: 180 PARSAMEHVVWTMAWSFFILACATIVIAAIDVPFQIFDHQKKLRMTKQEVKDEYKDTEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K + + + R + +MM+ A ++ITNPTHYA+AL+Y Q AP++VAKG +
Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPGADVVITNPTHYAVALKYDQKNMAAPIVVAKGSDET 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+ +IA E+ + I P LAR+++ I IP Y A+AQ++ ++ +
Sbjct: 300 AFKIMEIARENKVEILRTPPLARAVYHNTDIGGEIPDGLYMAIAQVLAYVFQLR 353
>gi|311105926|ref|YP_003978779.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
gi|310760615|gb|ADP16064.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
Length = 384
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTEA S +++E A EG SRE F + A + + S ++T
Sbjct: 1 MAEE-SDLEKTEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGAIWAGGSSLYRTLTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L QR + D +V A +++P L + + S ++ V++
Sbjct: 60 VLRNGLG-FDQRIVADPGVMVERAVEGFGQALLVLLPIFGLLAVIAVLSSVLLGGLVISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ +F ++S G+KR++S +V +K+ K +LVG + + + ML +
Sbjct: 119 KPLQFNFSKLSPISGVKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLSLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V I+ + + +LD+ W KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALVKALTLVAMCCAFIVASLIVIVMLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R R +MM +A +++TNPTHYA+AL+Y + ++ AP ++AKG LIA
Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEEKSGAPRVLAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A E+ IP E P LAR+L + V I IP Y AVA+++ ++ +
Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVEIGQEIPAELYTAVAEVLAWVFQLR 351
>gi|121601443|ref|YP_994701.1| flagellar biosynthesis protein FlhB [Burkholderia mallei SAVP1]
gi|124383615|ref|YP_001027675.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
10229]
gi|126450428|ref|YP_001082647.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
10247]
gi|238563575|ref|ZP_00438645.2| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
4]
gi|251767891|ref|ZP_02268743.2| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
gi|254175097|ref|ZP_04881758.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
10399]
gi|254186354|ref|ZP_04892871.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
Pasteur 52237]
gi|254194732|ref|ZP_04901163.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
gi|254201433|ref|ZP_04907797.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
gi|254206775|ref|ZP_04913126.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
gi|254357202|ref|ZP_04973476.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
2002721280]
gi|121230253|gb|ABM52771.1| flagellar biosynthetic protein FlhB [Burkholderia mallei SAVP1]
gi|124291635|gb|ABN00904.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
10229]
gi|126243298|gb|ABO06391.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
10247]
gi|147747327|gb|EDK54403.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
gi|147752317|gb|EDK59383.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
gi|148026266|gb|EDK84351.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
2002721280]
gi|157934039|gb|EDO89709.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
Pasteur 52237]
gi|160696142|gb|EDP86112.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
10399]
gi|169651482|gb|EDS84175.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
gi|238520421|gb|EEP83881.1| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
4]
gi|243061442|gb|EES43628.1| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
Length = 401
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D + ++ LSL + P L L + + + + +++
Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351
>gi|317403765|gb|EFV84247.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans
C54]
Length = 384
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTEA S +++E A EG SRE F + + + ++
Sbjct: 1 MAEE-SDLEKTEAASPRRLEKAREEGQIARSRELGTFMMLAVGVGAIWAGGGTIYKGLSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LA QR + D +V + A +++P L + + S ++ V++
Sbjct: 60 VLRNGLA-FDQRVVADPGVMVEQAVNGFGHALMVILPIFGLLAVIAVLSSVLLGGIVISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F ++SL G+KR++S +V +K+ K +LVG + L + ML +
Sbjct: 119 KPLSPNFSKLSLFAGLKRMFSAQTVVELIKALAKAMLVGGVAVWILWRYHDDMLGLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V I+ + + +LD+ W KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALTKALSLVAMCCAFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
K R + R R +MM +A +++TNPTHYA+AL+Y + +N AP ++AKG LIA
Sbjct: 239 HTKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYEEDKNGAPRVLAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 AKIRELAAEHRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQLR 351
>gi|126441654|ref|YP_001060838.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
gi|126221147|gb|ABN84653.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 668]
Length = 401
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D + ++ LSL + P L L + + + + +++
Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351
>gi|316932838|ref|YP_004107820.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
DX-1]
gi|315600552|gb|ADU43087.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
DX-1]
Length = 357
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 108/350 (30%), Positives = 188/350 (53%), Gaps = 2/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D KTE P+ KK++DAL G+ S+E + + I + L F + L
Sbjct: 2 SDDSDEKTEEPTQKKLDDALKRGDVAKSQEVNTWFLIAGGTLVLSSFHGSIGAGILGPLR 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L+ + +++ I + + + + + +P L+ + I LIQ V + +
Sbjct: 62 SLIEKSWMLRVDGDGLIALTKSLMYATVAAIGVPLFLVMITAVI-GNLIQHRLVFSAEGL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P ++S +G KR++ L NF+K K++ +G ++ L + + ++ + +
Sbjct: 121 TPKLSKLSPLQGAKRVFGKQALANFLKGLFKVVALGIVMVAVLYPEHDRLDALLTMDVAA 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+L K+L ++ +A + V D + Y QW+ K KMS QEIKDE KQS G+P IK
Sbjct: 181 LLGVTVTLTLKLLGAVVAMLAFVAVADYFFQYRQWHEKQKMSLQEIKDEYKQSEGDPHIK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + +A K+
Sbjct: 241 GRLRQLRYQRMKKRMMAEVPGASVVITNPTHFSVALKYERG-MPAPICVAKGVDAVAFKI 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A E+N+PI E LAR+L+ V I+ IP Y+AVA++I + + K
Sbjct: 300 REVAKENNVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349
>gi|229591837|ref|YP_002873956.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens SBW25]
gi|229363703|emb|CAY51084.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens SBW25]
Length = 378
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + +
Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLME 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A + L + + L H A V P L+ ++ + + +
Sbjct: 61 LMKHNFALP-REVLLNPDAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALGGWLFAA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S LV +K+ K IL+ + + L+ + +L
Sbjct: 120 GSMAPKFSRMNPGAGLKRMFSAKALVELLKALAKFILILFVALMVLSSDIDDLLRIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + H+ V + + + + +D + + KL M+KQE++DE K G P
Sbjct: 180 LESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + KMM + A +IITNPTHYA+AL+Y + AP+L+AKG + A
Sbjct: 240 EVKQRIRQLQREMSQRKMMASVPDADVIITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H+I + E P LARS+F ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAVAHDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|148976426|ref|ZP_01813132.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
gi|145964249|gb|EDK29505.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
Length = 376
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++
Sbjct: 1 MAESD-GQERTEDATPRRLQQAKEKGQVARSKELASASVLIVGAVALMWFGESMAKALFE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + ++ + ++ + L+ + + ++
Sbjct: 60 AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFIAAVIGAAGVGGINFSM 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LV + + + ++
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELIKSILKVALVSGMAVYLIQASQHDLMQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREIAREHDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351
>gi|88800470|ref|ZP_01116034.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
MED297]
gi|88776800|gb|EAR08011.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
MED297]
Length = 378
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 176/352 (50%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ +K+E A +G+ S+E + + ++ I L F ++
Sbjct: 1 MAEQDTSQEKTEEPTPRKLEKAKEDGDIARSKELNTSAILIVSAICFLVFGRMMGTTMMR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S R D+ ++ ++ A ++P ++ + + + +
Sbjct: 61 IM-EFCFSFDPRASWDVIVAGEYVSVVAGEALLSIVPLFGFLLLAALFAPIGLGGWNFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ GIKR++S+N+LV +K + K+I+V T + L L +
Sbjct: 120 KALAPKGSRMNPLSGIKRMFSMNSLVELLKGWGKVIVVATAAILVLISLKNEFLSMVFQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + HA + +++ + ++DI + + KL+M+ QEIK+E K + G P
Sbjct: 180 TESAITHAVEVIAWSFLLLAASTVLIAIVDIPFQIYSHTKKLRMTMQEIKEEYKNTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K + R +MM A +IITNPTHYA+AL+Y AP++VAKG + +A
Sbjct: 240 EVKAKIKQLQREMANRRMMSDVPEADVIITNPTHYAVALKYDPNAMPAPLMVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+I E+++P+ E P+LARS++ I IP Y AVAQ++ IY
Sbjct: 300 FKIREIGQEYDVPVLEMPALARSIYHHTRIGDEIPEGLYVAVAQVLAYIYQI 351
>gi|311992333|gb|ADQ26740.1| protein export component [Aeromonas hydrophila]
Length = 375
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 168/350 (48%), Gaps = 2/350 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D +TE P+ K+++ A +G S+E S +LA + LL ++ L +
Sbjct: 2 DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKVLTM 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ + + D + ++ +L L + +L + + + +
Sbjct: 62 GF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTLMGGMNFSSEAML 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P + ++S GIKR++ + +LV +KS K++ + L+ + +L+
Sbjct: 121 PKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEGYPGG 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P +K
Sbjct: 181 IIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVKG 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKM 303
R + + +MM +A ++ITNPTHY++AL+Y AP +VAKG + IA K+
Sbjct: 241 RIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEIAMKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K
Sbjct: 301 REIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 350
>gi|77359754|ref|YP_339329.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
TAC125]
gi|76874665|emb|CAI85886.1| Flagellar biosynthetic protein flhB, putative part of export
apparatus for flagellar proteins [Pseudoalteromonas
haloplanktis TAC125]
Length = 376
Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE P+SKK+EDA +G S+E ++ I LL + + +
Sbjct: 1 MSE-DSGQEKTEEPTSKKVEDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L S + + D + + + ++ + + +L+ ++ + +
Sbjct: 60 VMGRML-SLNRNETYDTTKMFAVWGEVADALMFPMAMFVLIIVLAAFIGNTMLGGFNFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S +G KR++ V +KS +K LV + + + +L +
Sbjct: 119 QAAAPKASKMSPAKGFKRMFGPQAGVELLKSLLKFGLVASFAVFLINTFFDEILHLSVES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA + + + + + + +D + + +LKM+ QE+KDE K S G+P
Sbjct: 179 APGNIIHALEILAWMFLGLSCTLIIIAAIDAPFQSYNHNKQLKMTLQEVKDEYKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R + +MM+ A +I+TNPTHY++AL+Y AP++VAKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVVAKGIDEMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++RKIA + +PI E PSL R+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MQIRKIAIGNEVPILESPSLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351
>gi|126454601|ref|YP_001068145.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
1106a]
gi|134281603|ref|ZP_01768311.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
gi|167920930|ref|ZP_02508021.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
BCC215]
gi|217423909|ref|ZP_03455409.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
gi|226193093|ref|ZP_03788703.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
Pakistan 9]
gi|237814235|ref|YP_002898686.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
MSHR346]
gi|242317683|ref|ZP_04816699.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1106b]
gi|254183876|ref|ZP_04890467.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1655]
gi|254298802|ref|ZP_04966253.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
406e]
gi|126228243|gb|ABN91783.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1106a]
gi|134247270|gb|EBA47356.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
gi|157808470|gb|EDO85640.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
406e]
gi|184214408|gb|EDU11451.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1655]
gi|217392972|gb|EEC32994.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
gi|225934693|gb|EEH30670.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
Pakistan 9]
gi|237506461|gb|ACQ98779.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
MSHR346]
gi|242140922|gb|EES27324.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1106b]
Length = 401
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D + ++ LSL + P L L + + + + +++
Sbjct: 60 MLHAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351
>gi|268589991|ref|ZP_06124212.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
gi|291314710|gb|EFE55163.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
Length = 383
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE P+ K + A ++G S+E S +LA + L +
Sbjct: 1 MSDE-SDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L++ ++ L + A ++P + + GI + + V N
Sbjct: 60 ITRQGFI-FDGHYLQNTGLMISYLGRVVSEALFALLPVIGGLALVGISASSLVGGLVFNS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+++ +G+KRI+S+N L K+ +K + VG I L +++ ++L + +
Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAVLKSLFVGLGAFIFLWQSWPSLLHLVMES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P
Sbjct: 179 PVTALSNALQKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG ++A
Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPNADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y +
Sbjct: 299 QRIKEIGEEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351
>gi|163801858|ref|ZP_02195755.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
gi|159174366|gb|EDP59170.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
Length = 376
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+D +TE + K+++ A +G S+E + S ++ I L++F S+ +
Sbjct: 1 MSESD-GQERTEDATPKRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T+ ++ D + + + + L+ + + +
Sbjct: 60 IMSRLFD-LTRDEIFDTAKLFDIAFGAMADLLFPLFLILITLFIAALIGAAGVGGVSFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVGLVAGMAIYLIQASQSDLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA T+ +++I + + +DI + Q ++LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDTLLNFILLISCSLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q + AP+++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPIVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVARENDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
15579]
gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
15579]
Length = 587
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 187/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 240 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 299
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 300 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 358
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 359 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLKDNYLKILNLGTLRPWYMIT 418
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + ++V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 419 GLLSLAISIFFKITLIMLFISVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 478
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 479 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DSAPKVVAKGADYVAIKIKDI 537
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 538 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 584
>gi|237653600|ref|YP_002889914.1| flagellar biosynthesis protein FlhB [Thauera sp. MZ1T]
gi|237624847|gb|ACR01537.1| flagellar biosynthetic protein FlhB [Thauera sp. MZ1T]
Length = 380
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 104/352 (29%), Positives = 186/352 (52%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE PSS+++E A EG P SRE S F + LL V
Sbjct: 1 MAE-DSDLEKTEDPSSRRLEQAREEGQVPQSRELSTFLVTMTGAATLLLLGGWMAGRVMG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
A +R D + ++ +L + A ++P + M+ + + ++ V
Sbjct: 60 LFRDGFA-FDRRAAFDENVMLDMLERMLGGALLTLMPLFVALMVAAVAAPMVLGGLVFAP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R+ +G+ R++S++ LV K+ +K +LVG + + L + + +
Sbjct: 119 KVLGLKFDRLDPLQGLGRMFSLHGLVEMFKAILKSVLVGGVAALVLWYEFEHLFSLMVEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + T+ ++I+L + L +D+ + Q++ KL+M+K+E+K E K+ G+P
Sbjct: 179 LETGMADFSATIVFATLLIVLSLGLLAAIDVPFQLWQYHKKLRMTKEEVKRESKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R +++ R R +MM +A +++TNPTH+++AL+Y + APV+VAKG+ +A
Sbjct: 239 MIKGRIRAMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAAKMGAPVVVAKGRGELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA E +P+ E P LAR+L+K + AIP Y AVA+++ +Y
Sbjct: 299 LKIREIAKESEVPLLEAPPLARALYKHCELEQAIPAALYTAVAEVMAYVYQL 350
>gi|308273532|emb|CBX30134.1| Flagellar biosynthetic protein flhB [uncultured Desulfobacterium
sp.]
Length = 356
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 191/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ KK ED +G S+E S + + L + + S + V
Sbjct: 1 MAEEASG-EKTEKPTPKKREDIRKKGEVAKSKELSSVVVLFSGLFAMGIYGSFMLSKVQE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL++ T L I ++ HL +S ++ P L + S + Q +++
Sbjct: 60 ITKSLLSNPTITDL-TIHGVMEFSRHLIISFVVILAPLLAAVFAGAVLSNIAQVGFMVSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F +++ +G+KR+ S+ +++ KS VK+I+VG +++T +
Sbjct: 119 ELIKPKFSKLNPFKGLKRLVSMQSVMELFKSMVKLIIVGATAYLTITHEMDNVSMLGELE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
SI ++ F T + + + + L V+D + ++ ++KMSKQEIKDE K++ G+P
Sbjct: 179 LVSIFHYIFATFYNIFLKCSIAMLVLVVIDYAYQRWEFEKRIKMSKQEIKDEYKKTEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R ++I R +MM+ +A +IITNPTH+A+A++Y E +AP ++AKG IA
Sbjct: 239 QVKSRIRAIQMEMARKRMMQDVPKADVIITNPTHFAVAIKYNGLEMNAPKVIAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ +A +HNIP+ E LAR+L+K V I IP Y+AVA ++ IY K
Sbjct: 299 ARIKSLAADHNIPVVENKELARNLYKLVEIGREIPADLYQAVAGVLAYIYKLK 351
>gi|197334476|ref|YP_002156665.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
gi|197315966|gb|ACH65413.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
Length = 376
Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE +SK+++ A ++G S+E + S ++ + L++F ++ S
Sbjct: 1 MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S ++ ++ D + ++ ++ ++ V L+ + + +
Sbjct: 60 VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F +++ GIKR++ + + V +KS +K+ LVG + + + +
Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K
Sbjct: 299 MKIREIAREHNIYILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351
>gi|326796452|ref|YP_004314272.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
MMB-1]
gi|326547216|gb|ADZ92436.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
MMB-1]
Length = 378
Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 189/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE SSKK++DA +GN S++ S + ++ + + F + +
Sbjct: 1 MAENEDGTEKTEDASSKKLDDARKKGNVARSKDLSSAALLIVAAMSIYFTGRILAIDLGN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
H ++ L D + ++F L ++ +I + + + GI + +
Sbjct: 61 LFHFNFV-IERQDLFDKARMIFHLYESAVGVIDSMILLMGVLAVAGIVGSIGIGGLNFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KRI S+ +LV +KS K++LVG+I T+ + +L +
Sbjct: 120 EPLTPKLSKLNPISGLKRIASVQSLVELLKSIAKVLLVGSIATVVIMLYLPELLGLPFES 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + H+ + I + L + + +DI + + + LKM+KQE+KDE KQ+ G+P
Sbjct: 180 VGNAVQHSTEVLIWAFIFVSLALVFIAAIDIPFQIWKHSNDLKMTKQEVKDEHKQAEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + ++MM +A +IITNPTH+++AL+Y T +DAPV++AKG + IA
Sbjct: 240 QVKGRIRQMQQQMAMNRMMSDVPKADVIITNPTHFSVALKYDTTSSDAPVVLAKGPDFIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A + IP+ + P L R+++K + +P +K VAQL+ ++ K
Sbjct: 300 MKIREVANFYEIPVIQSPDLTRAIYKHTEVGEQVPEGLFKVVAQLLAYVFQLK 352
>gi|74055047|gb|AAZ95852.1| FlhB [Aeromonas hydrophila]
Length = 376
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 2/351 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D +TE P+ K+++ A +G S+E S +LA + LL ++ L
Sbjct: 2 DDTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKILT 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ + + + D + + ++ L + +L + + + +
Sbjct: 62 IGF-TLDRDQAFDPNAMGAMVPALLRELLHPLGLLFMLVAIAAFIGNTLMGGMNFSSEAM 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P + ++S GIKR++ + +LV +KS K++ + L+ + +L+
Sbjct: 121 LPKWSKLSPLNGIKRMFGVQSLVELIKSIAKVVFITLFAWWMLSSQFNHLLNLSLEGYPG 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P +K
Sbjct: 181 GIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKK 302
R + + +MM +A ++ITNPTHY++AL+Y AP +VAKG + IA K
Sbjct: 241 GRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGAAPKVVAKGTDEIAMK 300
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+IA E+ IPI P L R++F I IP + AVAQ++ +Y K
Sbjct: 301 IREIAREYEIPIMPSPGLTRAIFHSTEIGHEIPEGLFAAVAQVLAYVYQLK 351
>gi|152997434|ref|YP_001342269.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
gi|150838358|gb|ABR72334.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
Length = 378
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE+ SSKK++DA N+GN P S++ S ++ + + + + +
Sbjct: 1 MAENEDGSEKTESASSKKLQDARNKGNLPRSKDLSSALLLIVAAATIYGTGTLLVRDL-A 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D+S +VF L ++ ++ + + + GI + +
Sbjct: 60 VLFDFNFLVERADVFDLSRMVFHLYESVVAMMDSMVLLMAVLAVAGIVGSIALGGLNFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++S G+KR++S+ +LV KS K+ LVG + + + L +
Sbjct: 120 EPLTPKLSKMSPIAGLKRMFSVQSLVELFKSIAKVTLVGIVSVLVVNYFLPETLGLTFQS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H V + + L +A + +D+ + KLKM+KQE+KDE KQ G+P
Sbjct: 180 IELAIAHGIDIVIWSFVFVTLALALIAAIDVPFQVWSHKEKLKMTKQEVKDEYKQQEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ R + + R ++MM A +IITNPTH+++AL+Y Q APVL+AKG + IA
Sbjct: 240 LVRGRIRQMQRQAAMNRMMSDVPSADVIITNPTHFSVALKYDQAGGAAPVLLAKGGDFIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ ++IP+ + P+LAR+++ I IP +K VAQL+ +Y +
Sbjct: 300 LKIREVGNHYDIPVIQSPALARAIYHHTEIGDEIPQGLFKVVAQLLAYVYQLR 352
>gi|54308128|ref|YP_129148.1| flagellar biosynthesis protein FlhB [Photobacterium profundum SS9]
gi|46912554|emb|CAG19346.1| putative flagellar biosynthetic protein FlhB [Photobacterium
profundum SS9]
Length = 376
Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D +TE + +K+E A +G S+E + + ++ + L+++ ++
Sbjct: 1 MSDSD-GQERTEDATPRKLEQAREKGQVARSKELASVAVLVMGAVSLIWYGEGLGKALAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S ++ ++ D+S + ++ S + L++ + + ++
Sbjct: 60 IMTQMF-SLSREEIYDLSRLFSIMLTAIWSVVFPLGLVLVVLFLAALIGAAGLGGVSFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + + V +KS +K++LV + + + L
Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVAGVAAYLMYSSLNDFLLLSLEI 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++HA + + +++I + + +D+ + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +II NP H+++ALRY + AP+++AKG + A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIIINPEHFSVALRYDPKLDSAPIVIAKGVDHTA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ K
Sbjct: 299 LKIREIANKHNIDIVSAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351
>gi|254258153|ref|ZP_04949207.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1710a]
gi|254216842|gb|EET06226.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1710a]
Length = 401
Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D + ++ LSL + P L L + + + + +++
Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351
>gi|238919250|ref|YP_002932765.1| flagellar biosynthetic protein FlhB, [Edwardsiella ictaluri 93-146]
gi|238868819|gb|ACR68530.1| flagellar biosynthetic protein FlhB, putative [Edwardsiella
ictaluri 93-146]
Length = 388
Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE P+ +IE A +G P SRE + + A L +L +S+
Sbjct: 1 MSEE-SDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLAAGLAIMLLGGEYLAHSLAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + QR L + ++ L L A ++P L M+ G + ++ + +
Sbjct: 60 MIAQGL-NFDQRLLSNDKQMLIQLGMLLQQAVAALMPVLFGLMLVGWCAPMLIGGFLFSP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +K R++ G KR++S L +K +K LVG + L + ML ++
Sbjct: 119 SSIKCDLNRLNPLSGFKRMFSSQVLAELLKGILKAALVGWVCGWFLLHYWSRMLRLVTEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A V ++++L + + D+ + SKL+M+KQEIKDE K+ G+P
Sbjct: 179 TLDAMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +I+TNPTHYA+AL+Y + + AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPGADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++ + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K
Sbjct: 299 QRIKALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 351
>gi|323491458|ref|ZP_08096642.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
gi|323314327|gb|EGA67407.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
Length = 376
Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ +
Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGSVALMWFGEGLARALFT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + + S ++ L+ + + ++
Sbjct: 60 AMGRLF-SLSREEIFDQVKLFDIALGSLSSLLLPLLLILVTLFIAALIGAAGVGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P + +++ G+KR+ + + V +KS +K+ LV + + +
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDSDRAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREHDIYVVPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351
>gi|77457779|ref|YP_347284.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf0-1]
gi|77381782|gb|ABA73295.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens Pf0-1]
Length = 379
Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL F +
Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTLAIMLAGSAALLIFGGMLAQELMD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ + D + L L A + P ++ ++ + +
Sbjct: 61 LMRQNF-TLSREVIMDERSMATFLMSSGLQALLAIQPIMITLLLAAFLGPIALGGWLFAA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S+ +V +K+ K ++ + + L + +L
Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSMKAVVELLKALAKFLITLGVALVVLNSDIDDLLRIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + +D+ + KLKM+KQE++DE K G P
Sbjct: 180 LDRAIIHSLQLVGWSSLWLACGLIIIAAVDVPVQIWESIKKLKMTKQEVRDEHKDQEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A A ++ITNPTHYA+AL+Y + AP+L+AKG + +A
Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPDADVVITNPTHYAVALKYDAEKGGAPMLLAKGSDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +N+ + E P+LARS++ + IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAVANNVMLLESPALARSIYYSTELEEEIPGGLYLAVAQVLAYVYQIR 352
>gi|269961633|ref|ZP_06175995.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
gi|269833674|gb|EEZ87771.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
Length = 376
Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S
Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ D + + + + L+ + + +
Sbjct: 60 IMSRLFD-LKRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + + + ++
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + LDI + Q +LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVALDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351
>gi|209695727|ref|YP_002263657.1| flagellar biosynthesis protein FlhB [Aliivibrio salmonicida
LFI1238]
gi|208009680|emb|CAQ79979.1| polar flagellar assembly protein FlhB [Aliivibrio salmonicida
LFI1238]
Length = 376
Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D +TE +SK+++ A ++G S+E + S ++ I L++F ++ S
Sbjct: 1 MADSD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAISLMWFGDEVGKALLS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S ++ ++ D + ++ ++ ++ V+ LL+ + + +
Sbjct: 60 IMSRFF-SISREEIFDTNKLLEIVGGALVALVFPVLKILLMLFVAALIGAAGLGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LVG + ++ +
Sbjct: 119 EAAMPKPSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGTAFYLINKSKADLFQLSLDT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++H+ + +++I + + +DI + Q ++LKM+KQEIKDE K++ G P
Sbjct: 179 YPSNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +I+TNP HY++ALRY QT++ AP++VAKG + IA
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVIVTNPEHYSVALRYDQTKDSAPIVVAKGVDHIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K
Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTEVEQQIPDGLFAAVAQILAYIFQMK 351
>gi|76581465|gb|ABA50940.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1710b]
Length = 470
Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 72 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 131
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL + P L L + + + + +++
Sbjct: 132 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 190
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 191 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 250
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K
Sbjct: 251 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 310
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 311 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 370
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 371 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 420
>gi|88813214|ref|ZP_01128454.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
gi|88789536|gb|EAR20663.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
Length = 385
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 103/354 (29%), Positives = 186/354 (52%), Gaps = 2/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E + KTEAP++K+ +A +G P SRE + ++L+ LL F + S+
Sbjct: 1 MAEEHSNGEEKTEAPTAKRRHEAKEQGQVPRSRELTTLLAMLSAAGGLLIFGNYMTDSLA 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L + + D + LL + V P L+ ++ + + + +
Sbjct: 61 DALRQGL-HVGRDAIFDPQAPIRLLREMIAQGLWAVGPLALVLLLVALVAPVALGGWTFS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P ++ +G+KR++ ++ LV KS K++LVG + T +L ++ +
Sbjct: 120 AKALAPKLSKLDPVKGLKRLFGVHGLVELGKSLAKVMLVGAVGTYALWQSLDDFQALAAE 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
L HA +M+ + + ++D+ + KL+M+KQE+KDE+KQ+ G
Sbjct: 180 ALFPALQHAARIFNTTFLMLATALILIALVDVPFQLWDHTRKLRMTKQELKDELKQTEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K+R + + + + +MME +A +++TNPTH+A+ALRY AP L+AKG +LI
Sbjct: 240 PEVKSRIRQLQQQAAQGRMMEQVPKADVVVTNPTHFAVALRYDPLHMRAPRLMAKGTDLI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+++R+IA ++ +P+FE P LAR+L ++ +P Y AVAQ++ IY +
Sbjct: 300 AQRIRRIAEDNGVPLFEAPPLARALHYTTELDQEVPAGLYLAVAQVLAYIYQLR 353
>gi|90406806|ref|ZP_01214998.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
gi|90312043|gb|EAS40136.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
Length = 379
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ ++E + ++I + +G S+E + S +++ I ++ F Y ++
Sbjct: 1 MAENENGTERSEEATPERIRKSKEKGQVARSKELATASVLISAAIAMMTFGGRLAYELSI 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + L +I L+ + + L + + I + + +
Sbjct: 61 MMKRSF-TFERSVLFSPEYIWLHLSTSFYGLAWPMFIILFMLFVISILGSSLLGGMLFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P + R+S + G+KR+ + V +KS +K+++V L + +L ++
Sbjct: 120 KALMPKWNRLSPKAGLKRMLGMQAWVELLKSILKVLVVVGAAWWILGATFEHILHLSVSS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+Y A + + +M+ + + +D+ + ++ +LKM+KQEIKDE + S G P
Sbjct: 180 LPGSVYEALDMLLWMFLMLCCSLLIIVAIDVPYQIYKHKEELKMTKQEIKDEYRNSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + KMME A +I+TNPTHY++AL+Y Q AP +VAKG + +A
Sbjct: 240 EVKQRIRQLQYEASQRKMMEDVPDADVIVTNPTHYSVALKYEQNGERAPYVVAKGVDFMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A ++ IP+ E P L R+++ IN +P + A+AQ++ IY +
Sbjct: 300 LKIREVARDNEIPVMESPPLCRAIYHTTEINEEVPEELFIAIAQILAYIYQLE 352
>gi|297538882|ref|YP_003674651.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
gi|297258229|gb|ADI30074.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
Length = 394
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 97/354 (27%), Positives = 182/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE SSK++E+A EG+ P SRE + + + + +L ++ +
Sbjct: 1 MAE-DSDLEKTEQASSKRLEEARKEGDVPRSRELATVTVLFTAGLTILIMSEHLNQALKT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + + ++ S P L+ + I + ++ + +
Sbjct: 60 TMSAGL-QFDRTAAFEPTVLLMRTADSISSLLTAFAPLALILVAVAIAAPVLVGGWIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R++ +G+ I S N+LV +KS K++LVG + + ++ + +L +
Sbjct: 119 KAFVPQFSRLNPIKGLTNIISKNSLVELVKSIAKVMLVGIVAYVVISHDMEPILTLSTLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + + + I+ + + +D+ + + + +KLKM+K+E++ E K+S GNP
Sbjct: 179 LKSSIAQVGSLMLTGFLTIVSTLVFIAAIDVPYQLYHYANKLKMTKEEVRQESKESDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R + +MM A ++ITNPTHYA+A++Y APV+VAKG + +A
Sbjct: 239 EIKAKIRQQQREMAKRRMMSEIPNADVVITNPTHYAVAIKYQDEGMRAPVVVAKGADEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
K+R++A EH + I E P LAR+L+ + + IP Y AVA+++ ++ +I
Sbjct: 299 LKIREVAGEHKVLIMESPKLARALYAHTELGNEIPEALYSAVAEILAYVFQMRI 352
>gi|88858095|ref|ZP_01132737.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
gi|88819712|gb|EAR29525.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
Length = 376
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 169/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+SKK+EDA +G S+E ++ I L+ + +
Sbjct: 1 MAEG-SDQEKTEEPTSKKLEDARKKGQIARSKETGTVVVLIMSAISLIIYGPEIGMGLKR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ LL + + D + + + ++ + +L+ ++ +
Sbjct: 60 VMARLLD-LNRTEAFDTTKMFAVWGDIAKELWFGMTMFVLVILVAAFIGNTFLGGFNFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++S +G+ R++ + K +K +LV + + ++ +L
Sbjct: 119 SAAAPQANKLSPAKGLVRMFGPQAAIELFKGLLKFLLVAVTAVLLIKFYFYEILHLSLET 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + HA + + + + + + V+D + +LKM+ QE+KDE K S G+P
Sbjct: 179 APSNIQHALTMLAWMFLGLSCTLILVAVVDAPFQLWNHNKQLKMTLQEVKDEYKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + IA
Sbjct: 239 QIKARIRRTQREMSQRRMMQDVPDADVIVTNPTHYSVALKYDTDRAGAPIVLAKGIDEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++RKIA EH++PI E P L RSLF I IP + AVAQ++ +Y K
Sbjct: 299 LQIRKIAKEHDVPILESPMLTRSLFHTTDIGQQIPDQLFIAVAQVLAYVYQLK 351
>gi|85859183|ref|YP_461385.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
SB]
gi|85722274|gb|ABC77217.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
SB]
Length = 354
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 188/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ +TE + K+ E+A +G SR+ + + + ACL+Y F + ++ +
Sbjct: 1 MAESNKDQERTEEATPKRREEAREQGQVAKSRDLASVAILSACLLYFYFGANSFLHQLMD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +S + +I LL L+ P LL+ + + S ++Q ++
Sbjct: 61 LMKSSFSSLDSSLVTT-ENIQSLLFSAFYKTITLMTPFLLVVCIAALSSNILQVGFKIST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G R++S+ +L+ F+KS KI + G + +++ +L ++
Sbjct: 120 KAIAPKLSKIDPAKGFARLFSLQSLIEFIKSIFKISIAGFVAYLTVKSELVDILPLADSS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
IL + T ++L+ + L ++D + ++ LKMS+QEIKDE KQ+ G+P
Sbjct: 180 VWEILVYITGTSFRILLTTCWVLIILALMDYLYQRWEYERNLKMSRQEIKDENKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K R + + R + +MM +A +IITNPTH A+AL+Y Q AP ++AKG +A
Sbjct: 240 IVKARIRRLQREMAQRRMMANVPKADVIITNPTHLAVALQYDQDSMIAPKVIAKGAGYLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA E +P+ E LA+ L+K V ++ IP YKAVA+++ IY K
Sbjct: 300 EKIKEIARESRVPLVENKPLAQVLYKMVEVSGTIPDSLYKAVAEILAYIYSIK 352
>gi|296133030|ref|YP_003640277.1| flagellar biosynthetic protein FlhB [Thermincola sp. JR]
gi|296031608|gb|ADG82376.1| flagellar biosynthetic protein FlhB [Thermincola potens JR]
Length = 368
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE ++KK + A EG S E + +LA I + FF + ++ +
Sbjct: 19 QEKTEKATAKKRQKARQEGQVLKSMEFNSAVVLLATFISIKLFFPYMLEQLSGFFREIYR 78
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + L ++ S + V+P + ++ G+ + L+Q + +KP+
Sbjct: 79 MWGSQDFVLNARTSHQLYFSTIKVSFMTVLPIAGIAVVSGVAANLLQSGFIFTTKPLKPN 138
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ GIKR++ + +LV +KS VK+ +VG I + + N +
Sbjct: 139 ISALNPINGIKRMFGVRSLVELVKSLVKVAIVGYIAYTGYKSEFNKFPQLLDMNIRASSL 198
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + I + + + D + + ++ LKM+KQE+K+E+KQ+ G+P +K
Sbjct: 199 FIGRLILNMAFKIAVCLLIFSGFDYWYQWWEYERSLKMTKQEVKEELKQTEGDPKVKAAI 258
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + +MM+A +A ++ITNPTHYA+AL+Y AP +VAKGQ+ +A++++++
Sbjct: 259 RRKQQQMSVARMMQAVPKADVVITNPTHYAVALKYDADTMSAPEVVAKGQDYLAQRIKQV 318
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH + + E LA++L+ V I +IP Y+AVA+++ +Y K
Sbjct: 319 AKEHGVVLVENKPLAQALYNAVEIGESIPAELYQAVAEVLAFVYKLK 365
>gi|261344152|ref|ZP_05971796.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
4541]
gi|282567746|gb|EFB73281.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
4541]
Length = 383
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE P+ K + A ++G S+E S +LA + L +
Sbjct: 1 MSDE-SDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L++ ++ L + A ++P + + GI + + + N
Sbjct: 60 IMRQGFI-FDGHYLQNTKLMLNYLGSVVSEALFALLPVIGGLALVGISASSLVGGLLFNS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K++ +G+KRI+S+N L K+ +K + VG I L +++ ++L +
Sbjct: 119 KLIKFDPKKLDPIKGLKRIFSMNALSELFKAILKSLFVGLGTWIFLWQSWPSLLHLVMEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P
Sbjct: 179 PVTALGNALEKVIFAGYLIVFMLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG +IA
Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++I E+ I E P LAR+L++ I +IP Y AVA+++ +Y +
Sbjct: 299 QRIKEIGEENRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351
>gi|192360845|ref|YP_001982207.1| flagellar biosynthesis protein FlhB [Cellvibrio japonicus Ueda107]
gi|190687010|gb|ACE84688.1| flagellar biosynthetic protein FlhB [Cellvibrio japonicus Ueda107]
Length = 379
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 2/354 (0%)
Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E +D+ KTE PS++++E A EG P SR+ + + +L I L F +
Sbjct: 1 MAEGDDSSQEKTEEPSARRLEKAREEGQIPRSRDLTTTAVLLLAAIGLWVFAEFMGGKLL 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
++ + D + ++ L + P ++L ++ I + +++
Sbjct: 61 GITRENFI-ISRTDIFDTNAMISHLVRAIYQGMLSMAPLMVLLLIASIVGPIALGGWLMS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P R+ G+KRI+S+ +L+ K+ +K+ ++ L M
Sbjct: 120 SKAMMPKLSRMDPIAGLKRIFSLKSLIELFKALLKVSIILLTTIWLLFLYAQDMFRISDE 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + H+ I + + +DI ++ KLKMS+Q++KDE K + G
Sbjct: 180 AVGNAIVHSLEISIYATIALAATTIVIAAVDIPLQLYEHNKKLKMSRQDLKDEAKDTDGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R + + R + +MM A ++ITNPTH+A+AL+Y D P+++AKG + I
Sbjct: 240 PEVKGRIRQLQREMAQRRMMANVPMADVVITNPTHFAVALKYDPETMDTPIMLAKGGDNI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA HNI E P LAR+++ I+ AIP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIAKAHNIETIESPPLARAIYYTTEIDQAIPSGLYLAVAQVLAYVFQLR 353
>gi|167838295|ref|ZP_02465154.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
MSMB43]
Length = 401
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + D + ++ LSL + P L L + + + + +++
Sbjct: 60 MMRAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMALGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ G+ RI+SI + S K ++VG I I++ + +L +
Sbjct: 119 KTFELKFDRLNPVTGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LDAALAGALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPT +A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTRFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 ARIRELAAEHRVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351
>gi|84388124|ref|ZP_00991020.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
gi|84377191|gb|EAP94061.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
Length = 376
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + K+++ A +G S+E + S ++ I L++F ++
Sbjct: 1 MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAISLMWFGESMAKALFE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + ++ + ++ + L+ + + ++
Sbjct: 60 AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGVNFSM 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ GIKR++ + + V +KS +K+ LV + + + ++
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MKIREIARENDIYIIPAPPLARALYHTTELEQQIPDGLFAAVAQVLAYVFQLK 351
>gi|59712446|ref|YP_205222.1| flagellar biosynthesis protein FlhB [Vibrio fischeri ES114]
gi|59480547|gb|AAW86334.1| flagellar export pore protein FlhB [Vibrio fischeri ES114]
Length = 376
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE +SK+++ A ++G S+E + S ++ + L++F ++ S
Sbjct: 1 MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S ++ ++ D + ++ ++ ++ V L+ + + +
Sbjct: 60 VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F +++ GIKR++ + + V +KS +K+ LVG + + + +
Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K
Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351
>gi|312962260|ref|ZP_07776752.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
gi|311283597|gb|EFQ62186.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
Length = 378
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + +
Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLLE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + L + + L H A V P L+ ++ + + +
Sbjct: 61 LMKHNF-SLPREVLLNPDSMGQYLMHSGKIALLAVQPILITLLLAALIGPVALGGWLFAA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S LV +K+ K IL+ + L+ + +L
Sbjct: 120 GSMAPKFSRMNPAAGLKRMFSAKALVELLKALAKFILILFVALSVLSSDVDDLLRIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + H+ V + + + + +D + + KL M+KQE++DE K G P
Sbjct: 180 LESAIIHSVQVVGWSALWMSAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + KMM A A ++ITNPTHYA+AL+Y + AP+L+AKG + A
Sbjct: 240 EVKQRIRQLQREMSQRKMMAAVPDADVVITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA + I + E P LARS+F ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAVANEILLLESPELARSIFYSTDLDHEIPAGLYLAVAQVLAYVYQIR 352
>gi|183598609|ref|ZP_02960102.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
gi|188020787|gb|EDU58827.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
Length = 383
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE P+ K + A ++G S+E S +LA + L +
Sbjct: 1 MSDE-SDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLADELRQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+++ +V + A ++P + + GI + + + N
Sbjct: 60 IFRQGFI-FDGHYIQNTLLMVSYFGRMVGEALFALLPVIGGLALVGISASSLVGGLLFNS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+++ G+KRI+S+N L K+ +K + VG I L +N+ ++L ++ +
Sbjct: 119 KLIKFDLKKLNPISGLKRIFSMNALSELFKAILKSLFVGLGAAIFLWQNWSSLLHLVTES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P
Sbjct: 179 PVTALGNAMHKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R+ R++MM +A +I+TNPTHYA+AL+Y AP ++AKG +IA
Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPQADVIVTNPTHYAVALKYDDKRMGAPKVLAKGAGVIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y +
Sbjct: 299 QRIKEIGQEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351
>gi|270262410|ref|ZP_06190681.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
gi|270043094|gb|EFA16187.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
Length = 398
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 100/350 (28%), Positives = 181/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ K+EAP++ ++E A +G P SRE + ++A L + + + L
Sbjct: 18 EDSDLEKSEAPTAHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGGGMAQQLAAMLT 77
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + + + ++ L L A ++P + ++ I + ++ +L+ +
Sbjct: 78 QGL-NFDHTMVSNDKQMLRQLGMLLRQAVWALLPIMAGLVLVAITAPMLLGGLLLSGKSL 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K KR++ G+KR++S L +K +K LVG I + L ++ ML ++ P
Sbjct: 137 KFDVKRMNPLSGLKRMFSSQVLAELLKGLLKATLVGWITGLYLWHHWAEMLHLVTQQPLD 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P +K
Sbjct: 197 ALGNALRMIIFCGLLVVLGLTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++
Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDQKMSAPKVLAKGAGEIALRI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 317 RELGTEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366
>gi|323158635|gb|EFZ44649.1| flagellar biosynthetic protein FlhB [Escherichia coli E128010]
Length = 382
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 189/350 (54%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V +++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCVLLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|290474957|ref|YP_003467841.1| putative part of export apparatus for flagellar proteins
[Xenorhabdus bovienii SS-2004]
gi|289174274|emb|CBJ81064.1| putative part of export apparatus for flagellar proteins
[Xenorhabdus bovienii SS-2004]
Length = 383
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K E A +G S+E + +L + LL+ I S
Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKDGQIARSKELTS-ILMLVGGVSLLWMSGNSITHELS 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + ++ + L A ++P + ++ + + + + +
Sbjct: 59 LMVFEGFNFDHNMVSNDKQMIQQVGRLLKQAVWALLPVFVGLVLVALSAPTLMGGLIFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K ++S G+K+I+S+N L K+ +K LVG + + N+ ML+ +
Sbjct: 119 KSIKFDLAKLSPISGLKKIFSMNALAELFKAILKASLVGGGTALFIWLNWPAMLNLTAQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L A + ++L + + D+ + KL+M++QEIKDE K+ G+P
Sbjct: 179 PLMALSDAMMMLIFAGYIVLFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG LIA
Sbjct: 239 HVKARIRQQQRAAARKRMMSDVPKADVIVTNPTHYAVALQYDSKKMGAPKVLAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++I E+ IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIKEIGAENRIPLLEAPPLARALFRHAEVGGFIPATLYAAVAEVLAWVYQLK 351
>gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
NCTC 2916]
gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
NCTC 2916]
Length = 609
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAIALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|163856421|ref|YP_001630719.1| flagellar biosynthesis protein FlhB [Bordetella petrii DSM 12804]
gi|163260149|emb|CAP42450.1| flagellar biosynthesis protein FlhB [Bordetella petrii]
Length = 379
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 181/353 (51%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTEA S +++E A EG SRE F + A + L S +T
Sbjct: 1 MADE-SDLEKTEAASPRRLEKAREEGQIARSRELGTFLLLAAGVGGLWLSGSMLYRGLTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R D +V + A LV+P + M + + ++ V +
Sbjct: 60 VLRNGLG-FDARIGRDPGIMVAQAVDGAGQALLLVLPIFGVLMAVAVLASVVLGGFVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F ++SL G+KR+ S +V +K+ K +LVG + + + ML + A
Sbjct: 119 KPLQPDFAKLSLFSGLKRMVSAQTVVELLKAVAKALLVGGVAVAVIGGHRDEMLALMHAA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P
Sbjct: 179 PTEALVKALTLVALCAALIVASLGIIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + RS R +MM RA +++TNPTHYA+ALRY + + AP +VAKG L+A
Sbjct: 239 HIKARIRQQQRSMARRRMMSEVPRADVVVTNPTHYAVALRYAEGQA-APRVVAKGTGLVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A H +P+ + P LAR+L++ V + IP Y AVA+++ ++ +
Sbjct: 298 ARIRELAAGHRVPLLQAPPLARALYQHVELGQEIPAALYTAVAEVLAWVFQLR 350
>gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum B1 str. Okra]
gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1
str. Okra]
Length = 609
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|88704274|ref|ZP_01101988.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
gi|88701325|gb|EAQ98430.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
Length = 384
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E +TE P+ ++ E+A +G P SRE + S+L + L + + +
Sbjct: 1 MAEEQTGQERTEPPTERRKEEARKKGQVPRSRELNTMLSLLITGVGLWVLGGSLVDDLFA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
S + D + H++ + + P + ++ + L+ ++
Sbjct: 61 ITISGF-SVDRAAAFDAEQLPVRFMHMASATLLALAPLFAVTVVAALAGPLLMGGWSFSV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +++ +G+ R++S+ L K+ +K +L+ + + + +L +
Sbjct: 120 QAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMAVAYLMIMAFERDILTLSALT 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + LI++ + + + D+ + + +L+M++QE++DE+K++ G P
Sbjct: 180 PGEASSRVVSMLVIALIVLSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM+ A ++ITNPTH ++AL Y AP +VAKG++L+A
Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHVSIALSY-ADGAGAPRVVAKGRDLLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA EH++P++E P LAR+L+ + IP Y AVA+++ ++ +
Sbjct: 299 LQIRTIATEHDVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351
>gi|315127306|ref|YP_004069309.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
gi|315015820|gb|ADT69158.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
Length = 376
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ KK++DA +G S+E ++ I LL + +
Sbjct: 1 MAE-DSGQEKTEEPTPKKVDDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L S + + D + + + ++ + +L+ ++ + +
Sbjct: 60 IMGRML-SLNRNETYDTTKMFAVWGEVADVLLFPMSMFVLIIVLAAFIGNTMLGGFNFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S +G R++ + +KS +K LV + + +L +
Sbjct: 119 QAAAPKASKMSPMKGFTRMFGPQAAIELLKSLLKFGLVAAFAIFLINTFFDEILHLSIES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA + + + + + + +D + + +LKM+ QE+KDE K S G+P
Sbjct: 179 APGNIVHALEILAWMFLGMSCTLIIIAAIDAPFQSYSHNKQLKMTMQEVKDEYKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++RKIA + +PI E P+L R+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MQIRKIALGNEVPIVESPTLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351
>gi|323705428|ref|ZP_08117003.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535330|gb|EGB25106.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 357
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ +DA +G SRE + +A + + F I + + + L
Sbjct: 8 GEKTEPATPKRRQDARKKGQVFQSREVTSALVTIAGFLVIYFTVQNSIAEIMNLIKFLFL 67
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + I+ I L + +L++P + + + S Q V L +
Sbjct: 68 NYGGASDNVFTINGIYKLFEMVFSVFIKLILPTIATVFIIALISTYAQVGFVFTLETLNF 127
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R++ +G+KR++S +L+ +KS +KI ++ ++ L Y + + + ++
Sbjct: 128 KLERLNPLDGLKRMFSKRSLLELVKSIIKISILAYVMYSFLIGQYKGIPQLLDMSVQDLI 187
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ +L+ I L + L +D + + ++ S L+MSK++IK+E K++ GNP IK+
Sbjct: 188 KYNMNIFAGILLRISLVLVVLGAIDYVYQWREYESNLRMSKEDIKEEFKETEGNPQIKSE 247
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV+VAKGQ+ IA+K+++
Sbjct: 248 IRKKQRQISMRRMMQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQKIKE 307
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +++I I E LA+SL+K I +IPP YKAVA+++ +Y +
Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTEIGDSIPPELYKAVAEVLAYVYSLR 355
>gi|82702438|ref|YP_412004.1| flagellar biosynthesis protein FlhB [Nitrosospira multiformis ATCC
25196]
gi|82410503|gb|ABB74612.1| flagellar biosynthetic protein FlhB [Nitrosospira multiformis ATCC
25196]
Length = 392
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +TE S +++E + EG AP S E S F+ ++A L +
Sbjct: 1 MSEE-SDQERTEPASPRRLEKSREEGQAPRSTELSTFALLIAAGTGLWLMGGHLSSQLAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + + + L S A P L+L ++ + + ++ + +
Sbjct: 60 LMKEGM-HIPRETGFEPARLAERLFDQSFHALITFAPFLILMILVALVAPMLLSGWLFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FKR++ G+ R++S+++L+ K+ +K L+G ++ ++L I+
Sbjct: 119 KSLNPDFKRINPLSGLSRMFSLHSLLELAKALLKAALIGGAGVWTIWHYKESVLSLIARP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L H V I + + +D+ + Y KL+M+K+E++ E K++ GNP
Sbjct: 179 LVPGLTHMGELVALSFFSIAGTMILIATVDVPFKLWDHYRKLRMTKEEVRQENKETEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R ++ R R +MM RA +IITNPTHY++ALRY + AP +VAKG +L+A
Sbjct: 239 QIKGRIRAQQREMARKRMMTEIPRADVIITNPTHYSVALRYEDGKMRAPRVVAKGMHLLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I ++H +P+ E P LAR+L++ + IP Y VA+++ +Y +
Sbjct: 299 LKIREIGHQHKVPVLEAPPLARALYQHTELGDEIPQTLYNVVAEVLAYVYQLR 351
>gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
Length = 413
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 66 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 125
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 126 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 184
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 185 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 244
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 245 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 304
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 305 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 363
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 364 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 410
>gi|299534768|ref|ZP_07048098.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
gi|298729856|gb|EFI70401.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
Length = 362
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 106/346 (30%), Positives = 183/346 (52%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +DA +G S++ S +L I+L FF + +
Sbjct: 14 GEKTEKATPKKRQDARKKGQVVKSQDISSAIVMLMVFIFLFFFAGSLRDELLAFFRQTFI 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + I ++ L T + + +++P + + + + +Q + L +K
Sbjct: 74 HNIRIESLTIDSVMHLFTETLIQMAFIIVPIMAIAFVGALAGNFMQFGFLFTLEPMKFDL 133
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K++ +G+K+I+S+ +V +KS +KI +G++ TI + N +L +P L
Sbjct: 134 KKMDPIKGLKKIFSVKAIVELIKSVLKIGFIGSVTTIIIWSNLPEVLALSFKSPWMTLIT 193
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V + I L + ++VLD + H++ LKMSKQ+IKDE K S G+P+IK++ K
Sbjct: 194 VGKLVGIMGIAASLVLLCVSVLDWMYQKHEYEKNLKMSKQDIKDEYKNSEGDPLIKSKIK 253
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ IA
Sbjct: 254 QRQREMAMRRMMSEVPSADVVITNPTHYAIALKYNEDSMDAPRVIAKGTDFIAQKIKLIA 313
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K
Sbjct: 314 KEHDVIMVENRPLARAMYDQVEIGDQVPEEFFKAVAEILAYVYRIK 359
>gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. ATCC 3502]
gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A str. ATCC 19397]
gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A str. Hall]
gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
3502]
gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. ATCC 19397]
gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. Hall]
Length = 609
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|226939714|ref|YP_002794787.1| FlhB1 [Laribacter hongkongensis HLHK9]
gi|226714640|gb|ACO73778.1| FlhB1 [Laribacter hongkongensis HLHK9]
Length = 389
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 172/353 (48%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TE + ++ E A EG P SRE + F+ + + L+ + +
Sbjct: 1 MAE-DSDLERTEEATPRRREQAREEGQVPRSRELATFTVTMTGVAMLVAYGGVLYQQLKE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + T+ L+ L ++P L + + + + + L+
Sbjct: 60 LFARTL-TFTRATLDAEDAAQLALRGGLTDGLVSILPILGVLFVLALVTPALIGGWNLSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V+P F +++ GIKRI+S+ + K+ +K +L+G + T + ++ +
Sbjct: 119 KAVEPKFSKINPLSGIKRIFSVQGAIEGAKAILKSLLIGGVATWVIWNERAELVSLTRLS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A L+++ + L ++D+ + Q+ L+M+K+++K E+K+S G+P
Sbjct: 179 LDQALARAVDLTLHTLLIVAGAMVLLVLIDVPFQLWQYSKNLRMTKEDVKKEMKESEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R R +MM A+++ITNPTHYA+ALRY AP ++AKG +A
Sbjct: 239 EVKGRIRQLQREAARRRMMSDVPNASVVITNPTHYAVALRYEDG-MAAPKVIAKGSMKVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ ++A E+ + I P AR+L+ I IP Y A AQ++ ++ +
Sbjct: 298 ERIIELARENRVTILRAPPFARALYFNSEIGDDIPAALYSAAAQVLAYVFQLR 350
>gi|238025868|ref|YP_002910099.1| flagellar biosynthesis protein FlhB [Burkholderia glumae BGR1]
gi|124695889|gb|ABN14283.1| FlhB [Burkholderia glumae BGR1]
gi|237875062|gb|ACR27395.1| FlhB [Burkholderia glumae BGR1]
Length = 408
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE + ++ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLEKTEDATPRRREKAREEGQVARSREFASFALLAAGFYGAWLLSGPIGEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + D ++ + + P L L + + + + +L+
Sbjct: 60 MLRGSL-TFDRASAFDTHQMLTGAGRAGMEGLSAIAPVLALTGLAALAAPIALGGWLLST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R+ G+ RI+S ++ + K ++VG I I++ ++ ML ++
Sbjct: 119 KAIGFKFDRLDPISGLGRIFSPQGVIQLGMALAKTVIVGGIGGIAIWRSHDEMLGLLNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L V M + + + +D+ + Q+ KL+M+K+E+K E ++S G+P
Sbjct: 179 LHEALAGTLHLVAVCCGMTVAGMLVVAGMDVPYQIWQYNKKLRMTKEEVKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +++TNPTH+A+ALRY E AP ++AKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVIAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELAEEHRVPILEAPPLARALYHNVDLEREIPGSLYSAVAEVLAWVYQLK 351
>gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
str. 657]
gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
str. 657]
Length = 609
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|161723151|ref|YP_443664.2| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
E264]
Length = 405
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ +TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL ++P L L + + + + +++
Sbjct: 67 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355
>gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402
065]
Length = 609
Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGTNELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|253998503|ref|YP_003050566.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
gi|253985182|gb|ACT50039.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
Length = 384
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE + K++E A EGN P SRE + +LA + + S ++
Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D + ++ ++ S P L + I + + ++
Sbjct: 60 TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R++ G+ + S N LV +K+ K ILVG++ + + + T+L
Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ + + K I+ + + +D+ + + + LKM+K+E+K E K+S GNP
Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R R +MM +A ++ITNPTHYA+A++Y + APV++AKG + +A
Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH I E P LAR+L+ + IP Y AVA++I ++ +
Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351
>gi|167582700|ref|ZP_02375574.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
TXDOH]
Length = 405
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ +TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL ++P L L + + + + +++
Sbjct: 67 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355
>gi|114570480|ref|YP_757160.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
gi|114340942|gb|ABI66222.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
Length = 363
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 96/352 (27%), Positives = 183/352 (51%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ ++++DA +G+ S+E + + A L L F F ++
Sbjct: 1 MAEGEDDSQKTEEPTQRRLDDARKKGDVAKSQEIPGWFVLAAGLALLSFIFPMMSRALAG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L V + + ++ L+ ++ +V + L + G + +Q+ +
Sbjct: 61 NLEVFFEQPHDFAI-NPGAMMGLMQAVAWQVVAIVGLPIGLLAVAGFAGHYVQQGMLFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ EG KR + L NF+K K+ LV + + + + +
Sbjct: 120 EKIQPKLSKLNPIEGFKRNFGPQGLANFLKGVGKMALVAVAAFLVIYPKREILAGLPALD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S+L ++L+ L A + LD + + + +MS++EIKDE+KQS G+P
Sbjct: 180 IGSLLSLVRQGAIELLLAALTVYAVIAGLDYIFQRQSFMKRNRMSRREIKDEMKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ + + + + R + +MM AT+++TNPTHYA+AL Y+Q E APV VAKG + +A
Sbjct: 240 LVRAKLRQLRQERSQRRMMTKVPDATVVVTNPTHYAIALHYVQGETPAPVCVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R++A EH++PI E+P LAR+L ++ IP ++AVA+++ +
Sbjct: 300 LRIRELAEEHSVPIVEDPPLARALHATADLDEEIPTEHFQAVAKVVGYVLSL 351
>gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A3 str. Loch Maree]
gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3
str. Loch Maree]
Length = 609
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IP+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEIPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|53720905|ref|YP_109891.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
K96243]
gi|53724312|ref|YP_104358.1| flagellar biosynthesis protein FlhB [Burkholderia mallei ATCC
23344]
gi|167817864|ref|ZP_02449544.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 91]
gi|167847750|ref|ZP_02473258.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
B7210]
gi|52211319|emb|CAH37308.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
K96243]
gi|52427735|gb|AAU48328.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
23344]
Length = 405
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL + P L L + + + + +++
Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355
>gi|333004498|gb|EGK24027.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-272]
gi|333017872|gb|EGK37178.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-227]
Length = 397
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 186/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L ++D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+ NP HY++AL+Y + + AP +VAKG L+ ++
Sbjct: 241 GRICQMQRAAARRRMMADVPKADVIVNNPNHYSVALQYDENKMSAPKVVAKGAGLVVLRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 301 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350
>gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
str. Kyoto]
gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
str. Kyoto]
Length = 609
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|320325130|gb|EFW81199.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329389|gb|EFW85382.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 378
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 188/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ L D S++ L L A +++P L+ ++ + ++ +
Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ +
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|167721674|ref|ZP_02404910.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
DM98]
Length = 405
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL + P L L + + + + +++
Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355
>gi|30250406|ref|NP_842476.1| flagellar biosynthesis protein FlhB [Nitrosomonas europaea ATCC
19718]
gi|30181201|emb|CAD86399.1| FlhB HrpN YscU SpaS Family [Nitrosomonas europaea ATCC 19718]
Length = 376
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE S +++E A EG S+E + F+ ++A L S I +++
Sbjct: 1 MAD-DNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIGSIIIQKLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L Q + + ++ L L+L + P L ++ + + ++ + +
Sbjct: 60 VLESGLR-MEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIIALVAPMLLSGWLFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P KR++ G+KRI+S L+ +K+ K++++G + + + +LD +
Sbjct: 119 KALFPDLKRLNPVNGLKRIFSSRGLIELVKAIAKVMVIGGVAAGIIWSHKQDVLDLVGMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++I+ + + V+D+ + +L+MS+++++ E K+ G+P
Sbjct: 179 LDTSLISMSRLIGLTFMLIVGAMLLIVVIDVPFQIWNHARQLRMSREDLRKEAKEDEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R R +MM +A +++TNPTHYA+AL+Y AP +VAKG LIA
Sbjct: 239 QVKGRIRNMQRQIARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRAPKVVAKGTQLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ I+ K
Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYIFQLK 351
>gi|258621117|ref|ZP_05716151.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
gi|262170893|ref|ZP_06038571.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
gi|258586505|gb|EEW11220.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
gi|261891969|gb|EEY37955.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
Length = 376
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F + +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + ++ DI + ++ ++ ++ L+ + + +
Sbjct: 60 AMQRLF-SLDREEIFDIGKLFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGINFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|134094535|ref|YP_001099610.1| part of export apparatus for flagellar proteins [Herminiimonas
arsenicoxydans]
gi|133738438|emb|CAL61483.1| Flagellar biosynthetic protein FlhB [Herminiimonas arsenicoxydans]
Length = 390
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 170/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE S +K+E A +G+ P SRE + + +L F I + S
Sbjct: 1 MAEE-SDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGASAAFWFTGGNMIAELNS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L S + D+ ++ + P L+ ++ + S ++ + +
Sbjct: 60 MLASGL-SFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWLFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F R++ +G+ + S + V K+ K IL+G I + +L
Sbjct: 119 QALQPNFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVLALSVTP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + + I+ + + +D + Q KL MS+Q+++ E K+S GNP
Sbjct: 179 LQSGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A
Sbjct: 239 EIKAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGADEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ +
Sbjct: 299 AKIREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 351
>gi|28869179|ref|NP_791798.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967544|ref|ZP_03395692.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
tomato T1]
gi|301382881|ref|ZP_07231299.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
tomato Max13]
gi|302061091|ref|ZP_07252632.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
tomato K40]
gi|302131293|ref|ZP_07257283.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852419|gb|AAO55493.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927845|gb|EEB61392.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
tomato T1]
gi|331016989|gb|EGH97045.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 378
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 188/353 (53%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F + GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGA-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DL + ++ + D S++ L L A +++P L+ + + ++ + +
Sbjct: 60 DLMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L++ ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|114566403|ref|YP_753557.1| flagellar biosynthesis/type III secretory pathway protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337338|gb|ABI68186.1| flagellar biosynthesis/type III secretory pathway protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 369
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 100/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D KTE + ++ E+A +G S + + ++A + F + ++ S
Sbjct: 17 DDGMGEKTEKATPRRREEARKKGQVFKSTDLNSAIILIAGSVASFMAFPYMVNNLKSFTT 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ L TQ+ + +I F+L + + +++ P L + + +Q V + +
Sbjct: 77 LYLLQRTQQDFSN-DYIYFMLLEVLIIMGKMIFPIFLTTFIVALLITYLQVGFVFSGESL 135
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P +R++ EG KRI+S LV KS +K+I+ G I+ + ++Y FI +
Sbjct: 136 TPKLERLNPVEGFKRIFSKRALVELGKSLLKVIVTGYIVYSVMRKHYILFPRFIDMELIA 195
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L V ++ + + L + + D + +++ LKMSK EIK E KQ+ G+P +K
Sbjct: 196 GLQVLSSIVFEMAMKVGLVFIIIGIADYIFQWYEHEKSLKMSKYEIKQEYKQTEGDPQLK 255
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+RQ+ I R +MM +A ++ITNPTH+A+ L+Y ++ +APV+VA+G++ +A K+
Sbjct: 256 SRQRRIQRDIAMQRMMAEVPKADVVITNPTHFAVVLKYEASKMEAPVVVARGKDFMALKI 315
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++IA H + I E P LAR+L+ I +P Y+AVA+++ +Y +K
Sbjct: 316 KEIARMHGVVIVENPVLARTLYYNTEIGDLVPEELYQAVAEVLAFVYKQK 365
>gi|186477710|ref|YP_001859180.1| flagellar biosynthesis protein FlhB [Burkholderia phymatum STM815]
gi|184194169|gb|ACC72134.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
Length = 411
Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 183/350 (52%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ KTE+ + +++E A EG SRE + F+ + A + V + L
Sbjct: 12 EDSDLEKTESATPRRLEKAREEGQVARSRELATFALVAAGFLGAWGMSGMIGEHVQTMLR 71
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ + D ++ + +++P L L + + + + +L+ +
Sbjct: 72 TAF-TFNHETVFDPKRAFISAGAVTREGAYMLMPLLALLGLAALLAPMAMGGWLLSTKSL 130
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P+F+R++ G+ RI+SIN + S KI++VG I +++ +L + H
Sbjct: 131 APNFQRLNPVSGLGRIFSINGWIQLGMSLAKIVVVGLIGGLAIWHRREDILALATQPLHV 190
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L +A + M + + L +D+ + ++ KL+M+K+E+K E ++S G+P +K
Sbjct: 191 ALSNAGHLIAVCCAMTVGGMFLLAAMDVPYQLWSFHKKLRMTKEEVKREHRESEGDPHVK 250
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R +S R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 251 ARIRSQQRAMARRRMMANVPKADVVVTNPTHFAVALQYTDGEMGAPKVVAKGVNLVAARI 310
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y +
Sbjct: 311 RELAVENNVPLLEAPPLARALYHNVELNREIPGALYGAVAEVLAWVYQLR 360
>gi|302185378|ref|ZP_07262051.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
syringae 642]
Length = 378
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 183/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|254506872|ref|ZP_05119011.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
gi|219550157|gb|EED27143.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
Length = 376
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F + +
Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVALMWFGDSLARGLYT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + + S +I L+ + + ++
Sbjct: 60 VMERLF-SLSREEIFDHVKLFDIALGSLTSLILPLILILVTLFVAAVAGAAGVGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ I + V +KS +K+ LV + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGIQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 FPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNTDRAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351
>gi|307264886|ref|ZP_07546448.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920144|gb|EFN50356.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 363
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + K+ +DA +G SRE + I+A + + P + + + + LL
Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A +++P +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361
>gi|323496542|ref|ZP_08101596.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
gi|323318386|gb|EGA71343.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
Length = 376
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ +
Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVSLMWFGESLARALFT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ ++ D + L S +I L+ + + ++
Sbjct: 60 VMERLF-TLSREEIFDQVKLFDLALGSLTSLILPLILILVTLFIAAVAGAAGVGGISFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P + +++ G+KR+ + + V +KS +K+ LV + + +
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P
Sbjct: 179 FPQNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351
>gi|317492437|ref|ZP_07950866.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919776|gb|EFV41106.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 383
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 110/353 (31%), Positives = 183/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE P+S K+E A +G P SRE + + A + LL + +
Sbjct: 1 MSE-DSDLEKTEDPTSHKLEKAREKGQVPRSRELTSMLMLAAGISILLIGGEHLARQLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L Q + + ++ L +L A ++P LL M+ G + ++ N
Sbjct: 60 MISQGL-QFDQLLISNDKQMLRQLGNLLQQAVAALMPVLLGLMLVGWAAPMLIGGFFFNP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K ++SL G+KR++S L +K +K+ILV + L + ML I+ +
Sbjct: 119 GSIKFDLSKMSLLSGLKRLFSSQALAELLKGVLKVILVSWVAGWFLWHYWGQMLALIAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + A + ++I+L + + D+ + +KLKM+KQEIKDE K+ G+P
Sbjct: 179 PLDAMGDALHLIGMCGLLIVLGLVPMVAFDVFYQIWSNLNKLKMTKQEIKDEFKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA
Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++ +H IP E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 LRIKELGNQHRIPQLEAPPLARALYRHSEIGHHIPATLYAAVAEVLAWVYQLK 351
>gi|313200589|ref|YP_004039247.1| flagellar biosynthetic protein flhb [Methylovorus sp. MP688]
gi|312439905|gb|ADQ84011.1| flagellar biosynthetic protein FlhB [Methylovorus sp. MP688]
Length = 384
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE + K++E A EGN P SRE + +LA + + S ++
Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D + ++ ++ S P L + I + + ++
Sbjct: 60 TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P F R++ G+ + S N LV +K+ K ILVG++ + + + T+L
Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ + + K I+ + + +D+ + + + LKM+K+E+K E K+S GNP
Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R R +MM +A ++ITNPTHYA+A++Y + APV++AKG + +A
Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH I E P LAR+L+ + IP Y AVA++I ++ +
Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351
>gi|71736663|ref|YP_275525.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484900|ref|ZP_05638941.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289651607|ref|ZP_06482950.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487818|ref|ZP_07005858.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71557216|gb|AAZ36427.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157543|gb|EFH98623.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330889044|gb|EGH21705.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. mori
str. 301020]
gi|330986505|gb|EGH84608.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011080|gb|EGH91136.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 378
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ L D S++ L L A +++P L+ ++ + ++ +
Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L+ ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|238755333|ref|ZP_04616676.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
gi|238706469|gb|EEP98843.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
gi|253317686|gb|ACT22775.1| flagellar biosynthesis protein FlhB [Yersinia ruckeri]
Length = 383
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P++ K+E A +G P SRE + + A L L F + +
Sbjct: 1 MAE-DSDLEKTEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLSILWVFGESIGRQLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + L + + ++P + ++ I ++ +
Sbjct: 60 MIAQGL-QFNHGVIGNEKQMLRQVGMLLMQTVKALLPVFIGLVLVAISVPMLLGGIAFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
K KR++ G+KR++S L +K+ +K LVG + + L + ML I+A
Sbjct: 119 ESFKFDLKRMNPISGLKRMFSSQVLAELLKAILKATLVGWVTGMFLWHYWPDMLRLIAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + +++L + + D+ + KL+M+KQEI+DE K G+P
Sbjct: 179 PIAALGDALHLILFCGFIVVLGLTPMVGFDVFYQIMSHIKKLRMTKQEIRDEFKDQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPQADVIVTNPTHYAVALQYNENKMSAPKVLAKGAGEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLK 351
>gi|167740656|ref|ZP_02413430.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 14]
gi|167826242|ref|ZP_02457713.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 9]
gi|167896340|ref|ZP_02483742.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
7894]
gi|167904714|ref|ZP_02491919.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
13177]
gi|167912992|ref|ZP_02500083.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 112]
gi|42766716|gb|AAS45441.1| FlhB [Burkholderia pseudomallei]
Length = 405
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL + P L L + + + + +++
Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355
>gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum F str. Langeland]
gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
str. Langeland]
gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
str. 230613]
Length = 609
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + +K DA +G S+E +L ++LAC + L+ G + + L
Sbjct: 262 SEEKTEDATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L + +++ L L ++V+P L M FGI + +Q + +KP
Sbjct: 322 NNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++
Sbjct: 381 FKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++
Sbjct: 441 GLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ I
Sbjct: 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DTAPKVVAKGADYVAIKIKDI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K
Sbjct: 560 AKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606
>gi|330876032|gb|EGH10181.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 378
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMF-GTGIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ + D S++ L L A +++P L+ + + ++ + +
Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L++ ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|269138573|ref|YP_003295273.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
gi|267984233|gb|ACY84062.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
gi|304558582|gb|ADM41246.1| Flagellar biosynthesis protein FlhB [Edwardsiella tarda FL6-60]
Length = 440
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 104/350 (29%), Positives = 174/350 (49%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ KTE P+ +IE A +G P SRE + + L LL ++ +
Sbjct: 55 EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLATGLAILLLGGEYLARALAVMIA 114
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L L + ++ L L A ++P LL M+ G + ++ + + + +
Sbjct: 115 QGL-HFDHLLLSNDRQMLIQLGMLLQQAVAALMPVLLGLMLVGWCAPMLIGGFLFSPSSI 173
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K R++ G KR++S L +K +K LVG + L + ML I+
Sbjct: 174 KCDLNRLNPLSGFKRMFSSQVLAELLKGILKATLVGWVCGWFLLHYWPRMLRLITEPTLD 233
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ A V ++++L + + D+ + SKL+M+KQEIKDE K+ G+P +K
Sbjct: 234 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 293
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA+++
Sbjct: 294 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIAQRI 353
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K
Sbjct: 354 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 403
>gi|304404263|ref|ZP_07385925.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
YK9]
gi|304347241|gb|EFM13073.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
YK9]
Length = 369
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE+ + KK ++A +G S+E +L + + + L
Sbjct: 18 SQEKTESATPKKRQEAREKGQVAKSQELPGAFILLFVFMSFYMIGPYYKSRILAMFGDLF 77
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
L + +++ L T L ++ P + ++ + +Q + + +K
Sbjct: 78 EDWLTLDL-TMGNVMSLFTQLMYEMLMMLAPIFAIALLVALLGNYVQVGILFTGDPLKMK 136
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++S +G K I+++ +V F+K+ +K++++G ++ ++L + ++ + +L
Sbjct: 137 FSKLSPIQGFKNIFAMRTVVEFIKNILKLVVIGLVVFMTLKSQWGRIIQLDTLPVEYVLG 196
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
K+ I I + + L + D + +++ L+MSKQ+IKDE K++ GNP+IK R
Sbjct: 197 FTGGIALKLGIEIGVILVVLALGDYFYKKYEYEKGLRMSKQDIKDEFKKTEGNPLIKGRI 256
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTH+A+AL+Y ++ +APV++AKG + +A ++R+
Sbjct: 257 RERQRKMALQRMMQDVPKADVIITNPTHFAVALKYDASKMEAPVVLAKGMDHVALRIRET 316
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH + E LAR+L+ + I +IP ++AVA+++ +Y K
Sbjct: 317 AKEHGVITMENKPLARALYDRSEIGDSIPSDLFQAVAEVLAYVYKLK 363
>gi|261252335|ref|ZP_05944908.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
gi|260935726|gb|EEX91715.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
Length = 376
Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ I L++F ++ +
Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGSIALMWFGESLARALFT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S ++ ++ D + ++ S ++ L+ + + ++
Sbjct: 60 VMSRLF-SLSREEIFDHVKLFDIVVGSIGSLILPLLLILVTLFVAAVVGAAGVGGVSFSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + ++ +
Sbjct: 119 EAAMPKASKMNPLSGLKRMVGMQSWVELIKSILKVALVSGMAFYLISAAREDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCTLLIVAAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I + P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREVAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351
>gi|118588696|ref|ZP_01546104.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
gi|118438682|gb|EAV45315.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
Length = 359
Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 196/353 (55%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ KTE P+ K++++A ++G+ P S+E S + ++ + + F S+
Sbjct: 1 MADDSDDSEKTEDPTHKRLKEAHDKGDVPKSQEVSTWFTLAGATLMIAIFAPSTAVSLGE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L A Q + D + L S + +V LL ++ + L+Q P+L
Sbjct: 61 MMKGYLEHAHQIAV-DGYALKALWRDTGQSVALIVGIPLLALVIMAVAGNLVQHQPLLTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +VS G KR++S +LVNF K +KI +VG I+ + + + A+
Sbjct: 120 ETIKPKLSKVSPASGFKRLFSSESLVNFAKGMIKISVVGAIMVAVMWPHRDEAEVMVFAD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ IL A + ++L +L + + D + ++W++K KMS +E+K+E KQ+ G+P
Sbjct: 180 TNIILEEARILILQLLSAVLAVMTVVAGADFIYQRNKWFNKQKMSLREVKEEYKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R R +MM A +AT+++TNPTHYA+AL+Y + AP+ +AKG + IA
Sbjct: 240 QIKGKIRQLRMERSRKRMMSAVPQATVVVTNPTHYAVALKYEEG-MGAPLCLAKGTDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E +IP+ E P LAR+L+ V I+ +P YKAVA++I ++ +
Sbjct: 299 LKIREIAKESDIPVVENPPLARALYATVEIDQEVPEEHYKAVAEVIGFVFRMR 351
>gi|66046670|ref|YP_236511.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
syringae B728a]
gi|63257377|gb|AAY38473.1| Flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
syringae B728a]
gi|330899444|gb|EGH30863.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 378
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K ++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|289629017|ref|ZP_06461971.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330866461|gb|EGH01170.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 378
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLLVMLMGAGGLLMFGS-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ L D S++ L L A +++P L+ ++ + ++ +
Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L+ ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|330940692|gb|EGH43704.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 378
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K ++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|94500293|ref|ZP_01306826.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
RED65]
gi|94427592|gb|EAT12569.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
RED65]
Length = 375
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 90/352 (25%), Positives = 180/352 (51%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE P+ ++++ A ++G P S+E S ++ ++ + + ++S
Sbjct: 1 MAENENSQEKTEEPTPRRLQKAKDDGQIPRSKELSTSLVLIVGVLSIWLL-ADLLFSGAK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + ++ D ++ L + A + P ++L ++ + L + +
Sbjct: 60 NIFQYNFVIEREQIFDEKQMLKHLGASAYEAILTMTPTMMLILLAAALAPLALGGWMFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+S G+KR++ + +LV +KS+ K+++V + +L
Sbjct: 120 KALLPKANRISPLSGLKRMFGVKSLVELIKSWAKVLVVIGCTFLLFFIFNDKVLFLHREP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + V ++ ++V+D+ + +++ K++MS QE+KDE K++ G P
Sbjct: 180 GTRAIADSADLVMLCAFILACSTLLVSVIDVPYQIYEYMQKMRMSLQEVKDEHKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MM+ A ++ITNPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKQRIRRLQYEMSQRRMMDDVKDADVVITNPTHYAVALKYDSDQMGAPLMVAKGTDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA ++ I + E P LARS++ I IP Y AVAQ++ +Y
Sbjct: 300 LKIREIAKQNKIAVVEAPPLARSIYAFTKIGKEIPEGLYVAVAQVLAYVYQL 351
>gi|302389679|ref|YP_003825500.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
DSM 16646]
gi|302200307|gb|ADL07877.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
DSM 16646]
Length = 357
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 105/347 (30%), Positives = 180/347 (51%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + ++ + A G SRE + +LA + L F + S L
Sbjct: 7 SQEKTEKATPRRRQKARERGQVFSSRELNSALILLASFVLLKIFGIYIFENTGSFLRQFF 66
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
R+ IS I + + + P + ++ G+ +Q V +L + P
Sbjct: 67 IENLIRQDLSISDIYGIFYSSIVFVLKSTAPVAVGIVLVGLLVNFLQVGFVFSLEPISPK 126
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
R++ EG KRI+S +L+ +K+ VKIIL+ I E T+ + + L
Sbjct: 127 LDRINPVEGAKRIFSKRSLIELVKALVKIILIIYIFYGGFVEIKDTVALMLDMSFTESLG 186
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + ++ + + + + L+VLD G+ ++++ L MSK+++K+E+K+ GNP IK+R
Sbjct: 187 YFTSMMFRLGLKVGIALLVLSVLDYGYQWYEYEKSLMMSKEDVKEELKEVEGNPQIKSRI 246
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + R R +MM+ +A ++ITNPTH A+AL Y + + APV++AKG IA+K+++I
Sbjct: 247 RQVQRQMSRRRMMQEVKKADVVITNPTHIAIALGYDASVHAAPVVLAKGTGAIAEKIKEI 306
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +IPI E LA++LFK V + IP FY AVA+++ +Y K
Sbjct: 307 AEREDIPIVENKPLAQTLFKSVEVGDIIPEEFYNAVAEILAFVYSLK 353
>gi|157371217|ref|YP_001479206.1| flagellar biosynthesis protein FlhB [Serratia proteamaculans 568]
gi|157322981|gb|ABV42078.1| flagellar biosynthetic protein FlhB [Serratia proteamaculans 568]
Length = 398
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ K+EAP+ ++E A +G P SRE + ++A L + S + L
Sbjct: 18 EDSDLEKSEAPTPHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGSNMSQQLAMMLT 77
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + + + ++ L L A ++P + + I + ++ +L+ +
Sbjct: 78 QGL-NFDHSMVSNDKQMLRQLGMLLRQAVWALLPVMAGLTLVAITAPMLLGGLLLSGKSL 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K KR++ G+KRI+S L +K +K LVG + + L N+ ML ++ P
Sbjct: 137 KFDLKRMNPLTGLKRIFSSQVLAELLKGILKATLVGWVTGLYLWHNWAAMLHLVTQQPLD 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P +K
Sbjct: 197 ALANALQMIIFCGLLVVLALTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++
Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDKKMSAPKVLAKGAGEIALRI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++ +H IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 317 RELGMQHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366
>gi|326389464|ref|ZP_08211031.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
JW 200]
gi|325994469|gb|EGD52894.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
JW 200]
Length = 363
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + K+ +DA +G SRE + I+A + + P + + + + LL
Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A +++P +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMKRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361
>gi|288942622|ref|YP_003444862.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
180]
gi|288897994|gb|ADC63830.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
180]
Length = 384
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ ++EAP++K++ ++ +G SRE + F ++ +LLF ++
Sbjct: 1 MAENENGQERSEAPTAKRLRESREKGQVARSRELNTFIILIVGGAFLLFLGGGMAARISQ 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + D +V L HL A ++ P L M+ + ++ +
Sbjct: 61 LMIDGW-TLERGLIFDEGLLVPHLQHLLGRALLILAPLFGLLMVIALMGPILVGGLNFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +V+ G+KR++S+ L+ +K K LVG + T+++ + +L
Sbjct: 120 QALMPKFSKVNPISGLKRVFSVQGLMELVKGLGKFGLVGIVATLAIMSIWGNLLTLGELP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ + + +D+ + +L+M+ QEIKDE K++ G P
Sbjct: 180 VEQAIVQTVHMAAWLFLIAAAALLVVAAIDVPFQVWNHQKQLRMTLQEIKDEFKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MM +A ++ITNPTHYA+A+ Y+ AP L+AKG + +A
Sbjct: 240 EVKGRIRQLQHEMSQRRMMSEVPKADVVITNPTHYAVAISYVPAIMPAPRLLAKGTDAVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +R +A EH I E P +AR+++ +N IP + AVA+++ +Y +
Sbjct: 300 QAIRALAEEHRIVRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQIR 352
>gi|332533113|ref|ZP_08408982.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037395|gb|EGI73849.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 376
Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE P+ KK++++ +G S+E ++ I LL + + +
Sbjct: 1 MSE-DSGQEKTEEPTGKKVDESKKKGQVARSKELGTMFVLIFSAISLLLYGPEIGKGLYN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L S + + D + + + +S + + + + GI + +
Sbjct: 60 IMGRML-SLNRNEAYDTTKMFAVWASVSDVLIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++S +G KR++ V K+ +K +V + + +L
Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFSVVAGFAVFLINTFFDEILHLSIEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + HA + + + + + + +D + + + +LKM+ QE+KDE K S G+P
Sbjct: 179 APNNIIHALEILAWMFLALSCTLVIIAAIDAPYQSYTHHKQLKMTMQEVKDEYKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQRRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGIDEMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++RK+A + +PI E P L R+L+ + IP + AVAQ++ ++ K
Sbjct: 299 MQIRKVAIGNEVPILESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351
>gi|308187224|ref|YP_003931355.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
gi|308057734|gb|ADO09906.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
Length = 383
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 107/351 (30%), Positives = 185/351 (52%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ ++KTE+P++ ++E A EG P SRE + +LA ++ L + + + +
Sbjct: 1 MAE-DSDEDKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWMGGNMMAHRLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D IV + L A ++P + ++ I + ++ V +
Sbjct: 60 MVATGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGLVFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K++S G KR+++ K +K ILVG + + ++ ML IS
Sbjct: 119 KSIKFDLKKMSPMAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L H + +++L + + D+ W + + KLKMS QEI+DE KQ G+P
Sbjct: 179 PVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++
Sbjct: 299 LRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQ 349
>gi|162210026|ref|YP_331480.2| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
1710b]
Length = 405
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH
Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
S + D + ++ LSL + P L L + + + + +++
Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 245
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355
>gi|330972452|gb|EGH72518.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 378
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KS K +++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFVAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|253996636|ref|YP_003048700.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
gi|253983315|gb|ACT48173.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
Length = 387
Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 178/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE S K++E A EG+ P SRE + + +LA + +L ++ +
Sbjct: 1 MAEE-SDLEKTEDASPKRLEQAREEGDVPRSRELATVTVLLAAGLAMLMMGGQLADALKT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + D ++ ++ + P L+ I S + V +
Sbjct: 60 SMSSGL-SFQRAYAYDPMLLLMKISDNIYNLLLAFSPLALILFFVAIASPALIGGWVFSE 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G ++S N+L +KS K ILVG + + ++ + ++L
Sbjct: 119 KALIPKFGKLNPITGFSNMFSKNSLAELIKSIAKAILVGFVSYVVISHDMESILSLSLLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + I+ + + +D+ + +Q+ KLKM+K+E+K E K+S GNP
Sbjct: 179 LDQSIAELNHLLLTSFLAIVSVLVLIAAIDVPFQLYQYADKLKMTKEEVKRESKESDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+R + R R +MM A ++ITNPTHYA+A++Y + APV+VAKG + IA
Sbjct: 239 EIKSRIRQQQREMARRRMMAEIPNADVVITNPTHYAVAIKYKEGGMLAPVVVAKGADAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
K+R+ A EH + I E P LAR+++ + IP Y AVA+++ ++ +I
Sbjct: 299 LKIREAAEEHKVLIVEAPKLARAIYTHTELTHEIPEALYTAVAEVLAYVFQMRI 352
>gi|20807870|ref|NP_623041.1| flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
gi|20516434|gb|AAM24645.1| Flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
Length = 362
Score = 348 bits (892), Expect = 9e-94, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 180/348 (51%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ ++A +G SRE + ++ + + F + V + L LL
Sbjct: 13 GEKTEPATPKRRQEARKKGQVFQSREITSALVVVTGFLMINLFLQSFLGRVGNLLKFLLI 72
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + + I + ++ + +P +L + S Q V +
Sbjct: 73 TYSGANDDVFNTAGIWKIFYYVVNQIVLISVPVILAIFAVSLISTYFQVGFVFTAEPLTL 132
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L
Sbjct: 133 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 192
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 193 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 252
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH+A+AL Y NDAPV+VAKG++L+A K+++
Sbjct: 253 IRKKQRQISTRRMMQDLKKADVVITNPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 312
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IPI E LA++L+ + IPP Y+AVA+++ +Y +
Sbjct: 313 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 360
>gi|330953765|gb|EGH54025.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae Cit 7]
Length = 378
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K ++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|237799251|ref|ZP_04587712.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022106|gb|EGI02163.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 378
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S I ++ S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSD-IAAMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + T+ L D S++ L L A +++P L+ ++ + ++ +
Sbjct: 60 ELMRDNFTITRETLMDQSYMGKALLSSGLHALVVILPFLIAMLVAALVGPIMLGGWLFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KS K +++ + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALAVLNSERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEKGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|293604994|ref|ZP_06687390.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
43553]
gi|292816599|gb|EFF75684.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
43553]
Length = 384
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 183/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EA S +++E A EG SRE F + A + + ++
Sbjct: 1 MAEE-SDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGVIWAGGGSLYRGLSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH LA QR + D +V A ++P + + + S ++ V++
Sbjct: 60 VLHNGLA-FDQRIVTDPGVMVEQAVIGFGHALLALLPVFGVLAVVAVLSSVLLGGIVISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ +F ++SL G+KR++S +V +K+ K +LVG + + + ML +
Sbjct: 119 KPLQANFSKLSLFAGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLGLMHVA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALIKALSLVAICCALIVASLLVIVLLDVPWQIFSHLKKLRMSKEDVRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R R +MM RA +++TNPTHYA+AL+Y + ++ AP ++AKG LIA
Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPRADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A E+ IP E P LAR+L + V + IP Y AVA+++ ++ +
Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVELGKEIPAELYTAVAEVLAWVFQLR 351
>gi|261855327|ref|YP_003262610.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
c2]
gi|261835796|gb|ACX95563.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
c2]
Length = 379
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE PS K++ +A +G SRE + I L + +
Sbjct: 1 MAENENGQEKTEEPSEKRLREAREKGQVARSRELGSLALTAGSAIVFLVMGGHMLSRLEQ 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ ++ D + + L ++P L ++ + S L+ +
Sbjct: 61 MFRHAF-TLSRAEIMDPATMFHRLALSFSEGFLALLPFFLAAVVLAVSSTLLVGGWNFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G KR++S+ +LV +K+ K L+ I +
Sbjct: 120 QALAPQFNRLNPLSGFKRMFSMKSLVELLKTLAKFFLIAAIAIGLFEAMEKDFVGLGLMG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A + + + L + + ++D+ + +++ L+M++QE+ DE K+ G P
Sbjct: 180 LEAGLARAGTLLSWSFLGLSLGLLVVAMIDVPFQMYEYKKGLRMTRQEMIDEYKEVEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MMEA A +IITNPTH+++AL+Y + AP++VAKG + +A
Sbjct: 240 EVKQKIRQLQRQMAQRRMMEAVPTADVIITNPTHFSVALKYQPNSDAAPMVVAKGADEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+RKIA +++P+FE P LARSLF V + AIP Y AVAQ++ ++ K
Sbjct: 300 MTIRKIANANHVPLFESPQLARSLFAHVEVGDAIPSGLYVAVAQVLAYVFQMK 352
>gi|260772335|ref|ZP_05881251.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
69.14]
gi|260611474|gb|EEX36677.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
69.14]
Length = 376
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F + +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLIIGSVALMWFGEMLASRLYT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S ++ ++ D S + ++ ++ L+ + + +
Sbjct: 60 TMGRFF-SLSREEIFDSSKLFDIIAGTLTHLIFPLLLILITLFVAALIGAAGVGGVSFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+P ++S G KR++ + +LV KS +K++LV + + + +
Sbjct: 119 EAARPKLSKISPLSGFKRMFGMQSLVELFKSILKVLLVAGVAFYLIDASKNDLFQLSMDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +D+ + Q KLKM+KQEIKDE K + G P
Sbjct: 179 YPQNIFHALEILLNFILLISCSLLVVVAIDVPFQIWQHAEKLKMTKQEIKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQGTDKAPIVVAKGGDFLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREHEIMIVAAPPLARALYYTTELEQEIPDGLFVAVAQVLAYVFQIK 351
>gi|307945650|ref|ZP_07660986.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
gi|307771523|gb|EFO30748.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
Length = 359
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 194/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ KTE P+ K+++DAL++G+ S+E S + ++ + + F +V +
Sbjct: 1 MADDQDDAEKTEDPTQKRLKDALDKGDVAKSQEVSTWFTLAGTTLLIALFAPTIGAAVGN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + A + D + L S + +V L+ ++ I ++Q V
Sbjct: 61 HLKGFMEHAHDIPV-DGFALKALWRDTGQSIALIVGLPLMALVVMAIAGNMVQHQLVFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +VS G KR++S ++LVNF K KI +VG ++ + L + I A+
Sbjct: 120 ETMKPKLSKVSPLSGFKRLFSKDSLVNFAKGLAKIFVVGALMVLVLWPHRDEADIMIFAD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +L A F + ++L ++ F+ + D + ++W++K KMS +++KDE KQ+ G+P
Sbjct: 180 PVILLEEARFLILQLLGAVMAFMTVVAAADYAYQKNKWFNKQKMSLRDVKDEYKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R R +MM A AT+++TNPTH+A+AL+Y + AP+ +AKG + +A
Sbjct: 240 HVKGKIRQLRMERSRKRMMAAVPDATVVVTNPTHFAVALKYEEG-MGAPLCLAKGTDAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A E IP+ E P LAR+L+ V I +P YKAVA++I +Y +
Sbjct: 299 LKIRELAKEKKIPVVENPPLARALYASVEIEQEVPEEHYKAVAEVIGFVYRMR 351
>gi|254522000|ref|ZP_05134055.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
gi|219719591|gb|EED38116.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
Length = 377
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEN++ KTE P+ K++ DA +GN P SRE + A ++ ++ T+
Sbjct: 2 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGATA 61
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S Q ++ + L L ++ P +L+ ++ + L+ +
Sbjct: 62 WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFLLVIAPLVLVCLLASFVAPLVMGGLRWSQ 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR+Y + F KS +++ VG + + + T+ I
Sbjct: 121 KALLPDINRLNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++L+ + L +D + W KLKM+++E++ E+K+S G+P
Sbjct: 181 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A
Sbjct: 241 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPTVVALGVDETA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y +
Sbjct: 301 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 353
>gi|294635599|ref|ZP_06714076.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
gi|291091051|gb|EFE23612.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
Length = 401
Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ KTE P+ +IE A +G P SRE + + L LL S+ +
Sbjct: 16 EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSMLMLAVGLAILLLGGDYLASSLAVMIA 75
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L L + ++ L L A ++P LL M+ G + ++ + N +
Sbjct: 76 QGL-HFDHLLLSNDRQMLIQLGMLLRQAVAALLPVLLGLMLVGWCAPMLIGGFLFNPGSI 134
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K R++ G KR++S L +K +K LVG + L + ML I+ +
Sbjct: 135 KCELNRLNPLTGFKRMFSSQVLAELLKGVLKATLVGCVTGWFLWHYWPRMLRLITESSLE 194
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ A V ++++L + + D+ + +KL+M+KQEIKDE K+ G+P +K
Sbjct: 195 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQLWSNLNKLRMTKQEIKDEFKEQEGDPHVK 254
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA+++
Sbjct: 255 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGNIAQRI 314
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K
Sbjct: 315 KALGMEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 364
>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
seropedicae SmR1]
gi|300074126|gb|ADJ63525.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
seropedicae SmR1]
Length = 391
Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TE + K+IE A +G+ P SRE + +L + F P + S+
Sbjct: 1 MAE-DSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSL-D 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ V + S + + D ++ L++ L + VIP L + + + L + N+
Sbjct: 59 RIMVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P F +++ G ++S+N+LV K+ +K +LVGT+ +++ ++ +
Sbjct: 119 SSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA + I ++ + + VLD+ + + KL+M+++E+K E K+S G+P
Sbjct: 179 LKTAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + +++ R+ R +MM A +++TNPTHYA+AL+Y + + AP +VAKG + IA
Sbjct: 239 HIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH +P+ E P LAR+L I IP Y AVA+++ ++ +
Sbjct: 299 AKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLR 351
>gi|238927446|ref|ZP_04659206.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
43531]
gi|238884728|gb|EEQ48366.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
43531]
Length = 374
Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 102/347 (29%), Positives = 180/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK DA +G S+E + +L L + S+ +
Sbjct: 25 GGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDYIYLSIAGYTTYVF 84
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
++ Q + D +I+ + +++ ++ P + M+ G+ Q N ++
Sbjct: 85 SNLNQ--VVDAENILRIFIGIAIVLAKTAFPIMFAIMLIGLAINFFQVGLTFNTESIEFK 142
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G RI+S +LV KSF KI+++G + + E M F+ + + L
Sbjct: 143 LDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSLS 202
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + +++ I + ++D G+ Q LKM+KQE+KDE+KQS G+P IK +
Sbjct: 203 LVAEIIFHMAFIVIGVIMVMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGKI 262
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTH+A+AL Y Q AP++VAKGQ+++A+++++I
Sbjct: 263 RQKQRQMAMARMMKEVPKADVIITNPTHFAIALSYQQG-MSAPLVVAKGQDIVAQRIKEI 321
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +PI E LAR+++ V I AIP Y+AVA+++ +Y K
Sbjct: 322 AREARVPIVENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368
>gi|149188098|ref|ZP_01866393.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
gi|148838086|gb|EDL55028.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
Length = 376
Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L+ F ++
Sbjct: 1 MAESD-GQERTEDATPQRLKQAREKGQVARSKELASVSVLIVGALSLMMFGEGLARALFG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ ++ D + + + S ++ L + + + +
Sbjct: 60 SMARLF-NLSREEIYDSTKLFDVALGALSSLLLPLLLILFVLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR+ + + V +KS +K+ LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVTLVAGMAFYLVNASRADLFQLSMEV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P
Sbjct: 179 FPQNIFHALDILLNFILLISATLLIVVAIDIPFQIWQHANQLKMTKQEVKDEFKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM +A +IITNP H+++ALRY Q ++ APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIITNPEHFSVALRYKQGQDKAPVVVAKGIDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH+I + P LARSL+ + IP + AVAQ++ +Y K
Sbjct: 299 LKIREVAREHSIYVIPSPPLARSLYHTTELEQEIPDGLFAAVAQILAYVYQLK 351
>gi|261407965|ref|YP_003244206.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
gi|261284428|gb|ACX66399.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
Length = 362
Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S E S S +LA LL F +
Sbjct: 14 GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + +++ L + L+ P + + + + +Q +L +K F
Sbjct: 74 NRLSMNVTK-DNVMELFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P +I +
Sbjct: 133 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ I + + L VLD + + + ++MSKQ+IKDE K+ G+P+IK + +
Sbjct: 193 VADITMSLGFKIAIGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A ++++IA
Sbjct: 253 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH I E LAR+L+++ I +IP ++AVA+++ +Y K
Sbjct: 313 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 358
>gi|253573537|ref|ZP_04850880.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847065|gb|EES75070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
786 str. D14]
Length = 363
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 178/346 (51%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK ++A +G S+E + ++A + L F + +
Sbjct: 14 GEKTEKATPKKRQEARKKGQVAKSQELTGALLLMAGFLCLTAFAGYFKDRLIGLFVDVFY 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
++ ++++ ++ ++ L+ P L+ ++ + + Q +L +K F
Sbjct: 74 HRLSMEVTK-TNVMAMMGEYAVQVLLLLAPIFLVVIVVAVVANYAQIGFMLVGEPLKIKF 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G K I+S+ +LV F+K+ K++++G ++ ++ ++ + +
Sbjct: 133 SKLDPIKGFKNIFSMRSLVQFVKTLFKLLIIGYLVYSTIWGYRGSLSALGHVSVDDTFHF 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + I + L VLD + ++ LKMSKQ+IKDE K+ G+P+IK + +
Sbjct: 193 TAQLTMNLGLKIAAALIVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKIR 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTH+A+AL+Y ++ DAP ++AKGQ+ +A ++++IA
Sbjct: 253 ERQRRMALQRMMQEVPKADVIITNPTHFAVALKYDGSKMDAPQVIAKGQDYVALRIKEIA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH + E LAR+LF++ I IP ++AVA+++ +Y K
Sbjct: 313 KEHGVITMENKPLARALFQRTEIGDTIPADLFQAVAEVLAYVYRIK 358
>gi|330880588|gb|EGH14737.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 378
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ L D S++ L L A +++P L+ ++ + ++ +
Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ +
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + L M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKTLLMTKQEVRDEQKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|300717104|ref|YP_003741907.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
gi|299062940|emb|CAX60060.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
Length = 381
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ + KTE+ + +IE A EG P SRE + ++A L L + + +
Sbjct: 1 MA-GDSEEEKTESATPHRIEKAREEGQIPRSRELTSVLMLVAGLSILWITGATMARKIGA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ LL +L +IP + ++ I + ++ V++
Sbjct: 60 LLADGLK-FNHSVVSDTSQMLHLLGNLVQQGIFTLIPMMAGLVLVAIAAPMLLGGVVISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +GI +++S +KS +K ILVG + + + ++ ML IS +
Sbjct: 119 KAIKFDVGKMNPIKGIGKLFSGQTAAELLKSVLKAILVGCVTWLYIRHHWPDMLRLISES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P++ L ++ + ++++ ++ + + D+ W + ++ L+M++Q+I+DE KQ G+P
Sbjct: 179 PYNALANSLNMIAMCSVLVVFGLSPMVMFDVFWQLYSYFKGLRMTRQDIRDEYKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDERKMSAPKVVAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IPI E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 299 LRIRELGKEHRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351
>gi|229544411|ref|ZP_04433469.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
gi|229324896|gb|EEN90573.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
Length = 360
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 100/346 (28%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK DA +G S++ +LA ++L F S + + +
Sbjct: 13 GEKTEKATPKKRRDARKKGQTAKSQDIVTAVMLLAVFLFLYFGASSIGSPMMALFRQAFS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + + S + L+T + + +++P + + ++ G+ + Q + +KP+
Sbjct: 73 KYMLQDVTEQS-VGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKPNI 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G+KRI+SI LV +KS +K+ +VG + + N + + L
Sbjct: 132 NKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTLAA 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
I + + L VLD + + ++MSKQEIK+E K G+P+IK++ +
Sbjct: 192 VGHLAAITGISASVALFVLAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIKSKIR 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTH+A+ LRY +T++DAP++VAKG + +A+K++ IA
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKIKSIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH+I + E LAR+L++QV + IP F+KAVA+++ +Y K
Sbjct: 312 KEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIK 357
>gi|304396256|ref|ZP_07378138.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
gi|304356625|gb|EFM20990.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
Length = 382
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 104/348 (29%), Positives = 183/348 (52%), Gaps = 1/348 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D+ ++KTE+P++ ++E A EG P SRE + +LA ++ L + + + + +
Sbjct: 2 SDSDEDKTESPTAHRLEKAREEGQIPRSRELTSVLMLLAGIMILWMGGNMMAHRLAAMVA 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D IV + L A ++P + ++ I + ++ V + +
Sbjct: 62 TGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGIVFSGKSI 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K K+++ G KR+++ K +K ILVG + + ++ ML IS P +
Sbjct: 121 KFDPKKMNPIAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEAPVT 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L H + +++L + + D+ W + + KLKMS QEI+DE KQ G+P +K
Sbjct: 181 ALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDPHVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA ++
Sbjct: 241 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIALRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++
Sbjct: 301 RELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQ 348
>gi|304316890|ref|YP_003852035.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778392|gb|ADL68951.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 357
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 99/348 (28%), Positives = 181/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ +DA +G SRE + +A + + F I + + + L
Sbjct: 8 GEKTEPATPKRRQDARKKGQVFQSREVTSAIITIAGFLVIYFTVQNSIEEIMNLIKYLFL 67
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ ++ I L + +L++P + + + S Q V +
Sbjct: 68 NYGGASDNTFTVNGIYKLFEIILPVFLKLILPTVATVFLVALVSTYAQVGFVFTSESLNI 127
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R++ EGIKR++S ++ +K+ VKI ++G ++ L Y + + + ++
Sbjct: 128 KLERLNPLEGIKRMFSRRTILELLKAVVKIGILGYVMYSFLIGQYKGIPQLLDMSVQDLI 187
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
++ +L+ I + + L V+D + + + S L+MSK++IK+E K++ GNP IK+
Sbjct: 188 KYSLNIFGGILLRIFIVLIVLGVVDYIFQWRDYESNLRMSKEDIKEEFKETEGNPQIKSE 247
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R +M++ +A ++ITNPTH A+AL Y NDAPV+VAKGQ+ IA+++++
Sbjct: 248 IKKKQRQISMRRMIQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQRIKE 307
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +++I I E LA+SL+K I +IPP YKAVA+++ +Y +
Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTDIGDSIPPELYKAVAEVLAYVYSLR 355
>gi|77165624|ref|YP_344149.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
19707]
gi|254433995|ref|ZP_05047503.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
gi|76883938|gb|ABA58619.1| Flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
19707]
gi|207090328|gb|EDZ67599.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
Length = 377
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + +TE P+ K+ E+A +G P SRE S +L+ + L+ P + +
Sbjct: 1 MADS-SAQERTEQPTPKRQEEARKKGQVPRSRELSTTVLLLSSALGLVLIGEPLLQGLAD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ + + A +++ P L L ++ + + L+ +
Sbjct: 60 LMRQGL-QLERAQIFEPKAAILQFQQGVGEAVKIITPFLALTLIAALAAPLLMGGWSFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +++++ +G+KRI+ + +K+ +K +L+ + + ++
Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVGCLLFWLFSPDLIALGRQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + L+ + +A + V+D + +LKM++QE+K+E K++ GNP
Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQGWNHTRQLKMTRQEVKEEHKETDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM A +A +++ NPTHYA+AL Y Q + AP +VAKG + +A
Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R +A +N+P+ P+L+R+++ ++ IP Y+AVAQ++ + +
Sbjct: 299 IKIRTVAAGNNVPVLSAPALSRAIYHSTKLDQEIPAGLYRAVAQVLAYVLQLR 351
>gi|190574224|ref|YP_001972069.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
K279a]
gi|190012146|emb|CAQ45769.1| putative flagellar biosynthetic protein FlhB [Stenotrophomonas
maltophilia K279a]
Length = 376
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEN++ KTE P+ K++ DA +GN P SRE + A ++ ++ ++
Sbjct: 1 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S Q ++ + L L ++ P +L+ ++ + L+ +
Sbjct: 61 WMKHAL-SPEQGLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLVMGGLRWSQ 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR+Y + F KS +++ VG + + + T+ I
Sbjct: 120 KALLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++L+ + L +D + W KLKM+++E++ E+K+S G+P
Sbjct: 180 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A
Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGTMNAPTVVALGVDETA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y +
Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352
>gi|27885003|gb|AAD56298.2| FlhB [Pseudomonas putida]
Length = 380
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 103/354 (29%), Positives = 180/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + L LL F ++ +
Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVVLTLGGAGALLTFGGHLAETLLT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L L + + + + +
Sbjct: 61 LMRMNF-SLTRDVIVDERAMGAFLLASGKMAIWAVQPVLGLLFVLALIGPVALGGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R+S GIKR++S+N++ +K+ K ++ + + L+ + +L +
Sbjct: 120 SLLQPKFSRMSPLSGIKRMFSLNSVTELLKAVAKFFVILVVALVVLSHDRQALLAIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA V + + + + +D+ + Q KLKM+KQE++DE K S G P
Sbjct: 180 LEQAIIHAVQVVGWSALWMAAGLLLIAAVDVPFQLWQTQQKLKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|213022149|ref|ZP_03336596.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 336
Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 179/338 (52%), Gaps = 2/338 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
++R+I EH +P E P LAR+L++ I IP
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQL 336
>gi|329929309|ref|ZP_08283062.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
gi|328936678|gb|EGG33121.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
Length = 365
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S E S S +LA LL F +
Sbjct: 17 GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 76
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + +++ L + L+ P + + + + +Q +L +K F
Sbjct: 77 NRLSMNVTK-DNVMQLFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 135
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P +I +
Sbjct: 136 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 195
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ I + + L VLD + + + ++MSKQ+IKDE K+ G+P+IK + +
Sbjct: 196 VADITMSLGFKIAVGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 255
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A ++++IA
Sbjct: 256 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 315
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH I E LAR+L+++ I +IP ++AVA+++ +Y K
Sbjct: 316 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 361
>gi|254478867|ref|ZP_05092231.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
DSM 12653]
gi|214035180|gb|EEB75890.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
DSM 12653]
Length = 360
Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 179/348 (51%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ ++A +G SRE + I+ + + F + V + L LL
Sbjct: 11 GEKTEPATPKRRQEARKKGQVFQSREITSALVIVTGFLMIHLFLQSFLGRVGNLLKFLLI 70
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + + I + ++ + +P +L + S Q V +
Sbjct: 71 TYSGANDDVFNTAGIWKIFYYMVNQVVLISVPIMLAIFAVSLISTYFQVGFVFTAEPLTL 130
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L
Sbjct: 131 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 190
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 191 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 250
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++I NPTH+A+AL Y NDAPV+VAKG++L+A K+++
Sbjct: 251 IRKKQRQISTRRMMQDLKKADVVIINPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 310
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IPI E LA++L+ + IPP Y+AVA+++ +Y +
Sbjct: 311 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 358
>gi|167040311|ref|YP_001663296.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
gi|166854551|gb|ABY92960.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
Length = 360
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ +DA +G SRE + I+A + + P + + + LL
Sbjct: 11 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A + +P +LL + + S +Q V +
Sbjct: 71 TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 130
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL
Sbjct: 131 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++
Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 310
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 311 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358
>gi|160939623|ref|ZP_02086971.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
BAA-613]
gi|158437414|gb|EDP15178.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
BAA-613]
Length = 353
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 171/352 (48%), Gaps = 4/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + KTE + K+ +D +GN S + + S+L L S
Sbjct: 1 MA----AEEKTEKATPKRRQDERKKGNVFQSNDVAAVCSLLVLFHSLKALAPMMYESFGE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+H+ + A+ + L L + +P L + ++ + Q +
Sbjct: 57 CMHLFFSYASSPDIFWQEGGKGLFMKAVLVFFKASLPLLFIGVLTAVIVTFFQTRMAFSW 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +K F R+S +G KR++S+ +++ +KS +KI ++G ++ L + +
Sbjct: 117 DVLKFKFDRISPLKGFKRMFSLRSVIELLKSLIKITVLGWVVWFFLKGRLTELTGLMEGT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S L + TV ++ + + L +D + + ++ L+MSKQEIK+E KQ+ G+P
Sbjct: 177 VASALIYVGNTVVSLVDTVGIAFVFLGAVDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + R +MM+ A ++I NPTH+A+AL Y +N APV++AKG + +A
Sbjct: 237 QIKGKIREKQRQMASRRMMQNVPNADVVIRNPTHFAVALGYDSGKNRAPVVLAKGADHLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+ ++A + I E+ LAR L+ V ++ IP +Y+ VA+++ +Y
Sbjct: 297 LKIVEVAEASGVYIMEDRPLARGLYDTVEVDMEIPEEYYQTVAKILAFVYKL 348
>gi|330964680|gb|EGH64940.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 369
Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F + GI + S
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGA-GIAQMMS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ + D S++ L L A +++P L+ + + ++ + +
Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ +KR++S + LV +KSF K +++ + + L++ ++
Sbjct: 120 KSLMPKFSRMNPAARLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|330961236|gb|EGH61496.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 378
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S +++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGSGGLLIFGSDIAEMMSA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ L D S++ L L A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TITRETLMDQSYMGKALLSSGLHALVVVLPFLIAMLLAALVGPILLGGWLFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR+++ + LV +KS K +++ + L ++
Sbjct: 120 KPLMPKFSRMNPAAGLKRMFAPSALVELLKSLGKFLIILAVALAVLNSERKDLIAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + +A + +D+ + +Q + KL M+KQE++DE K S GNP
Sbjct: 180 LEQAMIHSLIVVGWSSFWMACGLAFIAAVDVPFMLYQAHKKLLMTKQEVRDEHKNSDGNP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGSDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352
>gi|254501745|ref|ZP_05113896.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
gi|222437816|gb|EEE44495.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
Length = 359
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ K+++DA ++G+ P S+E S + ++ + + S+ +
Sbjct: 1 MADETDDSEKTEDPTQKRLKDAHDKGDVPKSQEVSTWFTLAGATLMIAIMAPGAAASLGN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + A Q + D + L S + +V LL ++ + LIQ P+L
Sbjct: 61 LLKGYIEHAHQIPV-DGYALKALWRDTGQSVALIVGLPLLALVVMAVFGNLIQHQPLLTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +VS G KR++S +LVNF K VKI++VG ++ L + I A+
Sbjct: 120 ETIKPKLSKVSPLSGFKRLFSSESLVNFAKGMVKILVVGAVMVAVLWPHRDEAEIMIFAD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
IL A + +VL IL + + D + ++W++K KMS +E+K+E KQ+ G+P
Sbjct: 180 EMIILEEARILILQVLAAILAVMTVVAAADFVYQKNKWFNKQKMSLKEVKEEFKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R R +MM A AT+++TNPTHYA+AL+Y + AP+ VAKG + +A
Sbjct: 240 HVKGKIRQLRMERSRKRMMSAVPAATVVVTNPTHYAVALQYEEG-MGAPLCVAKGTDALA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A EH +P+ E P LAR+L+ V I +P +KAVA++I ++ +
Sbjct: 299 LRIRDVAKEHEVPVIENPPLARALYASVEIEQEVPEEHFKAVAEVIGFVFRMR 351
>gi|121533743|ref|ZP_01665570.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
Nor1]
gi|121307734|gb|EAX48649.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
Nor1]
Length = 376
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 174/346 (50%), Gaps = 2/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ E+A +G S E +LA + + + S + L +
Sbjct: 29 QEKTEEATPKRREEARKKGQVAKSVELGSALCLLAAFFTIKLTGTYIYEQLASYMQFLFS 88
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
T+ + I+ L+L ++V+P +L+ + + +Q ++ +KP
Sbjct: 89 RFTKEDM-TIASSYRFFLDLALIFLKIVLPIMLVILAVSLLVNFMQVGFTFSVEPLKPQL 147
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ G++R++S +LV +KS K+ ++ I + E + L
Sbjct: 148 SRINPLAGMQRLFSKRSLVELVKSLFKVAIISYFIYQFIIEETLNIALLSRLALRDSLAV 207
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ I + I L +LD + + + LKM+KQE+K+E KQ+ GNP IK++ K
Sbjct: 208 IAALTFDLAFRIGVVILVLAILDYYYQWWEHNQNLKMTKQEVKEEFKQTEGNPQIKSKIK 267
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R+ +MM+ +A +++TNPTH+A+AL Y AP+++AKGQ+ +A++++ +A
Sbjct: 268 ERQRALAMRRMMQEVPKADVVVTNPTHFAIALLYE-KTMTAPMVIAKGQDFMAERIKLVA 326
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+ + I E +LAR+L+ V I +PP YKAVA+++ +Y K
Sbjct: 327 KENGVAIVENKALARALYDTVEIGETVPPELYKAVAEVLAYVYRLK 372
>gi|225375342|ref|ZP_03752563.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
16841]
gi|225212831|gb|EEG95185.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
16841]
Length = 367
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 90/357 (25%), Positives = 174/357 (48%), Gaps = 5/357 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE ++KK+ +A +G S+E + ++ + L F S + +
Sbjct: 9 AKDGPGGEKTEPATAKKLREAREDGKVVKSKELTAAFDLIILFLVLKIFVSFVGNRLMNS 68
Query: 62 LHVLLASATQRKLEDI-----SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ E+ + L++ + + +P + +IQ
Sbjct: 69 FVDIYGRIPDIVRENAVDVTEKSVAALMSDALIQILIVCVPFFAFGFVVTALISVIQVGW 128
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
+ ++P F + + G KRI+S +++ +KS +KI ++ + S+ + +
Sbjct: 129 KVTGKPLQPKFDKFNPINGFKRIFSKDSIFELVKSILKIFVIVYVAYTSIRGHAQDIFIL 188
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ + + I L + + D + +++ +KM+KQE+KDE K +
Sbjct: 189 YEIPLMQAIMLCGTVIINAGLKISLVYLVIGLADFIYQKYRFNEDMKMTKQEVKDEFKNT 248
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
GNP IK RQ+ R R +MM+ +A ++ITNPTH+A+A++Y + APV++AKG+
Sbjct: 249 EGNPEIKGRQRQRMREASRRRMMQDVPKADVVITNPTHFAVAIKYDAETSKAPVVLAKGE 308
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A+K+++ A EH+I I E LAR L+ V I IPP Y+AVA+++ +Y+ +
Sbjct: 309 DYLAQKIKEAAREHHIEIVENKPLARMLYANVDIGQEIPPELYQAVAEILAMVYNMR 365
>gi|15642119|ref|NP_231751.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|147674451|ref|YP_001217641.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O395]
gi|153818990|ref|ZP_01971657.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
gi|153822901|ref|ZP_01975568.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
gi|227082245|ref|YP_002810796.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
gi|229507795|ref|ZP_04397300.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
gi|229511968|ref|ZP_04401447.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
gi|229519104|ref|ZP_04408547.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
gi|229607340|ref|YP_002877988.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
gi|254849205|ref|ZP_05238555.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
gi|298497858|ref|ZP_07007665.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
gi|9656670|gb|AAF95265.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|126510485|gb|EAZ73079.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
gi|126519597|gb|EAZ76820.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
gi|146316334|gb|ABQ20873.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
gi|227010133|gb|ACP06345.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
gi|227014016|gb|ACP10226.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
gi|229343793|gb|EEO08768.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
gi|229351933|gb|EEO16874.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
gi|229355300|gb|EEO20221.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
gi|229369995|gb|ACQ60418.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
gi|254844910|gb|EET23324.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
gi|297542191|gb|EFH78241.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
Length = 376
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|300914395|ref|ZP_07131711.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
gi|307724369|ref|YP_003904120.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
gi|300889330|gb|EFK84476.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
gi|307581430|gb|ADN54829.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
Length = 363
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ +DA +G SRE + I+A + + P + + + LL
Sbjct: 14 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A + +P +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361
>gi|117923329|ref|YP_863946.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
gi|117607085|gb|ABK42540.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
Length = 355
Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTE P+SK++ D+ N+G S+E +LA L L + ++
Sbjct: 1 MADED-KDSKTEEPTSKRLSDSRNKGQVVSSKEVPTALLMLAALAVFLVQGNELWQALQR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+H L+ + + + + + + + P LF++ I S LIQ ++
Sbjct: 60 KMHFFLSGQISDDI-TPTGVSLIFNEIIRAVVMDLAPFFALFLVVAIISGLIQHGWLITF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +V+ +G+KR++S+ +LV KS VKI ++ + +++ N +L
Sbjct: 119 EPLMPKFSKVNPLQGLKRLFSVRSLVEAFKSIVKIFVISFAVYLAMRNNIDQILGLADTT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
F ++L + L + VLD + + L+MSKQEIKDE+KQ G+P
Sbjct: 179 ITEFTTLMFKDSLEILWRVTLAFLLIAVLDFIYQKFDYIKGLRMSKQEIKDEMKQMEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + I R + +MM+ +A +IITNPTHYA AL+Y + AP LVAKG+ LIA
Sbjct: 239 LLKGRIRQIQRELAQSRMMQEVPKADVIITNPTHYACALQYTPGQMSAPKLVAKGKGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+NIP E P LAR+L++ V + IPP +KAVA+++ ++ K
Sbjct: 299 ARIRELADENNIPRVENPPLARTLYRDVELEQFIPPELFKAVAEVLAYVFSLK 351
>gi|229524122|ref|ZP_04413527.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
VL426]
gi|229337703|gb|EEO02720.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
VL426]
Length = 376
Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEVLAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|291617775|ref|YP_003520517.1| FlhB [Pantoea ananatis LMG 20103]
gi|291152805|gb|ADD77389.1| FlhB [Pantoea ananatis LMG 20103]
Length = 397
Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats.
Identities = 100/350 (28%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ + KTE+P++ ++E A EG P SRE + +LA ++ L + + + + +
Sbjct: 17 ENSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWVGGAMMAHRLAAMVS 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D I+ + +L + A ++P L ++ I S ++ V++ +
Sbjct: 77 TGLR-FDHAMVTDDKIIIAHVGNLIMQAIAALLPLLGGLVLVAIASPMLLGGVVISGKSI 135
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K F +++ G+KR+++ K +K ILVG + + ++ ML I+ +P +
Sbjct: 136 KVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDMLRLIAESPTT 195
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L H + +++L + + D+ W + + KL+MS+QEI+DE KQ G+P +K
Sbjct: 196 ALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQEGDPHVK 255
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA ++
Sbjct: 256 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGAGDIALRI 315
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++ EH IP+ E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 316 RELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQLR 365
>gi|254505032|ref|ZP_05117183.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
gi|222441103|gb|EEE47782.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
Length = 358
Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats.
Identities = 126/353 (35%), Positives = 208/353 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+KTE P+ KKI+DA+ +GN P+S+EA + + ++ L+ F + G+ + S
Sbjct: 1 MSEEADKDSKTEEPTEKKIQDAIEKGNTPVSKEAPVLAMLIGALLIGGFAITSGVRQLVS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ LL + L + + + L LS+ + P + + + G+ S +Q P +
Sbjct: 61 DMAHLLDVSGGLDLGNSADALMLSHSLSIKVGLFLAPIIAILSVSGLASAFLQNKPSIVP 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N +KP ++SL++G RI+ V F+K+ K V I+ + +++ + +
Sbjct: 121 NRIKPELSKLSLKKGWSRIFGAQGFVEFLKAVFKFSTVSAIVYAQFRAHESDLINAMFTD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ +++ + + L +DI WS W L+M+KQE+KDE KQ G+P
Sbjct: 181 PSALPEMILQISLRLISGVCIVTILLVTVDILWSRSHWRKNLRMTKQEVKDEHKQMEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K RQ+S+AR R R++MM A +AT+++ NPTH+A+ALRY +N APV+VAKGQ+LIA
Sbjct: 241 IVKARQRSLARDRARNRMMSAVPQATLVVANPTHFAVALRYDGEKNPAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA ++IP+ E+ LARSL+ + IPP FY+AVA++I +Y +K
Sbjct: 301 LKIREIAETNDIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICFVYSRK 353
>gi|256750759|ref|ZP_05491644.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750342|gb|EEU63361.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
CCSD1]
Length = 363
Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 107/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K+ +DA +G SRE + I+A + + P + + + LL
Sbjct: 14 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A +++P +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IP Y+AVA+++ +Y K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPSELYQAVAEVLAYVYSLK 361
>gi|194365643|ref|YP_002028253.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
R551-3]
gi|194348447|gb|ACF51570.1| flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia
R551-3]
Length = 376
Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+++ KTE P+ K++ DA +GN P SRE + A ++ ++ ++
Sbjct: 1 MSEDESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S Q ++ + L L ++ P +L+ ++ + L+ +
Sbjct: 61 WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLLMGGLRWSQ 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR+Y + F KS +++ VG + + + T+ I
Sbjct: 120 KAMLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++L+ + L +D + W KLKM+++E++ E+K+S G+P
Sbjct: 180 LETAITDGLSFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A
Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPKVVALGVDETA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y +
Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352
>gi|331006676|ref|ZP_08329954.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC1989]
gi|330419508|gb|EGG93896.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC1989]
Length = 377
Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+D+ KTE + KK E A +G P S+E S +LA I L F S+
Sbjct: 1 MSESDSSQEKTEEATPKKAEKAKEDGQVPRSKELITTSVLLAGTIGLYLFGGILANSMV- 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ L + ++ + D +++ L A +IP + ++ I + + +
Sbjct: 60 DIAKLNFAISREAIFDPAYMFSNLGQSFYDAFLALIPIFAVLLIAAIVGPIGLGGWLFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR++S+ L+ K+ K++L+ + + L ++ +
Sbjct: 120 KSMMPKMSRMNPGAGLKRMFSVTALIELAKALAKVVLIILLSLLLLKSLEGELMSLAYQD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + H+ I + L + ++D+ + KLKM+ QE+KDE+K + G P
Sbjct: 180 INASIMHSLEISMWSAIALSLVTIFIAIVDVPIQIWESAKKLKMTMQEVKDEMKDTDGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MM A ++ITNPTHY++A++Y + P++VAKG +L+A
Sbjct: 240 EVKGRIRQLQQEIANRQMMGEVPEADVVITNPTHYSIAVKYKPEMMETPIVVAKGVDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH++ I E P LAR+++ I+ IP Y AVA+++ ++ +
Sbjct: 300 FRIREVAKEHSVDIVESPILARAIYNTTKIDEPIPKGLYIAVAKVLAYVFQLR 352
>gi|167037650|ref|YP_001665228.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|166856484|gb|ABY94892.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 360
Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + K+ +DA +G SRE + I+A + + P + + + LL
Sbjct: 11 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A +++P +LL + + S +Q V +
Sbjct: 71 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 130
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL
Sbjct: 131 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++
Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 310
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 311 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358
>gi|71281473|ref|YP_268257.1| flagellar biosynthesis protein FlhB [Colwellia psychrerythraea 34H]
gi|71147213|gb|AAZ27686.1| flagellar biosynthetic protein FlhB [Colwellia psychrerythraea 34H]
Length = 376
Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D+ KTE P++KK+ DA +G S++ F ++ +L S+ +
Sbjct: 1 MADSDSG-EKTEEPTAKKLTDARKKGQIARSKDLGTFFVLVGSACAMLLMGKALANSMAN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S ++ + D++ + ++ ++ + M+ + +
Sbjct: 60 MMSHMF-SLSREEAMDVNALFKVINDGVYQIIPPLLWIFFIVMLAAFIGNTLLGGMSFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P ++S G KR++ + V +KS +K +V + + L+ + +L
Sbjct: 119 DAMMPKASKLSPMAGFKRMFGVQAAVELIKSVLKFFVVFIVAFLLLSGLFEEILGLSRET 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA ++ + +++ L I + V+D + +LKM+KQEIKDE K + G+P
Sbjct: 179 IPANFEHAITMLQWMFLVLALSIGIIVVIDAPYQVWNHNRQLKMTKQEIKDEHKGTEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + +MM+ + ++ITNPTH+++AL+Y APVL AKG + +A
Sbjct: 239 EIKGRIRRTQYEMSQRRMMQDVPESDVVITNPTHFSIALKYDAAAGGAPVLSAKGVDEMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+R IA EH I I + P+LARSL+ + IP + AVAQ++ I+
Sbjct: 299 LHIRTIAKEHQIEIIQSPALARSLYYTAEVGDDIPEELFAAVAQVLAFIFQL 350
>gi|121727196|ref|ZP_01680363.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
gi|153828614|ref|ZP_01981281.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
gi|262191369|ref|ZP_06049559.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
gi|121630441|gb|EAX62834.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
gi|148875885|gb|EDL74020.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
gi|262032744|gb|EEY51292.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
Length = 376
Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|239826631|ref|YP_002949255.1| flagellar biosynthesis protein FlhB [Geobacillus sp. WCH70]
gi|239806924|gb|ACS23989.1| flagellar biosynthetic protein FlhB [Geobacillus sp. WCH70]
Length = 360
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 170/346 (49%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + + +L + L F + + ++
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSADINTAIVMLVVFLVLYFLGTFYKEKLLHFMYQSFE 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L I + L + + LV P ++ + +Q + +K +
Sbjct: 73 QYARVDL-TIDSVHRLSITWLKNMAMLVAPIFFAAVIAACLANFLQVGFLFTTEPLKMKW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+ +G KR+ S+ +V +KS +KI +VG + L +L + + + L
Sbjct: 132 NRLDPVQGFKRMISLRAIVELLKSILKISVVGLVTFALLWFQIDHILSLTTKSISTTLSS 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + + ++MSKQ+IKDE K++ G+P+IK++ K
Sbjct: 192 LASLTAKMGLYASSALLFLAIFDYLYQRFDFEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPMVVAKGVDYVALKIKQLA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357
>gi|326204607|ref|ZP_08194463.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
2782]
gi|325985174|gb|EGD46014.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
2782]
Length = 381
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE + KK DA +G SRE + ++ ++ + F ++ L
Sbjct: 30 DKTEKATPKKKSDARKKGQVFQSREVTASLILIVTVVAMRIFGGTIYAQLSQYLKKTFNE 89
Query: 69 ATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
D + + L + + ++ V+P LL+ + + Q + + +K
Sbjct: 90 YLTIKDAIDFNILANLFIDVLMVLAKTVLPLLLVAFLTALIVNYAQVGILFTMETLKIKG 149
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ G KRI+S+ ++V +KS +KII+VG + L +L I + S+L
Sbjct: 150 DRINPLSGFKRIFSLRSVVELLKSIIKIIIVGWVAYSYLKSKTEQVLTLIDTDLMSVLIF 209
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V + I + + L D + + + LKM+KQE+K+E KQ GNP IK++ K
Sbjct: 210 IADAAFTVALRICMAMVLLGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGNPEIKSKIK 269
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTH+A+AL+Y ++ AP +VAKGQ+ IA ++++IA
Sbjct: 270 QKQRQMSLKRMMQDIPKADVIITNPTHFAVALKYDSEKSAAPFVVAKGQDYIALRIKQIA 329
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K
Sbjct: 330 ADNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375
>gi|150390466|ref|YP_001320515.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
QYMF]
gi|149950328|gb|ABR48856.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
QYMF]
Length = 361
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ KK +D+ +G S+E + ++ + L F S ++ S +
Sbjct: 12 EEKTERPTPKKRKDSREKGQVLQSKELNSAFLLIGAFVILGLFSSYIGMTMKSFTRSIYV 71
Query: 68 SATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
L I ++ LL + + +++ P + ++ G+ +Q + +
Sbjct: 72 EYLNTDYLFSIQNLYRLLVYSLYNLLKIIAPISIASLLIGLAVSYLQVGYLFTTKTLAFK 131
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ EG K+I+S+ +V KSF+KI LVG I+ T+ + ++ + I+
Sbjct: 132 LSKLNPIEGFKKIFSLKAIVELAKSFIKIGLVGYIVFQYAQGQLETIFNTMAMDMDGIIQ 191
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + I + + L D + +++ LKM+KQE K+E KQS GNP IK++
Sbjct: 192 VLIYILVNIGIRAGVVLLVLAGFDYLYQKYEYDKNLKMTKQETKEEYKQSEGNPQIKSKI 251
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +A +IITNPTH+A+A++Y + AP ++AKGQ+++A+ ++K+
Sbjct: 252 KEKQRQMSTKRMMQEVPKADVIITNPTHFAIAIQYNPDDFQAPRVIAKGQDILAQSIKKV 311
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E+++PI E LARSL+ V I + IP Y+AVA+++ +Y
Sbjct: 312 GLENDVPIVENKPLARSLYDTVEIGAFIPTELYQAVAEILAYVYRI 357
>gi|313672722|ref|YP_004050833.1| flagellar biosynthetic protein flhb [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939478|gb|ADR18670.1| flagellar biosynthetic protein FlhB [Calditerrivibrio nitroreducens
DSM 19672]
Length = 353
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 194/353 (54%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M +ND+ +TE + ++ + A+ EGN P SRE S + L ++ L F+ + +
Sbjct: 1 MPDNDSD--RTEEATPRRKQKAIEEGNVPRSRELSTGITFLIAVLILYFYIPSMVEEFKT 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D + R + LL + S +++ +P L + + I + ++Q V +
Sbjct: 59 DFIRYFSMYNYRI--NKESAYLLLIEVIKSMAKVTLPLLFVLVFVAILANIVQFGVVFSS 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + R++ G R++S +L +KS +KI L+G + + T+L A+
Sbjct: 117 KVLELKWDRLNPISGFGRLFSKKSLFELLKSILKISLIGFAAFLIIKSKIPTILTLADAD 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++ + +V + + I + ++D + Q+Y LKM+KQE+K+E KQ G+P
Sbjct: 177 AVSSIHFLGKLIYEVSFKLAIIIMVIALIDFLYQRWQYYEDLKMTKQEVKEEFKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ AP +VAKGQ LIA
Sbjct: 237 LIKQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDMAKDRAPKVVAKGQRLIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA ++N+ I E+P LAR+L+ V I IP YKAVA+++ +Y K
Sbjct: 297 LKIREIASKNNVLIHEDPPLARTLYSSVEIGEEIPENLYKAVAEILAMVYRLK 349
>gi|308068671|ref|YP_003870276.1| flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
gi|305857950|gb|ADM69738.1| Flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
Length = 370
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +DA +G S E +L L+ F +
Sbjct: 21 SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + + ++ + ++ P + ++ GI + +Q +L + P
Sbjct: 81 VNRLSMEV-TPNTTMLMMGEYGVQILIMLAPIFIGAIVIGIVANYMQIGFLLTGEGITPK 139
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + +L
Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKTDLPKLAEMSGDQMLS 199
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ + I + + L VLD + ++ LKMSKQ+IKDE K+ G+P+IK +
Sbjct: 200 FTASLTMELGLKIGVVLFVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A ++++I
Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++ + E LAR+LF++ I AIP ++AVA+++ +Y K
Sbjct: 320 AKQNGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366
>gi|121586826|ref|ZP_01676608.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
gi|153803039|ref|ZP_01957625.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
gi|153825586|ref|ZP_01978253.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
gi|229522073|ref|ZP_04411490.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
gi|254226357|ref|ZP_04919946.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
gi|121548993|gb|EAX59032.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
gi|124121437|gb|EAY40180.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
gi|125621107|gb|EAZ49452.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
gi|149740737|gb|EDM54836.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
gi|229340998|gb|EEO06003.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
Length = 376
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|308173601|ref|YP_003920306.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
gi|307606465|emb|CBI42836.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens DSM 7]
gi|328553467|gb|AEB23959.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
TA208]
Length = 359
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ +L + S++ L S ++ P +L+ ++ GI S +Q + + +KP
Sbjct: 72 KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L
Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356
>gi|320116065|ref|YP_004186224.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|319929156|gb|ADV79841.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 363
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + K+ +DA +G SRE + I+A + + P + + + LL
Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A +++P +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 314 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361
>gi|222084854|ref|YP_002543383.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
gi|221722302|gb|ACM25458.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
Length = 358
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 159/350 (45%), Positives = 237/350 (67%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTE P+ KK+ D + +GN P SREA++F+S+LA +IY+ FF + +
Sbjct: 1 MADED-KDSKTEKPTEKKLRDTMEKGNVPHSREATIFASMLATVIYVTFFLPERMGRMGE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L Q KLE + L T + LV+P ++LF +FGIGS + Q +P L
Sbjct: 60 VLRDLFEKPDQWKLETGPDALSLFTRIGWEVGNLVLPAIVLFFIFGIGSSMFQNLPTPVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R+S G RI+S + LV F KS KI++V I+ L +F +D ++++
Sbjct: 120 DRIQPKFSRISPVSGWNRIFSTSGLVEFGKSLAKIVVVSIIMFFVLRGQFFHAIDSLASD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +I V+++L+++LL A + + D+ WS H W+ +LKM+KQEIKDE KQS G+P
Sbjct: 180 PQTIFVRLSTIVQRILMIVLLATAVVGIADVLWSRHHWFDQLKMTKQEIKDEFKQSQGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 240 IVKSRQRSVARDRARRRMIKQVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA + IP+FE+P LARS+F QV ++S IP VFYKAVA+LI++IY
Sbjct: 300 LKIREIAEANGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRIY 349
>gi|154686055|ref|YP_001421216.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
FZB42]
gi|154351906|gb|ABS73985.1| FlhB [Bacillus amyloliquefaciens FZB42]
Length = 359
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 106/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L S + L S ++ P +L+ ++ G+ S +Q + + +KP
Sbjct: 72 KSISLHL-SASAVHELFVDTVKDISLILAPIMLVALVAGVVSNYMQVGFLFSAEVLKPDL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L
Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356
>gi|284007183|emb|CBA72471.1| flagellar biosynthesis protein FlhB [Arsenophonus nasoniae]
Length = 383
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 169/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K E P+++K E A EG SRE S F ++A + L + Y
Sbjct: 1 MAEE-SDLEKNEEPTARKKEKAKEEGQVVRSRELSSFFMLIAG-VSLFWICGHSCYQKLH 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + L + + L+ ++P + ++ + +N
Sbjct: 59 ALFSQTFYFDKYILYNSQLLPNLVFESVKIGLNALLPIIAGLVLIAFAAPSFFGGIHINF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +K+++ G+KR++SIN L K+ +K++LV IT+ L N ++
Sbjct: 119 KSIKFDWKKLNPITGLKRLFSINALAELFKALLKVMLVSIGITLFLWVNLPHFFHLVTEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L A + + + + L D+ + KL+M++QEIKDE KQ G+P
Sbjct: 179 RHLALSQATQLMIFAAYIAIFMLIPLVGFDLIYQLRSHLKKLRMTRQEIKDEFKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R R +MM +A +IITNPTHYA+AL+Y AP ++ KG LIA
Sbjct: 239 HIKARIRQQQREISRRRMMADVPKADVIITNPTHYAVALQYDNQAMQAPKVLVKGAGLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y +
Sbjct: 299 LNIKQLGEENRIPVLEAPPLARALYRHSKVGGHIPATLYAAVAEVLAWVYQLR 351
>gi|167571643|ref|ZP_02364517.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
C6786]
Length = 400
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D ++ LSL + P L L + + + + +++
Sbjct: 60 MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I ++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351
>gi|27380920|ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
110]
gi|27354086|dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
Length = 359
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 193/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ P+++TE P+ K++++AL G+ S+E + + I + + F + +
Sbjct: 1 MAEDNDPESQTEDPTQKRLDEALERGDVAKSQEINTWFMIAGGTLVVSTFSGSVGSGLVT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ LLA++ K D ++ LL + + + LL+ ++ + ++Q V +
Sbjct: 61 PMRNLLANSWMIK-TDGRALLALLQQIEFAVLAAIGVPLLMLVLAAVAGNMLQHRLVWSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F ++S G KRI+ NF+K K+I++G ++ L M + +
Sbjct: 120 ESLKPKFSKLSPAAGFKRIFGKQAAANFLKGLGKLIVLGVVMGTILWPERHRMEAMVRLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++L +L ++ +A + + D + Y W+ + KMS QEIK+E KQS G+P
Sbjct: 180 PAAMLGATTSLTIHLLGAVVAALAIIAIGDYFFQYRSWFQRQKMSLQEIKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + + R + +MM A +A++IITNPTH+++AL Y + AP+ VAKG + +A
Sbjct: 240 HIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSYERG-MQAPICVAKGVDNLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I + K
Sbjct: 299 FKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAEVIGYVMRLK 351
>gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
BKT015925]
gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
BKT015925]
Length = 594
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 101/347 (29%), Positives = 183/347 (52%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + K+ +A +G P S+E S +L I LL S D+
Sbjct: 246 SDDKTEEATPHKLSEARKKGQVPKSKEVSSAIILLTSTIILLTLGEYVANSFKKDIIEFF 305
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L ++S ++ ++ + + +P ++ M+ GIG+ L+Q + + +KP
Sbjct: 306 TNYLNIEL-NVSSLISIIVTILWRFMIVFLPVVVPLMVMGIGANLLQTGYINSKEPLKPQ 364
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G K+++S+ ++ +K I ++G + L N+ +L + I+
Sbjct: 365 LSKINPISGFKKMFSMRTVMELLKDIAVITIIGFVGYGFLKSNFRKVLSMTTLRFPVIIT 424
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + L + + + D + Q+ +KMSKQE+K+E KQ G+P +K +
Sbjct: 425 SFLKLTTNIFFRVSLVMIAIALTDFIYQKFQFKRDMKMSKQEVKEEFKQMEGDPQVKGKI 484
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ A+++ITNPTH A+AL+Y E++AP+LVAKG + IA K+++I
Sbjct: 485 KQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGEDNAPMLVAKGSDYIAIKIKQI 544
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+++PI E LAR +FK+V I + IP Y+AVA+++ +Y K
Sbjct: 545 AKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 591
>gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum D str. 1873]
gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum D str. 1873]
Length = 610
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 180/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + K+ +A +G P S+E + +L I LL S D+
Sbjct: 262 SDDKTEEATPHKLSEARKKGQVPKSKEVNSAIILLTSTIILLTLGEYVANSFKKDIIEFF 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +L S ++ ++ + + +P ++ M+ GIG+ L+Q + + +KP
Sbjct: 322 TNYLNIELNS-SSLISIIVTVLWRFMIVFLPVVVPLMIMGIGANLLQTGYINSKEPLKPQ 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G K+++S+ ++ +K I ++G L N+ +L + I+
Sbjct: 381 LSKINPISGFKKMFSMRTVMELLKDIAVITIIGFAGYGFLKSNFKKVLSMTNLRFPVIIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + L + + + D + Q+ ++MSKQE+K+E KQ G+P IK +
Sbjct: 441 SFLKLTTNIFFRVSLIMFAIALTDFIYQKFQFKKDMRMSKQEVKEEFKQMEGDPQIKGKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ A+++ITNPTH A+AL+Y +++AP+LVAKG + IA K+++I
Sbjct: 501 KQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGQDNAPMLVAKGSDYIAIKIKQI 560
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+++PI E LAR +FK+V I + IP Y+AVA+++ +Y K
Sbjct: 561 AKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 607
>gi|119503678|ref|ZP_01625761.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
HTCC2080]
gi|119460740|gb|EAW41832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
HTCC2080]
Length = 384
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E +TE P++K+++ A +G SRE + +L C + L + +VT
Sbjct: 1 MAEEQTGQERTEEPTAKRLQQAREKGQVARSRELNTLLMLLPCAVALWLTGEFAMDAVTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + ++ S + L +S +++P L L + + + + +L
Sbjct: 61 LFTGAL-TPPSEAMKVTSEVAPFLGATLMSGLEMIVPFLALTVFVALLGPSVMGGLIFSL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G RI+S +L+ +KS +K LV + + L ++ IS
Sbjct: 120 KSMSPGLDKIDPIKGFGRIFSRKSLLELVKSLLKFFLVSGVAVLVLLSFEREVMGLISLP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + LI + + + +D+ + KL+M+KQE+KDE+K++ GNP
Sbjct: 180 VGEGIAQAGRMIMLTLIFLSASLILVVAIDVPFQLWDHTRKLRMTKQEVKDEMKETDGNP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R +M+ A ++ITNPTH+++AL+Y Q N AP ++AKG + +A
Sbjct: 240 EMKGKIRQKQREIADRRMLADVPTADVVITNPTHFSVALKYDQEGNTAPRVLAKGADHMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA H+I I+EEP LAR+LF IP + AVA+++ ++H +
Sbjct: 300 MQIRHIARAHDIVIYEEPPLARALFASTEAGDEIPGNLFLAVARVLAYVFHLR 352
>gi|328911742|gb|AEB63338.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens LL3]
Length = 360
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 13 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ +L + S++ L S ++ P +L+ ++ GI S +Q + + +KP
Sbjct: 73 KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L
Sbjct: 132 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 192 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 252 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 312 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 357
>gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
Marseille]
gi|151280348|gb|ABR88758.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
Marseille]
Length = 402
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ KTE S +K+E A +G+ P SRE + + +L + + L
Sbjct: 15 EESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGAGAAFWILGGRMVGELNKMLA 74
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + D+ ++ + P L+ ++ + S + + + +
Sbjct: 75 AGL-SFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWLFSGKAL 133
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P+F R++ +G+ + S V K+ K IL+G I + + + ++ S
Sbjct: 134 QPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVMALSVEPLKS 193
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
H + I I + + +D + Q KL MS+Q+++ E K+S GNP IK
Sbjct: 194 GTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKESEGNPEIK 253
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A K+
Sbjct: 254 AKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKGADEVAAKI 313
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ +
Sbjct: 314 RELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 363
>gi|297582018|ref|ZP_06943937.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
gi|297533713|gb|EFH72555.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
Length = 376
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE + ++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYNTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|304438443|ref|ZP_07398383.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368526|gb|EFM22211.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 374
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 179/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK DA +G S+E + +L L + S+ S +
Sbjct: 25 GGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFTLKLLWDSIYLSIASYTTYVF 84
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ Q D +I+ + + + ++ P + M+ G+ Q N ++
Sbjct: 85 TNLNQSV--DTENIIHIFIGIIVVLAKTAFPVMFAIMLIGLAINFFQVGLTFNTESIEFK 142
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G RI+S +LV KSF KI+++G + + E M F+ + + L
Sbjct: 143 LDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSLA 202
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ +++ I + ++D G+ Q LKM+KQE+KDE+KQS G+P IK +
Sbjct: 203 LVAEIIFQMAFIVIGVIMIMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGKI 262
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +I+TNPTHYA+AL Y Q AP++VAKGQ+L+A+++++I
Sbjct: 263 RQKQRQMAMARMMKEVPKADVIVTNPTHYAIALSYQQG-MSAPLVVAKGQDLVAQRIKEI 321
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +PI E LAR+++ V I AIP Y+AVA+++ +Y K
Sbjct: 322 AREARVPIIENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368
>gi|300113616|ref|YP_003760191.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
gi|299539553|gb|ADJ27870.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
Length = 377
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + +TE P++K+ EDA +G P SRE S +L+ + L+ + +
Sbjct: 1 MADS-SAQERTEQPTAKRQEDARKKGQVPRSRELSTTVLLLSSALGLVLVGESLLQGLAD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ + ++ A +++ P L L ++ + + L+ ++
Sbjct: 60 LMRQGL-QLERAQIFEPKAVILQFQWGVGEAVKIITPFLALTLIAALAAPLLMGGWSVSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +++++ +G+KRI+ + +K+ +K +L+ + + ++
Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVACLLFWLFSSDLMALGRQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + L+ + +A + V+D + +LKM++QE+K+E K++ GNP
Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQSWNHIRQLKMTRQEVKEEHKETDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM A +A +++ NPTHYA+AL Y Q + AP +VAKG + +A
Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R +A +N+P+ P+L+R+++ ++ IP Y+AVAQ++ + +
Sbjct: 299 LKIRTVAAGNNVPVLSAPALSRAIYHSTELDQEIPAGLYRAVAQVLAYVLQLR 351
>gi|325981881|ref|YP_004294283.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
gi|325531400|gb|ADZ26121.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
Length = 379
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 188/353 (53%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +TE + +++E A EG S+E + F+ ++A + +L S + +
Sbjct: 1 MSEE-SDLERTEEATPRRLEKAREEGQVVRSQELTSFTLLMAAAVGILMLGSALMEKLVK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + ++ ++ + P L L ++ + ++ +++
Sbjct: 60 IMQSGM-QLDRELAFQSELMINRFYEFAIEGLISMAPLLFLLLVVAFFAPMLLSGWLVSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P FKR+ +G RI+S+ +L+ +K+ +K IL+G + + + N +++ ++ +
Sbjct: 119 KAVIPDFKRIDPIKGFGRIFSMRSLIELVKAILKTILIGGVAALVIWHNKDSVMALLTVS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++I+ + + +D+ + + +L+M+K++++ E K+S G+P
Sbjct: 179 IDLGISRTGDFLAMSFLLIISAMIIIVAVDVPFQIWEHAKQLRMTKEDVRKEYKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R R +MM +A +I+TNPTHYA+ALRY Q+ AP +VAKG +L+A
Sbjct: 239 YVKARIRNLQREAARRRMMSEIPKADVIVTNPTHYAVALRY-QSNMRAPKVVAKGVHLLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA EH IPI E P LAR+L+ + S IP Y AVA+++ ++ +
Sbjct: 298 ARIREIATEHRIPILEAPPLARALYHHTELESEIPEKLYTAVAEVLAYVFQLR 350
>gi|332994108|gb|AEF04163.1| flagellar biosynthesis protein [Alteromonas sp. SN2]
Length = 376
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D+ KTE P+ KK+ED +G SRE S ++ LF SV
Sbjct: 1 MADSDSS-EKTEDPTGKKLEDTRKKGQIARSRELSTTLVLVVSAFMFLFVGGWIAESVFK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D +H+ + S V+ + + M+ GI +
Sbjct: 60 LTQRMFV-LSRDETYDTTHMFGAWGEAISTVSVPVLLYMTVAMLAGIYGSIALGGYNFTW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
K ++S G KR++ +N LV +KS K++++ + +L L
Sbjct: 119 EGAKFKGSKMSPLSGFKRMFGMNGLVELIKSIAKVVVIVGMALGALLFFEDEALHLDLEL 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA ++ IM++ + + ++D+ + ++ ++KM+KQE+KDE K S G+P
Sbjct: 179 YPGNIFHALDMLKWAFIMLVCGMIPIALIDVPYQIYKHNKEIKMTKQEVKDERKNSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + + +MM+ +A +++TNPTHY++A++Y + N APV+VAKG + +A
Sbjct: 239 LVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHYSVAIKYDDSGNRAPVVVAKGTDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+RKIA +++P+ P LAR+++ I+ +P + AVAQ++ +Y K
Sbjct: 299 MHIRKIATANDVPLIPSPMLARAVYYSTEIDGEVPNALFMAVAQVLAHVYQLK 351
>gi|310764894|gb|ADP09844.1| Flagellar biosynthetic protein FlhB [Erwinia sp. Ejp617]
Length = 381
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS ++ + KTEAP+ +I A EG P S+E + +L +L + S+ S
Sbjct: 1 MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + + D + ++ + L A ++P + ++ + + + +L+
Sbjct: 60 LLHNALI-FDRLLVLDPAQMLQRSSSLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P K+++ GIKR++S +K+ +K++L + L N + I
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATIGGGLYLLLNKEKFIRLIFEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P
Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y +
Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351
>gi|209964223|ref|YP_002297138.1| flagellar biosynthesis protein FlhB [Rhodospirillum centenum SW]
gi|209957689|gb|ACI98325.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
Length = 359
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 196/354 (55%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ D+KTE P+ KK+ DA +G S E + + L+ +L +
Sbjct: 1 MAEDQDQDSKTEEPTDKKLSDAREKGQVAKSMEVGNLFILASGLVMVLLLLPWSGRILWD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L + + +LT L+L + + P L+L ++ + + +IQ + +
Sbjct: 61 AMMPFVERP-HAILMAPAALGDVLTDLTLDIAFALAPTLVLLLLAALAAPIIQVGLMFSA 119
Query: 121 NH-VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ K +V+ G+K S+ NLV F+KS K++LVG ++++ L + ++ F++
Sbjct: 120 ENVFKFDLNKVNPLTGLKNKVSLKNLVEFLKSLGKLVLVGIVVSVLLLPLWTSIEHFLAL 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S++ K++ +++ + + D + +Q+ +++M+KQE+KDE KQ+ G+
Sbjct: 180 PLPSVIVETRHEAAKLIAAVVIVLGAIAGADYAFQRYQFMQQMRMTKQEVKDEYKQTEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P+IK++ + + R R++MM A A +++TNPTH+A+AL+Y + AP +VAKG +LI
Sbjct: 240 PLIKSKIRQLRMQRSRNRMMAAVPSADVVVTNPTHFAVALKYDASAMSAPRVVAKGADLI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
AK++R++A E +P+ P LAR+LF I+ IP YKAVAQ+I ++ K
Sbjct: 300 AKRIRELAEEAGVPVISNPPLARALFATAEIDEEIPAEHYKAVAQVISYVFKLK 353
>gi|311068160|ref|YP_003973083.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
gi|310868677|gb|ADP32152.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
Length = 360
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 106/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + + + S L
Sbjct: 12 GEKTEKATPKKRQDTRKKGQVAKSADVNTAVSLLVVFLSFIAIGPYMRDRLLSFLETFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ KL +S++ L L ++ P +L+ ++ G+ S +Q + + +KP
Sbjct: 72 ESLTMKL-SMSNVHTLFIDLLKDTGIILAPIMLVALIAGVISNYMQVGILFSAEVIKPDL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L
Sbjct: 131 KKLSPLKGFKRIYSMRAIVELLKSILKIAVVGFAAFLVLWTHYGEILRLPLLTPEEVLSF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALMVLAGLDYLYQKFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG + +A K+++IA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEHKMDAPYIIAKGVDHLALKIKQIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKVIAEILAYVYKTK 356
>gi|119775419|ref|YP_928159.1| flagellar biosynthesis protein FlhB [Shewanella amazonensis SB2B]
gi|119767919|gb|ABM00490.1| flagellar biosynthetic protein FlhB [Shewanella amazonensis SB2B]
Length = 377
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 177/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END +TE P+ +++E A +G S+E + +LA + L ++ +
Sbjct: 1 MAENDTSQERTEEPTGRRLEQAREKGQVARSKELGTAAVLLAAAVGFLMLGPSLGKAMHN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + ++ ++ D + ++ + ++ V+ +L+ ++ + +
Sbjct: 61 VMTMTMVQ-SREQVFDTNSMLNIWIPIAKELGLPVLGLVLVLAALAFAGNIVLGGIIFSS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N V P ++S G KR++ + L+ K K +V L+ + ++ + +
Sbjct: 120 NGVLPKASKMSPLAGFKRMFGLQALMELGKGLAKFSVVAVAAYFLLSFYFPEIIQISAEH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++HA + + +++ + + V+D+ + +LKM+KQE+KDE K + G P
Sbjct: 180 LPSNVFHALDLLTWMFLLLCSSMLIIAVIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM +A +I+ NP H+A+AL+Y + AP ++AKG + +A
Sbjct: 240 EVKGRIRQMQREIAMRRMMAEVPKADVIVVNPEHFAVALKYDAKRSPAPFVLAKGVDAVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+++ +N +P + AVAQ++ ++ +
Sbjct: 300 FKIREIAREYDIAIVSAPPLARAIYHTTKLNQQVPEGLFTAVAQVLAYVFQLR 352
>gi|240145485|ref|ZP_04744086.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
gi|257202300|gb|EEV00585.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
Length = 379
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 90/357 (25%), Positives = 169/357 (47%), Gaps = 5/357 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE + KK+ +A +G S+E + ++ + L F S
Sbjct: 17 AKDGPGGEKTEPATEKKLREAREDGKVAKSKELTAAFDLIVLFLVLKVFISLIGNGFLEV 76
Query: 62 LHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ + I L ++ + ++ P + + ++Q
Sbjct: 77 FYYVYKLMPDFVSVNAMESSTKEITSFLHNVYIEMFKMAAPFFVFGVAVTALVSILQVGW 136
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
+ +KP + + G KRI+S ++L +KS +KI L+ + S+ +
Sbjct: 137 KVTAKPLKPKGDKFNPINGFKRIFSKDSLFELLKSILKIGLIIYVAYTSIKGEANDIFIL 196
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ + + I L + + D + H++ +KM+KQE+KDE K +
Sbjct: 197 YDIPLNQAVVLCGNVIINAGFKISLVYLVVGIADFVYQKHRFNEDMKMTKQELKDEYKNT 256
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
GNP IK RQ+ R + +MM+ +A ++ITNPTH A+A++Y + AP+++AKG+
Sbjct: 257 EGNPEIKGRQRQRMREASQRRMMQDVPKADVVITNPTHLAVAIKYDAEVSRAPIVIAKGE 316
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A+K+R+ A E++I I E LAR L+ V I + IPP Y+AVA+++ +Y+ +
Sbjct: 317 DYLAQKIREKAKENHIEIVENKPLARMLYANVDIGAEIPPELYQAVAEILAMVYNLR 373
>gi|85716547|ref|ZP_01047517.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
gi|85696548|gb|EAQ34436.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
Length = 359
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ K+++DAL G+ S+E + + +I + L F
Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNAWFAIAGATLVLSTFAGSIGDGFRM 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+A++ Q + + + A+ L +P LLL M + ++Q V +
Sbjct: 61 PLRNLIANSWQIRTDGPGLLALAEQIGYCLAAALGVPLLLLTMAA-VAGNVVQHRFVWSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++S+ G KRI+ + NF K K++ +G ++T L + + +
Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAVANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNALLGITKSLTLQLLGAVMVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA
Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+IP+ E LAR+L+ V I+ IP Y AVA++I + K
Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEIPVEHYHAVAEIIGYVMGLK 351
>gi|291484192|dbj|BAI85267.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. natto
BEST195]
Length = 360
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P
Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGIILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356
>gi|317133470|ref|YP_004092784.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
YUAN-3]
gi|315471449|gb|ADU28053.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
YUAN-3]
Length = 356
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 100/350 (28%), Positives = 187/350 (53%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ +KTE + K+ ED +G+ S + + ++L L I S++ +
Sbjct: 3 EASAGDKTEKATPKRREDERKKGHVVQSPDVTSAVAMLGTFAVLRVMGPSMIKSLSDGMR 62
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+LA+ T + + +T + +P +L+ + + L Q +++L+ +
Sbjct: 63 GMLANLTS-AVSGYEDMRARMTAALSVLIGVAVPVMLVAFAATVATTLAQTRLLVSLDQL 121
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP R++ EGIKR++S+ +LV KS +K++LVG ++ + T+L + +
Sbjct: 122 KPDLSRLNPLEGIKRLFSVRSLVELGKSILKVVLVGAVVYFEIQPQMHTILLLYNMSLAQ 181
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + I + + L +D + + Q+ ++M+K+EIK+E KQ GNP IK
Sbjct: 182 SFSWVAGILADIGIKVAGVMLLLGAIDYFYQWFQYEKDIRMTKEEIKEEYKQMEGNPEIK 241
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ K++ R R +MM+ +A +++ NPTH+A+AL+Y + APV VAKG+N +A ++
Sbjct: 242 GKIKNLQRQMARRRMMQDVPKADVVLRNPTHFAVALKYEHGKQRAPVCVAKGRNAVALRI 301
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA E+++ I E+P L R+L++ V + IP FYKAVA+++ IY +
Sbjct: 302 VEIAEENHVYIREDPPLTRALYQAVEVGGQIPAEFYKAVAEVLAYIYKLR 351
>gi|148256775|ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1]
gi|146408948|gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1]
Length = 359
Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 194/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D ++KTE P+ K+++ AL G+ S+E + + I A + + F +V
Sbjct: 1 MADEDDSEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMSTFSGSIGTAVLV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+A++ D + ++ L LS + + +L+ M+ I ++Q V +
Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP+F ++S G KR++ NF K K++L+GT++ + L + + +
Sbjct: 120 EPLKPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+L + ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VSELLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAYERG-MSAPVCVAKGVDNIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H+IPI E LAR+L+ V I++ IP Y AVA++I + +
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEIISYVMGLR 351
>gi|302343745|ref|YP_003808274.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
2075]
gi|301640358|gb|ADK85680.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
2075]
Length = 364
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++N KTE P+ ++ A +G S+E + A L+ L F +
Sbjct: 1 MADN-TAQEKTEKPTPRRRSKAREKGQVAKSQELGSIGVLFAGLMCLYAFGGFVYDQSAT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L+ A + + ++ + L L R + P +L ++ G+ + Q +L
Sbjct: 60 MMTHILSRAAETPV-SLAQVHNLSIDLMGHFLRTLAPFMLAVVLAGVAVNVAQTGFMLAT 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P K+++ EG+K+ S+ LV +K+ KI +VG + + L + +
Sbjct: 119 SRLRPDLKKINPLEGLKKFVSMRMLVEAIKNTGKICVVGLVAYLVLADELPNFPNIGKLG 178
Query: 181 PHSIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + + ++ + L + L +LD + +Q+ LKMSKQEIKDE KQ+ G+
Sbjct: 179 GLTAMLIYIADVCLRIFLWSLAAMFILAILDYAYQKYQFEKGLKMSKQEIKDEFKQTEGD 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K+R + + R R +MM A +A ++ITNPTH A+A+ Y + DAP +VAKGQN I
Sbjct: 239 PHVKSRIRQLQRERAMKRMMAAVPQADVVITNPTHLAVAIFYQAGQMDAPEVVAKGQNKI 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A++++ +A E+N+PI E+ LA++L+K V + IP + AVA ++ +Y +K
Sbjct: 299 AERIKALAQENNVPIIEDKPLAQALYKSVEVGQRIPFELFGAVAAILAHVYREK 352
>gi|149194192|ref|ZP_01871290.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
TB-2]
gi|149136145|gb|EDM24623.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
TB-2]
Length = 351
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK+E+A EGN S E S F +L I +LF+ + +
Sbjct: 1 MA---DDLEKTEEPTPKKLEEAKKEGNIAKSMEVSGFVVLLVGSIIILFYLKYVTFYLEE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++I L+ + L+ P + ++ GI ++Q + +
Sbjct: 58 YFRYFYSYIGVELTKNI--FFNLIIKSTYYFFILIAPIFIALILAGIIGNVMQFGFLFTI 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++++ +G+KR++S+ LV +K+ +K + + + N
Sbjct: 116 KPILPKLEKINPIKGLKRLFSVKTLVEGLKTTLKTFIAFLVGFTLFYNFLQEIPRLELMN 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L ++D + + + L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEDKAVILIFSLLGVFFIFAIIDFTYQKYTYKKSLRMSKQEIKDEYKQTEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP +VAKG + +A
Sbjct: 236 EVKAKIRQLQREMAKKRMMAEVPKADVVITNPTHYAVAIRYDKTKDEAPRVVAKGVDNLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA E + I E P LAR L+K V + IP +KAVA+++ +Y K
Sbjct: 296 IKIKEIAREAGVMIVENPPLARELYKSVEVGEIIPQKLFKAVAEVLAYVYRAK 348
>gi|167564493|ref|ZP_02357409.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
EO147]
Length = 400
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TEA + K+ E A EG SRE + F+ + A P + +
Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH S + D ++ LSL + P L L + + + + +++
Sbjct: 60 MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F+R++ G+ RI+SI + S K ++VG I ++ + +L +
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K
Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQMK 351
>gi|254470232|ref|ZP_05083636.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
gi|211960543|gb|EEA95739.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
Length = 358
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 187/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ KTE P+ K+++DA +G+ P S+E S + S++ + + F + SV++
Sbjct: 1 MAEDTDDSEKTEDPTQKRLDDAFEKGDIPKSQEVSSWFSLVGTALVISFLAPTMVSSVST 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A A + D +VFLL +V LL M + ++Q P+
Sbjct: 61 ILKGFFAHADTIAV-DPGALVFLLEITGPEILGVVALPLLTLMALAVVGNVVQHKPLWTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++S G+KR++S ++L NF+K VKII V + + L + +
Sbjct: 120 ERLKPKLNKISPLSGMKRLFSKDSLANFLKGLVKIIAVAAAVFLVLWPERDRLDTVVFRE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+L V+ IL + + D+ W +W+ K KM++QE+K+E KQS G+P
Sbjct: 180 TGLVLEEVRELAIMVIGAILALMTVVAGADLVWQRKKWFEKQKMTQQEVKEEYKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R R++MM + AT++ITNPTHYA+AL Y + AP VA G + +A
Sbjct: 240 KIKAKIRELRLQRSRNRMMASVPDATVVITNPTHYAVALSYEEG-MGAPQCVALGVDDLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E ++PI E P LAR+L+ + +N +P Y AVA++I + +
Sbjct: 299 LRIREVAKESDVPIVENPPLARALYASIELNDYVPEEHYAAVAKVIGYVMQLR 351
>gi|75675330|ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi
Nb-255]
gi|74420200|gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi
Nb-255]
Length = 359
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ K+++DAL G+ S+E + + I + L F
Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLSTFSGSIGSGFEL 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+A++ Q + + + A+ L +P LLL MM + +IQ V +
Sbjct: 61 PLRNLIANSWQIRTDGPGLLALAEQIGYRLAAALGVPLLLL-MMAAVAGNVIQHRFVWSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++S+ G KRI+ NF K K++ +G ++T L + + +
Sbjct: 120 ETLKPKLSKISMVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNALLGITKSLTLQLLGAVIVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA
Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+IP+ E LAR+L+ V I+ +P Y AVA++I + K
Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAEIIGYVMGLK 351
>gi|56460295|ref|YP_155576.1| flagellar biosynthesis protein FlhB [Idiomarina loihiensis L2TR]
gi|56179305|gb|AAV82027.1| Flagellar biosynthesis proten FlhB [Idiomarina loihiensis L2TR]
Length = 375
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 172/354 (48%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D +TE P+ ++ + A ++G S+E +++ + F+F +Y
Sbjct: 1 MAETD--QERTEDPTERRKQQARDKGQIARSKEMGTGFVLVSAAVSF-FWFGGALYQGVR 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ ++ + ++ D S + ++ ++F +
Sbjct: 58 NVFEIMFTLDRQHAFDTSKMYEAFAIAFGEILWPILTIFAFIVVFTFLGNSWLGGINFSA 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G KR++ + LV +K+ K ++V L + +L
Sbjct: 118 QAMAPKFNRMNPLNGFKRMFGVQALVELIKAIAKFMVVAVSAYFLLKWKFVDILQMSMGQ 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+++ +A T+ + +++ L I + V+D + + LKMSKQE+KDE K + G+P
Sbjct: 178 MPTMIENALDTLLWMFLLLCLSIFLIVVIDAPFQVWKHNKDLKMSKQEVKDEHKDTEGSP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + +MM+ +A +++TNPTHYA+AL+Y APVL+AKG + A
Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHYAVALKYDDGGVQAPVLLAKGTDETA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
K+R+IA E+ IP+ P LARS++ + IP + AVAQ++ +Y ++
Sbjct: 298 AKIREIALEYEIPLVASPGLARSIYHTTELEKEIPKGLFVAVAQILAYVYQLRM 351
>gi|226313051|ref|YP_002772945.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
100599]
gi|226095999|dbj|BAH44441.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
100599]
Length = 365
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 101/345 (29%), Positives = 179/345 (51%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +DA +G S++ S S+ A L+ S + + + L
Sbjct: 17 GEKTEKATPKKKQDARKKGQVAKSQDLSPALSLTAFFFLLMMLGSTMLGTFQDLMRESLI 76
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ T +L + ++ ++ L A ++V P L L + +Q + ++
Sbjct: 77 TYTTWQLNE-ENLKVMVMQLVFEAIKIVGPILGLSFLVAFAVNYMQVGWHFSTEPLQMKL 135
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRI+S+ +LV +KS +KI + + L ++ + ++L
Sbjct: 136 EKIDPIKGAKRIFSLRSLVELLKSLLKISAGIYVAYVILWNAKEQVVQLSLLSLGAVLSF 195
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V K+ I + L + L VLD + ++ L+MSKQ++KDE KQ+ G+P+IK + +
Sbjct: 196 TAEEVTKLGIYLGLLLFILAVLDYAYQRYEHEKNLRMSKQDLKDEHKQAEGDPLIKGKIR 255
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
RS +MM+ +A +IITNPTH+A+A+RY + AP ++AKGQ+ +A K+R++A
Sbjct: 256 ERQRSMAIRRMMQELPKADVIITNPTHFAVAVRYDASAMSAPTVIAKGQDYLALKIREVA 315
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+H I E LAR+L+ QV + IP +KAVA+++ +Y
Sbjct: 316 KKHRIVTMENKPLARALYSQVEVGQQIPEEMFKAVAEVLAYVYKL 360
>gi|269792925|ref|YP_003317829.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100560|gb|ACZ19547.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 366
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 175/346 (50%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + +K A EG S++ + I + L+ +L F + ++
Sbjct: 15 EEKTEPATPRKRRKAREEGQVTKSQDLTAAVVIASGLLGVLVFGGFFFRRLQLLFAQVMG 74
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ ++ + S + P L + +G Q ++ + P+
Sbjct: 75 YLKDPSMGGEEWLLLPFSRALGSYLLIWFPLGLACALAALGLMAYQVGLMITPKPLVPNL 134
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ G+K+++S + V +K +K +++ ++ +L ++ T+L I L
Sbjct: 135 NRMNPVSGMKKMFSGRSFVEMLKGVLKALILLLMLYGALRKDLLTLLGAIGQPFGEGLGL 194
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ V + + + L + L + D + ++ ++MSKQEIK+E KQ G+P++K R +
Sbjct: 195 VMWRVWVLCMKMTLMLMVLGLFDYAYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRIR 254
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R R +MM +A ++ITNPTH A+AL Y + +APV++AKG+ LIA+++R+IA
Sbjct: 255 QRQRELARRRMMSDVPKADVVITNPTHVAVALSYDRKVAEAPVVLAKGKGLIAQRIREIA 314
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+ +P+ + P LAR+++ QV + IP YKAVA+++ +Y +
Sbjct: 315 RENRVPVVQNPPLARAIYAQVEVGEEIPESLYKAVAEVLAFVYRLR 360
>gi|289578415|ref|YP_003477042.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
Ab9]
gi|297544691|ref|YP_003676993.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528128|gb|ADD02480.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
Ab9]
gi|296842466|gb|ADH60982.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 363
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + K+ +DA +G SRE + I+A + L P + + + LL
Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLALNILAIPSLEKMMALTKYLLY 73
Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + ++ I L T++ A ++IP +LL + + S +Q V +
Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIIPIILLIFVVSLVSTYLQVGFVFTTEPLAF 133
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R++ EG KRI+S LV KS K++++ I+ L Y + + + IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+A + + I I + + L LD + + ++ LKMSK++IK+E K++ GNP IK
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYEVSLKMSKEDIKEEFKETEGNPQIKAE 253
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361
>gi|310767884|gb|ADP12834.1| Flagellar biosynthesis protein FlhB [Erwinia sp. Ejp617]
Length = 383
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + +
Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ L+ ++ L A V+P + ++ I + ++ VL+
Sbjct: 60 LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSAQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPIVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351
>gi|39936944|ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
CGA009]
gi|192292772|ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
TIE-1]
gi|39650801|emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas
palustris CGA009]
gi|192286521|gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
TIE-1]
Length = 357
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 192/353 (54%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D KTE P+ K+++DAL G+ S+E + + I + L F + +
Sbjct: 1 MSE--DSDEKTEEPTQKRLDDALKRGDVVKSQEVNTWFLIAGATLVLSSFHESIGTGILA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ + ++ D ++ L LS + + LL+ ++ I S +IQ V +
Sbjct: 59 PMRNLIEKSWMLRV-DGDGLIALAKSLSYATLAAIGIPLLMLVIVAIASNMIQHRLVFSA 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S EG KR++ + NF+K KI+ +G ++ L + + + +
Sbjct: 118 EALTPKFSKLSPLEGAKRLFGKQAMANFLKGLFKIVALGIVMVAVLYPEHDRLDALLKMD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L K+L ++ +A + V D + Y QW+ K KMS QEIK+E KQS G+P
Sbjct: 178 VSALLGVTVALTLKLLGAVVAMLAFVAVGDYFFQYRQWHEKQKMSLQEIKEEFKQSEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + +A
Sbjct: 238 HIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKYERG-MSAPICVAKGVDAVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A EH++PI E LAR+L+ V I+ IP Y+AVA++I + + K
Sbjct: 297 FKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349
>gi|254291356|ref|ZP_04962149.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
gi|150422686|gb|EDN14640.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
Length = 376
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE +S++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATSRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|327399034|ref|YP_004339903.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
gi|327181663|gb|AEA33844.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
Length = 353
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 187/347 (53%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
++KTE + K+ ++A EG S E + +LA +++ F S + L
Sbjct: 3 DEDKTEQATPKRRQEAREEGRVAKSVELNTAFLMLAAVVFFYFTASNFGEKIKDVLIYFF 62
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ ++ + L+ +S +++P ++ ++Q + ++
Sbjct: 63 TLASNFEI-TLDSFDILVKRISGFMFSILLPFFIVMATIAFLINVVQVGFYITPKAMEIK 121
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G K ++S+ + +KS +K ++G I+ I + +N + N ++
Sbjct: 122 FDKINPVNGFKNMFSLRSFGELVKSLLKASVMGYILWIFIQKNINSWSSLSKTNQTAVFL 181
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ V++ IL+FI + +LD + + + + M+KQE+KDE KQ G+P IK +
Sbjct: 182 VMIKSMFLVVVYILIFIIFMAILDYLFQKYTFEKSIMMTKQEVKDEYKQMEGDPKIKQKI 241
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+S+ R +MME +A ++ITNPTHYA+AL+Y AP +VAKG NLIAKK+++I
Sbjct: 242 RSMQMEMTRKRMMEEVKKADVVITNPTHYAVALKYDSATMAAPKVVAKGINLIAKKIKEI 301
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+++PI E+P LARSL+++V ++ IP Y+AVA+++ ++ K
Sbjct: 302 AKENDVPIVEKPELARSLYEKVKLDREIPEELYQAVAEILAYVFKLK 348
>gi|313896030|ref|ZP_07829584.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975455|gb|EFR40916.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
str. F0430]
Length = 374
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 103/347 (29%), Positives = 178/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK DA +G S+E + +L L + ++ S +
Sbjct: 25 GGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYVF 84
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ Q D +IV L + ++ +P +L M+ G+ Q N ++
Sbjct: 85 ANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEFK 142
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G RI+S +LV KSF KI+++G + + E M F+ + + L
Sbjct: 143 LDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSLA 202
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 203 LVAEIIFRMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGKI 262
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+L+A++++++
Sbjct: 263 RQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKEL 321
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K
Sbjct: 322 GREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368
>gi|310641562|ref|YP_003946320.1| flagellar biosynthetic protein flhb [Paenibacillus polymyxa SC2]
gi|309246512|gb|ADO56079.1| Flagellar biosynthetic protein FlhB [Paenibacillus polymyxa SC2]
Length = 370
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +DA +G S E +L L+ F +
Sbjct: 21 SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + + ++ + ++ P + ++ GI + +Q +L + P
Sbjct: 81 VNRLSMEV-TPNTTLLMMGEYGVQILIMLAPIFVGAIVIGIAANYMQIGFLLTGEGITPK 139
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + +L
Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKADLPKLAEMSGDQMLS 199
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ + I + + L +LD + ++ LKMSKQ+IKDE K+ G+P+IK +
Sbjct: 200 FTASLTMELGLKIGVVLFILAILDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A ++++I
Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + + E LAR+LF++ I AIP ++AVA+++ +Y K
Sbjct: 320 AKQSGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366
>gi|320529415|ref|ZP_08030503.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
gi|320138381|gb|EFW30275.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
Length = 374
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 103/347 (29%), Positives = 178/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK DA +G S+E + +L L + ++ S +
Sbjct: 25 GGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYVF 84
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ Q D +IV L + ++ +P +L M+ G+ Q N ++
Sbjct: 85 ANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEFK 142
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G RI+S +LV KSF KI+++G + + E M F+ + + L
Sbjct: 143 LDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSLA 202
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 203 LVAEIIFQMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGKI 262
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+L+A++++++
Sbjct: 263 RQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKEL 321
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K
Sbjct: 322 GREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368
>gi|188586038|ref|YP_001917583.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350725|gb|ACB84995.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 363
Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 2/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE P+ K ++ +G S E + ++A L F + +
Sbjct: 14 QEKTETPTPKHRRESRKKGQVAKSTELTSALLLMATFSTLYIVFPYSFDRFMNFAKQFWS 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + I LL + + + P +++ ++ G+ S L+Q +L + +KP
Sbjct: 74 NINTIN-YTMDEIHSLLITMMMEGAVFAAPVIIVAVLIGLISNLMQVGILLTGDPLKPKL 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R+ +G ++I+S +V KS K++++G I I + F I
Sbjct: 133 ERLDPIKGFQKIFSKRAVVELTKSLFKMVVIGIIAYILFNNHMEHFPYFYDMTVMQIAVE 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
++ + + + L++LD + + LKM+KQ++KDE KQ+ G+P ++++ K
Sbjct: 193 VGQLTWALIFRVGMALLFLSILDYVYQVWEHEQNLKMTKQQVKDEHKQTEGDPQVRSKMK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R + +MM A ++ITNP H A+AL+Y + + AP+++AKGQ +A+K+++IA
Sbjct: 253 EKQREISKKRMMSEVPEADVVITNPVHIAVALKYDEG-DTAPMVLAKGQGHVARKIKEIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+HN+ + E LARSL+ V I IP Y+AVA+++ +Y K
Sbjct: 312 EDHNVVVMENRQLARSLYFSVEIGDFIPEELYQAVAEVLAFVYRLK 357
>gi|297617157|ref|YP_003702316.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
DSM 12680]
gi|297144994|gb|ADI01751.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
DSM 12680]
Length = 366
Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 179/348 (51%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
KTE + ++ +++ +G S + + +L L F + +
Sbjct: 16 EGGEKTEKATPRRRQESRRKGQVFRSVDLNSAVILLVGFAVLHFTTPYMLTGIQGFFSRY 75
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ +L + V LL + L +++ P + ++ G+ L+Q V +
Sbjct: 76 LSDRALTQLTPATFHVMLLDAI-LLMAKISFPVIGAVLVAGLLVNLLQVGFVFAGEPLSI 134
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+RV+ EG KRI+S+ L+ +KS K++L G ++ L +N + F+ P S++
Sbjct: 135 KPERVNPVEGFKRIFSLRALIELVKSVAKVVLTGWVVYSVLKKNLYLFPRFVDMEPVSMV 194
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ ++ + I + + + +LD + + + L+MSK+E+K E KQ+ G+P I+++
Sbjct: 195 MSLGNIIFEMAMKIGVVLLVVGLLDYLYQWWEHEKSLRMSKEELKQEYKQTEGDPQIRSK 254
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
Q+ R +MM +A ++ITNPTH+A+AL+Y APV+ AKGQ+ +A ++R+
Sbjct: 255 QRQKQREMAMRRMMAEVPKADVVITNPTHFAVALKYEAEAMTAPVVTAKGQDFLALRIRE 314
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A EH + + E P LAR+++ I IP Y+AVA+++ +Y +K
Sbjct: 315 VAMEHQVALVENPFLARTIYYSTEIGDPIPETLYQAVAEVLAFVYRQK 362
>gi|16078701|ref|NP_389520.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309516|ref|ZP_03591363.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313840|ref|ZP_03595645.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318763|ref|ZP_03600057.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323035|ref|ZP_03604329.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321315405|ref|YP_004207692.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
gi|7404374|sp|P35538|FLHB_BACSU RecName: Full=Flagellar biosynthetic protein flhB
gi|2634010|emb|CAB13511.1| component of the flagellar export machinery [Bacillus subtilis
subsp. subtilis str. 168]
gi|320021679|gb|ADV96665.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
Length = 360
Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P
Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356
>gi|329904716|ref|ZP_08273917.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
IMCC9480]
gi|327547860|gb|EGF32618.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
IMCC9480]
Length = 379
Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE S ++I+ A G+ P SRE + +LA L + + + +
Sbjct: 1 MSDE-SDMEKTEPASQQRIDKARENGDVPRSRELATCLVLLAAGGGLYISGANMLRQLKA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + D S ++ L P + ++ + S L+ + +
Sbjct: 60 ALASGL-TFDRGQAFDFSLLLSRLGSHLGDLLLAFAPLAGILILVALASPLLIGGWLFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F R++L G+ +I S+N LV K+ K ++VG+I + + +L +
Sbjct: 119 QALAPNFGRMNLFSGLLKIVSLNALVELGKAVAKAVIVGSIAYLVMRSEIDEVLGLMVEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H + ++I++ + + +D + + K+ M++QE++ E K+S GNP
Sbjct: 179 AEAGSMHMAKLLFSTYMLIVMGLVLIAAVDAPYQMWSYAKKMMMTRQEVRQEAKESEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + ++ R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A
Sbjct: 239 EIKAKIRAQQREMARRRMMSEVPTADVVVTNPTHYAVALKYTDGKMGAPQVVAKGADAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A +N+P+ E P LAR+LFK V + AIP Y AVA+++ ++ K
Sbjct: 299 ARIRELAAANNVPLLEAPPLARALFKHVELGDAIPETLYTAVAEVLAYVFQLK 351
>gi|292669764|ref|ZP_06603190.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
gi|292648561|gb|EFF66533.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
Length = 374
Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats.
Identities = 101/347 (29%), Positives = 176/347 (50%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK DA +G S+E + +L L + S+ + +
Sbjct: 25 GGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFSLKLLWDSIYLSIATYTTYVF 84
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
++ Q D +I+ + + + ++ P +L M+ G+ Q + ++
Sbjct: 85 SNLNQ--TVDTENIIRIFIGIIIVLAKTAFPIMLFIMVIGLAINFFQVGLNFSAESIEFK 142
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G RI+S LV KSF KII++G + + E M F+ + + L
Sbjct: 143 LDKLNPINGFGRIFSKRALVELAKSFFKIIVIGFFLYRFIHEQILAMPQFMFFDLTTSLA 202
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ +++ I + D G+ Q LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 203 LVAEIIFQMAFIVIGVIMIMAFCDYGYQRWQTTQDLKMTKQEVKDEMKQTEGDPQIKGKI 262
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTHYA+AL Y Q AP +VAKGQ+L+A+++++I
Sbjct: 263 RQKQRQMAMARMMKEVPKADVIITNPTHYAVALSYEQG-MVAPTVVAKGQDLVAQRIKEI 321
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +PI E LAR+L+ V + A+P Y+AVA+++ +Y K
Sbjct: 322 GRDARVPIIENKPLARTLYAAVQVGDAVPHELYQAVAEVLAYVYRLK 368
>gi|302670739|ref|YP_003830699.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
B316]
gi|302395212|gb|ADL34117.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
B316]
Length = 383
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 97/357 (27%), Positives = 179/357 (50%), Gaps = 5/357 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+E+ K+E P+SKK++DA EG S+E + S+LA + L F + + +
Sbjct: 24 AEDANGAEKSEEPTSKKLDDARKEGQVAKSQEVATAFSLLAFFLILRFGYGFMGENFEAI 83
Query: 62 LHVLLASA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ + +++I + L+ + P + + L+Q
Sbjct: 84 FGSVYNTIPFVARMYDGFLPVNYIYSTINKALLTVLLICAPFFIFGFLIAFLCDLVQVGF 143
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
++P +++ G+K+I+S + + +KS +K++++G +I + ++
Sbjct: 144 KPTSKPLQPKLSKLNPISGMKKIFSTRKIFDLLKSILKLVIMGVVIISYFSNRQESIFLL 203
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ + + I I + D+ + +++ + M+KQE+KDE K +
Sbjct: 204 YDIPLKQAIGLMGSFIIDLGIRIAAAYMIIAFADLIYQRRKFHKDMMMTKQEVKDEFKNT 263
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
GNP +K+ QK R +MM+ +A ++ITNPTHYA+A+RY E DAP++VAKG
Sbjct: 264 EGNPEVKSAQKRRMMQASRRRMMQELPKADVVITNPTHYAVAIRYDAEEADAPIVVAKGA 323
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ IA+K++++A E+N+ I E LAR L+ V I +PP YKAVA+++ +YH K
Sbjct: 324 DYIAQKIKEVAKENNVEIVENKPLARMLYANVEIGEMVPPELYKAVAEVLAYVYHLK 380
>gi|92116950|ref|YP_576679.1| flagellar biosynthesis protein FlhB [Nitrobacter hamburgensis X14]
gi|91799844|gb|ABE62219.1| flagellar biosynthetic protein FlhB [Nitrobacter hamburgensis X14]
Length = 359
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ K+++DAL G+ S+E + + I + L F V
Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLATFGGSVGGGVEM 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+A++ Q + + ++ L L + + LL+ M+ I ++Q V +
Sbjct: 61 PLRNLIANSWQIRTDGPG-LLALAQQLEYILAAALGLPLLMLMLAAIAGNVVQHRFVWSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++S+ G KRI+ NF K K++ +G ++T L + + +
Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDALVRLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P++IL ++L ++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNAILPTTTTLTLQLLGAVVAMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + +R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA
Sbjct: 240 HIKARIRQLRHARMKKRMMAAVPKASVIITNPTHYSVALSYERG-MSAPVCVAKGMDNIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I + K
Sbjct: 299 LKIREIAREHDIPIVENVPLARALYATVKIDDEIPVEHYHAVAEIIGYVMGLK 351
>gi|259908202|ref|YP_002648558.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
gi|224963824|emb|CAX55326.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
gi|283478130|emb|CAY74046.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
Length = 383
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + +
Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ L+ ++ L A V+P + ++ I + ++ V++
Sbjct: 60 LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVISG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +G+ +++S+ + +K+ +K LVG + + + ++ ML ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSVQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPMVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351
>gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
novyi NT]
Length = 610
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + K+ +A +G S+E + +L I LL S+ D+
Sbjct: 262 SDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEFF 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L + ++ ++ + + +P +L M+ G+G+ L+Q + + +KP
Sbjct: 322 TNYLNMNLNS-GSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKPQ 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G K+I+S+ ++ +K I ++G + L N+ +L S I+
Sbjct: 381 LSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVIIT 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK +
Sbjct: 441 SFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++I
Sbjct: 501 KQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKEI 560
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+ +PI E LAR +FK+V + S IP Y+AVA+++ +Y K
Sbjct: 561 AKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 607
>gi|307824492|ref|ZP_07654717.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
SV96]
gi|307734476|gb|EFO05328.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
SV96]
Length = 374
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 176/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ND KTE P+ K++ DA +G P SRE + F ++A LL +
Sbjct: 1 MSDNDD---KTEDPTGKRLADARKKGQIPRSRELNTFVILMASATMLLTQGGTIGNGLLK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D I L + L+ P + + ++ I + + V +
Sbjct: 58 IMRTTFR-LSRAAIFDPDSITLYLKQAMIDTVMLLAPFMAVMVVVAIVTPISMGGWVFSW 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + +++ GI RI++I LV K+ +KI+LV + +L +
Sbjct: 117 EAIAFNPSKMNPIAGIARIFAIRGLVELFKALLKILLVFAVAVALYRSFIGELLSLGGES 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + HA + ++++ + + ++D+ + +KMSKQEIKDE K + G+P
Sbjct: 177 PIHSIGHALDIIGTCILLLSSSLILVVMIDVPYQLWDHSKNMKMSKQEIKDENKDAEGSP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+ + + +MME +A +I+TNP+HYA+AL+Y Q N AP LVAKG +LIA
Sbjct: 237 EVKGRQRRMQMETAQRRMMEEVPKADVIVTNPSHYAVALKYDQNSNSAPKLVAKGVDLIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R A +P+ P LAR+L+ ++ IP Y AVAQ++ +Y K
Sbjct: 297 AQIRNAAIGSGVPLVASPPLARALYYSTELDREIPQGLYLAVAQILAYVYQLK 349
>gi|395390|emb|CAA52218.1| flagellar biosynthetic protein [Bacillus subtilis]
Length = 360
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S +
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNSAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P
Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356
>gi|330808231|ref|YP_004352693.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376339|gb|AEA67689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 378
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K++ ++ +G S+E + + +LA LL + +
Sbjct: 1 MAESESGQDKTEDPTEKRLRESREKGETARSKELNTLAVMLAGAGGLLIYGGGLALDLLE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S + L + L H A + P L+ ++ + + +
Sbjct: 61 IMRLNF-SLPREVLLTPGSMAQYLLHSGKIAILAIQPVLIFLLLAAVIGPISLGGWLFAA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + L+ +K+F K +LV + L + +L
Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSTSALMELLKAFGKFLLVLFVALTVLQSDIDDLLRIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + I + + +D+ +Q KL M+KQE++DE K S G P
Sbjct: 180 LEQAIIHSVQLVGWSTLWIACGLILIAAIDVPIQLYQSKQKLMMTKQEVRDEHKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A A ++ITNPTHYA+AL+Y + +APVL+AKG + +A
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKGSDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA + + + E P+LARS++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQIR 352
>gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT]
Length = 575
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + K+ +A +G S+E + +L I LL S+ D+
Sbjct: 227 SDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEFF 286
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L + ++ ++ + + +P +L M+ G+G+ L+Q + + +KP
Sbjct: 287 TNYLNMNLNS-GSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKPQ 345
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ G K+I+S+ ++ +K I ++G + L N+ +L S I+
Sbjct: 346 LSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVIIT 405
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK +
Sbjct: 406 SFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGKI 465
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++I
Sbjct: 466 KQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKEI 525
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+ +PI E LAR +FK+V + S IP Y+AVA+++ +Y K
Sbjct: 526 AKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 572
>gi|325291951|ref|YP_004277815.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
gi|325059804|gb|ADY63495.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
Length = 360
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 152/353 (43%), Positives = 233/353 (66%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G +
Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L Q L + LL L S + L++P +++F++FG+ S Q +P L
Sbjct: 61 TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K
Sbjct: 301 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353
>gi|238924151|ref|YP_002937667.1| flagellar biosynthesis/type III secretory pathway protein
[Eubacterium rectale ATCC 33656]
gi|238875826|gb|ACR75533.1| flagellar biosynthesis/type III secretory pathway protein
[Eubacterium rectale ATCC 33656]
gi|291524884|emb|CBK90471.1| flagellar biosynthetic protein FlhB [Eubacterium rectale DSM 17629]
Length = 382
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 94/355 (26%), Positives = 177/355 (49%), Gaps = 5/355 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE + KK++DA EG S+E + ++ + L F S ++
Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84
Query: 62 LHVLLASATQRKLEDISHI-----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ E I L ++ L V+P ++ I +IQ
Sbjct: 85 FSTVYKKMPDFLKESQEQISSVSVTHYLNNVILQFLLTVLPFFAFGVVITILVSIIQVGF 144
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
++ + P + + G KRI S +++ +KS +K+ ++ + S+ + +
Sbjct: 145 KISTKPMAPKLSKFNPINGFKRILSKDSIFELLKSVLKVGIIMYVAYSSVKSHQNDIFIL 204
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ + + I + + + D ++ H++ + +KM+KQE+KDE K +
Sbjct: 205 YELPLKQAIVLIGDIIINTGLKISIVYMIVGIADFAYNKHKFNNDMKMTKQEVKDEFKNT 264
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK +Q+ + + +MM+ +A ++ITNPTH+A+A++Y +NDAPV+VAKGQ
Sbjct: 265 EGDPAIKGQQRKRMQEASQRRMMQDVPKADVVITNPTHFAVAVKYDAQKNDAPVVVAKGQ 324
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ +A+K+++IA ++NI I E LAR LF V + + IPP Y++VA+++ IY
Sbjct: 325 DYVAQKIKEIARDNNIHIVENKPLARMLFHNVDLGAEIPPELYRSVAEILAMIYK 379
>gi|328543170|ref|YP_004303279.1| flagellar biosynthesis protein B [polymorphum gilvum SL003B-26A1]
gi|326412916|gb|ADZ69979.1| Flagellar biosynthesis protein B [Polymorphum gilvum SL003B-26A1]
Length = 359
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ KTE P+ K++++A +G+ P S+E S + ++ + + F + +
Sbjct: 1 MADDTDDSEKTEDPTQKRLKEAHEKGDLPKSQEVSTWFTLAGAAMMIALFAPAVTTELGT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L A + D + L S + +V LL + + L+Q V
Sbjct: 61 QLKWYLEHAHEIPA-DGYALKALWRDTGQSVALIVGLPLLALVAMAVAGNLVQHEAVFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +VS G KR++S +L+NF K +KI++VG ++ L I +
Sbjct: 120 EPIKPKLSKVSPLSGFKRLFSGQSLMNFAKGMLKIVIVGAVMVAVLWPQRDRAEAVIFVD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S+L A V ++L +L + + D W H+W+ K KMS +E+K+E KQ+ G+P
Sbjct: 180 VSSLLEEARGLVLQLLAAVLAIMTVVAGADYVWQRHKWFEKQKMSMRELKEEYKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K + + + R R +MM A +AT+++TNPTHYA+ALRY + AP+ VAKG + IA
Sbjct: 240 LVKGKIRQLRMERSRKRMMAAVPQATVVVTNPTHYAVALRYEEG-MGAPLCVAKGTDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A +H +P+ E P LAR+L+ V ++ IP YKAVA++I ++ +
Sbjct: 299 LKIREVARQHEVPVVENPPLARALYASVDVDREIPEDHYKAVAEVIGFVFRMR 351
>gi|229513771|ref|ZP_04403233.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
gi|229348952|gb|EEO13909.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
Length = 376
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE ++++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|292488559|ref|YP_003531443.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
gi|292899731|ref|YP_003539100.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
gi|291199579|emb|CBJ46696.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
gi|291553990|emb|CBA21035.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
gi|312172704|emb|CBX80960.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
BAA-2158]
Length = 383
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + +
Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSILMLITGLSILWVGGEWMGRKMGA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ L+ ++ L A V+P + ++ I + ++ VL+
Sbjct: 60 LLADGLV-FNHSVVSDSSQMLRLVANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ +
Sbjct: 119 KAIKFDPGKMNPVKGLAKLFSAQSASELLKAVLKATLVGIVCGLYIWHHWAGMLHLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P
Sbjct: 179 PLIALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVLAKGAGDIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E+ IPI E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 299 LRIRELAAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351
>gi|254420201|ref|ZP_05033925.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
gi|196186378|gb|EDX81354.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
Length = 358
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ P++KTE + +K+EDA +G+ S++ S+ +L S+
Sbjct: 1 MADDTDPESKTEDATPRKLEDARKKGDVAKSQDVGQVLSLAGAAAVILGAGGWFAGSMAQ 60
Query: 61 DLHVLLASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L +A+ Q + D +L + + + +L ++ G G +L Q +
Sbjct: 61 QLLPFIAAPHQMLGMLDSGAGAQILAQALWAMTPFLGAVMLATIIGGAGGHLAQSGLIFT 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP + V+ G KRI+ + L+ F+K+F+K+I V + + L + + ++
Sbjct: 121 AEKLKPKWSSVNPMSGFKRIFGPDGLMQFVKTFLKLIAVCVVCWMVLKPHVREFENMVTL 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P ++L A + + ++ + D W ++ +++M+K+E+K++ KQS G+
Sbjct: 181 SPAALLPLARDMALALFVAAIILLGATAGADFIWQKMRFAKRMRMTKEELKEDYKQSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNL 298
P IK + K I R R +MM +AT+I+TNPTHY++ALRY + APV VAKG +
Sbjct: 241 PHIKAKLKQIRMQRSRQRMMANVPKATVIVTNPTHYSVALRYEPSEGDGAPVCVAKGVDA 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+A ++R++A EH +PI E LAR+L+ V I++ IP ++A A++I ++
Sbjct: 301 LAMRIREVAKEHGVPIVENVPLARALYASVEIDAVIPKEHFEAAAKIIGFVFQ 353
>gi|239997097|ref|ZP_04717621.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126]
Length = 374
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK+EDA +G SRE S ++ LF SV
Sbjct: 1 MA---DSSEKTEDPTGKKLEDARKKGQLARSRELSTTLVLIVSAFMFLFVGGWIAESVFK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + DI+H+ + V+ +++ M+ GI +
Sbjct: 58 LTQRMFI-LSRDETYDITHMFGAWGEAFSAVGPTVLLYMVVAMIAGIYGSIALGGFNFTW 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
KP ++S +G KR++ +N LV +KS K++++ + +L L
Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGMNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + G+P
Sbjct: 177 YPGNIFHALDMLKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + +A
Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGVRAPVVVAKGADELA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K
Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349
>gi|153213288|ref|ZP_01948700.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
gi|229528868|ref|ZP_04418258.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
gi|124116088|gb|EAY34908.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
gi|229332642|gb|EEN98128.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
Length = 376
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +TE ++++++ A +G S+E + S ++ + L++F +
Sbjct: 1 MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ ++ D+ + ++ ++ ++ L + + +
Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + + V +KS +K++LV + + + +
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351
>gi|288958052|ref|YP_003448393.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288910360|dbj|BAI71849.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 358
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 196/353 (55%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+ +KTE P+ KK+++A +G ++REA+ + + A L+ L+ + +
Sbjct: 1 MSEDADESSKTEDPTGKKLDEAHRQGQFAMTREAANWLMVAAMLVVLVSVLPGTMKGLVF 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+ + Q D + + LL + + +LLF++ G+ + + Q ++
Sbjct: 61 RLNYYFENLDQF-TFDRAGVGALLFRVMRDVMWALWLPILLFVVAGVMATIGQTGFHVSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+ ++ N V +KS VK+ +VG + ++L + + +I +
Sbjct: 120 QLIEPKFSKLNPLPGLMNMFKANQAVELLKSIVKLAVVGGVAYMALRPMFGGIETYIGID 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L ++LI +L+ + + D W Q+ ++KM+KQE+KDE KQ G+P
Sbjct: 180 LITMLSQMDGLAHRLLIWVLVVLTFIAAGDFLWQKKQFDKQMKMTKQEVKDEHKQQEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + I R R +MM A A +++TNPTH+A+AL+Y ++ AP+++AKG + +A
Sbjct: 240 VVKGRIRQIRFERARKRMMAAVPDADVVVTNPTHFAVALKYDPSQMGAPLVLAKGVDQVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +N+P+ E P LAR+L+ I+ +P Y+AVA++I ++ K
Sbjct: 300 FKIREIAESNNVPVIENPPLARALYAACDIDEEVPSEHYRAVAEVITYVFKLK 352
>gi|188991600|ref|YP_001903610.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
campestris str. B100]
gi|167733360|emb|CAP51561.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 376
Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + + L+ + GI S
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGTGVFALMLM-ARGIGDGAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
S + E+ + L L +++P + + + G+ L+ +
Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y +
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|332140595|ref|YP_004426333.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550617|gb|AEA97335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 374
Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK++DA +G SRE S ++ + LF SV
Sbjct: 1 MA---DSSEKTEDPTGKKLDDARKKGQLARSRELSTTLVLIVSAVMFLFVGGWIAESVFK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + DI+H+ + V+ +++ M+ GI +
Sbjct: 58 LTRRMFI-LSRDETYDITHMFGAWGEAFSAVGPAVLLYMVVAMIAGIYGSIALGGFNFTW 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
KP ++S +G KR++ N LV +KS K++++ + +L L
Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGTNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L+HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + G+P
Sbjct: 177 YPGNLFHAMDILKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + +A
Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGIRAPVVVAKGADELA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K
Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349
>gi|259907600|ref|YP_002647956.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
gi|224963222|emb|CAX54706.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
gi|283477442|emb|CAY73358.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
Length = 381
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS ++ + KTEAP+ +I A EG P S+E + +L +L + S+ S
Sbjct: 1 MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH + + + D + ++ + L A + ++P + ++ + + + +L+
Sbjct: 60 LLHNAMI-FDRLLILDPAQMLQRSSSLLGQAFKAIMPFVFGLLLTAVSAPPLIGGLILSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P K+++ GIKR++S +K+ +K++L + L N + I
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P
Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y +
Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351
>gi|148269163|ref|YP_001243623.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
gi|281411461|ref|YP_003345540.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
RKU-10]
gi|147734707|gb|ABQ46047.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
gi|281372564|gb|ADA66126.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
RKU-10]
Length = 374
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 6/345 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+TE + +K EG AP+SRE ++ + L + L F G+ +T D+ L+
Sbjct: 32 ERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAFLS- 90
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
E+ ++ + ++ ++ M+ G+ +Q + +KP
Sbjct: 91 -----FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKPDLN 145
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + +
Sbjct: 146 RINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAFANF 205
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK RQ+
Sbjct: 206 WDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRRQRQ 265
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ +IA
Sbjct: 266 MMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIEIAK 325
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK
Sbjct: 326 ENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370
>gi|163852023|ref|YP_001640066.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
PA1]
gi|163663628|gb|ABY30995.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
PA1]
Length = 354
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 191/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T
Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ L A + +++ L + A L +P L + M+ I + LIQ P+
Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+S G KR+ ++ VNF K KII+VGTI L + F +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + +
Sbjct: 299 LRIRAVATDHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351
>gi|146282913|ref|YP_001173066.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri A1501]
gi|145571118|gb|ABP80224.1| flagellar biosynthetic protein FlhB [Pseudomonas stutzeri A1501]
Length = 378
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +K+E P+ K++ ++ +G SRE S + L + LL ++ +
Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ L D +V LL L A ++P L+ ++ I + + +
Sbjct: 61 MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR++S LV +K+ K ++V + + L+ +L
Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + +D+ + KL M+KQE+KDE K S G P
Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP LVAKG + +A
Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352
>gi|21231358|ref|NP_637275.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768589|ref|YP_243351.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
campestris str. 8004]
gi|21113019|gb|AAM41199.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573921|gb|AAY49331.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 376
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + + L+ + GI S
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGTGVFALMLM-ARGIGDGAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
S + E+ + L L +++P + + + G+ L+ +
Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNRP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y +
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|188533614|ref|YP_001907411.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
gi|188028656|emb|CAO96518.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
Length = 383
Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ KTE+P++ ++E A EG P SRE + ++A L L + +
Sbjct: 1 MS-QDSDQEKTESPTAHRLEKAREEGQIPRSRELTSILMLIAGLSILWGGGEWMGRKLGA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D S ++ + +L A V+P + ++ I + ++ VL+
Sbjct: 60 LLADGLV-FNHSMVSDTSQMLRQIANLLQQAVLAVLPMMFGLVVVAIAAPMLLGGLVLSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +G+ ++ S + +K+ +K LV + + + ++ ML ++ +
Sbjct: 119 KAIKFDLGKMNPIKGLAKLVSAQSAAELLKAVLKATLVSIVCGLYIWHHWAEMLRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P
Sbjct: 179 PITALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVLAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ ++ +
Sbjct: 299 LRIRELGAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351
>gi|121997283|ref|YP_001002070.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
gi|121588688|gb|ABM61268.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
Length = 391
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 169/352 (48%), Gaps = 2/352 (0%)
Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+ E++ KTE P+ K+ E++ +G P SRE + +L LL +T
Sbjct: 1 MAQESEDGQEKTEDPTPKRREESRKKGQVPRSRELTTMLLLLVAAGALLALGPFMGNQLT 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ L + + + D ++ L V+P + + + + + +
Sbjct: 61 ALLEWSF-TIDRSHIYDPGIVIERLHEALGRGLLTVLPFIAVMLAAAVIAPTALGGWSFS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P +++S +G +R++ V K+ K++++G + A
Sbjct: 120 FHPMQPKPEKLSPIKGFQRMFGTKAAVELGKALGKVLVIGGTAVGLFVLFWDNFYTMSRA 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ L + + +DI + + K++M++QE+K+E KQ+ G
Sbjct: 180 PLEPSMAEGMRLFYIFFFLLALSMLVVVAIDIPYQIYDHTQKIRMTRQEVKEEFKQTEGK 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R + R +MME A ++ITNP HYA+AL+Y Q+ AP +VAKG +L+
Sbjct: 240 PEVKQRVREQQREMTNRRMMENVPDADVVITNPAHYAVALKYDQSTMRAPTVVAKGADLL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A ++R++A E++I IF+ P LAR+L+ ++ IP Y AVAQ++ +Y
Sbjct: 300 AARIRELAEENDILIFQAPPLARALYHSADLDQEIPGALYFAVAQVLAYVYQ 351
>gi|327481253|gb|AEA84563.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
Length = 378
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +K+E P+ K++ ++ +G SRE S + L + LL ++ +
Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ L D +V LL L A ++P L+ ++ I + + +
Sbjct: 61 MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+KR++S LV +K+ K ++V + + L+ +L
Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + +D+ + KL M+KQE+KDE K S G P
Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP LVAKG + +A
Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y +
Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352
>gi|295690541|ref|YP_003594234.1| flagellar biosynthetic protein Flhb [Caulobacter segnis ATCC 21756]
gi|295432444|gb|ADG11616.1| flagellar biosynthetic protein FlhB [Caulobacter segnis ATCC 21756]
Length = 361
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 203/353 (57%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ P++KTE PS+K++ DA +G+ S + +S+ + ++ +++
Sbjct: 1 MADDTDPESKTEEPSAKRLADARAKGDVVKSADIPQLASLAGAVSVVILAGGWLTRDLSA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+ +A A L +V ++ +++A +I +L+ G +++ Q +L
Sbjct: 61 ALYPFIAHAGTIDLSSAGAMV-VMKQATMAALPPLILVMLVSAFAGAIAHIAQSGFLLTP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP F ++ L +G+ RI+ I+ V F KS VK ++ G I + L + + + + +
Sbjct: 120 SKLKPDFSKLDLIKGLGRIFGIDGFVQFAKSAVKFLVTGLIAWMVLKPHVGEVRNLVGMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++L A + +L+ +++F+ D W ++ ++++M+ QE+KDE KQS G+P
Sbjct: 180 PAAMLPEALKLSKSLLMAVIIFLTATAAFDWFWQRQRFMNRMRMTLQEVKDEFKQSDGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ I R R +MM+A +AT+++ NPTHYA+AL+Y E AP+ VAKG + +A
Sbjct: 240 HVKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEAGETPAPLCVAKGVDELA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R IA EH +P+ E+P LAR+L+ V ++ IP ++AVA++I I + K
Sbjct: 300 LKIRAIAEEHGVPVLEDPPLARALYASVEVDEEIPVEHFEAVAKVISFILNGK 352
>gi|262276382|ref|ZP_06054191.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
gi|262220190|gb|EEY71506.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
Length = 377
Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END +TE + ++ + A +G P SRE + + ++ + L++F ++ +
Sbjct: 1 MAEND-GQERTEDATPRRQQQAREKGQVPRSRELASVAVLVVGAVALMWFGESLGNALMA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + T+ ++ D++ + + + LL+ + G+ +
Sbjct: 60 MMRKLF-TLTREEIFDVTSLGLIGYGAIFHIFWPITFILLMLFIAGLIGASALGGVSFSW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+P ++S +GIKR++ + V +KS +K+ LV + + +
Sbjct: 119 EAARPKLSKMSPLQGIKRMFGKQSWVELIKSILKVALVSGVAFYLMWASLNDFYQLSIET 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ LYHA + +++I + + +D+ + Q +LKM+KQEIKDE K++ G P
Sbjct: 179 FPTNLYHALDILLNFVLLICCSLLVVVAIDVPFQIWQHNEQLKMTKQEIKDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A ++ITNP HY++ALRY + APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMAEVPSADVVITNPEHYSVALRYDSKMDKAPVVVAKGSDFLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EH+I I P LAR+++ + IP + A+AQL+ ++ K
Sbjct: 299 LKIREIAAEHDITIVPAPPLARAVYYSTELEQQIPDGLFTAIAQLLAYVFQLK 351
>gi|123442794|ref|YP_001006771.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332161312|ref|YP_004297889.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122089755|emb|CAL12608.1| flagellar biosynthetic protein FlhB [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318605230|emb|CBY26728.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665542|gb|ADZ42186.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860618|emb|CBX70915.1| flagellar biosynthetic protein flhB [Yersinia enterocolitica
W22703]
Length = 383
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +K+E P++ K+E A +G P SRE + + A L L + +
Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D ++ + L +IP ++ + ++ + +
Sbjct: 60 MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIALIPIFAGLVIVAMAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ ++A
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L + + D+ + KL+M+KQEI+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|2494575|sp|Q56886|FLHB_YEREN RecName: Full=Flagellar biosynthetic protein flhB
gi|793892|emb|CAA88185.1| flhB [Yersinia enterocolitica]
Length = 383
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +K+E P++ K+E A +G P SRE + + A L L + +
Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D ++ + L +IP ++ + ++ + +
Sbjct: 60 MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIGLIPIFAGLVIVAMAVPMLLGGVLFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ ++A
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L A + ++++L + + D+ + KL+M+KQEI+DE K G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gi|148266206|ref|YP_001232912.1| flagellar biosynthesis protein FlhB [Geobacter uraniireducens Rf4]
gi|146399706|gb|ABQ28339.1| flagellar biosynthetic protein FlhB [Geobacter uraniireducens Rf4]
Length = 354
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D +KTE P+ K+I DA +GN P SR+ + +++A +I L ++
Sbjct: 1 MSEQD-KHSKTEQPTGKRISDAKEKGNIPRSRDLTSTVTLMAGIIALYVTGGFMFSTLKG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LLA + + + L+ L + + ++ P LL+ ++ G+ + + Q +
Sbjct: 60 SAKELLAGIATQDMTQAG-VYTLMLKLLFTTTLVLAPFLLVVVVAGLVAEISQGGISTSF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F++++ +G+KR+++ + V +KSF+KI++VG + + + ++ + +
Sbjct: 119 EKIGFDFEKLNPVQGVKRLFNKDAAVQVLKSFLKIVIVGYMAYRVMRDEVNNLIYLVDMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I K+++ + L+VLD+ + ++ LKM+KQE+KDE K S G+P
Sbjct: 179 IGGITEFIGHISFKIVLHTCGALFILSVLDLIFVKWRFIENLKMTKQEVKDENKDSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + K + R +M A +++TNPTH+A+AL+Y + + APV++AKG + +A
Sbjct: 239 HIKGKIKQKQFEQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++IA E NI + E LAR L+ QV IP Y AVA+++ +Y K
Sbjct: 299 QRIKEIARESNITLVENRFLARELYAQVKEGEEIPEALYAAVAEILAYVYSLK 351
>gi|260886652|ref|ZP_05897915.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
35185]
gi|330839517|ref|YP_004414097.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
35185]
gi|260863795|gb|EEX78295.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
35185]
gi|329747281|gb|AEC00638.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
35185]
Length = 366
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 3/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE P++K+ DA +G S+E S +LA + S + + + + A
Sbjct: 19 GEKTEEPTAKRRNDARQKGQVARSQELSGAFVLLAGFFVMRALGSTILTEIETYTVHIYA 78
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ Q D ++ L+ + ++ P ++ ++ G+ Q + +
Sbjct: 79 NMNQ--TVDAETVMRLIIDGMIVLAKTAFPVMIAILVMGLAINFYQVGFMFTTEPLSFKL 136
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G RI+S ++V +KS +KI ++G + + L+ M +FI + S +
Sbjct: 137 DKLNPITGFGRIFSKRSIVELLKSLLKIAIIGAFLYVYLSGEIMHMPEFIYLDLKSSMAR 196
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ ++ I++ + D + Q LKMSKQ+IK+E KQ+ G+P IK + +
Sbjct: 197 MGDIIFSLVFQIIIVYFVMAAADFAYQKWQTTQDLKMSKQDIKEEFKQTEGDPQIKGKIR 256
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ ++MM+ A +I+TNPTHYA+AL+Y AP +VAKGQ+L+A+K++ IA
Sbjct: 257 QKQQQMAMNRMMKEVPEADVIVTNPTHYAVALKYKAG-MKAPEVVAKGQDLVAQKIKDIA 315
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH + I E LAR+L+ V + +PP Y+AVA+++ +Y K
Sbjct: 316 REHRVTIVENKPLARALYAAVDVGGIVPPELYQAVAEVLAYVYRLK 361
>gi|113969638|ref|YP_733431.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-4]
gi|114046868|ref|YP_737418.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-7]
gi|113884322|gb|ABI38374.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-4]
gi|113888310|gb|ABI42361.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-7]
Length = 376
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 77/340 (22%), Positives = 161/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +L+ L ++++ + + +
Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGLYMLGPGIAKALSNVFERVF-TMDRAA 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + + + ++ +LL ++ + + + P ++S
Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V + L+ + +L + + ++HA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ + IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351
>gi|302392376|ref|YP_003828196.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
5501]
gi|302204453|gb|ADL13131.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
5501]
Length = 353
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ K+ ++A EG S+E S+ ++L I L F +Y ++
Sbjct: 4 EEKTEDPTPKRRQEAREEGQVAQSQELSMAFTLLFSFIMLFFLMDNILYESMEFMNKYFT 63
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L ++ LL L RLV P + + + G+ L+Q + ++P
Sbjct: 64 DYMTMTL-NLQTFYTLLLELMQFIFRLVAPLMFVVALVGVVVGLLQTGFLFTPTSLQPDP 122
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ G K+I+S + F KS +KI +VG I +++ +N ++ F + ++
Sbjct: 123 SKLDPVSGFKQIFSKQTVAEFFKSILKISIVGGIAYLTIKDNLPQLIMFSKMGLNQVVSL 182
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + I + L + L +LD + + +LKM+KQE+K+E KQ+ GNP IK RQK
Sbjct: 183 IGSIIYSLAIKVSLILILLGILDFIYQKWEHEQQLKMTKQEVKEEKKQTEGNPEIKKRQK 242
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ ++MME+ A ++ITNPTH A+A+++ DAP++VAKG+ IA K++K A
Sbjct: 243 EKQQEMAMNRMMESVPEADVVITNPTHIAVAIKFDIDNMDAPIVVAKGKGEIAHKIKKKA 302
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E I I EE LAR+L+ QV I IP Y+AVA+++ +Y
Sbjct: 303 EECGIEIVEEKPLARALYGQVEIEEEIPMELYQAVAEILAYVYQL 347
>gi|188581880|ref|YP_001925325.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
gi|179345378|gb|ACB80790.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
Length = 355
Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 193/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T
Sbjct: 1 MADESDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSAKPMAEGLTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ L A + +++ L + A L +P L + M+ I + LIQ P+
Sbjct: 61 DMRGFLEHAGSIPSDAGTYLGVALRAGWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+S G KR+ + VNF K KII+VGTI L + F +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGTDAWVNFGKGLAKIIVVGTIAGAILWNEHDRAESFAQLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + L K++ +L A + + D + H+W+++L+M+K+E+K E K+S G+P
Sbjct: 180 PGAALQGTLTLALKMMGGMLAAYAAIALGDALYQRHRWHTRLRMTKEEMKQEHKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + ++R++ +MM A AT+++TNPTHYA+ALRY APV VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDSLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A +H++P+ E P LAR+L V +++ IP Y+AVA++I + +
Sbjct: 299 LRIRAVAADHDVPVLENPPLARALHATVEVDAEIPAEHYRAVAEVIGFVLRLR 351
>gi|149928479|ref|ZP_01916714.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
gi|149822813|gb|EDM82064.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
Length = 376
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 173/352 (49%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E K S +KI A EGN P SRE +LA + L +
Sbjct: 1 MAEETD-QEKDLPASEQKIRKAREEGNLPRSRELGGGVVLLAGVGLLYTMGGELVSQSEK 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D H+ + + ++IP L+ ++ I S + +
Sbjct: 60 LMRQGLV-LDRAQAFDTKHMGLKWVSMLQESLFILIPLFLVVVVAAIVSNIAVGGFNWST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ +G+K I+S+N L +K+ +K +++G + + L ++ +
Sbjct: 119 KPLEPKLSKLNPVKGLKNIFSVNGLAELVKAILKTVVLGGVGYLLLMQDLGEFTQLSAMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ K +++ + + +D+ + ++Y L+M+ +E+K E K+S G+P
Sbjct: 179 LEHGMAETARITIKDALILAIAFLLIVSIDVPYQLWRYYKGLRMNLEELKRESKESDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + KS+ R R +MM + A +I+TNPTHY++AL+Y + AP +VAKG +A
Sbjct: 239 HLKGKIKSMQREAARRRMMASVPNADVIVTNPTHYSVALKYDKDGKGAPRVVAKGIGPLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R++A E+ +P+ E P LAR+L+ V + IP Y AVA+L+ +Y
Sbjct: 299 LKIREVAQENKVPLVEAPPLARALYSNVELEQEIPGALYTAVAKLLAYVYAL 350
>gi|240139290|ref|YP_002963765.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
AM1]
gi|254561746|ref|YP_003068841.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
DM4]
gi|240009262|gb|ACS40488.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
AM1]
gi|254269024|emb|CAX24985.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
DM4]
Length = 354
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T
Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ L A + +++ L + L +P L + M+ I + LIQ P+
Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+S G KR+ ++ VNF K KII+VGTI L + F +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + +
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351
>gi|170287825|ref|YP_001738063.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
gi|170175328|gb|ACB08380.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
Length = 374
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 6/345 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+TE + +K EG AP+SRE ++ + L + L F G+ +T D+ L+
Sbjct: 32 ERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAFLS- 90
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
E+ ++ + ++ ++ M+ G+ +Q + +KP
Sbjct: 91 -----FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKPDLN 145
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + +
Sbjct: 146 RINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAFANF 205
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK RQ+
Sbjct: 206 WDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEMKDELKEVEGNPEIKRRQRQ 265
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ +IA
Sbjct: 266 MMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIEIAK 325
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK
Sbjct: 326 ENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370
>gi|218530777|ref|YP_002421593.1| flagellar biosynthetic protein FlhB [Methylobacterium
chloromethanicum CM4]
gi|218523080|gb|ACK83665.1| flagellar biosynthetic protein FlhB [Methylobacterium
chloromethanicum CM4]
Length = 354
Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T
Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ L A + +++ L + L +P L + M+ I + LIQ P+
Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+S G KR+ ++ VNF K KII+VGTI L + F +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDAFYQRNRWHKRLRMTKEEMKQEHKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + +
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351
>gi|15643671|ref|NP_228717.1| flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
gi|4981445|gb|AAD35990.1|AE001755_13 flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
Length = 374
Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats.
Identities = 101/345 (29%), Positives = 187/345 (54%), Gaps = 6/345 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+TE + +K EG AP+SRE ++ + L + L F G+ +T D+ V L+
Sbjct: 32 ERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQVFLS- 90
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
E+ ++ ++ +V ++ M+ G+ +Q + +KP
Sbjct: 91 -----FEETEDLLMNAVNIFKDVLLIVGAFVVFSMVAGVMIGALQTRFLFAPKALKPDLN 145
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ + + +
Sbjct: 146 RINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMSVNDAFANF 205
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK RQ+
Sbjct: 206 WDITSEITLKSGMILLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRRQRQ 265
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ +R +M+E +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ +IA
Sbjct: 266 MMYDILRRRMLEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLAFKIIEIAK 325
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK
Sbjct: 326 ENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYAKK 370
>gi|117919803|ref|YP_868995.1| flagellar biosynthesis protein FlhB [Shewanella sp. ANA-3]
gi|117612135|gb|ABK47589.1| flagellar biosynthetic protein FlhB [Shewanella sp. ANA-3]
Length = 376
Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats.
Identities = 77/340 (22%), Positives = 161/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +L+ L ++++ + + +
Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGLYMLGPGIAKALSNVFERVF-TMERAA 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + + + ++ +LL ++ + + + P ++S
Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V + L+ + +L + + ++HA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ + IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351
>gi|15887910|ref|NP_353591.1| flagellar biosynthesis protein FlhB [Agrobacterium tumefaciens str.
C58]
gi|2459702|gb|AAB71778.1| FlhB [Agrobacterium tumefaciens]
gi|15155504|gb|AAK86376.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
Length = 360
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 154/350 (44%), Positives = 235/350 (67%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G +
Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPEGAGRLGV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L Q L + LL L S + L++P +++F++FG+ S +Q +P L
Sbjct: 61 TLKDLFGQPEQWNLSTRPDALALLYFLGTSVAYLLMPAMIMFIVFGLASSFLQNLPSPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V+P + R+S +G RIYS V F KS KI++V I+ +L ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFTRIYSKQGFVEFAKSVFKIMIVSIIMFFALRGDFYSLIDLMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I V+K++++ILL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVEIVKKMMVVILLSTALLAAVDVLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+RQ+SIAR R R +M+ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKSRQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA E+NIP+FE+P LARS+F QV ++S IPPVFYKAVA+L++++Y
Sbjct: 301 LKIRQIAEENNIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELVHRVY 350
>gi|307610486|emb|CBX00058.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 130b]
Length = 425
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PSSK+++++ +G S++ + +L + F + S
Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L ++ + L L+ S V+P LL+ + + + L+ V +
Sbjct: 61 IMQQAFD-FDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+++ +G KR+ S+ + +K+F+K +LV + + L +L+ A
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFIEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352
>gi|146341890|ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS278]
gi|146194696|emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS278]
Length = 359
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTE P+ K+++ AL G+ S+E + + I A + + F +V
Sbjct: 1 MAEEGDTEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+A++ D + ++ L LS + + +L+ M+ I ++Q V +
Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPS ++S G KR++ NF K K++L+GT++ + L + + +
Sbjct: 120 EPLKPSLSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+L ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VAELLGVTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSYERG-MQAPVCVAKGVDNIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H+IPI E LAR+L+ V I+ IP Y AVA++I + +
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEIIGYVMGLR 351
>gi|15615002|ref|NP_243305.1| flagellar biosynthesis protein FlhB [Bacillus halodurans C-125]
gi|10175059|dbj|BAB06158.1| flagella-associated protein [Bacillus halodurans C-125]
Length = 363
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 93/346 (26%), Positives = 179/346 (51%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S + + +L ++L F P + L +
Sbjct: 14 QEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKLLIHTF 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + L+ +++ A+ +++P + + ++ G+ + IQ P+ +K
Sbjct: 74 ESYLLMDVTEESVAELMFEITMEAAIVLLPIMAIALIAGVLASYIQVGPLFTTEPLKMKL 133
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G KRI+S+ LV F+KS +KI+L G + + ++ + +
Sbjct: 134 SKIDPIKGAKRIFSVRALVEFLKSLLKIVLTGLAAFSIVWFSLEDVMLLSQKSVENSFVT 193
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ I+I + + L++ D + + +++MSKQ++KDE K G+P +K+++K
Sbjct: 194 VAQLTALLGILIAILLLILSIPDYLYQRYDHEKQIRMSKQDVKDEHKNVEGDPKVKSKRK 253
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+MM+ +A ++ITNPTHYA+AL+Y Q++ DAPV+VAKG + +A K++ +A
Sbjct: 254 QKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQSKMDAPVIVAKGVDYVAFKIKSLA 313
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+HN+ E LAR+L+ Q I +P +KAVA+++ +Y K
Sbjct: 314 KQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVAEVLAYVYRLK 359
>gi|24374727|ref|NP_718770.1| flagellar biosynthesis protein FlhB [Shewanella oneidensis MR-1]
gi|24349387|gb|AAN56214.1|AE015759_6 flagellar biosynthetic protein FlhB [Shewanella oneidensis MR-1]
Length = 376
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 76/340 (22%), Positives = 162/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ ++++ A +G S+E + +L+ L ++++ + + +
Sbjct: 13 PTGRRLDQAREKGQVARSKELGTATVLLSAATGLYMLGPGIAKALSNVFERVF-TMDRAA 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + + + ++ +LL ++ + + + P ++S
Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V + L+ + +L + + +YHA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVALASYLLLSHYFNDILLLSADHLPGNVYHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ +P + AVAQ++ ++ +
Sbjct: 312 IVTAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 351
>gi|146293659|ref|YP_001184083.1| flagellar biosynthesis protein FlhB [Shewanella putrefaciens CN-32]
gi|145565349|gb|ABP76284.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
Length = 376
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 77/340 (22%), Positives = 163/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +L+ +++ + + + +
Sbjct: 13 PTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHVFERVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + + ++ + ++ +LL ++ + + + P ++S
Sbjct: 72 IYDTNQMFNVWGVVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V L+ + +L S + ++HA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A E+NI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351
>gi|292489168|ref|YP_003532055.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
gi|292900286|ref|YP_003539655.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291200134|emb|CBJ47260.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291554602|emb|CBA22250.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
gi|312173327|emb|CBX81582.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
BAA-2158]
Length = 381
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS ++ + KTEAP+ +I A EG P SRE + +L +L + S+
Sbjct: 1 MS-QESDNEKTEAPTPSRIARAREEGQIPRSRELTTLLMLLVGWGLMLCSGGNLVRSLQG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + + D + ++ L A ++P + ++ + + + +L+
Sbjct: 60 LLHNGLI-FDRLLILDPAQMLQRSASLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P K+++ GIKR++S +K+ +K++L + L N + I
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P
Sbjct: 179 LGMALTDISSLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y +
Sbjct: 299 LRIRELAESHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351
>gi|120598263|ref|YP_962837.1| flagellar biosynthesis protein FlhB [Shewanella sp. W3-18-1]
gi|120558356|gb|ABM24283.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
gi|319427058|gb|ADV55132.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens 200]
Length = 376
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 77/340 (22%), Positives = 163/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +L+ +++ + + + +
Sbjct: 13 PTGRRLEQAREKGQVARSKELGTAAVLLSAATGFYMLGPGIATALSHVFERVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + + ++ + ++ +LL ++ + + + P ++S
Sbjct: 72 IYDTNQMFNVWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V L+ + +L S + ++HA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A E+NI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351
>gi|149182522|ref|ZP_01860995.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
gi|148849782|gb|EDL63959.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
Length = 360
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 103/346 (29%), Positives = 182/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
K+E + KK +D+ +G S++ + +LA ++L F S + +
Sbjct: 13 GEKSEKATPKKRQDSRKKGQTAKSQDVNTAIILLAVFLFLTFSASYIGDVIFDLFRISFQ 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L S ++ ++ L + L+ P +L+ ++ G+ S IQ + ++P
Sbjct: 73 DYMMMDLTQDSFMLIVMEVLQ-QVAILLGPIMLVALLAGLFSNYIQVGVMFTAEPLQPKL 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRI+S+ +V +KS +KI VG I + L N +L + + L
Sbjct: 132 EKIDPIKGAKRIFSLRAIVELLKSILKIGFVGAITFVILWMNIDEVLGLSFKSAYDSLAA 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
++ I L + L+V D + + + ++MSKQ+IKDE K + G+P+IK++ K
Sbjct: 192 MASLTVQMGIAASLALLFLSVFDYLYQKYDFEKNIRMSKQDIKDEHKNAEGDPLIKSKIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + ++DAP ++AKG + +A+K++ IA
Sbjct: 252 QRQREMAMRRMMQEVPEADVVITNPTHYAIALKYDENKSDAPYVIAKGVDYMAQKIKYIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH+I + E LARSL+ I IP F+KAVA+++ +Y K
Sbjct: 312 GEHDIIMVENRPLARSLYDSAEIGDTIPEEFFKAVAEILAYVYRMK 357
>gi|187926251|ref|YP_001892596.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
gi|241665739|ref|YP_002984098.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
gi|187728005|gb|ACD29169.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
gi|240867766|gb|ACS65426.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
Length = 387
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S +++E A EG+ P SRE + F+ L + + +S
Sbjct: 1 MSEE-SDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + +T + + + + GL+L ++ S L ++
Sbjct: 60 FLARCLE-FHRYNYTSGQDQWNYVTGQFMPLA-MTLGGLMLMLVIAALSPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ +G+ R++S+ L+ + +K+ L+ + + + +++ +
Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + +D+ S Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350
>gi|304311113|ref|YP_003810711.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
gi|301796846|emb|CBL45058.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
Length = 375
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTE + +K+E A +G P SR+ S ++ I +L + + +
Sbjct: 1 MADED-GQEKTEDATPRKLEQAYEKGQTPRSRDLVAVSMLIIGGIGMLLYVEQIYRAFVT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + K+ D S ++ L + +A + ++P + I + + ++
Sbjct: 60 AFEMGF-TFDREKIFDDSAMMRALLQAAYAAGKSLLPLFATLAVVAIAASVASGGLHVSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + F++++ GIKR++S+ +LV +KS +K+ LVG + + + L I
Sbjct: 119 HPLMFKFEKLNPLSGIKRMFSLQSLVELIKSIMKVSLVGFTAWLVVKAQFAEYLGLIDEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + L +A + +D+ + Q+ +L+M+KQE+KDE K S G P
Sbjct: 179 IQQAMLHSISMVAWAFVWLSLSLALVAAIDVPYQNWQFRKQLRMTKQEVKDEYKDSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +Q+ AR MM +A ++ITNPTH+A+ALRY T+ AP LVAKG +LIA
Sbjct: 239 EIKAKQRQRAREMAFAGMMAEVPKADVVITNPTHFAVALRYDPTKGGAPKLVAKGADLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++++A +N+ I P LARS+F + IP Y AVAQ++ +YH K
Sbjct: 299 EQIKRVAIANNVVILAAPPLARSIFYHTKLFKEIPSGLYVAVAQVLAYVYHLK 351
>gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium
ljungdahlii DSM 13528]
gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium ljungdahlii DSM 13528]
Length = 606
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 97/347 (27%), Positives = 185/347 (53%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + KK D+ +G S+E L ++LA + + S+ S + L
Sbjct: 262 KDDKTEEATPKKKSDSRKKGQIARSKEIGLTMTLLASTLVIAVLGGYVGTSLGSTMVAFL 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
L + S + ++ + + +P + + G+ + ++Q ++ +KP
Sbjct: 322 NDYINTSL-NYSSVNKIMFITIWRIAIVFLPIAVPILAIGVLANMVQTRGLITFETLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G KR++S +++ +K + +VG + + +NY +L+ + ++
Sbjct: 381 FSKLNPISGFKRMFSARSVMELLKDTAIVSIVGYVGYKFIKDNYMYILNLGQLDSRAVAK 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ I L + + +LD + +Q+ L+MSKQEIK+E KQ G+P IK ++
Sbjct: 441 AIGSLAVGIFFRITLIMLIIAILDYMFQRYQYNKDLRMSKQEIKEEFKQDEGDPQIKGKR 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +AT+++TNPTH A+AL+Y + +N APVLVAKG + +A K+++I
Sbjct: 501 RQKQRELAMRRMMQEVPKATVVVTNPTHVAVALKYEEGQN-APVLVAKGLDAVALKIKEI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++++PI E LAR ++K+V I+ IP Y+AVA+++ +Y +
Sbjct: 560 AKDNDVPIIENRPLARLIYKEVEIDMEIPAEMYQAVAEILALVYKMR 606
>gi|221635443|ref|YP_002523319.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
5159]
gi|221157327|gb|ACM06445.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
5159]
Length = 363
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 1/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+TE + ++ ++A G P S + + +LA +L ++ ++ L +
Sbjct: 4 ERTERATPRRRQEARKRGQVPRSADLTSALVLLAGAFFLPWYAGAAGQTLWDYLERAFSG 63
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
R L IV L + +L +P L LF G+ S L+Q V +KP ++
Sbjct: 64 PLPRDLTGP-DIVALAWASGATVLKLALPILGLFAAVGVASTLVQAGFVFAPAVLKPDWR 122
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+ G +R++S L K+ +KI +V + + + D A P +I
Sbjct: 123 RIDPIAGFQRLFSRRGLFETGKALLKIAIVLAVTYPLIQRDLPRYADLTGAEPAAIAQAI 182
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++R + + + L +LD G+ +L+M++ E+K+E++Q+ G+P IK R +
Sbjct: 183 GQSMRDLAVRVGAAYLALAILDYGFQRWDLEQRLRMTRHELKEELRQTEGDPEIKARIRR 242
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R +MM +AT+++TNPTH A+ALRY APV+VAKG +A+++ IA
Sbjct: 243 LQRQMAMRRMMAQVPKATVVVTNPTHLAVALRYEPRSMRAPVVVAKGAGAVAERITAIAR 302
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+H IP+ LA++L++ V + IP Y+AVA +I +Y +
Sbjct: 303 QHTIPVLRNQPLAQALYRTVEVGQEIPITLYEAVADIIAYVYRLR 347
>gi|83309718|ref|YP_419982.1| flagellar biosynthesis protein FlhB [Magnetospirillum magneticum
AMB-1]
gi|82944559|dbj|BAE49423.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
Length = 355
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 201/353 (56%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+KTE P+ +K+ A +GN P S+E +++S++ L+ + F +
Sbjct: 1 MAE--DSDDKTEEPTDRKLSQAREQGNIPTSQEVKIWASLVGALVVVTLFAPYMARDIGR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + LL+ +++ +L+I +++ ++ I S + Q +
Sbjct: 59 LLLPFVEHPHAFPM-GREDVGQLLSGITVDMIKLLIMPMMMLVVLAIASAMGQSGLMFLP 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + F ++S +G++RI+S NLV F+KS K+ +G +I + L + + +
Sbjct: 118 DKLTLDFGKLSPGKGLQRIFSGRNLVEFVKSLFKVSAIGFVIFLILKSHMSEYAGLAALD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L + V ++I+++L + L D + + ++KM+KQEIKDE KQ+ G+P
Sbjct: 178 LMAVLDYLRHQVITMIIVVVLMVFVLAAADWFYQRWAFTQQMKMTKQEIKDEHKQTEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R +++ R R +MM A RA++++TNPTHYA+AL+Y Q APVLVAKG +LIA
Sbjct: 238 MIKGRLRALRMQRARQRMMAAVPRASVVVTNPTHYAVALQYDQDSMGAPVLVAKGVDLIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++R +A E+ +PI E P LAR+L+ V ++ IPP YK VA++I + K
Sbjct: 298 KRIRDLATENEVPIVENPPLARALYATVELDQEIPPEHYKTVAEIIGYVMKLK 350
>gi|212639548|ref|YP_002316068.1| flagellar biosynthesis protein FlhB [Anoxybacillus flavithermus
WK1]
gi|212561028|gb|ACJ34083.1| Flagellar biosynthesis pathway, component FlhB [Anoxybacillus
flavithermus WK1]
Length = 360
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + + +L + L F ++T
Sbjct: 13 GEKTEKATPRKRQEVRKKGQVAKSADVTAAFLMLIVFLVLSFSSGMWGDAITRLFRQSFQ 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ I + + L + LV P L + + + +Q + ++
Sbjct: 73 HYFFMDV-TIDSVQLIFVDLLQQLALLVGPIFLAAIAAALFANFVQVGFLFTTEPLQMKL 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G KRI+S+ LV +KS +K++ + + L + +L + +I
Sbjct: 132 SKLDPIQGFKRIFSLRALVELLKSILKVLFISVVTFSILWMHIDDILSLSHKSIGAIAAT 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
++ ++ + + L++ D + + + ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LGRLTIQMGLVASVALLFLSLFDYLYQRYDFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTH+A+AL+Y + + DAP++VAKG + +A+K++ IA
Sbjct: 252 QKQREMAMRRMMQEVPEADVVITNPTHFAVALKYDEQQADAPIVVAKGADYMAQKIKDIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++ I E LAR+L+ Q I IP F+KAVA+++ +Y K
Sbjct: 312 KKNDVMIVENRPLARALYDQTDIGMVIPEAFFKAVAEILAYVYKTK 357
>gi|163794129|ref|ZP_02188102.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
gi|159180743|gb|EDP65262.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
Length = 358
Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 198/353 (56%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ KTE P+ KK+ DA +G S+E + F+S+LA + + S
Sbjct: 1 MSDSQDDSQKTEEPTGKKLGDARKKGQIAQSKEVTNFASLLALTFAVTILAPYMAIQLYS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ V++ A ++ D +L L + + P L M+ G+ + L Q +
Sbjct: 61 SMAVVIEHAAVARI-DAGSTSEILMGLVIDTFLALAPTLGTVMVLGVAATLGQSGILFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P +++S G KR++S+ ++V F+K +K+ +V I + ++ + ++ +
Sbjct: 120 DPIMPKLEKLSPLAGFKRLFSLKSIVEFIKGIIKLAIVAFIAYVLMSPELDRAEELLTMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+L V ++++ +L F+A + + D + ++ Y +L+MS+Q+I+DE KQ+ G+P
Sbjct: 180 LIEVLKEIQTLVIRLMMGVLAFMAVVAIADYIYQRYEHYKQLRMSRQDIRDEHKQAEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I R R +MM A +A ++ITNPTH+A+AL+Y + APV+VAKG + +A
Sbjct: 240 QIKARLRQIRADRARRRMMAAVPKADVVITNPTHFAVALQYDTSAMAAPVVVAKGSDAVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +PI E P LAR+LF V I+ IP +YKAVAQ+I +Y K
Sbjct: 300 FRIREVAKEHKVPIVENPPLARALFASVEIDEQIPETYYKAVAQVISYVYRLK 352
>gi|52080241|ref|YP_079032.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
14580]
gi|52785618|ref|YP_091447.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
14580]
gi|319645980|ref|ZP_08000210.1| FlhB protein [Bacillus sp. BT1B_CT2]
gi|52003452|gb|AAU23394.1| flagella-associated protein [Bacillus licheniformis ATCC 14580]
gi|52348120|gb|AAU40754.1| FlhB [Bacillus licheniformis ATCC 14580]
gi|317391730|gb|EFV72527.1| FlhB protein [Bacillus sp. BT1B_CT2]
Length = 359
Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 105/346 (30%), Positives = 185/346 (53%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK ++ +G S + + ++L + LF + +
Sbjct: 12 GEKTEKATPKKRRESRKKGQVAKSADVNTAVTLLIVFLSFLFIGPFMRDRLLGLIEKYYK 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
K+ +++I L + L + ++ P LL ++ G+ S +Q + +KP
Sbjct: 72 ELITMKV-SVANIPGLFQSVVLESGLIMAPLLLTAVVSGVLSNYMQVGFLFAPEAIKPDL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K++ G KRIYSI +V +KS +KI++VG + L N+ +L + + L +
Sbjct: 131 KKLDPLNGFKRIYSIRAIVELLKSILKIVIVGGVTFAVLWLNFDKILRIPALSAGEALSY 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + + L VLD + + ++MSKQ+IKDE K++ G+P+IK++ K
Sbjct: 191 VGWLTFLMGVSAAVALIFLAVLDYLYQKFDYEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG +L+A K+R+IA
Sbjct: 251 QKQKEMAMRRMMQEVPKADVIITNPTHYAVALKYDENKMDAPFIIAKGVDLMALKIRQIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LAR+L+ QV I+ A+P F+KAVA+++ +Y K
Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKAVAEILAYVYKTK 356
>gi|45479286|gb|AAS66688.1| FlhB [Agrobacterium sp. H13-3]
Length = 374
Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 151/352 (42%), Positives = 232/352 (65%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G +
Sbjct: 16 ADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGVT 75
Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
L L Q L + LL L S + L++P +++F++FG+ S Q +P L
Sbjct: 76 LKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVLE 135
Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++P
Sbjct: 136 RVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSDP 195
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P+
Sbjct: 196 QVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDPV 255
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 256 VKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIAL 315
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K
Sbjct: 316 KIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 367
>gi|332799194|ref|YP_004460693.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
gi|332696929|gb|AEE91386.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
Length = 358
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 96/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL- 66
+ +TE + ++ + A G SRE + +L + + + ++ + +L
Sbjct: 8 EERTEKATPRRRQKARERGQVFSSRELNSALVLLGSFLLIKIVGKNFVMNIMDFFNHILT 67
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + + I + + A + P L + S +Q VL+L V P
Sbjct: 68 ETINREDIFTLEGIETFSYEILIFAGKNFAPVALGLSCICLISNYMQVGFVLSLEPVSPK 127
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+R++ EG KRI+S +L+ +KS KI +V ++ ++ + ++ N
Sbjct: 128 LERINPLEGFKRIFSRRSLLELIKSIAKITVVAYVVCTAIIKYKDLFPLMLNMNLLDASS 187
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+V + + ++ LD + ++++ + L MSKQ+IK+E K+ GNP IK+R
Sbjct: 188 LTLSIAFEVGMKAAATLLIVSALDYFYQWYEYETSLMMSKQDIKEEYKEVEGNPQIKSRI 247
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + R R +MM+ +A ++ITNPTHYA+AL Y + APV++AKG + +A+K+++I
Sbjct: 248 RQMQRQMARTRMMKDVEKADVVITNPTHYAVALAYDAALHSAPVVLAKGVDKLAEKIKEI 307
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + ++PI E +LA++L+K V I IP Y AVA+++ IY K
Sbjct: 308 ATKEDVPIVENKALAQTLYKTVEIGDIIPESLYNAVAEILAFIYSLK 354
>gi|319790410|ref|YP_004152043.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
HB-1]
gi|317114912|gb|ADU97402.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
HB-1]
Length = 347
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + KTE + ++ + A EG S++ S+ S++ + L F+ +
Sbjct: 1 MAKDPS---KTEKATPRRRQKAREEGQVLRSQDLSIAFSLVLVAVTLFFYLPFAFRELLK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +L + + + L P L+ ++ G+ S ++Q + L
Sbjct: 58 LFNYTFEELPFLELNQFVFVSLEI------LALLTFPVFLVLLVGGVLSNVVQFGFLFTL 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G +R++S+ L +KS VK+ + ++ + S
Sbjct: 112 KPLVPKLDPINPVKGFQRLFSLKTLFELVKSLVKLGFASAVGYFAVKYLTRYFTSYASFP 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
LY+ ++ +++ L + LD + ++ LKMSKQE+K+E KQ G+P
Sbjct: 172 LEVQLYYLAKSLVVLVVAFALLAVPVAGLDFLYRRWEYEENLKMSKQEVKEERKQYEGHP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+ + R +MM +A ++ITNP HYA+AL+Y + + AP +VAKG + +A
Sbjct: 232 LIKSEIRKRQRQLAMRRMMAEVPKADVVITNPEHYAVALKYERGKMYAPKVVAKGVDSVA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA EH +P+ E P LAR+L++ + IP FY+AVA+++ KIY ++
Sbjct: 292 LKIKEIALEHGVPVEENPPLARALYESCEVGDFIPEEFYRAVARILAKIYRRR 344
>gi|330828812|ref|YP_004391764.1| flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
gi|328803948|gb|AEB49147.1| Flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
Length = 376
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE P+ K+++ A +G S+E S +L+ + LL ++
Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLSAVFGLLMLKGSLATAMIK 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + + D + ++ ++ L + L + + +
Sbjct: 59 VVTMGF-TLDREQAFDPNAMIAMVPALLGELVLPLGLLFALVAIAAFIGNTLMGGMNFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++S G+KR++ + +L+ +KS K++ + L+ + +L+
Sbjct: 118 EAMMPKMSKLSPLSGLKRMFGVQSLIELVKSIAKVVFITLFAWWMLSSQFNHLLNLSMEG 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A +LI++ + + +D+ + +LKM+KQE+KDE K S G P
Sbjct: 178 FPGGIIDALELFLWMLIILCCALLPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLI 299
+K + + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG + I
Sbjct: 238 EVKGKIRQLQMQMAMRRMMGDVPKADVVITNPTHYSVALKYDAGKPGAAPKVVAKGTDEI 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA E+ IPI P+L R+++ + IP + AVAQ++ ++ K
Sbjct: 298 AMKIREIAREYEIPIMPSPALTRAIYHSTELGHEIPEGLFAAVAQVLAYVFQLK 351
>gi|254497495|ref|ZP_05110288.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
gi|254353310|gb|EET12052.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
Length = 378
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + D KTE PS+K++++A +G S++ + ++L + L F +
Sbjct: 1 MSEQNN-DEKTEQPSAKRLKEARQKGQVARSKDFNTTVALLFTAVGFLAFGKQLSDQLAL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ T + + + L + ++P L+ + + + L+ V +
Sbjct: 60 MMRHSFEFDTNVIITPVVSLERLFFLAKM-GFWALVPILIFIFVVSLAAPLVMGGWVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V+P F R+++ +G+KR+ S+ N V +KSF K +LV ++ I L T+L
Sbjct: 119 KVVQPKFSRLNVFQGLKRMVSLKNFVEMIKSFFKFVLVASVAVIVLKSQIPTLLSLAHVP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + V K +++ + + +LD+ + ++ +KM+KQE++DE K++ G P
Sbjct: 179 IETAIGSGALIVVKCFVLVAASLLLIAMLDVPFQLYEHNKNMKMTKQELRDEYKETEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+KN + + + +MM A +++TNPTHYA+A+RY + N APV+VAKG++L+A
Sbjct: 239 EVKNAIRRAQQEIAKRRMMTEIPTANVVLTNPTHYAVAIRYKEKGNKAPVVVAKGKDLVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P LAR+L+ +N+ IP Y AVAQ++ ++ +
Sbjct: 299 FQINKVAKEHEIPIISVPPLARALYFSTKLNAEIPRGLYIAVAQVLAYVFQLR 351
>gi|224373568|ref|YP_002607940.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
gi|223588472|gb|ACM92208.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
Length = 351
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 185/353 (52%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK++DA EGN P S E S F + +I ++F+ Y +
Sbjct: 1 MA---DDMEKTEDPTPKKLQDARKEGNVPKSMETSGFVVLFVAIIVIIFYLKYITYYLEK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++I + ++ +L+ L+ P L ++ GI ++Q + +
Sbjct: 58 FYMYYTSFIGVEITKNI--VFEIVLKSALNFFILLAPLLGAVVLAGILGNVMQFGFLFTV 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F++++ +GIKR++S+ LV +K +K+ + + + + +
Sbjct: 116 KPIIPKFEKINPIKGIKRLFSLKTLVEGIKMTLKVSVAFGVGAWLFMKFLEEIPKLELMS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L +D + + + L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEEKALIIISAMLAVFLVFAAIDFIYQRYSYKKSLRMSKQEIKDEYKQTEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP ++AKG + +A
Sbjct: 236 EIKAKIRQLQREMAKKRMMSEVPKADVVITNPTHYAVAIRYDKTKDEAPRVIAKGVDNLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA EH+I I E P LAR L+K V I+ IP YKAVA+++ +Y K
Sbjct: 296 LKIKEIAREHDIMIVENPPLARELYKLVDIDELIPQKLYKAVAEVLAFVYKAK 348
>gi|309778952|ref|ZP_07673722.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
gi|308922299|gb|EFP67926.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
Length = 387
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S +++E A EG+ P SRE + F+ L + + ++
Sbjct: 1 MSEE-SDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + +T + + + + GL+L ++ S L ++
Sbjct: 60 FLARCLE-FHRYNYTSGQDQWNYVTGQFMPLA-MALGGLMLMLVIAALSPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ +G+ R++S+ L+ + +K+ L+ + + + +++ +
Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + +D+ S Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350
>gi|217972629|ref|YP_002357380.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS223]
gi|217497764|gb|ACK45957.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS223]
Length = 376
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 80/340 (23%), Positives = 163/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +++ S+T + + + +
Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYMLGPSLATSLTRVFETVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + ++ + + +LL ++ + + + P ++S
Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G+KR++ + LV K K +V + L+ + ++ S + +YHA +
Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351
>gi|160876164|ref|YP_001555480.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS195]
gi|160861686|gb|ABX50220.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS195]
gi|315268360|gb|ADT95213.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS678]
Length = 376
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 80/340 (23%), Positives = 163/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +++ S+T + + + +
Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYMLGPSLATSLTRVFETVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + ++ + + +LL ++ + + + P ++S
Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G+KR++ + LV K K +V + L+ + ++ S + +YHA +
Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + + R
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI
Sbjct: 252 AQRRMMTEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351
>gi|288573010|ref|ZP_06391367.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568751|gb|EFC90308.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 364
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 85/343 (24%), Positives = 168/343 (48%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + +K EG S++ + I+A LI ++ F + S + L
Sbjct: 15 EEKTEPATPRKRRKEREEGRVAKSQDLGASAVIIAGLIAVILFGGWIFDVILSFIRECLF 74
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L L + ++P ++ + + Q V+ + P
Sbjct: 75 FIGDGTLGRTGWFHSLTMRSISAYGLAIVPMVVGCFLAAFFVSVAQVGFVMTSKPLIPKM 134
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R + G+K++ S+ +LV +K +K +++ ++ +L + M+ + +
Sbjct: 135 NRFNPISGLKKVISLRSLVEMVKGILKALILAIVLYSALRGDLADMVMAVRYPIGPAVSL 194
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + + + + + D + ++ +KMSKQEIK+E KQ G+P IK + +
Sbjct: 195 LLWRIWLLCVKMTFLLLVIAIFDWSYQKWEFEKNIKMSKQEIKEEYKQMEGDPQIKQKIR 254
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R + +MM +A ++ITNPT A+AL+Y + + DAPV++AKG+ L+A+++R+IA
Sbjct: 255 QKQREMAKQRMMADVPQADVVITNPTTLAIALQYDREKMDAPVVLAKGKGLLARRIREIA 314
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
E+++P+ E LA +L V + +IP YK+VA+++ +Y
Sbjct: 315 EENDVPVVENKPLAWALHDSVEVGESIPETLYKSVAEVLAFVY 357
>gi|253990145|ref|YP_003041501.1| flagellar biosynthesis protein FlhB [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211639018|emb|CAR67632.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781595|emb|CAQ84758.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica]
Length = 383
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K E A EG SRE S + + L L + ++
Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKEGQIARSRELSSILMLTSGLSLLWLSGQSIAHELSL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + +V + L A ++P ++ + + + V +
Sbjct: 60 MVFEGF-NFDHSMVSNDKQMVQQIGRLLRQAVWALLPVFAGLVLVALSAPALLGGLVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+++ G+KRI+S+N L K+ +K VG + L N+ +ML I+
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPSMLRLIAQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALQYDEKQMSAPKVLAKGAGIIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y K
Sbjct: 299 LRIKEMGTENRIPLLEAPPLARALYRHSEVGGHIPATLYAAVAEVLAWVYQLK 351
>gi|296330853|ref|ZP_06873328.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674371|ref|YP_003866043.1| flagellar export machinery protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151858|gb|EFG92732.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412615|gb|ADM37734.1| component of the flagellar export machinery [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 360
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D +G S + + S+L + L+ + S L
Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSADVNTAVSLLVIFLSLIAIGPFMRDRLLSFLETFYT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ KL + +++ L L + ++ P +L+ ++ G+ S +Q + + ++P
Sbjct: 72 ESLTMKLSE-ANVHTLFISLLKDTAFVLAPIMLVALVAGVVSNYMQVGFLFSAEVIQPKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYS+ +V +KS +KI +VG L +Y +L P L
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKITVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLLLAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356
>gi|241203095|ref|YP_002974191.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856985|gb|ACS54652.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 359
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 153/350 (43%), Positives = 238/350 (68%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++
Sbjct: 1 MAD-DDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPDSVGRMSE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + Q K+E ++ L L +++ LV P +LFM+FG+ S + Q +P L L
Sbjct: 60 TLRDIFEQPDQWKIETGPDVLALFVRLGWASAALVAPAFILFMVFGVASSVFQNLPTLVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++
Sbjct: 120 ERIRPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P
Sbjct: 180 PQTILVRLMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA
Sbjct: 240 FVKSRQRSLMRDRARRRMIADVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 349
>gi|83858790|ref|ZP_00952312.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
gi|83853613|gb|EAP91465.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
Length = 358
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 106/352 (30%), Positives = 178/352 (50%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ +K+ A EG+ P S+E S + ++ A L L F + ++
Sbjct: 1 MAEGEDKSEKTEEPTDRKLRQAREEGDVPKSQEVSGWFTLTAGLAMLAFLAPGMVTNLAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L V LA + + D + V L ++ +V ++ I L+Q +
Sbjct: 61 MLLVFLAQPHELAV-DPTGAVTLAAATAMRLVLVVGLAFATLLVAAIFGNLVQTGVMFTP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G+ R++ +NF K K+ +VG I L +
Sbjct: 120 KKIAPKLDKLDPIKGLTRMFGPEGWMNFFKGVGKMTIVGLAIAAVLWPRRNELAVLPGVA 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P IL + +++I L+ + VLD + Q+ + KMS++EI+DE+K + G+P
Sbjct: 180 PIGILQEVYSAAIQLMIAALIAYTAIAVLDFLFQRKQYIDRHKMSRKEIRDEMKDTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+I+ + + I + R + +MM A ++ITNPTHYA+AL Y Q AP+ VAKG + +A
Sbjct: 240 MIRAKLRQIRQERAQRRMMARVPDAAVVITNPTHYAVALEYEQGRTPAPICVAKGTDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R +A EH+IPI E+P LAR LF V + IPP + AVA++I +
Sbjct: 300 LRIRALAEEHDIPIVEDPPLARGLFASVELEEVIPPEHFTAVAKIIGYVLML 351
>gi|23099029|ref|NP_692495.1| flagellar biosynthesis protein FlhB [Oceanobacillus iheyensis
HTE831]
gi|22777257|dbj|BAC13530.1| flagella-associated protein [Oceanobacillus iheyensis HTE831]
Length = 359
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK D +G S++ + +L C I L F S + +T
Sbjct: 12 GEKTEKATPKKRLDERKKGRVAKSQDVNTALLLLGCFIALFVFGSYMLQYMTGFFEKSFT 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L + ++ + SL A ++ P +++ ++ G+ + L+Q + + +K
Sbjct: 72 EYIHWDLTE-KNVQLMFNSASLDAGMMLAPIMIIAIITGMAANLVQVRFLFSTEPLKFDL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K++ +G KRI+SI LV F+KS +KI+ VG + + ML + L
Sbjct: 131 KKIDPIQGAKRIFSIRALVEFLKSMLKIVFVGIVTFYVIWIFKDDMLMTAFLDAKGALGF 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ ++ + L + D + + ++MSKQ+IKDE K G+P+IK++ K
Sbjct: 191 FATVTAIMGFAAIILLVFLALFDYWYQKFDFEKNIRMSKQDIKDEYKNVEGDPLIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM A +IITNPTHYA+A++Y +++ +AP ++AKG + IA+K+++IA
Sbjct: 251 EKQRQMATRRMMSEVPNADVIITNPTHYAVAIKYDESKANAPYILAKGTDQIAQKIKEIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H++ + E LAR L V I IP +++AVA+++ +Y +
Sbjct: 311 KNHDVIMVENRPLARGLHDAVEIGEIIPEAYFQAVAEVLAYVYRME 356
>gi|71906378|ref|YP_283965.1| flagellar biosynthesis protein FlhB [Dechloromonas aromatica RCB]
gi|71845999|gb|AAZ45495.1| Flagellar biosynthetic protein FlhB [Dechloromonas aromatica RCB]
Length = 379
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 104/352 (29%), Positives = 178/352 (50%), Gaps = 3/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ ++IE A +G P SRE + F + S +
Sbjct: 3 MAE-DSDLEKTEEPTGRRIEQAREQGQVPHSRELATFLVLAVAGATFWMMGSWFMQRSLV 61
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D ++ L +S A + P L L ++ I V +
Sbjct: 62 IMQKGFFVESRY-MRDPDLMLPRLAEISGDALFVFSPLLGLLLLAAILPPFFLNAWVFSP 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G R++S N+L+ K+ +K +LVG + + + + + +
Sbjct: 121 KALVPDLNRLNPLSGFGRMFSWNSLMELAKAVLKAVLVGGVAAMLIWKERDEIFGLLGEP 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L HA V ++++ + + V D+ + Q++ KLKMSK+E+K E+K+ G+P
Sbjct: 181 LEVGLAHAGHLVSFSFLILVATLVLVVVADVPFQLWQYFDKLKMSKEEVKQEMKEMMGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+ R +MM A +A +++TNPTHYA+AL Y AP +VAKG +A
Sbjct: 241 HVKGRIRSLQMQAARKRMMSAVPKANVVVTNPTHYAVALAYQTG-MGAPKVVAKGVGAVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+++IA EH +PI E P LAR+L+K +++ IP Y AVA+++ IY
Sbjct: 300 LKIKEIANEHAVPIMEAPPLARALYKHSELDTEIPSALYNAVAEVLAYIYQL 351
>gi|332305672|ref|YP_004433523.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173001|gb|AEE22255.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 374
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ KTE P+SKKI D+ +G S+E S ++ + ++
Sbjct: 2 SDANEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYLVTQR 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ ++ + D +H+ + + V+ +++ GI +
Sbjct: 62 TF-TLSRDETYDFTHMFQAWGSAIETVAGPVMLYMVIITAAGIYGNIALGGYNFTWQGAA 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +++ G KR++ +N LV +K+ K+I+V + I++ L
Sbjct: 121 PKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYIAMLVFKDEALHLDLELYPQN 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L+HA + +M+ + + D+ + ++ ++KMSKQE+KDE K + G+P +KN
Sbjct: 181 LFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDPQVKN 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R + + ++MM+ A +++TNPTHY++AL+Y Q APVLVAKG + +A +R
Sbjct: 241 RIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMAMHIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
KIA H +PI P LAR+++ + S IP + AVAQ++ ++ K
Sbjct: 301 KIADAHEVPIVASPMLARAIYYSTEVESEIPTQLFMAVAQILAYVFQLK 349
>gi|70729046|ref|YP_258780.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf-5]
gi|68343345|gb|AAY90951.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens Pf-5]
Length = 378
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL + +
Sbjct: 1 MAESESGQDKTEEPTEKRKKDSREKGEIARSKELNTLAIMLAGAGGLLVYGGGLALDLLE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S + L + L H A V P LL ++ + + +
Sbjct: 61 IMRLNF-SLPREVLLSPGAMGLYLLHSGKIAILAVQPVLLTLLLAAVIGPISLGGWLFAG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S L+ +K+ K LV + L+ + +L
Sbjct: 120 KSLAPKFSRMNPANGLKRMFSPTALIELLKALAKFALVLFVALSVLSADIDDLLRIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + +D+ +Q + KL M+KQE++DE K G P
Sbjct: 180 LEKAIIHSIQVVGWSTLWMACGLILIAAVDVPVQLYQAHKKLLMTKQEVRDEHKDQEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM A A ++ITNPTHYA+AL+Y + APVL+AKG + +A
Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDAEKGGAPVLLAKGSDFLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA H + + E P+LARS+F + IP Y AVAQ++ +Y +
Sbjct: 300 LQIREIAVAHEVMLLESPALARSIFYSTELEEEIPAGLYLAVAQVLAYVYQIR 352
>gi|224826341|ref|ZP_03699443.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
gi|224601442|gb|EEG07623.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
Length = 388
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 83/354 (23%), Positives = 174/354 (49%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TEA + ++++ A EGN P SRE S F+ + + L+ +
Sbjct: 1 MAE-DSDLERTEAATGRRLQQAREEGNIPRSRELSTFAVTMTGVALLMAMGERLGNFMLQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ ++ ++P + + + L+ L
Sbjct: 60 LMRRLF-TFDHDMVQHTDPVLLRFKESLTDTLLQLMPLFGGLALVAVAAPLLVGGWNLTF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ GI+R++S++ L +K+ +K +++G + T + ++ I+
Sbjct: 119 KGIEPKLSKLNPAHGIQRMFSLSALTEALKAILKSVVIGGVATWVIWNERAELIGLIAMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++++ + L V+D+ + ++ +L+M+K+E+K E K+ G+P
Sbjct: 179 LETALGKMMQLTFHTFLLVVGAMLLLVVVDVPFQIWNYHKQLRMTKEEVKQEYKEQEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM+ A +I+TNPTHYA+AL+Y + AP ++AKG+ +A
Sbjct: 239 EVKGRIRQLQRQAAQRRMMQEIPSANVIVTNPTHYAVALKYTEG-MRAPQVIAKGRLKLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+K+ EH + + PS AR+L+ + +P Y A AQ++ +Y K+
Sbjct: 298 EKIIDTGREHRVTVMRVPSFARALYFHSELGEEVPSRLYGAAAQILAYVYQLKL 351
>gi|15964403|ref|NP_384756.1| flagellar biosynthesis protein FlhB [Sinorhizobium meliloti 1021]
gi|307311545|ref|ZP_07591186.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
gi|307318900|ref|ZP_07598331.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
gi|17380369|sp|O54243|FLHB_RHIME RecName: Full=Flagellar biosynthetic protein flhB
gi|15073580|emb|CAC45222.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
meliloti 1021]
gi|306895314|gb|EFN26069.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
gi|306899562|gb|EFN30191.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
Length = 360
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 156/350 (44%), Positives = 243/350 (69%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++
Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L
Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350
>gi|227820846|ref|YP_002824816.1| flagellar biosynthesis protein FlhB [Sinorhizobium fredii NGR234]
gi|227339845|gb|ACP24063.1| flagellar biosynthetic protein FlhB [Sinorhizobium fredii NGR234]
Length = 360
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 158/350 (45%), Positives = 242/350 (69%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ D+KTEAPS KK+ DA +GN P SRE + F+S LA I+++FF S G S
Sbjct: 1 MSDDQDKDSKTEAPSEKKLSDAAEKGNVPFSREVTAFASTLAVYIFIVFFLSDGAASTAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + +LE + V L++H+ L ++ LV+P +L ++FG+GS + Q +P L
Sbjct: 61 ALKDIFEQPEAWRLETATDAVGLISHVVLKSAGLVLPVFVLLIIFGVGSSIFQNLPRPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P+ RVS G KRI+ + LV F KS KII+V I+ + L +YF LD + ++
Sbjct: 121 DRIMPNMNRVSPIAGFKRIFGVPGLVEFAKSLFKIIVVSIIVVLVLWNDYFATLDLMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +I +++++ ++LL A L ++D+ W+ H WYS+LKM+KQE+K+E+KQS G+P
Sbjct: 181 PVTIFATMISDLKQIVTVVLLATAVLAIVDLFWTRHHWYSELKMTKQEVKEELKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+ R R R +M+ + RAT++I NPTHYA+ALRY++ E+DAPV+VA GQ+L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMIASVPRATLVIANPTHYAVALRYVREESDAPVVVAMGQDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350
>gi|109899339|ref|YP_662594.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
T6c]
gi|109701620|gb|ABG41540.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
T6c]
Length = 374
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ KTE P+SKKI D+ +G S+E S ++ + ++
Sbjct: 2 SDANEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYLVTQR 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ ++ + D +H+ + + V+ +++ GI +
Sbjct: 62 TF-TLSRDETYDFTHMFQAWGSAIETVATPVMLYMVIITAAGIYGNIALGGYNFTWQGAA 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +++ G KR++ +N LV +K+ K+I+V + +++ L
Sbjct: 121 PKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYVAMLVFKDEALHLDLELYPQN 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L+HA + +M+ + + D+ + ++ ++KMSKQE+KDE K + G+P +KN
Sbjct: 181 LFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDPQVKN 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R + + ++MM+ A +++TNPTHY++AL+Y Q APVLVAKG + +A +R
Sbjct: 241 RIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMAMHIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
KIA H +PI P LAR+++ + S IP + AVAQ++ ++ K
Sbjct: 301 KIADAHEVPIVASPMLARAIYYSTEVESEIPAKLFMAVAQILAYVFQLK 349
>gi|254517020|ref|ZP_05129078.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
gi|219674525|gb|EED30893.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
Length = 384
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E +TE P+ ++ E+A +G P SRE + S+L + L + ++ +
Sbjct: 1 MAEEQTGQERTEQPTERRKEEARRKGQVPRSRELNTMLSLLITGVGLWVLGGGLVDNLLA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
S + + D + H+ +SA + P + ++ + LI +L
Sbjct: 61 ITSAGF-SVDRAAVFDTQQLPVHFMHMVISALLALAPLFAVTVVAALAGPLIMGGWSFSL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +++ +G+ R++S+ L K+ +K +L+ + + + +L +
Sbjct: 120 EAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMGVAYLMIMSFERQILTLSALT 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + LI++ + + + D+ + + +L+M++QE++DE+K++ G P
Sbjct: 180 PGEASARVVTMLVTALIILSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM+ A ++ITNPTHY++AL Y AP +VAKG++LIA
Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHYSIALSYSDGS-GAPRVVAKGRDLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA EH +P++E P LAR+L+ + IP Y AVA+++ ++ +
Sbjct: 299 LQIRTIAQEHEVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351
>gi|251797425|ref|YP_003012156.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
gi|247545051|gb|ACT02070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
Length = 365
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK ++A +G S + +L S + S L
Sbjct: 14 SQEKTEKATPKKTQEARKKGQIAKSNDLPSSMILLFTFATFAALGSYYKTRIMSVFQELF 73
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + ++I+ L L++ + P + ++ I ++Q +L +KP
Sbjct: 74 DNWLTMDVTT-ANIMPLFDKLAVDMLMFLAPIFAIVVIVAILGNVVQFGFLLTGESLKPK 132
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G K+I+S+ +V F+KS +K++++G ++ ++ ++ +L S + I
Sbjct: 133 FSKLNPINGFKQIFSMRTVVEFLKSILKLLIIGILVYRAIWSDWDKILVLSSLSVQQIFS 192
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
K+ + + L D + ++ L+MSKQ+IKDE K+S G+P+IK +
Sbjct: 193 FTAGLTVKLGLETGAVLVILAFADYMYQRYEHAKSLRMSKQDIKDEYKKSEGDPLIKGKI 252
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A ++ITNPTH+A+AL+Y ++ +AP+++AKG + +A ++R++
Sbjct: 253 RERQRRMAMQRMMQEVPKADVVITNPTHFAIALQYDASKMEAPLIIAKGMDHLALRIREV 312
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH + + E LAR+L+++ I +IP ++AVA+++ +Y K
Sbjct: 313 AKEHGVVMMENKPLARALYERADIGDSIPADLFQAVAEVLAAVYKMK 359
>gi|126175115|ref|YP_001051264.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS155]
gi|125998320|gb|ABN62395.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
Length = 376
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 80/340 (23%), Positives = 161/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ ++IE A +G S+E + +++ S+T + + + +
Sbjct: 13 PTGRRIEQAREKGQIARSKELGTAAVLISAACGFYMLGPSLATSLTRVFETVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + ++ + + +LL ++ + + + P ++S
Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V + L+ + ++ S + +YHA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + +
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQHEL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351
>gi|291288733|ref|YP_003505549.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
12809]
gi|290885893|gb|ADD69593.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
12809]
Length = 352
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK+ DA NEGN SRE ++L + ++ ++ +
Sbjct: 1 MADE---QEKTEDPTGKKLTDAKNEGNVAKSRELPAAVTLLLVTFFFYYYGPYLMHGLAR 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + +H + L + + +++L+ P + L ++ G+ S ++Q +
Sbjct: 58 LIREIFMMTNYEINTQSAHKIMLFS--IIESAKLLAPFMALVLVVGVASNVLQTGFMFTP 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +R+ +G R +S +LV MKS K+ +V + + + ++ T++ +
Sbjct: 116 KALSAKLERIDPIKGFGRFFSKKSLVELMKSLFKVFVVTYVAYLIVKKHIVTIISMADMD 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ I V +++ + L + + D + +Q+ LKMSK E+K+E KQ+ G+P
Sbjct: 176 FYDIFSVFGKIVYEIMWKVSLLALFMALADFIFQKYQFKQDLKMSKHEVKEERKQAEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +SI R R +MM+ ++ +++TNPTH+A+AL+Y E+ APV++AKGQ L+A
Sbjct: 236 HVKGRIRSIQREMARKRMMDDVPKSDVVVTNPTHFAVALKYSPGEDRAPVVMAKGQRLMA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++IA + I + E+P +ARSLFK V I IP YKAVA+++ + K
Sbjct: 296 LRIKEIAKQSGILVHEDPPIARSLFKTVDIGDEIPENLYKAVAEILALVDKFK 348
>gi|317129190|ref|YP_004095472.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
2522]
gi|315474138|gb|ADU30741.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
2522]
Length = 359
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +++ +G S + + +L + S + +
Sbjct: 12 QEKTEKATPKKRKESRQKGQVSKSSDVNTSFILLFVFLAFWLMGSFSVDQLIGITRYSFQ 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+L + +++ + + S+ A+ +V P + + M+ I S +Q + +K
Sbjct: 72 EYLLMELTE-ANVYSMFINFSIQAAIVVGPFMFIAMLAAIFSNYLQVGILFAPEAIKMKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G KRI+S+ LV F+KS +KI+ VG + +L + +
Sbjct: 131 SKLDPIQGAKRIFSVRALVEFLKSLLKIVCVGFAGFTVIWIAIDDILMLSLYSVGESVRL 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + + L+V D + + +KMSKQ++KDE K++ G+P+IK++ K
Sbjct: 191 IGNLLIMMGLAVAFLLIFLSVFDYLYQKYDHEKNIKMSKQDVKDEYKKTEGDPLIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM +A ++ITNPTHYA+AL+Y AP++VAKG + IA K+ IA
Sbjct: 251 EKQRQMAMSRMMAEVPKADVVITNPTHYAIALKYDDQNMAAPIIVAKGVDFIALKVINIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+N+ E LAR+L+ Q I +P +KAVA+++ +Y
Sbjct: 311 KNNNVMTVENRPLARALYAQADIGDPVPEDLFKAVAEVLAYVYRI 355
>gi|163758003|ref|ZP_02165091.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
gi|162284292|gb|EDQ34575.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
Length = 363
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 151/350 (43%), Positives = 232/350 (66%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTE P+ KK+ DA+++GN P SRE +F+SIL L++L+FF T+
Sbjct: 1 MAEGEDKDSKTEEPTEKKLRDAIDKGNIPFSREVPIFASILGTLLFLVFFLPSAASRFTN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + +LE V L L + A +++P L M FGI + ++Q +P L
Sbjct: 61 SLRDLFEQSDDWRLETGGDAVALFQSLFIEAGVVMVPAFALLMGFGIAASVLQNMPSPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P +R+S+ +G RIY I +V F KS KII V ++I++ + +F LDF+ +
Sbjct: 121 DRIQPKLERISIVKGFGRIYGIKGMVEFAKSMFKIIAVSLFVSIAMKDEFFRSLDFMFMD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ KV+ ++L+ A L VLD+ W+ + W++ KMSKQ+IKDE+KQS G+P
Sbjct: 181 PTLVVPDMARIAAKVVAVVLISTALLAVLDVLWTRYSWHNDQKMSKQDIKDELKQSDGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K RQ+S+AR R R +M+ RAT++I NPTH+A+ALRY++ E APV++AKGQ+LIA
Sbjct: 241 IVKARQRSLARDRARRRMIAEVPRATMVIANPTHFAVALRYVREEGGAPVVIAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R++A H IP+FE+P LARS+F QV +++ IP VFYKAVA+L+++IY
Sbjct: 301 LKIREVAEAHGIPVFEDPPLARSMFAQVSVDNFIPAVFYKAVAELVHRIY 350
>gi|2916784|emb|CAA11951.1| flhB protein [Sinorhizobium meliloti]
Length = 360
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 156/350 (44%), Positives = 243/350 (69%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++
Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L
Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVSILLILFGVGSSIFQNLPRPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLQQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350
>gi|285018167|ref|YP_003375878.1| flagellar biosynthesis pathway component flhb protein [Xanthomonas
albilineans GPE PC73]
gi|283473385|emb|CBA15890.1| probable flagellar biosynthesis pathway component flhb protein
[Xanthomonas albilineans]
Length = 376
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEN+ +TE P+ K++ + +GN P SRE + + + + L+ +
Sbjct: 1 MSENEEGAERTEQPTEKRLRETREQGNIPRSRELATAAVFSSSIFALMGMSGSLTAGAVA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L + +V+P + + + G + L+ +
Sbjct: 61 WMKHAL-QPDPHLRDTPQALFGYFGDLLIGLFWVVLPLIGICVAAGFIAPLLMGSLRFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+ R+Y +LV +KS +++ VG + + + + +
Sbjct: 120 QALIPKLDRLNPMAGLARLYGTESLVELLKSMLRMGFVGGAAFLCIWKGLDGLRGLLQQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H +L+ +A L +D + + +KLKM+++E++ E+K++ G+P
Sbjct: 180 LEQAIGHGLGFTLSMLLYTAGALALLAAIDAPYQKWHYINKLKMTREEVRREMKENDGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y AP ++AKG + IA
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEAVPKADVVVVNPTHYAVALKYESGRMRAPTVLAKGVDEIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ +H + + P LAR+L+++ + IP Y AVAQ++ +Y +
Sbjct: 300 FRIREVGEQHRVAVVSAPPLARALYREGQLGKEIPVRLYSAVAQILSYVYQLR 352
>gi|154253017|ref|YP_001413841.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
DS-1]
gi|154156967|gb|ABS64184.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
DS-1]
Length = 359
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTE P+ +K+E+A +G+ S+E S + ++ + S+
Sbjct: 1 MADQDDS-EKTEEPTHRKLEEAHKKGDLVKSQEVSTWFVMIGGATAIALMAPSTASSLMG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L V LA + D H+ + ++ SA +I L + + + +LIQ PV
Sbjct: 60 SLTVFLAQPETIPM-DAEHLRRIWLNVGSSAFMSMIGPLAVLVGAALVGHLIQHAPVFTA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++KP ++S +EG++R++ +L+N K +K+ +VG++ + + + ++
Sbjct: 119 ENMKPKLSKISPKEGLQRLFGPKSLMNLAKGILKLTIVGSVSVLIIWPERDRLALMMTWE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+L K+ ++ + + LD + QW K +MS QE+KDE KQ G+P
Sbjct: 179 IAQLLPLVQMLALKMFAGVIAVMTVVAALDYLFERMQWMKKQRMSIQEVKDEYKQMEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + I R R +MM A AT+IITNPTHYA+AL+Y Q APV+VAKG + +A
Sbjct: 239 TVKAKLRQIRAERGRKRMMAAVPTATVIITNPTHYAVALKYEQG-MGAPVVVAKGVDAVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +PI E P LAR+L V I+ I P YKAVA++I + K
Sbjct: 298 FRIREVGQEHEVPIIENPPLARALHATVDIDQEIQPEHYKAVAEVIGYVMRLK 350
>gi|116250471|ref|YP_766309.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
viciae 3841]
gi|115255119|emb|CAK06193.1| putative flagellar biosynthetic protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 365
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 151/347 (43%), Positives = 235/347 (67%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + +T L
Sbjct: 9 DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPESVGRMTEMLR 68
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E ++ L + +++ LV P +LFM+FG+ S + Q +P L +
Sbjct: 69 DIFEQPDQWKIETGPDVLALFVRIGWASAALVAPAFILFMVFGVASSVFQNLPTPVLERI 128
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++P +
Sbjct: 129 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 188
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 189 ILVRMMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 248
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 249 SRQRSLMRDRARRRMIANVDRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 308
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 309 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 355
>gi|218133682|ref|ZP_03462486.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
43243]
gi|217991057|gb|EEC57063.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
43243]
Length = 386
Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats.
Identities = 90/357 (25%), Positives = 176/357 (49%), Gaps = 5/357 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE P++KK+ DA EG S+E +LA + + F+ +
Sbjct: 20 AKDGPGGEKTEVPTAKKLNDARKEGQVAKSKEIITALMLLALFVVIKFYIGNLGQQMIEC 79
Query: 62 LHVLLASATQRKLED-----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ + +++ + +++P + L ++ I +Q+
Sbjct: 80 FSEFYDLFGKIISNSEYGMRMVDATGVVSLGLTTVLNMIVPFIALAVVIAILGNALQQKW 139
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
++ ++P ++S G+KR++++ L KS I ++ +I ++ + + F
Sbjct: 140 MVTTKPLQPKLSKISPISGLKRMFNVKQLFEVGKSVAMIAVMSYVIYTTVKDKLGVLYTF 199
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ + + L + + I I + +D+ + H++ +KM+KQE+KDE K +
Sbjct: 200 YNISLYEALEIVGDIIVDLGIKISAVFLVIGFVDLIYQRHKFKEDMKMTKQEVKDEFKNT 259
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P +K + + + R +MMEA +A ++ITNPTH+A+AL+Y + APV++AKG
Sbjct: 260 EGDPQVKGQIRRRMQQVSRRRMMEALPQADVVITNPTHFAVALKYEANKGQAPVVIAKGA 319
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A ++ A E+ I I E LAR L+ V I + IPP Y+AVA+++ +Y K
Sbjct: 320 DYLAFDIKAKAKEYGIEIVENKPLARILYNNVEIGAQIPPELYQAVAEVLAFVYSLK 376
>gi|149908444|ref|ZP_01897107.1| flagellar biosynthesis protein [Moritella sp. PE36]
gi|149808607|gb|EDM68542.1| flagellar biosynthesis protein [Moritella sp. PE36]
Length = 376
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D +TE + KK+ A +G S+E + + A L F ++
Sbjct: 1 MAEKD-GQEQTEDATEKKLTQAREKGQVVRSKELATTFVLTATGAAFLAFGDALARALVI 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ L + + ++ +++ + +++ GI ++ V +
Sbjct: 60 NMTSLF-QLEREDIFSPDALLEIVSVSIKPLFWPMFGIMIVGFFAGIIGNILMGGMVFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P ++S + G+KR+ +V +KS K+ +V TI + L + +++F
Sbjct: 119 ESIRPKASKMSPKAGLKRMMGPQAMVELIKSIAKVAVVVTIALLVLKVQFLQIMEFSLQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + V I + + + +D+ + Y + +L+M+KQE+KDE+K GNP
Sbjct: 179 LNISIIQSLNFLTDVFIWLCASLIIIVAIDVPYQYWKHAKELRMTKQEVKDEMKDVNGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + +MM A +IITNPTHY++AL+Y ++ N AP +VAKG + +A
Sbjct: 239 QLKGKIRQMQMEISQRRMMGDVPDADVIITNPTHYSVALKYEKSGNAAPKVVAKGVDQVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EH +PI E +L R+++ I+ IP + AVAQ++ +Y +
Sbjct: 299 FRIREMAKEHKVPILESAALTRAIYHSTEIDDPIPEGLFIAVAQILAYVYQLE 351
>gi|222053619|ref|YP_002535981.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
gi|221562908|gb|ACM18880.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
Length = 354
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 191/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D +KTE P++KK+ +A +GN P SR+ + S+ + +I L + S
Sbjct: 1 MSEED-KHSKTEQPTNKKVSEAKEKGNIPRSRDLTSTLSLTSGIIALYVTGGFMASKLKS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ AS + ++ + I L+ L L+ + ++ P LL+ ++ + + + Q +
Sbjct: 60 SSAEIFASLSTKEFTEAG-IYMLMLKLFLTMTLVLAPFLLIVIVASLAAEVSQGGISTSF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +++ GIKR+++ + +V +KSF+KII+VG + + + +++ + +
Sbjct: 119 EKIGFDLDKLNPVHGIKRLFNKDAVVEMLKSFLKIIIVGYMAYKVMRDEVDSVIYLVDMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+I K++I + L VLD+ + ++ LKM+KQE+KDE K + G+P
Sbjct: 179 IPAIAEFVSHISFKLVIHTCGVLFILAVLDLAFVKWRFIENLKMTKQEVKDENKDAEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + K + R +M A +++TNPTH+A+AL+Y + + APV++AKG + +A
Sbjct: 239 HIKGKIKQKQYDQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA E NI + E LAR LF QV IP Y AVA+++ +Y K
Sbjct: 299 QKIKEIARESNITLVENRPLARELFAQVKEGEEIPEALYAAVAEILAYVYKLK 351
>gi|291562038|emb|CBL40854.1| flagellar biosynthetic protein FlhB [butyrate-producing bacterium
SS3/4]
Length = 357
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 184/347 (53%), Gaps = 2/347 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ KTE P++KK DA EGN SR+ + + + + + + +
Sbjct: 3 QSGQEKTEQPTAKKRRDARKEGNIFQSRDVATVVILAGIFFGIRIWLPFIYGQMKNYMTW 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
++ A + + +S + +T + +P LLL ++ GI ++ +Q ++ ++
Sbjct: 63 VIDGAARSSEDMLSASLVFVTLSVF--LKCALPLLLLALLLGIVAHGVQTRFNVSFKSIR 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P + R++ GIKR++S+ N V +K+ +KI L+ ++ L ++ M I NP +
Sbjct: 121 PKWNRLNPLSGIKRLFSMKNAVELVKNSIKITLLLVLLYNILKQDLQPMASMIDMNPAAS 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ + +LI + + + D + ++ +L+M+KQE+KDE KQ+ GNP IKN
Sbjct: 181 AAYMMKMIFDLLIRVCIAFMVIAFGDYLYQRWEYEKELRMTKQEVKDEYKQTEGNPEIKN 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R KS+ R +MM+ +A +II NPTH A+AL+Y ++APV++AKG + +A ++
Sbjct: 241 RIKSLQRQMASSRMMQKVPQADVIIRNPTHVAIALKYDPDHDNAPVVLAKGLDELALRIV 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+ E+N+ E LAR+++ ++ IP FY AVA+++ +Y
Sbjct: 301 KVGEENNVYTIENKPLARAMYNSCELDRPIPSEFYTAVAEILVYLYK 347
>gi|301165899|emb|CBW25472.1| flagellar biosynthetic protein [Bacteriovorax marinus SJ]
Length = 361
Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 2/354 (0%)
Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+ END+ KTE PS+ +IE+ G S+E + + L+ L Y V
Sbjct: 2 MADENDSDAEKTEDPSAHRIEEFRKRGEVASSKELTSVLVLAGSLMTLGLSMVYM-YEVL 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
S+ L + ++ L + + V P L+ + G+ + + Q + +
Sbjct: 61 SEFIEWLYHLDVSTAYTAKSMNTIVNKLVTVSLKSVAPIFLVTLSIGVAANMAQIGVLFS 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++ R++ +GIKR++S+ +LV +K K I + I+ L + T F
Sbjct: 121 PDVLEWKPDRINPLQGIKRLFSMKSLVEAIKGVFKFIFILGIVYFFLKDEMHTFGGFFHL 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + + ++ I++ + + + D + + KL M+K+E K E KQ GN
Sbjct: 181 DFFQSFLYGKGFLIRLGFAIVVGLIVIAIGDFAYQKFSYKKKLMMTKEEAKQEHKQQDGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK R +++ R + ++M +A +I+TNPTH ++AL+Y +P ++AKG +++
Sbjct: 241 PEIKQRIRAVQREMSQRRVMSEVPKADVIVTNPTHISIALKYDPETMISPEVIAKGADVL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA H+IPI E LAR L+K V +P YKAVA+++ Y K
Sbjct: 301 ALKIREIAKGHDIPIVENVPLARGLYKTVKEGQGVPRNLYKAVAEVLAFTYKLK 354
>gi|300694355|ref|YP_003750328.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
gi|299076392|emb|CBJ35708.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
Length = 389
Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE+ S +++E A EG+ P SRE F + L + + +S
Sbjct: 1 MSE-DSDLEKTESASPRRLEQAREEGDVPQSRELVSFVLLAVAAGGLWVMGESIVRTASS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + +V+ GL+L ++ S L ++
Sbjct: 60 FLARCLE--FHRYDYTRAQAQWQYVGAQFGPLAMVLAGLMLMLVLASLSPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ L+ + K+ LVG + + ++ +
Sbjct: 118 KPLTPDISRLIGLHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDAFVELPRGD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +L+A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADLVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHRIPVLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350
>gi|257095372|ref|YP_003169013.1| flagellar biosynthesis protein FlhB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047896|gb|ACV37084.1| flagellar biosynthetic protein FlhB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 379
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 99/352 (28%), Positives = 168/352 (47%), Gaps = 3/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +TE S++++E A EG P SRE F ++ F + + +
Sbjct: 1 MAEE-SDLERTEPASARRLERAREEGQVPRSREVGAFLILIVAAAAFWFIGPWMVQRMAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA + ++ L LS A V P + ++ + S +
Sbjct: 60 VFRRGLA-FDHGLTREPQLVLVRLADLSADALLSVAPLFVALLVAALLSPFFVGSWNFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+ +G+ R+ S + L +K+ K +LVG + L +L + +
Sbjct: 119 KALQPDLSRLDPLKGLSRLVSWSGLAELVKAVAKALLVGGVAVGVLWSERGDLLAMFAQS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A + + I+ + + +D+ + Q++ KLKMS+QE+K E K+ GNP
Sbjct: 179 GQLGLVSAGHLLSFSFLAIVSAMLLIVAIDVPFQLWQYHDKLKMSRQEVKQESKELEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R R +MM A A +I+TNPTHYA+AL Y AP ++AKG +A
Sbjct: 239 EIKGRIRQLQREAARKRMMAAVPAADVIVTNPTHYAVALAYSSG-MRAPKVLAKGMGEVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R++ E+ IP+ E LAR+L + V ++ IP Y AVA+++ +Y
Sbjct: 298 LKIRQVGAENGIPMIEAAPLARALHRHVELDREIPAGLYAAVAEVLAYVYQL 349
>gi|153001439|ref|YP_001367120.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS185]
gi|304409946|ref|ZP_07391565.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
gi|307302341|ref|ZP_07582099.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
gi|151366057|gb|ABS09057.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS185]
gi|304351355|gb|EFM15754.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
gi|306914379|gb|EFN44800.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
Length = 376
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 77/340 (22%), Positives = 161/340 (47%), Gaps = 1/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+ +++E A +G S+E + +++ S+T + + + +
Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYMLGPSLATSLTRVFETVF-TMDRAQ 71
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ D + + ++ + + +LL ++ + + + P ++S
Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G KR++ + LV K K +V + L+ + ++ S + +YHA +
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+ I++ I + V+D+ + +LKM+KQE+KDE K + G P +K+R + +
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKSRVRQMQHEL 251
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
+ +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA H+I
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIARAHDIA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I P LAR+++ ++ IP + AVAQ++ ++ +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351
>gi|329897646|ref|ZP_08272170.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC3088]
gi|328921095|gb|EGG28504.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC3088]
Length = 383
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 176/352 (50%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+END+ KTE P++K+I+ + ++G S+E S+ ++++ ++ F I ++
Sbjct: 1 MAENDSTQEKTEEPTNKRIQKSRDDGQVARSQELSIAATVITVAGFMYLFGGAMIIKISE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + D+S + + + A +V P + + +
Sbjct: 61 QFAAAFV-FDPKHVFDVSGLTSRVGKGLMDALLVVAPLGAAAFVVSFLVSGVLGGYNFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++ + + +F K+ K +LVG + + + ++ N
Sbjct: 120 KAIAPKASKLNPLSGLKRMFGMKVVFDFFKTIGKFLLVGGLTYLLVDNYVGQLMFTSLMN 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++ L + + ++D + ++ KLKM+KQE+K+E K + G P
Sbjct: 180 FEGGLALGGSIIVFSFLVATLALIIIAMIDAPYQLQEYNKKLKMTKQEVKEEAKDTDGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R +M+EA + A ++ITNP H+A+AL Y T + P LVAKG + IA
Sbjct: 240 EVKQRIRQKQRELASMRMLEAIADADVVITNPEHFAVALAYDPTGDLPPKLVAKGSDFIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+K+R+ A E +P+F P LARSLF +N IP Y+AVAQ+I I++
Sbjct: 300 EKIRERAKEEGVPLFTSPILARSLFFTTDLNGYIPEPLYEAVAQVIAFIFNI 351
>gi|118589950|ref|ZP_01547354.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
gi|118437447|gb|EAV44084.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
Length = 357
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 132/351 (37%), Positives = 202/351 (57%), Gaps = 1/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D D+KTE P+ KKI DA+ +GN P+SREA + ++ +A L+ F + +
Sbjct: 1 MSEED-KDSKTEEPTEKKISDAIEKGNTPVSREAPVLATFIATLLIGSFVITSASRQLIQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL + L + + + L +S+ + P + L G+ S +Q P +
Sbjct: 60 MLTHLLDLSGGVDLGNSADALLLTHAVSIEVLVFLAPIVALLAASGLASAFLQNTPSIVF 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP ++SL +G RI+ LV F+K+ K V I+ N +++ + +
Sbjct: 120 HRIKPDASKLSLAKGWSRIFGAQGLVEFLKAVFKFSTVSAIVYGQFRANEAELINAMFTD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ K++ + + L +DI WS W L+MSKQEIKDE KQ G+P
Sbjct: 180 PSALPEAILQISMKLIAGVCIVTILLVTVDILWSRSHWRKNLRMSKQEIKDEHKQMEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K RQ+S+AR R R++MM A +AT+I+ NPTH+A+ALRY +N APV+VAKGQ+LIA
Sbjct: 240 IVKARQRSLARDRARNRMMSAVPQATLIVANPTHFAVALRYDGDQNPAPVVVAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+R+IA +NIP+ E+ LARSL+ + IPP FY+AVA++I +Y
Sbjct: 300 LKIREIAEANNIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICYVYS 350
>gi|209547917|ref|YP_002279834.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533673|gb|ACI53608.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 359
Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats.
Identities = 150/350 (42%), Positives = 237/350 (67%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + +
Sbjct: 1 MAD-DDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGHMAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L
Sbjct: 60 TLRDIFDQPDQWKIETGPDVLSLFVKLGWAIAALLAPAFILFMVFGIASSIFQNLPTPVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +R++S+ L+ F KS K+++VG I+ L YF+ +D + ++
Sbjct: 120 ERIRPQASRISPVKGWERLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +IL +RK++I++L+ A + ++D+ W+ H W+++LKM++ EIK+E KQ+ G+P
Sbjct: 180 PQTILVRISTAMRKIIIVVLIATAIVAIVDVFWTRHHWFTELKMTRHEIKEENKQAQGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA
Sbjct: 240 FVKGRQRSLMRDRARRRMISNVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV +++ IP VFYKAVA+LI+++Y
Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDTVIPSVFYKAVAELIHRVY 349
>gi|134300232|ref|YP_001113728.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
MI-1]
gi|134052932|gb|ABO50903.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
MI-1]
Length = 354
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 186/349 (53%), Gaps = 2/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ KTE + +++++A +G P S + + +L ++ L + I + +
Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVPKSADLNGAILLLITGLFALLYKDNLITHMQTYFFT 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ +++ +D S++V +L ++ + P +L M+ +G L Q + +K
Sbjct: 63 YFNNFVKQQQQD-SYLVQILIDFMINVFVVFTPLFILLMVVALGVNLAQVGFLFAPEAIK 121
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +++ G+K ++S + +KS +KI +VG ++ ++ +L + P ++
Sbjct: 122 PKLDKLNPINGLKNMFSGRAMFELVKSLLKITIVGWVVYAAVRGEMANLLAIFHSPPRTL 181
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L KV++ + + +LD+ + + + +++MSKQE+K+E KQ+ G+P IK
Sbjct: 182 LNQVLTIALKVILWGAVVYLGIALLDLLYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ R + + + +AT+++TNPTHYA+AL+Y DAPV+VAKG + +A+++R
Sbjct: 242 WLRRRQRQLLANLARKEVPQATVVVTNPTHYAVALKYE-QPMDAPVVVAKGTDHMARQIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA ++ +P+ E +AR L+ V I AIP ++AVA+++ +Y K
Sbjct: 301 EIARKNEVPVIENVEVARFLYANVEIGHAIPMEMFQAVAEILAMVYRMK 349
>gi|34496481|ref|NP_900696.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
12472]
gi|34102335|gb|AAQ58701.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
12472]
Length = 388
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ +TE S+K++ A +GN P S+E S F+ + + L+ +++
Sbjct: 1 MAE-DSDLERTEPASAKRLSMAREDGNIPRSKELSTFAVTMTGVALLMAMGGQLGHALGE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + Q +++ + A + P + + + ++ +
Sbjct: 60 IMRHLF-TFDQATVQNTEPALIRFKESLFQALGALAPFFGGLALAALLAPMLVGGWNMTF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F +++ GIKR++S+N +K+ +K +L+G I T + ++ ++
Sbjct: 119 KALEPNFGKLNPLPGIKRLFSLNAATEGLKAILKSLLIGGIATWYIWRERGEIIGLLAMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + ++ + L LD+ + +Y KL+M+K+E+K E K++ G+P
Sbjct: 179 LEAGILKMTDLMIRTFFIVTSALILLVALDVPYQLWSYYKKLRMTKEEVKQEYKEAEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R R +MM+ +A +I+TNPTH+A+AL+Y AP +VAKG ++A
Sbjct: 239 EVKGRIRQMQREAARKRMMQEVPKANVIVTNPTHFAVALKYD-DTMRAPQVVAKGSLILA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+ E +PI P AR+L+ + IP Y A AQ++ ++ +
Sbjct: 298 EKIIDTGKESRVPIMRSPRFARALYFHAELGQDIPAQLYAAAAQVLAYVFQLR 350
>gi|190890352|ref|YP_001976894.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|190695631|gb|ACE89716.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
Length = 373
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 149/347 (42%), Positives = 233/347 (67%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L
Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L +
Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P +
Sbjct: 137 RPQASRISPVKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363
>gi|86750881|ref|YP_487377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
HaA2]
gi|86573909|gb|ABD08466.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
HaA2]
Length = 358
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 190/353 (53%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+ K E P+ K+++DAL +G+ S+E + + +I + L F +T
Sbjct: 1 MSD-DSDQEKQEEPTQKRLDDALEKGDVAKSQEVNTWFAIAGATLLLSSFSGSIGSGITG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ + ++ + + + L + S L +P L L + IGS LIQ V +
Sbjct: 60 PMRTLIEKSWMLPVDGVGLLALTKSLLLMLISVLGVP-LGLLALVAIGSNLIQHRLVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F ++S EG KR++ L NF+K K+I +G ++ L + + +
Sbjct: 119 EGLKPKFSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S+L K++ + +A + D + YH W + KMS QE+KDE KQS G+P
Sbjct: 179 VVSLLGVTVSLTLKLMGTVAAVLAFVAAGDFFFQYHTWRERQKMSLQEVKDEYKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPGASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A +++PI E LAR+LF V ++ IP Y AVA++I + + +
Sbjct: 298 FKIREVAKANDVPIVENVPLARALFATVEVDEEIPVEHYHAVAEVIGYVMNLR 350
>gi|220929449|ref|YP_002506358.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
H10]
gi|219999777|gb|ACL76378.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
H10]
Length = 381
Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 179/349 (51%), Gaps = 1/349 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK DA +G SRE + ++ ++ + F +T +
Sbjct: 27 GAGDKTEKATPKKKSDARKKGQVFQSREMTASLILIITIVAMRIFGGTIYSQLTQYIKKT 86
Query: 66 LAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
T + D + + L + ++ V+P LL+ ++ + Q + + +K
Sbjct: 87 FNEYLTVKDAIDFNILANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTMETLK 146
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
R++ G KRI+S+ ++V +KS +KII+V + L +L + + ++
Sbjct: 147 IKGDRINPLSGFKRIFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTDLMNV 206
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L V + I + + L D + + + LKM+KQE+K+E KQ G+P IK+
Sbjct: 207 LIFICDASFTVALRICMAMVILGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGSPEIKS 266
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ K R +MM+ +A ++ITNPTH+A+AL+Y ++ AP +VAKGQ+ IA +++
Sbjct: 267 KIKQKQRQMSMKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKGQDYIALRIK 326
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA ++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K
Sbjct: 327 QIASDNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375
>gi|312135835|ref|YP_004003173.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
owensensis OL]
gi|311775886|gb|ADQ05373.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
owensensis OL]
Length = 366
Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats.
Identities = 101/344 (29%), Positives = 185/344 (53%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S + + +
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLMSILFLKFGYSLITQPLQAFSTYFFGNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+E++ LL + ++ ++V+P L M Q ++ +K SF++
Sbjct: 76 D-YNIENVRDASRLLGLIVTTSLKIVLPFCLAVMFVATIVEWAQGSFLITAESLKISFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLVIGYTGYSYTKSFAKKLLEMYEMNVLTIVKFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + ++D + Q+ KL M+K+E+K+E KQ+ GNP IK+R +
Sbjct: 195 DSAVNLILWMSVMFFGIAIIDFTFQRWQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + RA ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPRADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAMK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+NI I E LAR+L+ I IPP Y+AVA+++ +Y K
Sbjct: 315 YNIEIVENKELARALYNICEIGDFIPPELYQAVAEVLAYVYSLK 358
>gi|262273550|ref|ZP_06051364.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
gi|262222528|gb|EEY73839.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
Length = 375
Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 184/352 (52%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ + +KTE PS +KI A EGN P SRE ++A + LL FS I+
Sbjct: 1 MSDS-SAQDKTERPSEQKIRKAREEGNLPRSRELVTALMMVASAL-LLSAFSSAIHHTIV 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + + + LL ++ A++ + P L M+ IG+ L++ ++
Sbjct: 59 SVSEMTLNIDKDTIFSPDKMGELLWQSAILATQALAPLFALIMLVSIGANLLRGGWNIST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKRI+S N+LV +KS +K+ +G + + ++
Sbjct: 119 KAMMPKLSKLNPLSGIKRIFSANSLVELIKSILKVTFIGGALYWLINHYLNEIIALQHTR 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L + L + + VL++ +S +++ KLKM+KQE+K+E K + G P
Sbjct: 179 LSAAIPAFLDLLWTGLFVYGLVLLFIAVLEMPYSSYEYIKKLKMTKQEVKEEHKNTEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R + + A +IITNPTHYA+AL+Y ++ +AP ++AKG + A
Sbjct: 239 EIKARIRQLQRQMSQRAFAKTVPTADVIITNPTHYAVALKYDLSKANAPFVIAKGVDQAA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R+IA +H +P+ E P LAR+++ IP Y AVA ++ ++
Sbjct: 299 LQIRQIAQQHGLPVVEVPPLARAVYYSTNEWQEIPAQLYVAVAHVLNYVFQL 350
>gi|150020741|ref|YP_001306095.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
BI429]
gi|149793262|gb|ABR30710.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
BI429]
Length = 377
Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats.
Identities = 99/345 (28%), Positives = 186/345 (53%), Gaps = 1/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE + ++ + A EG PISRE + + LA ++ F I + S + A
Sbjct: 32 DKTEKATPRRRQKAREEGQVPISRELTSGFTFLAAVLGFAFLGRGIILGLESAV-AFFAE 90
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+I+ + + ++ + + M+ GI +Q + +K F
Sbjct: 91 LPSYDTININDLGIYAFNAFKGLIIDLVIFVGIIMVTGIAVGSLQTKFLFTFKSLKLDFS 150
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ G+KR++S+ +L +KS +K+++VG + + + N+ ML I +
Sbjct: 151 KINPINGLKRMFSLRSLFELLKSILKLVIVGYVGYLVIKSNWNKMLLAIDKSVKDGSLLI 210
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++LI + + +++ D +S +++ ++M+KQE+K+E K+ GNP IK +Q+
Sbjct: 211 WDITFELLIKCGIALFIVSIADYFFSRYEYEKNIRMTKQEVKEEFKEVEGNPEIKRKQRE 270
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I H+MM+ AT++ITNPTH+A+A++Y E + P++VAKG + +A+K++K+A
Sbjct: 271 IMMQYSMHRMMQEVPEATVVITNPTHFAVAIKYEVDEMEVPIVVAKGMDNLAEKIKKVAR 330
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+N+PI P LAR L+ V + IP FY+AVA+++ +Y K
Sbjct: 331 ENNVPILRNPKLARELYFNVDVGDEIPEKFYRAVAEVLAYVYSLK 375
>gi|167645349|ref|YP_001683012.1| flagellar biosynthesis protein FlhB [Caulobacter sp. K31]
gi|167347779|gb|ABZ70514.1| flagellar biosynthetic protein FlhB [Caulobacter sp. K31]
Length = 360
Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 193/353 (54%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ +KTE P++KK+ DA +G+ P S + S +S+ ++ + +
Sbjct: 1 MADDQDEASKTEEPTAKKLSDARAKGDVPKSADISQLASLSGAFGVVVIAGGWLTRDLVN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A A +E + + ++A ++ +++ + G + + Q +L+
Sbjct: 61 QLTPFFAHAGTMDVE--GGVNAIAKTAVMAALPALVLVMVVSGLLGAAANVAQSGFILSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP +++ + +G+KR++ ++ V F KS VK ++ G I + + + + + +
Sbjct: 119 DKIKPDLQKLDIIKGLKRVFGMDGFVQFAKSAVKFLVTGLIAWYVVKPDAAQIPNLVGMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+I+ + K+ M+L+F+ D W ++ +++MS Q+IKDE KQS G+P
Sbjct: 179 VGAIIPLSMKLCTKLFWMVLIFLMATAGFDWFWQRLRFNKRMRMSLQDIKDEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +QK + R R +MM A +AT++I NPTHYA+AL+Y Q EN AP+ VAKG + +A
Sbjct: 239 HVKGKQKQLRMQRSRQRMMAAVPKATVVIMNPTHYAVALKYEQGENAAPICVAKGVDDLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A E + I E+P LAR+L+ + ++ IP ++AVA++I + K
Sbjct: 299 LRIRAVAEEAGVYILEDPPLARALYAAMDVDEQIPAEHFEAVAKVIGFVMSNK 351
>gi|54297699|ref|YP_124068.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
Paris]
gi|53751484|emb|CAH12902.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
Paris]
Length = 382
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PSSK+++++ +G S++ + +L + F + S
Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L ++ + L L+ S V+P LL+ + + + L+ V +
Sbjct: 61 IMQQAFD-FDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+++ +G KR+ S+ V +K+F+K +LV + + L +L+ A
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352
>gi|332981452|ref|YP_004462893.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
BON]
gi|332699130|gb|AEE96071.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
BON]
Length = 361
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 95/347 (27%), Positives = 174/347 (50%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ K+ +A +G S E ++ + +LA + + F + +T+ +
Sbjct: 12 DDEKTEQPTPKRRREAREKGQVFKSAEINMVAVLLASFLVIKAIFPSLLQILTAYERQIY 71
Query: 67 ASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
A + ++ L + + + + + + GI + Q V + +
Sbjct: 72 TMAGSADSIYTSENLSTLFINTIIQIGKGLWIFIFGICIIGIAVNIAQVGFVFSAKPLAM 131
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
++ G KRI+S + +KS +KI ++G + + + L ++
Sbjct: 132 DLGHLNPAAGFKRIFSKRAVNELVKSILKIAIIGYVAYTEIRNDINIFLAMSREGTSVMI 191
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y V I + +AT+ VLD + ++ L+MSKQE+K E K++ G+P IK R
Sbjct: 192 YDMVSIVLNAAIKLTAVMATVAVLDYIFQRREYERNLRMSKQEVKQEFKETEGDPQIKAR 251
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ I R +MM+ +A ++ITNPTH+A+ALRY + APV++AKG + +A+++++
Sbjct: 252 IRQIQRQLAMMRMMQQVPKADVVITNPTHFAVALRYDAETDQAPVILAKGVDYMAQRIKE 311
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+A + +PI E LAR+L+ V I IPP FY+AVA+++ +Y+
Sbjct: 312 VARQSRVPIVENRELARNLYYAVDIGQIIPPQFYEAVAEVLAYVYNM 358
>gi|90415339|ref|ZP_01223273.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
HTCC2207]
gi|90332662|gb|EAS47832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
HTCC2207]
Length = 382
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 186/352 (52%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+ + + E P++K++E +G S+E + + ++ +L F S I +T
Sbjct: 1 MSDKDSSEEREEEPTAKRLEKGREDGQVARSQELGVAAMMIGVAFFLYLFGSYIIADLTK 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + D S +V ++++ +V+P +L ++ I S I + +L
Sbjct: 61 VFASGF-TFDRKAVFDTSLLVPAFGIQAVNSFIVVVPIFVLAVIIAIASAGIMGGYIFSL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++ + +V+ K+ K L+ ++ + ++ N+ + +
Sbjct: 120 KSLAPKASKINPMAGLKRMFGMKAVVDLSKALSKFALIALVLYLVVSANFPMLTKLGFMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + +++ L + +DI + H + ++KM+KQE+K+E+K + G P
Sbjct: 180 LEPAMAEAGRIIAFGTVLVTLTLIVAAAIDIPYQLHTFNKQMKMTKQEVKEEMKDTEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R MM A + A ++I NP H+A+AL Y ++N AP++VAKG +L+A
Sbjct: 240 EVKAQIRRKQREIATGMMMSAIADADVVIVNPEHFAVALSYDPSKNGAPIMVAKGADLLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K +R+ A E IP+F P LARS+F IN ++P Y AVAQ+I I++
Sbjct: 300 KAIRERAKEEGIPLFSSPVLARSIFYTTEINQSVPESLYYAVAQVIAYIFNL 351
>gi|86356301|ref|YP_468193.1| flagellar biosynthesis protein FlhB [Rhizobium etli CFN 42]
gi|86280403|gb|ABC89466.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
42]
Length = 373
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 150/347 (43%), Positives = 235/347 (67%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L
Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLR 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L +
Sbjct: 77 DIFEQPDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERI 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P R+S +G R++S+ L+ F KS K+++VG I+ L YF+ +D + ++P +
Sbjct: 137 RPQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQT 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL +RK++I++L+ A + + D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K
Sbjct: 197 ILVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363
>gi|326791523|ref|YP_004309344.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
5427]
gi|326542287|gb|ADZ84146.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
5427]
Length = 372
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 99/348 (28%), Positives = 175/348 (50%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE + KK EDA +G S E + I+ L + + + +
Sbjct: 16 ESEGRTEKATPKKKEDARKKGQVAKSAELNTAVLIVGFCAVSLLLGGYMLSGIQTSIITS 75
Query: 66 LASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ ++ E ++++ + + +P + + G IQ ++ +K
Sbjct: 76 MNRLSEVFNEVTSNYMLVVFRSAIFDILWICLPLWICLFIIGFIVSYIQVGYKVSFEPMK 135
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F +++ GIKRI S + +V+ + S K+I++G I+ + + F I
Sbjct: 136 VKFSKMNPINGIKRIISKDMIVSLILSAAKVIVLGAIVYNIILSKIPIFMRFYELTIEQI 195
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L TV ++ + L VLD + ++ +KM+KQEIK+E K + G+P IK+
Sbjct: 196 LNTIAMTVVQIGFFVGGAFLVLAVLDYVYQRYKHADSIKMTKQEIKEEYKNAEGDPQIKS 255
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ K R +MM+A A +IITNPTH+A+A++Y +++ APV+VAKG + +A+K++
Sbjct: 256 KIKQKMREGSMRRMMQAIPEADVIITNPTHFAIAIKYDESKGTAPVVVAKGVDYVAQKIK 315
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A EH+I I E LAR+L+ V +N IPP Y AVA+++ IY+
Sbjct: 316 EKAKEHHIEIVENKPLARALYYTVDLNKEIPPELYGAVAEVLAFIYNL 363
>gi|91976176|ref|YP_568835.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
BisB5]
gi|91682632|gb|ABE38934.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
BisB5]
Length = 357
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 187/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D + K + P+ K+++DAL G+ S+E + + I + L F VT
Sbjct: 1 MSD-DNDEEKQQEPTQKRLDDALKRGDVAKSQEVNTWFVIAGATLLLSSFSGSIGTGVTG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ + K++ + + L + S L +P LL ++ IGS LIQ V +
Sbjct: 60 PMRALIEKSWMLKVDGAGLLALTKSLLLMLVSVLGVPLFLLMLVA-IGSNLIQHRLVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++S EG KR++ L NF+K K+I +G ++ L + + +
Sbjct: 119 EGLTPKLSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S+L K++ + +A + D + Y W+ + KMS QE+KDE KQS G+P
Sbjct: 179 VVSLLGVTVGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPSASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A +N+PI E LAR+L+ V ++ IP Y AVA++I + + K
Sbjct: 298 FKIREVAKANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVIGYVMNLK 350
>gi|54294673|ref|YP_127088.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
Lens]
gi|53754505|emb|CAH15989.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
Lens]
Length = 382
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PSSK+++++ +G S++ + +L + F + S
Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L ++ + L L+ S V+P LL+ + + + L+ V +
Sbjct: 61 IMQQAFD-FDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+++ +G KR+ S+ V +K+F+K +LV + + L +L+ A
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352
>gi|327193023|gb|EGE59935.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
CNPAF512]
Length = 373
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 149/347 (42%), Positives = 233/347 (67%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L
Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L +
Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P +
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363
>gi|299069778|emb|CBJ41057.1| flagellar export pore protein [Ralstonia solanacearum CMR15]
Length = 387
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE S++++E A EG+ P SRE F + L + + S
Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGAGGLWVMGESIVRTAAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + V+ GL+L ++ S L ++
Sbjct: 60 FLARCLE--FHRYDYTRAQEQWHYVGAQFGPLATVLAGLVLMLVLAALSPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P R+ G+KR++S+ L+ + K++L+G + + ++ +
Sbjct: 118 KPVTPDITRLLGMHGLKRMFSVQGLLELPRLLAKLVLLGGVGWWLILHYRDDFVELPRQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LIAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350
>gi|317051542|ref|YP_004112658.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
gi|316946626|gb|ADU66102.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
Length = 354
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 104/349 (29%), Positives = 184/349 (52%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ KTE P+ KK+E A EGN S++ S + + A ++ L F + + +
Sbjct: 4 ESDQEKTEEPTPKKLEKAREEGNVAKSKDMSDTAVLFAGVMTLYFLHERMLEGFFAIMRN 63
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L T+ I+ + + L ++ P L +F + + Q + + V
Sbjct: 64 YLD-LTRNTFPTINEMPSFGITILLQMLHILWPLFLALTLFALAINIGQIGLLWSSKAVA 122
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P + +++ +GI + +S+ NL+ KS +K+ + G + + + ++L + P I
Sbjct: 123 PKWSKLNPIKGIAQKFSLKNLIEVTKSLLKVSVFGPVAYFIAKDEFGSILMMMHLTPIEI 182
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
A + K+ I I+L + ++ +D + +Q + KLKMSKQE+K+E KQ GNP +K
Sbjct: 183 FATALMIIFKIWITIILIMLIVSAVDFYFQKYQHHEKLKMSKQEVKEERKQMDGNPEVKQ 242
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R +S+ R +MM ++ ++ITNP A+AL+Y AP LVAKGQ L+A+++R
Sbjct: 243 RIRSLQREMAMKRMMGDVPKSDVVITNPLFLAVALKYDTEVKAAPYLVAKGQELVAQRIR 302
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A EH+IPI ++P LAR L+ + I Y+AVA+++ +IY +K
Sbjct: 303 DLALEHDIPIQQDPLLARQLYDSLEPGDEITHELYQAVAEILAEIYRQK 351
>gi|148359330|ref|YP_001250537.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
gi|296107377|ref|YP_003619077.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
Alcoy]
gi|148281103|gb|ABQ55191.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
gi|295649278|gb|ADG25125.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PSSK+++++ +G S++ + +L + F + S
Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L ++ + L L+ S V+P LL+ + + + L+ V +
Sbjct: 61 IMQQAFD-FDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L +L+ A
Sbjct: 120 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352
>gi|37525818|ref|NP_929162.1| flagellar biosynthesis protein FlhB [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785247|emb|CAE14188.1| Flagellar biosynthetic protein FlhB [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 383
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K E A EG SRE S + + L L + ++
Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKEGQIVRSRELSSILMLTSGLSLLWMSGQSMTHELSL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + + +V + L A ++P ++ + + + V +
Sbjct: 60 MVFEGF-SFDHSMVSNDKQMVQQIGRLLQQAVLALLPVFAGLVLVALSAPALLGGLVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+++ G+KRI+S+N L K+ +K VG + L N+ ML I+
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPAMLRLIAQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALKYDEKAMSAPKILAKGAGIIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++I E+ IP+ E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 LRIKEIGTENRIPLLEVPPLARALYRHGEIGGQIPATLYAAVAEVLAWVYQLK 351
>gi|239817109|ref|YP_002946019.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
gi|239803686|gb|ACS20753.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
Length = 382
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE S +++E A +G+ SRE + F + + L ++
Sbjct: 1 MAEE-SDLEKTEPASPQRLEKAREQGDVARSRELATFVLLGTAVAGLWLTADSLGATLRG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D SH++ + A ++P + ++ + + L+ +L+
Sbjct: 60 ALAQGL-HFDRAAAFDPSHMLARAGLMGQQALLALVPLFGMMLVAAVAAPLMLGGWLLSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++ G+ R++S L K+ K +L+G + + + +N + ++ +
Sbjct: 119 KALAPKFSKLDPVAGVGRMFSAQALSELFKALAKSLLIGGVAWLVIMDNVDEVSALMAQS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L V +I + + ++D+ + ++ KL+MS+++++ E K+S G+P
Sbjct: 179 ERAALPQMIVLVAHNCALIASALFLVALVDVPYQLWSYHRKLRMSREDLRQEHKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R +MM +A I++TNPTH+A+AL+Y+ + AP +VAKG +L+A
Sbjct: 239 HIKAQIRRQQQQMARRRMMSEVPKADIVVTNPTHFAVALKYVDHDMRAPRVVAKGSDLMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA E+N+ I E P L R+LFK + IP Y AVA+++ +Y K
Sbjct: 299 ARIREIARENNVAILEAPPLTRALFKHTRLGDEIPAGLYTAVAEVLAWVYQLK 351
>gi|170741402|ref|YP_001770057.1| flagellar biosynthesis protein FlhB [Methylobacterium sp. 4-46]
gi|168195676|gb|ACA17623.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
Length = 354
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 115/350 (32%), Positives = 208/350 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ ++KTE+P+ +++ +A+ +G+ P+SREAS+ +S++ LI L F ++
Sbjct: 1 MADETDQESKTESPTERRVREAIEKGDVPVSREASVLASVIGLLIALTLFVRGQAATLAR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ LE+ LL ++++A R ++P L + + G+ + ++Q +P
Sbjct: 61 EFVPLIDQPRGFTLENARDATLLLQSVAIAAGRFLLPVLAILAVCGLAASMLQNLPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + RVS G RI+ + V F+KS K + + + + L +L+ ++ +
Sbjct: 121 DRIQPKWSRVSPASGWSRIFGRSGQVEFLKSLFKFLTITVVSLLLLRSERHKVLNAMTVD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + L D+ W+ +W L+MS+QE KDE KQ G+P
Sbjct: 181 PSQVPELILSMAIRLVSAVSIATIVLVAADLIWARLRWQRSLRMSRQETKDEHKQIEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R +S+A+ R R +M+ A RAT++I NPTH+A+ALRY + EN AP++VAKGQ+LIA
Sbjct: 241 LVKARLRSLAQDRTRKRMLAAVPRATVVIANPTHFAVALRYERDENPAPLVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA + IP+ E+ LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 301 LKIREIAEANGIPVIEDKPLARSLYDSVQVDQLIPAEFYRAVAQILFYVF 350
>gi|306820134|ref|ZP_07453782.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551912|gb|EFM39855.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 379
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 109/345 (31%), Positives = 182/345 (52%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + KK ED +GN SRE + +S+ A + + F + + +
Sbjct: 27 EKTEEATPKKKEDTRKKGNVLQSRELTGAASLFAAVFAINTFSKEILKVIVDAWNYYTGM 86
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+L + L T L + + ++ ++ ++ Q + ++P +
Sbjct: 87 LNSFELTNQMQAYKLFTTLLIFCVKAMLFIIIPVVLVAFLVQKAQVGNIFTAETIRPKLE 146
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+S+ G KR++S+ + V +KS +KI+LVG + + +N ++ S N Y
Sbjct: 147 RISILSGFKRMFSMQSTVTLIKSLLKIMLVGYVGYAYIKDNMPLVMKSFSLNDKQFSYML 206
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F + + ++ I L + D + H + ++MSKQEIKDE KQS G+P IK++ K
Sbjct: 207 FHFSINMALRMVYVIIALGIFDYVYQRHSYNKNIRMSKQEIKDEYKQSEGDPQIKSKIKE 266
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
R +MM+ +A +IITNPTH+A+AL+Y + + DAP +VAKGQ+ IAKK+R+ A
Sbjct: 267 RQRQSAMRRMMQDLPKADVIITNPTHFAVALKYDEDKYDAPYVVAKGQDFIAKKIREKAK 326
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +IPI E LAR+L+ ++ I S I P Y+AVA+++ I+ K
Sbjct: 327 ELDIPIVENKPLARALYSEIDIGSVITPQLYEAVAEVLAYIFSLK 371
>gi|299131771|ref|ZP_07024966.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
gi|298591908|gb|EFI52108.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
Length = 356
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KT+ P++K++EDA G+ S E + + I + F +T
Sbjct: 1 MAEE-GDEDKTQDPTAKRLEDAHKRGDVAKSIEVNTWFMIAGATFIMSSFSGSIANKLTV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL A + K + S ++ L+ L + L ++ +GS+LIQ PV ++
Sbjct: 60 PLKNLLEHAGRMKTDGPS-LLLLVGRLETVMLTALGIPFALLIVAAVGSHLIQHRPVWSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P F ++S G KR++ NF K K+I++G ++ + + + + +
Sbjct: 119 DPITPKFSKLSPMSGAKRLFGKQAAANFAKGLFKVIVLGVVMAMVMWPEHERADVMVRID 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G+P
Sbjct: 179 PSLMLDLTRSMALKLMGTVVAMLAIVATLDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R +++ +R+R +MM A A+++ITNPTHYA+AL+Y + AP+ VAKG +LIA
Sbjct: 239 HIKGRIRALRVARMRKRMMAAVPTASVVITNPTHYAVALKYERG-MPAPICVAKGVDLIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A H+IP+ E LAR+L V I+ IP Y AVA++I + K
Sbjct: 298 FKIREVAAAHDIPVVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMKLK 350
>gi|229827381|ref|ZP_04453450.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
49176]
gi|229788319|gb|EEP24433.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
49176]
Length = 387
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 94/350 (26%), Positives = 168/350 (48%), Gaps = 2/350 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK+EDA EG S + +L L F +
Sbjct: 31 EGGDKTEKATPKKLEDARKEGRVARSSDLINGLMLLLMFFVLRIFGNFMAKGFLESFVKY 90
Query: 66 L--ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ ++ D+ V L + +P L+ + ++Q + +
Sbjct: 91 YNKTADISMEIFDVKQAVNLGNEIVFDIVIACLPVLIGSFLVAFAGNVVQIGWKVTTKPL 150
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP R++ G+KR++S +V +KS +K++ + + + + + +L+
Sbjct: 151 KPKLDRLNPIGGLKRMFSQEKVVELIKSILKVLAIAIVAYNEVKDRWLFILNLYDFEFMQ 210
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + F V V + I + + + D G+ + L+MSKQE+KDE+KQS G+P +K
Sbjct: 211 AIVNIFDIVLDVGVKISVLFVIIGIADFGYQKWKHLHDLRMSKQEVKDEMKQSEGDPQVK 270
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + R R +MM+ +A ++ITNPTH+A+A++Y + + +AP ++AKG + +A +
Sbjct: 271 GRIRQKMREGARRRMMQELPKADVVITNPTHFAVAIKYDKEKAEAPYVLAKGADYVAATI 330
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ A EH I I E LAR L+ V I IPP Y+ VA+++ +Y K
Sbjct: 331 KEAAKEHKIEIVENKPLARMLYYNVEIGEQIPPELYQMVAEVLAYVYSVK 380
>gi|312621587|ref|YP_004023200.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202054|gb|ADQ45381.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
kronotskyensis 2002]
Length = 366
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S I + ++
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
LEDIS LL+ + ++ ++V+P + M Q ++ +K SF++
Sbjct: 76 -NYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAAIVEWAQSSFLITGQSLKMSFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYCYTQTFAKKLLEMYEMNVFTIVRFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ +
Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H I I E LAR+L+ + IPP Y+AVA+++ +Y K
Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358
>gi|312792666|ref|YP_004025589.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179806|gb|ADQ39976.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 366
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 101/344 (29%), Positives = 187/344 (54%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S + + ++
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFAYSSIVEPLQQGSKYFFSNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
LED+ LL+ + ++ ++++P L M+ Q ++ +K SF++
Sbjct: 76 -NYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ +
Sbjct: 195 DSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H I I E LAR+L+ I IPP Y+AVA+++ +Y K
Sbjct: 315 HRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358
>gi|225849160|ref|YP_002729324.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644259|gb|ACN99309.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 352
Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats.
Identities = 91/344 (26%), Positives = 177/344 (51%), Gaps = 2/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + K+ + A EG S + ++ S+ + ++F+ + ++
Sbjct: 7 KTEKATPKRRQKAREEGQVLKSTDVAVALSLFVVFLVMIFYIPFLYKYLLGYFKYTFSNP 66
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
E+ + + L++P + + + GI + + Q + L + P +
Sbjct: 67 FYLIPEESGK--NFIWFTFKVLAILILPFVSILFIVGIVANVAQFGFLFTLKPLTPKLSK 124
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G++R++S++ L +KS +K+ L + ++ L +++AN +S +Y
Sbjct: 125 INPISGLQRLFSLSTLFELVKSILKLSLALFVSYFLVSYLLDGFLVYMTANINSQIYILA 184
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
T+ +++ + + D + +++ LKM+K E+K+E K GNPI+K +
Sbjct: 185 KTIIILIMAFTFLSIPIAIADFFYRRYEYEENLKMTKDEVKEERKSYEGNPIVKKEIRKR 244
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA K++++A E
Sbjct: 245 MRQLALKRMIAEVPKADVVITNPDHYAVALKYEKGKMKAPQVIAKGQDLIALKIKEVAKE 304
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
HN+ I E+P LARSL+ + IP FY+AVA+++ IY +K
Sbjct: 305 HNVKIVEDPPLARSLYSSCEVGDYIPEDFYEAVAKILAVIYKQK 348
>gi|52842013|ref|YP_095812.1| flagellar biosynthesis protein FlhB [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629124|gb|AAU27865.1| flagellar biosynthetic protein FlhB [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 383
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PSSK+++++ +G S++ + +L + F + S
Sbjct: 2 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 61
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + L ++ + L L+ S V+P LL+ + + + L+ V +
Sbjct: 62 IMQQAFD-FDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L +L+ A
Sbjct: 121 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P
Sbjct: 181 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A
Sbjct: 241 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ +
Sbjct: 301 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 353
>gi|157363487|ref|YP_001470254.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
gi|157314091|gb|ABV33190.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
Length = 376
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 93/345 (26%), Positives = 176/345 (51%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ ++ A EG S E ++ + L + + F F I + + + +
Sbjct: 35 EKTEKPTPRRRRKAREEGQVATSNELNMAVTFLVAVFVMRFIFQRLIMFLENGSILFFSL 94
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
L ++S + L++ L ++ I + +Q +L+ +K K
Sbjct: 95 EENDFLNNLSG---RIYQSFKDTIFLLVLLFLSLIISVIFAGAMQTKFLLSFKPLKMDLK 151
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG KR +S+ +L +KS +K+++VG + + N+ + L
Sbjct: 152 RINPVEGFKRFFSMRSLFELLKSILKMVIVGFVAYSVIRSNWILFRFYSDMETVDSLKLI 211
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F +V++ + + L ++D + ++ ++M+KQEIK+E ++ G+P ++ RQ+
Sbjct: 212 FNLTYEVMLKCAIALFILAIVDYFYQRWEFEKSIRMTKQEIKEEYREIEGSPEVRRRQRE 271
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R +M++ A ++ITNP+H A+A+ Y E +APV++AKG + IA+K+ +IA
Sbjct: 272 IMARLARGRMLQQVPEADVVITNPSHIAVAIEYKSEEMEAPVVLAKGADEIAQKIIQIAK 331
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+NIP+ P +AR L+K I IPP Y+AVA+++ +Y +
Sbjct: 332 ENNIPVVRNPQVARELYKTTDIGEQIPPNMYRAVAEILAYVYSLR 376
>gi|118475475|ref|YP_891544.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
fetus 82-40]
gi|118414701|gb|ABK83121.1| flagellar biosynthetic protein FlhB [Campylobacter fetus subsp.
fetus 82-40]
Length = 357
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 178/350 (50%), Gaps = 5/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ K E P+ KK+EDA N+GN S++ S F ++L L+ + +
Sbjct: 1 MA---DDQEKIEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + H L +++P + M+ GI S ++Q + +
Sbjct: 58 LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F ++ +GI ++S+ L++ +K +K+ V + + + I +
Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + + ++LL + + D+ +Q++ L+MSKQE+KDE KQ G+P
Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM+ A ++ITNPTHYA+ALRY + + APV++AKG + +A
Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITNPTHYAVALRYDKEKEKAPVVLAKGVDHLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++RKIA E+ I I E P LAR L+K I+ IP ++AVA+++ +Y
Sbjct: 296 LRIRKIATENGIQIVENPPLARELYKLCDIDDQIPGNLFQAVAEVLSFVY 345
>gi|225850260|ref|YP_002730494.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
gi|225645107|gb|ACO03293.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
Length = 349
Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 175/353 (49%), Gaps = 6/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + KTE + ++ + A EG S++ + +S+L + + + +T
Sbjct: 1 MAKDPS---KTEKATPRRRQKAREEGQVARSQDIPIAASLLIVAVMMFAYIPFSYNILTE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
H ++ + + LV+P L+ + G+ S ++Q +L+
Sbjct: 58 YFHHTFSNPFHLI---PDLNRGFIYESVKVLAILVLPFFLILLAIGVFSNVVQFGFLLSG 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R++ G+ RI+S+ L +++ +K++ + L + +
Sbjct: 115 KALVPKIDRLNPVSGLGRIFSMKTLFELVRNLLKLLFASVVAYFLLMKIISESFNMSYLP 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +Y F + +++ + + ++D + + +KMSK EIK+E K GNP
Sbjct: 175 LNHEIYFLFKYIIMLILAFAVISIPIAIIDFIYRKWEHEENIKMSKHEIKEERKMYEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + R +MM +A ++ITNP HYA+AL+Y + + AP ++AKG+N IA
Sbjct: 235 HVKAAIRKKQREIAMMRMMAELPKADVVITNPEHYAVALKYEKGKMAAPKVIAKGKNHIA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA +++IP+ E+P LARSL+ I IP Y A+A+++ KIY +K
Sbjct: 295 QKIKEIAKKYDIPVVEDPPLARSLYSSCEIGDMIPENLYVAIAKILAKIYRRK 347
>gi|170722841|ref|YP_001750529.1| flagellar biosynthesis protein FlhB [Pseudomonas putida W619]
gi|169760844|gb|ACA74160.1| flagellar biosynthetic protein FlhB [Pseudomonas putida W619]
Length = 380
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 105/354 (29%), Positives = 181/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++
Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 MMRLNF-SLTREVIVDEGAMGAFLLASGKMAIWAVQPVLILLFVVAFIAPIALGGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S+N L +K+ K I++ + + L + +L +
Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQALLAIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + Q + KLKM+KQE+KDE K S G P
Sbjct: 180 LDQAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|226944866|ref|YP_002799939.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
gi|226719793|gb|ACO78964.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
Length = 402
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTEA S +++E A EG SRE + F +LA + L +
Sbjct: 17 MADESSDQEKTEAASPRRLEKAREEGQVARSRELTTFLLLLAGIAALWSMGGLLHERLAE 76
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + D + ++ L ++P LL + + + + +++
Sbjct: 77 VMEQALL-FERAQAFDSARMLARFWELGEGTLFTLLPLFLLMAVVALVAPSLLGGLLVSA 135
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R++ +G+KR++S L K+ K ILVG I L + ++
Sbjct: 136 KALQPQLARLNPLKGLKRVFSTQALAELGKAVAKSILVGWIAVFFLRKYIDELMALSGMP 195
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A + MI+L + + LD+ + KL+MSK+E++ E K+S G+P
Sbjct: 196 IREALADAMRLMALASAMIVLGLILVVALDVPYQLWSHARKLRMSKEELRQEHKESEGDP 255
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S ++ R +MM A +I+TNPTHYA+AL Y + AP +VAKG + +A
Sbjct: 256 HVKGRIRSQQQAMARSRMMSKVPTADVIVTNPTHYAVALSYRDGQMGAPRVVAKGADALA 315
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH +P+ E LAR+L+ V ++ IP Y AVA+++ Y +
Sbjct: 316 ARIRELGGEHAVPLLEAAPLARALYYHVDLDREIPVELYTAVAEVLAWAYRLR 368
>gi|222530120|ref|YP_002574002.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
DSM 6725]
gi|222456967|gb|ACM61229.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
DSM 6725]
Length = 366
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 103/344 (29%), Positives = 189/344 (54%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S I + ++
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
LEDIS LL+ + ++ ++V+P + M + Q ++ +K SF++
Sbjct: 76 -NYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAVIVEWAQSSFLITGQSLKMSFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYFYTQTFAKKLLEMYEMNVFTIVRFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ +
Sbjct: 195 GSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIREK 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H I I E LAR+L+ + IPP Y+AVA+++ +Y K
Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358
>gi|160902843|ref|YP_001568424.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
gi|160360487|gb|ABX32101.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
Length = 363
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 98/344 (28%), Positives = 185/344 (53%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P+ +++E A EGN P S E ++ S L+ ++L F P + + + L+
Sbjct: 21 DKTEDPTPRRLEKAREEGNIPQSNEFNMAVSFLSISLFLWIIFEPLLNDIFKVFYDYLSL 80
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ ++ +I ++ ++ +IQ + +K
Sbjct: 81 DLD---YSPTDLLGYEITAHMNLYIKLILFFVVAVVVSTLLGMIQTKFLFTFKSLKLDLS 137
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +G KR++S+ ++V +K+ +K+ ++G + + N+F +L
Sbjct: 138 KINPIKGFKRLFSLRSVVELIKALLKLTILGLLTYNIIKSNWFKILSLAGEETGFSFNVI 197
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V +L + + + L++ D + +++ +LKMSK E+K E K+ GNP IK RQ+
Sbjct: 198 FDLVINILFQLGIVLLLLSLFDFWYQRYEYKKELKMSKYEVKQERKEIEGNPEIKQRQRE 257
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+ R +MM+ A ++ITNPTHYA+A+ Y E AP++VAKG++ +A K+R+IA+
Sbjct: 258 LMRNLARSRMMQKVPEADVVITNPTHYAVAIEYKAEEMQAPIVVAKGKDEVAFKIREIAF 317
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+H IPI E P+LAR ++++V +N IP Y VA+++ +Y
Sbjct: 318 KHGIPILERPALAREIYEKVELNEEIPEDLYTLVAEVLAYVYKL 361
>gi|266621912|ref|ZP_06114847.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
13479]
gi|288866385|gb|EFC98683.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
13479]
Length = 355
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 163/346 (47%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
D KTE + K+ +D +GN S + S+L L ++ + + + +
Sbjct: 6 DEKTEKATPKRRQDERKKGNVFQSSDVIAVCSLLVLFNSLNALAPMIYRTLKASMELFFS 65
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A + + L + +P L + + + + Q + + +K
Sbjct: 66 YAASTEPLTAEDLPDKLLKAMFLFGQAALPLLFIGVAVAVVTTFFQTRLSFSADVMKFKM 125
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+SL +G KR++SI ++V +K+ +KI ++ +I + + + +
Sbjct: 126 DRISLLKGFKRMFSIRSVVELLKAMIKITILAWVIYSYIKGRIHEFARLMDGTVQAAFVY 185
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
T ++ + L D + + ++ L+MSKQEIKDE KQ+ G+P IK R +
Sbjct: 186 VGDTAVSLVNTVGAAFIFLAAFDYLYQWWEYEKNLRMSKQEIKDEYKQTEGDPQIKGRIR 245
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +II NPTH+A+AL Y N APV++AKG + +A K+ ++
Sbjct: 246 EKQRQMASMRMMQNVPKADVIIRNPTHFAVALGYDSNTNRAPVVLAKGADHLALKIVEVG 305
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + I E+ LAR L+ V ++ IP FY+ VA+++ +Y K
Sbjct: 306 EANGVYIMEDKPLARGLYASVEVDMEIPEEFYQTVAKVLAFVYKLK 351
>gi|329849682|ref|ZP_08264528.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
C19]
gi|328841593|gb|EGF91163.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
C19]
Length = 358
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 186/354 (52%), Gaps = 1/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTE S+KK+ A +G+ S + S++ + + +
Sbjct: 1 MAEEPDSEDKTEEASAKKLSQAREKGDVAKSADLPQALSLIGACAVIALYGPSLSSDLVD 60
Query: 61 DLHVLLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
DL LA Q + V ++ + + +VI + + ++ GIG +++Q +
Sbjct: 61 DLIPFLAHPQQLLGSLEGDGGVTIMREMVFAFLPIVIIVMGVTLLLGIGGHVMQTGLMFT 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KPS +++ G KR++ + L+ F K+ VK+I+ G I+ L + ++ A
Sbjct: 121 TEKLKPSLTKLNPMSGFKRLFGFDALIQFAKTVVKLIITGAIVWQVLKGKLYEIMALAKA 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P IL +A + I + +F+ D W ++ ++KMSKQE K+E KQ G+
Sbjct: 181 SPLLILPYAMDVFVALAIAVCIFLFIEGAADYMWQRFRFMQRMKMSKQEQKEEYKQMEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK + + I + R +MM AT++ITNPTHYA+AL++ + AP+ VAKG + +
Sbjct: 241 PHIKAKLRQIRMEKSRRRMMSNVKDATVVITNPTHYAVALQFEMGQMQAPLCVAKGVDTL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+ A +HN+PI E+ LAR+L+ + ++ IP + AVAQ+I + KK
Sbjct: 301 ALKIREEAGKHNVPIVEDVPLARALYAAIDVDETIPEEHFAAVAQVISFVLAKK 354
>gi|229918645|ref|YP_002887291.1| flagellar biosynthesis protein FlhB [Exiguobacterium sp. AT1b]
gi|229470074|gb|ACQ71846.1| flagellar biosynthetic protein FlhB [Exiguobacterium sp. AT1b]
Length = 364
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 177/346 (51%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ED+ +G S + + ++ A + L FF + + + LL
Sbjct: 17 GEKTEKATPRKREDSRKKGQVAKSADLTGAFALFAMFLMLSFFGPVIGQQLLTLISDLL- 75
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
S + ++ L L ++ P ++ ++FGI +Q + +L ++P
Sbjct: 76 SPEYLLFNVTGGMSDMVVDLMLRVGLILAPFFIVAVVFGILINYLQIGTLFSLEAIQPKL 135
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R+ +G+KRI S+ +V F+KS K++++ T L +N + +
Sbjct: 136 ERIDPIKGVKRIVSMKAVVEFLKSLFKLLIILTTAVAVLWKNQKELSRMAVEQVRESIVA 195
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
++ + + + + L LD + + ++MSKQ+IKDE K + G+P+IK++ K
Sbjct: 196 LASITIELGLWVSVALLALAFLDFFYQRFDFEKSIRMSKQDIKDEYKNTEGDPLIKSKIK 255
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+ +RY T++ AP++VAKG + +A +R +A
Sbjct: 256 QQQREMAMRRMMQEIPNADVVITNPTHYAVVIRYDDTKDFAPLVVAKGVDRVAFHIRDVA 315
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ I E LAR+L+ Q+ I + FY+A+A+++ +Y K
Sbjct: 316 KEHDVAIVENKPLARALYAQIDIGEVVDESFYQAIAEVLAFVYQMK 361
>gi|328545474|ref|YP_004305583.1| flagellar biosynthetic protein FlhB [polymorphum gilvum
SL003B-26A1]
gi|326415215|gb|ADZ72278.1| Flagellar biosynthetic protein FlhB [Polymorphum gilvum
SL003B-26A1]
Length = 358
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 128/354 (36%), Positives = 208/354 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + KTE P+ KKI DA+ +GN P S+EAS+ ++ LA L+ F G + S
Sbjct: 1 MSDQPDKETKTEEPTEKKIRDAIEKGNTPTSKEASVLATFLAILLIGSFATVTGARRLVS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ A L + + + L L+L A R + P + + G+ + Q P +
Sbjct: 61 GLSGLIDDAGGFTLGNGADALLLTHALALEAGRFLAPIVATLAVAGLAAAWFQNAPRIVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP R+SL +G +R++ I V F K+ +K + I + L N +++ + ++
Sbjct: 121 HRIKPDPSRLSLLKGWQRLFGIQGAVEFGKALLKFGAISLIALLLLRANEAGLVNAMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ ++L I + L D+ W+ W L+M++QEIKDE KQ+ G+P
Sbjct: 181 PSALPETILHLAMRLLSGICIATIVLVAFDLVWARVHWRQNLRMTRQEIKDEHKQTEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K RQ+S+AR R R++MM A +AT++I NPTH+A+ALRY + E AP++VAKGQ+LIA
Sbjct: 241 LVKARQRSLARDRARNRMMAAVPKATLVIANPTHFAVALRYDRDETAAPIVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
K+R+IA +++IP+ E LARSL+ I+ IPP FY+ VA++I +Y +K+
Sbjct: 301 LKIRQIAEDNDIPVIENRELARSLYASTEIDRMIPPQFYRMVAEVICYVYSRKM 354
>gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-63q42]
Length = 516
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK + +GN SRE + ++LA + + FS + ++ S L+
Sbjct: 162 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 221
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ + + S++ L+ + ++ +P + F++ GI + L Q + +KP
Sbjct: 222 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 280
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+ +++ G K ++S+ +L +K I ++ I +NY +L + +++
Sbjct: 281 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 340
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K +
Sbjct: 341 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 400
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 401 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 460
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K
Sbjct: 461 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 508
>gi|87119470|ref|ZP_01075367.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
gi|86164946|gb|EAQ66214.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
Length = 380
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE SSKK+++A N+GN P S++ S +L L S +++
Sbjct: 1 MAENEDGAEKTEDASSKKLDEARNKGNLPRSKDLSSALLLLIAAASLYATGSLLAQDMSN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + D + +V L+ S+S ++ +++ + GI + +
Sbjct: 61 VFQFNFV-LSRADMFDTAKMVIHLSDSSISMMDSLLVMMIVLAIAGIVGSVALGGFNFSW 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++S+N+LV +KS K+ LV + L ML +
Sbjct: 120 EPLIPKLSKMNPISGIKRMFSVNSLVELLKSIAKVSLVLVVAFFVLKIYLPEMLLVPFQS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L HA V I + L + + +D+ + KLKM+KQE KDE K + G+P
Sbjct: 180 LELALGHAINVVIWAFIYVSLAVLLIAAVDVPYQAWSHKDKLKMTKQETKDEYKNAEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + R +MME A +IITNPTH+++AL+Y AP L+AKG + +A
Sbjct: 240 QIKARIRQAQRQASMRRMMEDVPNADVIITNPTHFSVALKYEAGVKGAPKLLAKGNDFVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+I HNIP+ + P+LARS++ I IP +++VAQ++ +Y K
Sbjct: 300 LKIREIGTFHNIPVVQSPALARSIYHYTEIGEEIPTGLFQSVAQILAYVYQLK 352
>gi|294339803|emb|CAZ88166.1| Flagellar biosynthetic protein FlhB [Thiomonas sp. 3As]
Length = 373
Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K S K+ + A +G SR+ + S +L + +++ Y +
Sbjct: 1 MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + +D + ++ + + ++ P L L + + V +
Sbjct: 59 ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFVASAAGGVAMGGWVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+ +GI R++SI L K+ +K I++ I I + +L +
Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGELLGLLQVE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + + + +D+ W Q KLKMS+Q+++DE+++S GNP
Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R R R +MM A +A +++TNPTHYA+AL Y + +N APV++A G + +A
Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+L+ + IP Y AVA L+ ++ +
Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALYHHAELEQEIPVALYNAVALLLAYVFQLR 351
>gi|319787087|ref|YP_004146562.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
11-1]
gi|317465599|gb|ADV27331.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
11-1]
Length = 379
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ KTE P+ ++ E A+ +GN P SRE S + + + S
Sbjct: 1 MAENEDGQEKTEQPTGRRREKAIKQGNLPRSRELSNA-VLFGSGVVAMMAGGSMFARGAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ LE + + L L +++P + + + + +
Sbjct: 60 GWFRQALTPDLVMLESPGELFGYMGILLLRLVLVMLPLIGVALAACFVAPGLMGGFHFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +R++ G+KRI+S LV KS +++ L+ + L + + +
Sbjct: 120 ESLQPKPERLNPLAGLKRIFSSEGLVEVAKSLLRVALLVIACGLVLVHGFDVLKAMPGQS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L + + L + D + W KLKM++QE+++E+K++ GNP
Sbjct: 180 LEDAASTGLHFAGRLLGAAAVALVLLALADAPYQKWNWTRKLKMTRQEVREEMKETDGNP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + +MMEA A +++ NPTHYA+AL+Y AP +VAKG + +A
Sbjct: 240 QVKGKIRQMQFQMSQRRMMEAVPTADVVVVNPTHYAVALKYEGGTMRAPKVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A +H I P LAR+L+++ I+ IP Y AVAQ++ +Y +
Sbjct: 300 MRIREVADQHRIATVSAPPLARALYREGEIDKEIPVRLYAAVAQVLSYVYQLR 352
>gi|320177760|gb|EFW52748.1| Flagellar biosynthesis protein FlhB [Shigella boydii ATCC 9905]
Length = 383
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 177/335 (52%), Gaps = 1/335 (0%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
+E A EG P SRE + +L + + F ++ L L + D +
Sbjct: 18 LEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLSAGL-HFDHSIINDPN 76
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
I+ + L A ++P + ++ + S ++ V + ++P F +++ GIKR
Sbjct: 77 LILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKR 136
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A V ++
Sbjct: 137 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 196
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + R+ R +M
Sbjct: 197 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 256
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+N+P E P
Sbjct: 257 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 316
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 317 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
>gi|26991041|ref|NP_746466.1| flagellar biosynthesis protein FlhB [Pseudomonas putida KT2440]
gi|24986073|gb|AAN69930.1|AE016632_1 flagellar biosynthetic protein FlhB [Pseudomonas putida KT2440]
Length = 380
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ +
Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 LMRMNF-SLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSFVAPIALSGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S+ L +K+ K ++ + + L+ + +L +
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EHNI I E P+LAR+++ + IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|325273555|ref|ZP_08139785.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
gi|324101315|gb|EGB98931.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
Length = 380
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ D+ +G S+E + + LA LL F ++ +
Sbjct: 1 MAESESGQDKTEDPTEKRKRDSREKGEVARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 LMRMNF-SLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S++ L +K+ K ++ + + L + +L +
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAVVVLINDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + +Q + KLKM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKLKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A +A +IITNPTHYA+AL+Y + AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|209963536|ref|YP_002296451.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
gi|209957002|gb|ACI97638.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
Length = 373
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 109/349 (31%), Positives = 185/349 (53%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE KTE P+ +K+++A +G+ P+SRE S +LA +I + S +T
Sbjct: 1 MSERPEDSQKTEEPTQRKLDEARRKGDVPVSREVSSMMLVLAGVILVGGLGSWMGGHLTD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DL L+ + L+ + LL L+ +++P + + + + + Q V
Sbjct: 61 DLLPLVENPGDFPLQAPADAFRLLAWLAGEIGLVLLPAAAILLAAVLLAAVGQNGIVFTT 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +R+S G++R+ S+ LV F+K K+ VG + + L M +
Sbjct: 121 ERLKPKLERISPIAGLRRLVSLRTLVEFLKGLAKVAAVGAALLVVLEPELHRMEALALTD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + ++L+ L+ + +LD+ W W + +M+ QE+K+E +Q+ G+P
Sbjct: 181 VAALPELLTSVLTRLLVATLIASIAIALLDLVWQQFSWRRQQRMTLQELKEEFRQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R R R +M RAT++ITNPTH+A+ALRY +E APV +AKG +L+A
Sbjct: 241 HVKARISQLRRERARQRMFSDIPRATVVITNPTHFAVALRYDLSEAPAPVCLAKGMDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+++R+ A H +PI E P LAR+L K V I + P Y AVA++I +
Sbjct: 301 RRIREAAMGHKVPIVENPPLARALHKSVEIGEEVQPEHYMAVAEVISYV 349
>gi|255021385|ref|ZP_05293433.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
51756]
gi|254969248|gb|EET26762.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
51756]
Length = 375
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 189/354 (53%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +TEA + KK EDA +G P SRE S + +L L S T
Sbjct: 1 MAEEQS-QERTEAATPKKREDARKKGQVPRSRELSTSALLLLSASLLYGLGSEIQTMATD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L T + + ++ L ++ A V+P L M+ + + + +
Sbjct: 60 FLRAGLR-LTPAVMSNHQDLLRHLVQMAGLALSDVLPLWLALMLVVVLASIALGGWNFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F + EGI+R++S + +K+ +K ++VG I + +L I +
Sbjct: 119 KTLIPNFSHLDPIEGIQRLFSRRGFLELVKAALKTLVVGGIGVTVIWAQRGELLGLIQIS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P S + V +++ + + + D+ + + KLKMS+Q+IKDE+K+ GNP
Sbjct: 179 PKSAMVSLLSMSGLVFLIMAVGTLLIVLFDVPFQLWSFNEKLKMSRQDIKDEMKEMDGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + +S+ R R +MM A A++++TNPTHYA+ALRY+++EN APV++AKG +A
Sbjct: 239 QIKTKVRSMQREMARRRMMAAIPSASVVVTNPTHYAVALRYVESENRAPVVLAKGAGNVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
++R++A EH +P+ E P LAR+L+ V + IP + Y+AVA+++ ++ ++
Sbjct: 299 LRIRELAQEHGVPLVEAPPLARALYHHVELEQEIPALLYRAVAEVLAYLHQLRL 352
>gi|313497812|gb|ADR59178.1| FlhB [Pseudomonas putida BIRD-1]
Length = 380
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ +
Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 LMRMNF-SLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S+ L +K+ K ++ + + L+ + +L +
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EHNI I E P+LAR+++ + IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|307546924|ref|YP_003899403.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
gi|307218948|emb|CBV44218.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
Length = 388
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 95/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+++ + + KTE + +++E A EG SRE + F +LA ++ L +
Sbjct: 1 MADDSSSDEEKTEDATPRRLEKAREEGQVARSRELATFMLLLAGVLGLASLGGTLYDQIG 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ +R+ + S ++ L ++P LL + + + + +++
Sbjct: 61 GVMEQAFL-FDRRQAMETSPMLAEALMLGRHTLISLLPLFLLLTVVALVAPALLGGWLIS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP +++ +G+KRI+ LV K+ K +LVG++ L + + +S
Sbjct: 120 AKSLKPQASKLNPLKGLKRIFGTQALVELAKAIAKSVLVGSVGMAYLYLHRGEFMALMSQ 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
H L A + +++L + + ++D+ + +L+M+K E+K E K+S G+
Sbjct: 180 PIHQALARAMGMAAEACGLMVLTLLVVILIDVPYQLWSHAKQLRMTKDEVKREHKESEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R + ++ R +MM A +IITNPTHYA+AL Y QT AP +VAKG + +
Sbjct: 240 PQVKGRIRQQQQAMARGRMMSQVPEADVIITNPTHYAVALVYEQTGMAAPRVVAKGADAV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R++ E +P+ E LARSL+ V + + IP Y AVA+++ + K
Sbjct: 300 AARIRELGEEAGVPLLEAAPLARSLYHHVDLEAEIPAALYTAVAEVLAWAFGLK 353
>gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile 630]
gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile]
Length = 604
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK + +GN SRE + ++LA + + FS + ++ S L+
Sbjct: 250 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ + + S++ L+ + ++ +P + F++ GI + L Q + +KP
Sbjct: 310 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 368
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+ +++ G K ++S+ +L +K I ++ I +NY +L + +++
Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K +
Sbjct: 429 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 488
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K
Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596
>gi|150395473|ref|YP_001325940.1| flagellar biosynthesis protein FlhB [Sinorhizobium medicae WSM419]
gi|150026988|gb|ABR59105.1| flagellar biosynthetic protein FlhB [Sinorhizobium medicae WSM419]
Length = 360
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 155/350 (44%), Positives = 245/350 (70%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ D+KTEAPS KKI DA ++GN P SRE + F+S LA I+++FF + G +V
Sbjct: 1 MADDQDKDSKTEAPSEKKISDATDKGNVPFSREVTAFASTLAIYIFVVFFLADGAANVAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + +L+ + V L++H+ L ++ L++P +L ++FG+GS + Q +P L
Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKSATLLMPIFILLILFGVGSSIFQNLPRPVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + RVS G KRIY + LV F KS K+I+V ++ + L +YF LD + ++
Sbjct: 121 DRIQPKWNRVSPVAGFKRIYGVPGLVEFGKSLFKVIVVSIVVVLVLWNDYFATLDMMFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I +++++I++L ATL ++D+ W+ H WY++LKM+KQE+KDE+KQS G+P
Sbjct: 181 PVMIFTTMTSDLKQIIIVVLFATATLAIVDLFWTRHHWYTELKMTKQEVKDELKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSLQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350
>gi|17549613|ref|NP_522953.1| flagellar biosynthetic FlhB transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17431867|emb|CAD18545.1| probable flagellar biosynthetic flhb transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 387
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D+ KTE S++++E A EG+ P SRE F + + L + + +S
Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGALGLWVMGESIVRTASS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + +V+ GL+L ++ S L ++
Sbjct: 60 FLARCLE--FHRYDYTRAQEQWQYVGAQFGPLAMVLAGLILMLVLAALSPLALTRGAVSF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ L+ + K++LVG + + ++ +
Sbjct: 118 KPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPRQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350
>gi|310659024|ref|YP_003936745.1| flagellar export pore protein [Clostridium sticklandii DSM 519]
gi|308825802|emb|CBH21840.1| flagellar export pore protein [Clostridium sticklandii]
Length = 363
Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 105/346 (30%), Positives = 185/346 (53%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE S KK +D+ +G SRE + ++++A ++ L + ++T +
Sbjct: 15 EEKTEKASPKKKQDSRKKGQVMQSREINTAAALMASVLALKYSGGFMFRTITEATYFFRD 74
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L + +L ++ + ++ V+ + + + + IQ + +K
Sbjct: 75 LLYTDILNESIGGYKILIYMIMYVTKAVVIVIGVGFVAAFITSKIQVGNLFTTETLKIKP 134
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R++ EG KR++S+ + V +KS +KI +VG + L +N +L P Y
Sbjct: 135 ERLNPIEGFKRMFSMRSFVELVKSLLKIGVVGFVGYSYLAKNIGLVLKSQQLKPIQFSYM 194
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
F + I + I + +LD + + + LKMSKQEIK+E KQS G+P IK++ K
Sbjct: 195 IFELSINLAIRMTFAITVIAILDFFYQRYDYEKNLKMSKQEIKEEYKQSEGDPQIKSKIK 254
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTH+A+A++Y + + +AP +VAKG+NLIA+ +++ A
Sbjct: 255 EKQRQAAMRRMMQEIPKADVIITNPTHFAVAIKYDEDKFEAPYVVAKGKNLIAQNIKQKA 314
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E NIP+ E LA++L+K+V I I P Y+AVA+++ +Y K
Sbjct: 315 REVNIPVVENKPLAQALYKEVEIGQMISPQLYEAVAEILAYVYSLK 360
>gi|147678408|ref|YP_001212623.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
thermopropionicum SI]
gi|146274505|dbj|BAF60254.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
thermopropionicum SI]
Length = 357
Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +TE + ++I++A +G S + + + A + L +
Sbjct: 1 MAG--GTQERTEQATPRRIQEARRKGQVARSTDLTGALCLAAMVALLYAVKDEFFLDLQR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + +L L +++L+ P + + ++ + S L+Q + +
Sbjct: 59 YLGWYFSQVAGF-IASEEVPGAVLYDTVLFSAKLMAPFIAVPVVTAVVSNLVQVGFLFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ G++RI+S +LV +KS K ++G I + N +L +
Sbjct: 118 EALNPKLSVLNPATGLQRIFSSRSLVELVKSVFKFTVIGIITYYLIKANLADLLLVFNRP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I + KV + L++LD + +++ L MS+QE+K+E +Q+ G+P
Sbjct: 178 PGGIYREVAGFILKVAGWAAVAYLILSLLDYIYQRYEYKKSLMMSRQELKEEFRQTEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+RQ+ + R+ ++++ +AT+++TNPT A+ALRY Q + AP +VAKG IA
Sbjct: 238 LIKSRQREMRRAISLNRIISEVPKATVVVTNPTSLAVALRYEQGQMPAPKVVAKGAGRIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++IA EH++PI E +AR ++ V ++ IP Y+AVA+++ +Y K
Sbjct: 298 GRIKEIAREHDVPIVENKEIARFIYYNVELDQVIPFEIYQAVAEILALVYRLK 350
>gi|95929867|ref|ZP_01312608.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
684]
gi|95134163|gb|EAT15821.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
684]
Length = 353
Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 180/353 (50%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +TE +SK+ ED +G S+E + + + L+ F+ ++
Sbjct: 1 MAEE-SGQERTEEATSKRREDFRKKGQVAQSKEVNTAALLSLSLLLWYFYGGSFWSQLSW 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + +V +L + + L+ P L+ ++ G + +Q +
Sbjct: 60 LVSHFWEQSGSLAV-TPQSVVQILLFVLQKTAVLLSPLFLMVLVVGFFASFLQIGWLFTG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G R S +LV +KS K+ LVG + ++ + L + +
Sbjct: 119 KPLMPDLTKLDPIKGAGRFVSKRSLVELVKSLAKVALVGYVAYKTVYSEFDNALYLVDMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
LY+ VL+ + L +LD + + K+KM+KQE K+E K+S G+P
Sbjct: 179 VIETLYYVGRVAMAVLMKSCGIMILLALLDFMFVRWEMEEKMKMTKQEQKEEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + +SI + R +MM +A ++ITNPTH ++A++Y Q E DAPV++AKG + +A
Sbjct: 239 HLKAKVRSIQQQMARRRMMAEVPKADVVITNPTHLSVAIKYEQGEMDAPVIIAKGADNLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA E+++P+ E +AR+L+K V + +P ++AVA+++ +Y K
Sbjct: 299 MKIREIARENSVPLVENVDVARALYK-VEVGEVVPEQMFQAVAEILAYVYSLK 350
>gi|322382375|ref|ZP_08056282.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153728|gb|EFX46103.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
larvae B-3650]
Length = 378
Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK E+A +G S E + + LL F + + L
Sbjct: 29 SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 88
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++++ + HL A L+ P ++ ++ + Q + +K
Sbjct: 89 EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 147
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ +L
Sbjct: 148 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 207
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ + I + + LD + ++ L+MSKQEIKDE K+S G+P+IK +
Sbjct: 208 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 267
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA K++++
Sbjct: 268 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 327
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K
Sbjct: 328 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 374
>gi|239628943|ref|ZP_04671974.1| flagellar export protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519089|gb|EEQ58955.1| flagellar export protein [Clostridiales bacterium 1_7_47FAA]
Length = 353
Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 88/345 (25%), Positives = 167/345 (48%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
D KTE + K+ +D +GN S + + S+L L + +++ +
Sbjct: 4 DEKTEKATPKRRQDERKKGNVFQSNDVAAVCSMLVLFHSLKALAPHMYRNFRDAMYMFMG 63
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A +L L +P L + ++ + Q +++ +K
Sbjct: 64 MAADSDSFHQEAGREMLVKAMLLFLESALPLLFIGVLTAVAVTFFQTRMAFSMDVLKFKM 123
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R+S +G KR++SI ++V +K+ +KI ++G ++ + L + + L
Sbjct: 124 ERISPLKGFKRMFSIRSVVELIKALIKITILGWVVYVFLKGRMEELSRLMEGTVEGALIF 183
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
TV ++ + + L +D + + ++ L+MSKQEIK+E KQ+ G+P IK + +
Sbjct: 184 TGNTVISLVDTVGVAFIFLASMDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQIKGKIR 243
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +I+ NPTHYA+AL Y N APV++AKG + +A K+ ++
Sbjct: 244 EKQRQMASMRMMQNVPKADVIVRNPTHYAVALGYDADRNRAPVVLAKGADHLALKIVEVG 303
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ + I E+ LAR L+ V ++ IP +Y+ VA+++ +Y
Sbjct: 304 EANGVYILEDRPLARGLYASVEVDMEIPEEYYQTVAKILAFVYKL 348
>gi|167034909|ref|YP_001670140.1| flagellar biosynthesis protein FlhB [Pseudomonas putida GB-1]
gi|166861397|gb|ABY99804.1| flagellar biosynthetic protein FlhB [Pseudomonas putida GB-1]
Length = 380
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 185/354 (52%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ S
Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 MMRMNF-SLTREVIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S+N+L +K+ K ++ + + L+ + +L +
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A +A +IITNPTHYA+AL+Y + AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EH I I E P+LAR+++ + IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-66c26]
gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile CIP 107932]
gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-76w55]
gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-97b34]
gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-37x79]
gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile CD196]
gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile R20291]
gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-32g58]
gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196]
gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291]
Length = 604
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK + +GN S+E + ++LA + + FS + ++ S L+
Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ + + S I L+ + ++ +P + F++ GI + L Q + +KP
Sbjct: 310 LSLDFYMNI-NYSSIEKLVIAGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+ +++ G K ++S+ +L +K I ++ I +NY +L + +++
Sbjct: 369 NLSKLNPVSGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK +
Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K
Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596
>gi|225569959|ref|ZP_03778984.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
15053]
gi|225161429|gb|EEG74048.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
15053]
Length = 353
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 101/352 (28%), Positives = 183/352 (51%), Gaps = 4/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+KTE + KK D EGN S + + L F + +
Sbjct: 1 MA----ADSKTEKATPKKRRDERKEGNIFQSSDVVNVVFVFLSFYILKLIFPGIYETSGN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ A + +A+R V+P + M+ GI + IQ +
Sbjct: 57 FMKRFISLAGSITDLSGQSVGKYGMEFLSAAARTVLPFACICMVTGIVMHGIQTRFLFTS 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +P R+S +GIKRI+++ N + +K+ +K+I++ II L ++ ++ + +
Sbjct: 117 KNFRPKLNRISPLQGIKRIFALKNAIELVKNLLKVIVLVAIIYTLLKQDAVNVIRTMDMS 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + F + +++ + + A + LD + + + K+KMSKQE+K+E KQ+ GNP
Sbjct: 177 ISASAAYTFDMIISMILRVSMVFAVIAFLDYLFQWWDYERKIKMSKQEVKEEFKQTEGNP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R R +MM+A A +II NPTH+A+AL Y +N+APV+VAKG + +A
Sbjct: 237 EIKGRIRDIQKQRARSRMMQAVPNADVIIRNPTHFAVALSYDTEKNNAPVVVAKGVDELA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ + E+++ + E+ LARSL+ + +N IP +Y AVA+++ +Y
Sbjct: 297 LRIVRTGEENHVAVIEDRPLARSLYAETELNREIPSEYYGAVAEILVYVYKL 348
>gi|78044903|ref|YP_359855.1| flagellar biosynthetic protein FlhB [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997018|gb|ABB15917.1| flagellar biosynthetic protein FlhB [Carboxydothermus
hydrogenoformans Z-2901]
Length = 353
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ +TEAP+ +++ +A G S+E + L + LL
Sbjct: 1 MADEQRDQ-RTEAPTPRRLAEARRRGQVFKSQELNFAVMFLIFFLLLLVLGGYFYQQFYL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S + LL + + ++V+P LLL M+ GI L+Q +
Sbjct: 60 LSRNVFRNMFIEL--TPSAVRGLLLYYFGWSFKIVLPFLLLGMLAGIALNLVQVGFIFTT 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPS++R++ G RI+S N V +K+F+K + +I + + N + I
Sbjct: 118 EPLKPSWERINPLSGFSRIFSRRNWVELLKNFLKFGFLALVIYLRIKSNLPLIFQKIGQA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P F ++K+ + LL + +D + ++Y LKM+KQE+K+E +Q+ G+P
Sbjct: 178 PAEYFNGYFSLIKKIALDTLLVLFLFGAVDYWYQRREYYQSLKMTKQELKEEYRQTEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R + R +++ +AT+++TNP H A+AL+Y + + AP +VAKG +A
Sbjct: 238 LIKARLRERQRQIALNQIAREVPQATVVVTNPVHIAVALKYERGKMAAPKVVAKGAGFLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA HN+ I E +AR L+K + IP Y AVA++I +Y KK
Sbjct: 298 EKIKEIARAHNVEIVENVEVARFLYKNCEVGEEIPEELYNAVAEIIAWVYRKK 350
>gi|268678882|ref|YP_003303313.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
DSM 6946]
gi|268616913|gb|ACZ11278.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
DSM 6946]
Length = 353
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 106/351 (30%), Positives = 182/351 (51%), Gaps = 5/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE +SKKIEDA EGN P S++ S F +++ L L + S +
Sbjct: 1 MA---DDQEKTEEATSKKIEDARKEGNVPKSQDMSAFVTLVVALGAFLAWLSFIESRIIY 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
H + ++++ + L++ +VIP L + GI + ++Q +
Sbjct: 58 LYHYYQSLIGTEITKEVTFQISLISLR--EVVFMVIPLALAVAIAGILANVMQTGFLFTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F ++ +G K ++S+ L+ +K+ +K+ +V I L + I
Sbjct: 116 KPLMPNFGKLDPIKGFKNLFSLKKLIETVKTLLKVSVVMGISYFFLWSFTKELPTVIYFP 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +IL+ + L + D+ ++ +L+MSKQE+KDE KQ G+P
Sbjct: 176 LPDQMAWLKEKMLILAAVILIILLVLALADLMLVRFNYFKELRMSKQEVKDEYKQMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + I R +MM+ A ++ITNPTHYA+A+RY Q + AP ++AKG +L+A
Sbjct: 236 KIKAKIRQIQMQMTRKRMMQEIPGADVVITNPTHYAVAIRYHQDKEAAPKVIAKGTDLVA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++++IA H+I I E P LAR L+K+ I IP YKAVA+++ +Y
Sbjct: 296 LRIKEIALNHHIQIVENPPLARELYKKCNIGELIPENLYKAVAEVLAFVYK 346
>gi|329888173|ref|ZP_08266771.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
11568]
gi|328846729|gb|EGF96291.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
11568]
Length = 358
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 103/355 (29%), Positives = 190/355 (53%), Gaps = 2/355 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ P++KTE + +K+E+A +G+ S + + S+ LL +
Sbjct: 1 MADGPDPESKTEDATPRKLEEARKKGDVAKSPDVAAALSLAGAAGVLLAGGGWFSTRIAE 60
Query: 61 DLHVLLASAT-QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L LA + V + H +A+ + + ++ G+G L Q +
Sbjct: 61 ALTPFLAQPHAMIGGLEAGGGVEIGMHAVWAAAPFLAALMFAVILGGVGGNLAQSGLIFT 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ VKP + +V+ EG KRI+ + LV F+K+F+K++ +G + L + + + +
Sbjct: 121 ADKVKPKWSKVNPLEGFKRIFGPDGLVQFLKTFIKLVAIGAVCWWVLKPHARELENLAAM 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P IL A +++ L+F++ D W ++ +++M+K+E+K++ KQS G+
Sbjct: 181 SPAMILPFARDLALALMLSALVFLSLTAGADYLWQRMRFAKRMRMTKEELKEDFKQSDGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNL 298
P +K + + I R R +MM+A AT+IITNPTHY++ALRY + + APV VAKG +
Sbjct: 241 PHVKAKLRQIRMQRGRQRMMQAVPDATVIITNPTHYSVALRYEPDKGDGAPVCVAKGVDA 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A ++R++A EH +PI E LAR+L+ V ++ IP ++A A++I + ++
Sbjct: 301 LALRIREVAREHKVPIVENVPLARALYAAVEVDGVIPREHFEAAAKVIGFVMQQR 355
>gi|160880828|ref|YP_001559796.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
ISDg]
gi|160429494|gb|ABX43057.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
ISDg]
Length = 373
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 94/355 (26%), Positives = 179/355 (50%), Gaps = 3/355 (0%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
++ KTE ++KK+EDA EG S++ S +LA + + F
Sbjct: 18 AKEGPGGEKTEEATTKKLEDARKEGQVARSQDLITASGLLALFMVIKLFSGYIAGGFLDA 77
Query: 62 LHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
E++++ + L+ + ++ + +P + ++ + Q L
Sbjct: 78 FSKSYKEIETLAKEEMTYQIGSKLMNQMGINILLICLPVFITGVVVAFVVNIFQVKWKLT 137
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
++P F +++ G K++ S++ ++ +KS +K+ ++ I+ +L + +
Sbjct: 138 GKPLQPKFNKINPLSGFKKMLSMDKIMELVKSIIKVGIIIYIVYNALKDELGKLYLLYEM 197
Query: 180 NPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ + + V + I I + + + D + ++ ++M+KQEIKDE KQS G
Sbjct: 198 GNLEVVIAYIGSIVLDLGIKISVLFIVVGLADFIYQKIKFKKDMRMTKQEIKDEFKQSEG 257
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK++ K R + +MM+ A ++ITNPTH+A AL+Y + ++AP+L+AKG +L
Sbjct: 258 DPQIKSKIKQKMRQASQRRMMQRLPEADVVITNPTHFACALKYDKEVSEAPILIAKGADL 317
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A K+++IA E+ IPI E LAR L+ V I S IP Y+ VA+++ +Y K
Sbjct: 318 LAAKIKEIAKENEIPIVENKPLARMLYYNVDIESEIPGELYQMVAEVLAYVYSLK 372
>gi|90423033|ref|YP_531403.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
BisB18]
gi|90105047|gb|ABD87084.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
BisB18]
Length = 358
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 188/353 (53%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D+ KT+ P+ K+++DAL G+ S+E + + I + L F + +
Sbjct: 1 MSDDDSS-EKTQDPTQKRLDDALERGDVAKSQEVNTWFMIAGATLVLSSFSGSVGSGLQN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ ++ + + + + L + + + +P L+L + + ++Q V +
Sbjct: 60 PLRNLIENSWMIRTDGAGLMALTQSLLYAAIAAMGVPFLMLIIAA-LAGNMLQHRLVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F ++S G KR++ NF+K K+I +G ++ L + + I +
Sbjct: 119 EGLKPKFSKISPLAGAKRLFGKQAAANFLKGLFKVIALGAVMVAILWPERYRLDAMIRLD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+I+ K++ ++ +A + + D + Y WY K KMS QE+K+E KQS G+P
Sbjct: 179 IGAIMGLTIALTLKLMAAVVAMLAAVAIADFFFQYRTWYEKQKMSLQEVKEEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I R+R +MM A +A+++ITNPTHY++AL Y AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRHQRMRKRMMAAVPQASVVITNPTHYSVALSYENG-MSAPICVAKGVDSIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A H++PI E LAR+L+ V I+ IP Y AVA++I + K
Sbjct: 298 FKIREVAKAHDVPIIENVPLARALYATVKIDEEIPVEHYHAVAEIIGYVMGLK 350
>gi|325920558|ref|ZP_08182480.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
19865]
gi|325548951|gb|EGD19883.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
19865]
Length = 376
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ + GI S
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFGLMAL-ARGIGDGAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
S + E+ + L L +++P + + + G+ L+ +
Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLAGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++
Sbjct: 120 KAIMPDLNKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASLCISKGLHGLRSLVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIREVCEQHRVSIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
acetobutylicum ATCC 824]
gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824]
gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
acetobutylicum EA 2018]
Length = 610
Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 87/346 (25%), Positives = 175/346 (50%), Gaps = 1/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+KTE + K+ +A +G S+E L ++++A + + +
Sbjct: 261 DSDKTEEATPKRKSEARKKGQVARSKEVPLAATLVAITFIISLGGQTFFNGLGVMMQTFF 320
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
S L ++ + ++ + L+A + + + M+ GI + + Q + +KP
Sbjct: 321 QSYIHSNLTEL-DLRRIIIFVILNAGKFIFMFGVPVMVVGIVANIAQTGWITTTEPIKPD 379
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ G KRI+S+ +VN +K V + ++ + L NY + + + I
Sbjct: 380 LKKLNPISGFKRIFSMTTIVNLLKDLVVVAVLSVVGYKFLMSNYGDIANLNNLMVQYIPQ 439
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V + ++ L + + D ++ +++ +KM+K E+K+E KQ+ G+P IK ++
Sbjct: 440 AYLSYVISIFRIVALIMIVIAGFDFVYNRYKYKKDMKMTKHEVKEEFKQAEGDPEIKGKR 499
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R + M+ AT++ITNPTH ++A++Y + + AP +VAKG + A ++++I
Sbjct: 500 RQRMREIVTRTMLSKVPDATVVITNPTHISVAIKYERGVDKAPTVVAKGADRTALRIKEI 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A E+N+PI E LAR +FK+V ++ IP Y+ VA+++ +Y
Sbjct: 560 AKENNVPIMENKPLARLIFKKVEVDEQIPAEMYQTVAEILALVYKL 605
>gi|325917832|ref|ZP_08180011.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
35937]
gi|325535943|gb|EGD07760.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
35937]
Length = 376
Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+D +TE P+ K++ +A +GN P SRE S + A + L+
Sbjct: 1 MSESDDGGERTELPTEKRLREAREQGNFPQSRELSTAAVFGAGVFGLMALAGGIGDGAAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S R E + L L +++P + + ++ G+ L+ +
Sbjct: 61 WMKTAL-SPDPRMREHPMALFGHFGDLLLQLLWVMLPLIGVCLLAGLAGPLMMSGLHFSS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + ++++ + ++
Sbjct: 120 KAIMPDLTKLNPMNGIKRMWGSNSLAELVKSVLRLLFVGLAAWLCISKSLPGLRALVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIRETCEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|157692318|ref|YP_001486780.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
gi|157681076|gb|ABV62220.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
Length = 362
Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S + + S L + F + + + +
Sbjct: 14 GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ K+ S+I L L L++P L + M+ GI S +Q + + +KP
Sbjct: 74 TTMLMKVST-SNIHQLFVELLQETGLLLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYSI LV +KS +KI L+G I+L ++ +L L+
Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + L+MSKQ+IKDE K+S G+P+IK++ K
Sbjct: 193 VASMTLIMGLYAAGALMVLAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA
Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH+I E LAR+L+ QV I+ A+P ++KA+A+++ +Y K
Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358
>gi|260893861|ref|YP_003239958.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
gi|260866002|gb|ACX53108.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
Length = 356
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 91/347 (26%), Positives = 178/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + +++E+A +G S E S + LA + + ++T +H L
Sbjct: 7 GQEKTEPATPRRLEEARRKGQVARSAELSGALACLALVFVCYLLKEQALLTLTRGMHHSL 66
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ T + L L+ P L ++ IG L Q V + + + P
Sbjct: 67 SFLTGDL--TPASAAVALGFWGRILLELLAPFFLTALVLAIGVNLAQVGFVFSPSVLLPK 124
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
R+S+ G+ RI+S+ LV K+F K+++VG+I + + + + P +
Sbjct: 125 LDRISITRGLGRIFSLQGLVELGKAFFKLVIVGSIAVFVIRQEIPRLFLLLETPPLAGFT 184
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ +++ L L +LD + +++ +L M+K E+K+E+KQ+ G+P++K
Sbjct: 185 LVAGILLRLGVVVGLAYLALGLLDFFYQRNRYRKELMMTKAELKEELKQTEGDPLVKGWI 244
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +++ + +AT+++TNP H A+AL+Y +AP +VAKG +A+K+++I
Sbjct: 245 RRRLRQVSLNRIRQEVPKATVVVTNPLHIAVALKYEP-PMNAPKVVAKGAGFLAQKIKEI 303
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ E P +A+ L+++V + IPP Y+AVA++I +Y +
Sbjct: 304 ARANGVPVVENPPVAQFLYRRVEVGQEIPPALYQAVAEIIALVYRLR 350
>gi|315121857|ref|YP_004062346.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495259|gb|ADR51858.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 354
Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 261/352 (74%), Positives = 312/352 (88%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEND P+NKTE+PSSKKIEDAL++GNAP+SRE LFSS LACLIYLLFF SPGI+ +T
Sbjct: 1 MSENDNPENKTESPSSKKIEDALSKGNAPVSREVYLFSSTLACLIYLLFFVSPGIHDLTY 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D + LAS TQ KL+ +SH+VFLL L S S+L+IPGLLLFM+FG+GSYLIQRIP NL
Sbjct: 61 DFRMFLASVTQWKLDSVSHLVFLLVTLGFSTSKLLIPGLLLFMIFGVGSYLIQRIPSFNL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N+++PS KR+SLREGIKRIYS NNLVNF KS KI++VGT+I ISL +N+ TML+ I++N
Sbjct: 121 NNIRPSLKRISLREGIKRIYSTNNLVNFTKSSFKIVIVGTLIAISLKDNHLTMLESITSN 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P IL+H FFT+RK+LI+ILLFIA LT++DIGW+Y+QWYSKLKMSKQE+KDEIKQSYGNP
Sbjct: 181 PQIILHHIFFTIRKILIIILLFIAILTIIDIGWTYYQWYSKLKMSKQEVKDEIKQSYGNP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+RQKSIARSRIRHKM+EATSRAT++ITNPTHYALALRY+ TEND P+++AKGQNLIA
Sbjct: 241 MIKSRQKSIARSRIRHKMIEATSRATLVITNPTHYALALRYVPTENDVPIMIAKGQNLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+RKIA E NIPIFE+P LARSLF+QVPINS+IPPVFYKA+AQLI+KIY K
Sbjct: 301 SKIRKIASEKNIPIFEDPLLARSLFRQVPINSSIPPVFYKAIAQLIHKIYSK 352
>gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile ATCC 43255]
Length = 604
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 183/348 (52%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE + KK + +GN S+E + ++LA + + FS + ++ S L+
Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ + + S I L+ + ++ +P + F++ GI + L Q + +KP
Sbjct: 310 LSLDFYMNI-NYSSIEKLVITGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+ +++ G K ++S+ +L +K I ++ I +NY +L + +++
Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK +
Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA + IPI E +AR L+KQV I+ IP Y+A A+++ +Y K
Sbjct: 549 IAKGNEIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596
>gi|194014696|ref|ZP_03053313.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
gi|194013722|gb|EDW23287.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
Length = 362
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S + + S L + F + + + +
Sbjct: 14 GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ K+ S+I L L L++P L + M+ GI S +Q + + +KP
Sbjct: 74 TTMLMKVST-SNIHQLFVQLLQETGILLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRIYSI LV +KS +KI L+G I+L ++ +L L+
Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + L LD + + L+MSKQ+IKDE K+S G+P+IK++ K
Sbjct: 193 VANMTLIMGLYAAGALMILAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA
Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH+I E LAR+L+ QV I+ A+P ++KA+A+++ +Y K
Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358
>gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
Length = 614
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 189/347 (54%), Gaps = 1/347 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
D KTE + KK D+ +G S++ L +++A ++ ++ + S+ ++
Sbjct: 261 GADEKTEEATPKKKSDSRKKGQIARSKDVGLAITMIATVLVVVALSGFIVSSLKDNVVYF 320
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L ++ + + I + T + A+ +++P +L M+ G+ + L+Q ++ + +KP
Sbjct: 321 LGDMGSMEVTE-NSIKGINTLIISKAAMVIMPVILPIMIAGVAASLVQSGFLVVKDAIKP 379
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
SF +++ G K ++S +LV +K+ + I +V I + +N+ ++ + ++
Sbjct: 380 SFGKLNPINGFKNMFSKKSLVELIKNLILIAIVIFIAYSYIRDNFDKIMQIGNLYLPTLG 439
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + + I + + + ++D Y + ++M+KQEIK+E KQ G+P IK++
Sbjct: 440 IEVKSLIVGIFVKICILLVVIAIIDYVVQYMLFQKDIRMTKQEIKEEYKQMEGDPQIKSK 499
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R + +MM++ AT++ITNPTH A+A++Y + + +AP +VAKG + IA K+++
Sbjct: 500 IKQRQREMSQRRMMQSVGDATVVITNPTHLAVAIKYEEGKTEAPKVVAKGADTIAIKIKE 559
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A E +PI E LAR +F+ V I+ IP Y+AVA+++ +Y
Sbjct: 560 KAIESKVPIIENKPLARMIFESVEIDKEIPQDMYQAVAEVLAMVYKL 606
>gi|222147560|ref|YP_002548517.1| flagellar biosynthesis protein FlhB [Agrobacterium vitis S4]
gi|221734548|gb|ACM35511.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
Length = 361
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 158/350 (45%), Positives = 239/350 (68%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++++ ++KTE+PS KK+ DA +GN PISREA LF++ LA IY +FF G+ ++
Sbjct: 1 MADDEDQESKTESPSEKKMRDAAEQGNLPISREAPLFATTLAFYIYFVFFMPQGVSTLYQ 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ Q + + ++ L HL S + ++ P LLLFM+FG+ Q +P L
Sbjct: 61 TLRDLMEKPDQWIIGTGTDVISLFVHLGWSMAAMLGPALLLFMLFGLTQSFAQHLPSFVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P +R+SL GI R++S+ V F KS KII+V I+ +S+ YF LD + ++
Sbjct: 121 DRITPKMERLSLIGGIGRMFSVMGFVEFGKSLFKIIVVAIIMFVSMRGQYFGTLDAMLSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I V+++LI++L LTV+D+GW + WY KL+M++QE+KDE KQS G+P
Sbjct: 181 PQIIFVKLSDIVQEMLIIVLFATGLLTVMDLGWQRYNWYQKLRMTRQEVKDEHKQSQGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K RQ+S R + R +MM RAT+IITNPTH+A+ALRY++TE +AP+++AKGQ+LIA
Sbjct: 241 VVKARQRSAQRDQARRRMMNNVPRATMIITNPTHFAVALRYVRTEMEAPIVLAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
K+R+IA E+NIPIFE+P LARS+F QV ++S IPP+FYKAVA+++ ++Y
Sbjct: 301 LKIREIAEENNIPIFEDPPLARSMFAQVSVDSVIPPIFYKAVAEIVQRLY 350
>gi|77918767|ref|YP_356582.1| flagellar biosynthesis protein FlhB [Pelobacter carbinolicus DSM
2380]
gi|77544850|gb|ABA88412.1| flagellar biosynthetic protein FlhB [Pelobacter carbinolicus DSM
2380]
Length = 351
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 183/353 (51%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ +TE + K+ D +G S+E + + L+ F+ +++
Sbjct: 1 MA--DSDQERTEQATGKRRADFRQKGQVAQSKEVHTAALMTGTLLLWTFYAPLFWRTLSD 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH L + A ++ +S ++ LL L + L+ P +L ++ GI S +Q +
Sbjct: 59 MLHHLWSLAGDFEVTPVSAVM-LLGQLGQKIALLLAPIMLTTLVIGILSSYLQVGWLFTT 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+ ++ S + + +KS +K+ LVG + + + LD + +
Sbjct: 118 KPLAPDFSKMNPVPGLAKLISKRSFIEVVKSLLKVFLVGVVAYKVILAEFGQALDLVDMD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + ++L+ + L +LD + + K+KM+KQE K+E K+S G+P
Sbjct: 178 INDSVVYLARVAARILLRTCGVMILLALLDFLFVRWEMEQKMKMTKQEQKEEHKESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R +S+ R +MM +A ++ITNPTH ++AL Y ++ AP +VAKG + +A
Sbjct: 238 QIKARIRSMQMQAARRRMMAEVPKADVVITNPTHLSVALAYDRSRMSAPQIVAKGADAVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA EH +P+ E +AR LFK V + +P ++AVA+++ +Y K
Sbjct: 298 MRIREIAREHKVPLVENKPVARVLFK-VDLGKDVPEEMFQAVAEILAYVYGLK 349
>gi|237755398|ref|ZP_04584025.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692439|gb|EEP61420.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 350
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 174/344 (50%), Gaps = 3/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + K+ + A EG S + S+ +S+ I L+F+ + ++
Sbjct: 7 KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLVGYFKYTFSNP 66
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + + L +P +L+ + GI S +IQ + L + P +
Sbjct: 67 LYLI---PDNGSMFIWFTLKILAILTLPVILILFIVGIASNVIQFGFLFTLKPLTPKLDK 123
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
+++ GIKRI+S+ L +K+ K+ + + + L +++ + ++ +Y
Sbjct: 124 LNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGSINNQIYVLS 183
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
T+ +++ + + D + +++ LKM+K E+K+E K GNP++K +
Sbjct: 184 KTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNPLVKREIRKR 243
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA+K++++A E
Sbjct: 244 MRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVIAKGQDLIAQKIKEVAKE 303
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H I I E+P LAR+L+ I IP Y+AVA+++ +IY K
Sbjct: 304 HGIKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKAK 347
>gi|313905147|ref|ZP_07838516.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
gi|313470050|gb|EFR65383.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
Length = 354
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 169/351 (48%), Gaps = 6/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +D KTE P+ K+ +A EGN S++ + +LA + L + ++ S
Sbjct: 1 MANDD----KTEQPTEKRKREAREEGNVFHSKDIVTVAVLLAGTMILRLRITDIQTTIKS 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L +S L+ +L A+ +P L + Q
Sbjct: 57 MFFEVLNLMKGSTQNMLSR--HLMVSFALDAAVCALPIGLAAAFIEFVAGGAQTRFNFAK 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP KR++ G+KR++S+ +V +K+ K +++ + + L ++ + I
Sbjct: 115 KALKPQAKRMNPLNGLKRMFSLKGVVEALKNIAKTVVLVVFVYLILKDDIVPIAKMIDEP 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
F + +++ I L + + D + HQ+ L M+KQE+KDE K + GNP
Sbjct: 175 ISQANSQLFSMMFNLVLRICLAFSVIAAFDFMFQKHQYKKSLMMTKQEVKDEYKNTEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R K R + +M++ A +II NPTH A+A++Y +APV++AKG + +A
Sbjct: 235 EIKGRIKKKQREIAQRRMIQQVPSADVIIRNPTHVAVAIKYDPERAEAPVVLAKGVDSVA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++ ++ E+ +P E LAR+L+ +N IP +Y AVA+L+ IY
Sbjct: 295 LRIIEVGEENGVPWIENKPLARALYGACELNDQIPSEYYGAVAELLVYIYK 345
>gi|254473324|ref|ZP_05086721.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
gi|211957440|gb|EEA92643.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
Length = 353
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 121/353 (34%), Positives = 207/353 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+ PD+KT+ P+ KK+ DAL +GN P+S+EAS+ +S+L L+ L F +
Sbjct: 1 MSEDQDPDSKTQEPTEKKVRDALEKGNIPVSKEASVLASMLGLLLILSFIAVDKAQGLVQ 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + + L++ ++ + P + L + FG+ S +Q P L L
Sbjct: 61 FLKWFLDNPGEISFVSAAEPLQLMSAVAFELVWFLGPIVALLIFFGLASSFMQNTPRLVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P ++SL++G R++S+N + F+KS K++ V + + L L + ++
Sbjct: 121 DRIEPKLSKISLKKGFGRLFSVNGAMEFIKSLFKLVTVIVVAALVLKSQQAVALTSMYSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +L I + L D+ + QW L+MS QE+KDE KQ+ G+P
Sbjct: 181 PTQLPQLILSVAMTLLSGICVATIFLVGFDLVLARFQWRKNLRMSHQELKDEFKQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R +S+AR R R +MM + AT+++ NPTH+A+AL Y + + AP +VAKGQ++IA
Sbjct: 241 LIKARLRSLARDRARKRMMSSVQDATVVVANPTHFAVALYYERDGDQAPRVVAKGQDIIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++++AY H++P+ E+ LARSL+ V I+ +IP +Y+AVA++I +Y K+
Sbjct: 301 LKIKELAYIHDVPVVEDRQLARSLYAAVEIDQSIPEEYYRAVAEIISYVYLKR 353
>gi|296135634|ref|YP_003642876.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
gi|295795756|gb|ADG30546.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
Length = 373
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K S K+ + A +G SR+ + S +L + +++ Y +
Sbjct: 1 MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + +D + ++ + + ++ P L L + + V +
Sbjct: 59 ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFLASAAGGVAMGGWVFST 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R+ +GI R++SI L K+ +K I++ I I + +L +
Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGALLGLLQVE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + + + +D+ W Q KLKMS+Q+++DE+++S GNP
Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R R R +MM A +A +++TNPTHYA+AL Y + +N APV++A G + +A
Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A EHN+P+ E P LAR+LF + IP Y AVA L+ ++ +
Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALFHHAELEQEIPVALYNAVALLLAYVFQLR 351
>gi|291558215|emb|CBL35332.1| flagellar biosynthetic protein FlhB [Eubacterium siraeum V10Sc8a]
Length = 353
Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats.
Identities = 96/351 (27%), Positives = 180/351 (51%), Gaps = 6/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + KTE + KK +D +G S+E ++ ++ +L F + + +
Sbjct: 1 MA----GEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++S + + + + +++ V P L + ++ + ++Q + ++
Sbjct: 57 FMEQSMSSIDKTG-NTVEFAMSVFWKVAIICVCTVGPILAVGVVLSVLPVIVQTKGLFSM 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F R++ GIKR++S+ LV +K ++II+V I+ + + I +
Sbjct: 116 EAMKPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTD 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I+ + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P
Sbjct: 176 VIKIVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLI 299
IK + K + + +MM+ A +++ NPTHYA+AL+Y + APV+VAKG + +
Sbjct: 236 QIKGKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDAL 295
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
A ++ +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y
Sbjct: 296 ALRIVAVAEEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346
>gi|300697969|ref|YP_003748630.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
gi|299074693|emb|CBJ54250.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
Length = 387
Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 173/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S++++E A EG+ P SRE F + L + + ++
Sbjct: 1 MSEE-SDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLAVSAGGLWVMGESIVRAASA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + V+ GL+L ++ + L ++L
Sbjct: 60 FLARCLE--FHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISL 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ L+ + K+ LVG + + ++ +
Sbjct: 118 KPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDDFVELPRQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LAAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350
>gi|166712016|ref|ZP_02243223.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 376
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 179/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ T+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDGATA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S E+ + +L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPTMRENPMALFGHFGNLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|57168473|ref|ZP_00367607.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
gi|305432892|ref|ZP_07402050.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
gi|57020281|gb|EAL56955.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
gi|304444046|gb|EFM36701.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
Length = 362
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 107/350 (30%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF +T+
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVITLFMMGFIGERITN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ L+ P +L M+ GI ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLILLAPIVLSIMIAGILGNVMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ LV +K +K+ +V T+ I L + + N
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIVLKVGVVFTVAFIVLLKFMQELPLVERYN 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++++ + VLDI Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 IIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY T+ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTTKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AY++N+ ++E P LAR L+K IN IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREMFKAVAEVLGFVY 346
>gi|158422263|ref|YP_001523555.1| flagellar biosynthesis protein FlhB [Azorhizobium caulinodans ORS
571]
gi|158329152|dbj|BAF86637.1| flagellar biosynthetic protein [Azorhizobium caulinodans ORS 571]
Length = 359
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 121/351 (34%), Positives = 206/351 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ ++KTE + +K+ DAL +GN P SRE +LF+S+L L L FF + +T
Sbjct: 1 MSDDTDKESKTEEATERKVSDALEKGNVPYSRETALFASLLGILGVLTFFVVNPVRILTV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L L + L + L + L ++++P +LL G+ + L Q P L L
Sbjct: 61 ELTHFLDNPAGFTLAGSDDAIALAWGVLLLMGQVLLPAVLLLAAAGLAASLFQNTPRLVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N ++P F R+ +G RI+S + + F KS K+++V I + L +++ + ++
Sbjct: 121 NRIQPQFSRIDPMKGWTRIFSRDGGIEFGKSAFKLVVVAVICGVLLMSERDKVMNAMYSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + L LD+ WS W ++L+M+KQE+K+E+KQ G+P
Sbjct: 181 PLLMPSVILSLATRLISAVCVATIVLVALDLVWSRFHWRAELRMTKQEVKEEMKQQEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R +S+A+ R R +MM + +AT+++ NPTHYA+AL Y + + AP +VAKG +LIA
Sbjct: 241 MVKARMRSLAQQRARQRMMSSVPKATLVVANPTHYAIALYYDRQKGGAPQVVAKGTDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+R+IA +IP+ E+ LAR+++ V ++ IPP FYK VA+++Y IY
Sbjct: 301 LKIREIAERCSIPVIEDKPLARAMYDAVEVDQWIPPEFYKPVAKILYFIYS 351
>gi|312126838|ref|YP_003991712.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
hydrothermalis 108]
gi|311776857|gb|ADQ06343.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
hydrothermalis 108]
Length = 366
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 102/344 (29%), Positives = 186/344 (54%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S I + ++
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIEPLQQGSKYFFSNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
LED+ LL+ + ++ ++V+P L M Q ++ +K SF++
Sbjct: 76 -NYNLEDVRDASRLLSFIITTSLKMVLPFCLTIMFVATIVEWAQSSFLITAQSLKMSFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ +
Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H I I E LA++L+ I IPP Y+AVA+++ +Y K
Sbjct: 315 HRIEIVENRELAKALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358
>gi|207725003|ref|YP_002255400.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
gi|206590230|emb|CAQ37191.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
Length = 387
Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S++++E A EG+ P SRE F + L + + ++
Sbjct: 1 MSEE-SDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMGESIVRAASA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + V+ GL+L ++ + L ++
Sbjct: 60 FLARCLE--FHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ L+ + K++LVG + + ++ +
Sbjct: 118 KPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPRQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LVAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350
>gi|289523553|ref|ZP_06440407.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503245|gb|EFD24409.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 367
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 86/346 (24%), Positives = 163/346 (47%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + ++ A EG S + +IL ++ L ++ L+
Sbjct: 16 EEKTEPATPRRRRKAREEGQVAKSMDLVSSVAILTGVLLLFAMGFFLFSTLKQFFVWELS 75
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ I + P +L + + Q ++ + P
Sbjct: 76 HLSDDVNFRGQWIWRASARGLAVYLKTWFPLAILSALGVVLISFAQVGFLITPKPLVPKL 135
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ G+K++ S+ +LV +K +K L+ +++ L ++ T+L + L
Sbjct: 136 NRLNPVSGLKKVLSLRSLVELIKGLLKATLLASVLYFGLKKSLETLLLTMQMPLSGGLGI 195
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
T+ + + + + + + + D + ++ +KMS+QEIK+E KQ G+P +K R +
Sbjct: 196 LSKTILNLSLKMAIALFAIAIFDYAYQKWEFERSIKMSRQEIKEEFKQLEGDPQLKRRIR 255
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R R +MM +A ++ITNPT A+A+ Y + DAPV++AKG ++A K+R+ A
Sbjct: 256 QRQRELARRRMMAEVKKADVVITNPTRIAVAILYDKKIMDAPVVIAKGLGVVAGKIREEA 315
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IP+ + P LA +L+ V I IP YKAVA+++ +Y K
Sbjct: 316 IKYDIPLVQRPPLAWTLYNNVEIGEKIPEELYKAVAEILVFVYRLK 361
>gi|167464149|ref|ZP_02329238.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 363
Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK E+A +G S E + + LL F + + L
Sbjct: 14 SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 73
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++++ + HL A L+ P ++ ++ + Q + +K
Sbjct: 74 EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 132
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ +L
Sbjct: 133 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 192
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ + I + + LD + ++ L+MSKQEIKDE K+S G+P+IK +
Sbjct: 193 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 252
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA K++++
Sbjct: 253 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 312
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K
Sbjct: 313 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 359
>gi|292493584|ref|YP_003529023.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
gi|291582179|gb|ADE16636.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
Length = 377
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ + +TE P+ K+ ++A +G P SRE S +L+ + LL + +
Sbjct: 1 MAES-SAQERTEQPTPKRQQEAREKGQVPRSRELSTTVLLLSSALGLLLMGEFFLQGLAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ + + + A + + P L L ++ + + L+ +
Sbjct: 60 LMRQGLR-LERAQIFEPAAAILQFQQALWEALKTITPFLFLTLIAALAAPLLMGGWSFSF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++++ +G+KR++ + +K+ K +L+G I + ++
Sbjct: 119 QALGFKWEKLDPLKGMKRVFGPQGWMELLKALAKFLLLGGIACVLFWYLGPDLIALGRQG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
LY + + + + + +D + + +LKM+ QEIK+E K++ G+P
Sbjct: 179 LIPALYQLAHLMGWSFLGLSASLVLIAAIDAPFQHWHHTRQLKMTHQEIKEEHKETEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +MM A +A +++TNPTHYA+AL Y Q + AP +VAKG + +A
Sbjct: 239 ELKARVRRVQREIAGRRMMAAVPQANVVVTNPTHYAVALDYQQDKGGAPRVVAKGADQVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R +A +N+P+ PSL+R+L+ +N IP Y AVAQ++ ++ +
Sbjct: 299 LKIRAVAAANNVPVLSAPSLSRALYYNTELNQEIPAGLYVAVAQVLAYVFQLR 351
>gi|84624133|ref|YP_451505.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|161898983|ref|YP_201256.2| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|6969591|gb|AAF33828.1|AF226282_2 flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae]
gi|84368073|dbj|BAE69231.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 376
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ T+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDGATA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S E+ + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|295399827|ref|ZP_06809808.1| flagellar biosynthetic protein FlhB [Geobacillus
thermoglucosidasius C56-YS93]
gi|294978230|gb|EFG53827.1| flagellar biosynthetic protein FlhB [Geobacillus
thermoglucosidasius C56-YS93]
Length = 360
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + + +L + L F + + +H
Sbjct: 13 GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L I + + L + + +V P L + + +Q + +K ++
Sbjct: 73 QYALMDL-TIGAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+ +G+KRI S+ LV +KS +KI +VG + L +L + + + L
Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357
>gi|188576802|ref|YP_001913731.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576995|ref|YP_001913924.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521254|gb|ACD59199.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521447|gb|ACD59392.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 376
Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ T+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDGATA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S E+ + L L +++P + + + G+ L+ +
Sbjct: 61 WMETAL-SPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|302384124|ref|YP_003819947.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
ATCC 15264]
gi|302194752|gb|ADL02324.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
ATCC 15264]
Length = 362
Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats.
Identities = 105/354 (29%), Positives = 190/354 (53%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ P++KTE S +K+E+A +G+ S + + S+L L+ ++
Sbjct: 1 MAEDADPESKTEEASPQKLEEARKKGDVAKSADVAPALSLLCVTGVLIMGGGYFATNMAQ 60
Query: 61 DLHVLLASATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+A+ + V + + + + +L ++ G+G + Q V++
Sbjct: 61 GFLPFIAAPHAMLGGLEAGGGVEIGARVLWVVAPFLGAVMLAAILGGVGGNVAQSGLVIS 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP + +VS G KRI+ + L+ F ++ +K++ VG I + L + +
Sbjct: 121 AEKMKPKWSKVSPMAGFKRIFGPDGLMQFAQTLLKLVAVGVICWMVLKPHARQFETMAAM 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P +IL A + ++ L+F+A D W ++ +++MSK+E+K+E KQS G+
Sbjct: 181 SPLTILPLARDLMIALMSSALVFLALTAGGDFVWQKMRFAKRMRMSKEELKEEYKQSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK + K I R R +MM+ +AT+I+TNPTHY++ALRY + APV VAKG + +
Sbjct: 241 PHIKAKLKQIRMQRSRQRMMQNVPKATVIVTNPTHYSVALRYEAG-DAAPVCVAKGVDAV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R++A EH++PI E LAR+L+ V I+ IP ++A A++I + K+
Sbjct: 300 AMRIREVAREHDVPIVENVPLARALYAAVDIDETIPREHFEAAARVIGFVMKKR 353
>gi|255321961|ref|ZP_05363111.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
gi|255301065|gb|EET80332.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
Length = 358
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 192/353 (54%), Gaps = 10/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC---LIYLLFFFSPGIYS 57
M+ D KTE P+SKKIEDA +GN P S++ + F ++ ++ LL F ++
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTLAVAIFVVVALLGFIGDQFFT 58
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+ + L+ RKL + + +++P + + G+ + L+Q +
Sbjct: 59 LYNYYQSLIGQEFTRKL-----LFSVAITTIFRTLLIILPIAVCIAIAGVVANLMQFGFI 113
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++P+ +++ +G+K ++S+ L++ +K +K+ V T+ + + +
Sbjct: 114 FTTKPLEPNLNKINPIKGLKNLFSLKKLIDGIKMVLKVTAVFTVGFLMFLSFIKELPHTL 173
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ + L + + ++L+ + + +LD+ Q++ L+MSKQEIKDE KQ
Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQME 233
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+P +K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AKG +
Sbjct: 234 GDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVD 293
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+A ++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y
Sbjct: 294 FLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346
>gi|172057870|ref|YP_001814330.1| flagellar biosynthesis protein FlhB [Exiguobacterium sibiricum
255-15]
gi|171990391|gb|ACB61313.1| flagellar biosynthetic protein FlhB [Exiguobacterium sibiricum
255-15]
Length = 363
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 169/346 (48%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE S +K +D+ +G S + + + + L FF L L+
Sbjct: 15 GEKTEKASPRKRDDSRKKGQVAKSADLTSSLMLFGMFLILFFFGPFLGKRFVMVLENGLS 74
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ T + I ++ + + LV P + ++ GI +Q +L+ ++P
Sbjct: 75 AQTVLVAVEEGRIQEVMIEMLVQMGILVAPFFVTAVVIGILGNFVQIGALLSTESIQPKL 134
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +GIKRI S+ L+ F+KS K++++G L N + S L
Sbjct: 135 DRINPLQGIKRIVSMKALIEFLKSVFKLLVIGATSGTVLWNNKVEISRLTSEPIGDALAI 194
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ I + + + L VLD + + ++MSKQ++KDE K + G+P IK + K
Sbjct: 195 IGHLTFLLGISVSIALIVLAVLDFAYQKFDFEKSIRMSKQDLKDEHKNTEGDPQIKGKIK 254
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+A++Y ++ AP++VAKG + +A ++R+ A
Sbjct: 255 QQQREMAMRRMMQEIPNADVVITNPTHYAVAIQYDDGKHAAPIVVAKGVDAVAFRIREKA 314
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI E LAR+LF + I A+ FY+A+A+ + +Y K
Sbjct: 315 TAAEIPIIENRPLARALFAKSEIGMAVDESFYQALAETLAFVYQMK 360
>gi|167750709|ref|ZP_02422836.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
gi|167656388|gb|EDS00518.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
Length = 353
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 96/351 (27%), Positives = 180/351 (51%), Gaps = 6/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + KTE + KK +D +G S+E ++ ++ +L F + + +
Sbjct: 1 MA----GEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++S + + + + +++ V P L + ++ + ++Q + ++
Sbjct: 57 FMEQSMSSIDKTG-NTVEFAMSVFWKVAIICICTVGPILAVGVVLSVLPVIVQTKGLFSM 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F R++ GIKR++S+ LV +K ++II+V I+ + + I +
Sbjct: 116 EAMKPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTD 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I+ + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P
Sbjct: 176 VIKIVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLI 299
IK + K + + +MM+ A +++ NPTHYA+AL+Y + APV+VAKG + +
Sbjct: 236 QIKGKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDAL 295
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
A ++ +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y
Sbjct: 296 ALRIVAVAQEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346
>gi|312111661|ref|YP_003989977.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
gi|311216762|gb|ADP75366.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
Length = 360
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + + +L + L F + + +H
Sbjct: 13 GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L I + + L + + +V P L + + +Q + +K ++
Sbjct: 73 QYALMDL-TIDAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+ +G+KRI S+ LV +KS +KI +VG + L +L + + + L
Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357
>gi|188579884|ref|YP_001923329.1| flagellar biosynthesis protein FlhB [Methylobacterium populi BJ001]
gi|179343382|gb|ACB78794.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
Length = 354
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 119/350 (34%), Positives = 205/350 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTEA + +++ +A+ +G+ P SREA +F+S L LI L F +
Sbjct: 1 MAEETDHESKTEAATERRVREAIEKGDIPFSREAPVFASTLGLLIALALFARGQASQLAR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L
Sbjct: 61 DFAPLLDDPRGFALETGGDAMLLLSRVALAAGRFLLPILLILAVCSLTASLLQNLPRFVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + RVS G+ RI+ + V F+KS VK + V + + L ++ + +
Sbjct: 121 DRIQPKWSRVSPMAGLSRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + + D+ W+ +W L+MS+Q+IKDE KQ+ G+P
Sbjct: 181 PSQLPELILTVSIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSRQDIKDEHKQTEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA
Sbjct: 241 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVLAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 301 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 350
>gi|260438787|ref|ZP_05792603.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
2876]
gi|292808776|gb|EFF67981.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
2876]
Length = 370
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 99/358 (27%), Positives = 182/358 (50%), Gaps = 6/358 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ +TE ++KK++DA +G SR+ + S+L I L + ++
Sbjct: 10 AKDGPGGQRTEPATAKKLKDARKKGQVAKSRDLTSSVSLLVFFIILKIYVGTMGTKFINE 69
Query: 62 LHVLL-----ASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
V+ +AT +L +S ++ L +++P + ++ L+Q
Sbjct: 70 FKVIYKKMGEVNATSLELNSLSRFFKNYMSDAILDMLVILLPIMAAAVLVAFVGDLVQVK 129
Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
+KP + + GIKRI+S+ LV +KS + + + L + + +
Sbjct: 130 WKPTAEPMKPKADKFNPVNGIKRIFSVKTLVQLLKSIAIVAICMLVTYNKLKKEIGLLYN 189
Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
F + + + + + V I I + + + D + Y ++ + +KMSKQE+KDE K
Sbjct: 190 FYNISLEAAIIRMGDVLLDVGITISVIYLIVGIADFIFEYVKFKNDMKMSKQELKDEWKD 249
Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+ GNP +KN+QK R +MM+A A ++ITNPTH+A+AL+Y Q APV+VAKG
Sbjct: 250 TEGNPEVKNQQKRRMNEASRRRMMQAVPEADVVITNPTHFAVALKYEQNSGKAPVVVAKG 309
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ +A+K+++ A ++ + I E LAR L+ V + S IP Y+AVA+++ ++ K
Sbjct: 310 EDYLAQKIKETARKNQVEIVENKPLARMLYYNVDLGSEIPQELYQAVAEVLAFVWKVK 367
>gi|83749403|ref|ZP_00946397.1| Probable transmembrane flagellar biosynthetic protein (flhB)
[Ralstonia solanacearum UW551]
gi|207738850|ref|YP_002257243.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
IPO1609]
gi|83723930|gb|EAP71114.1| Probable transmembrane flagellar biosynthetic protein (flhB)
[Ralstonia solanacearum UW551]
gi|206592220|emb|CAQ59126.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
IPO1609]
Length = 387
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 172/353 (48%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S++++E A EG+ P SRE F + L + + ++
Sbjct: 1 MSEE-SDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMGESIVRAASA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + + V+ GL+L + + L ++
Sbjct: 60 FLARCLE--FHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLALAALAPLALTRGAISF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ G+KR++S+ L+ + K++LVG + + ++ +
Sbjct: 118 KPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPRQD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G+P
Sbjct: 178 LVTGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A
Sbjct: 238 QLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADMVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y +
Sbjct: 298 AKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350
>gi|89895721|ref|YP_519208.1| hypothetical protein DSY2975 [Desulfitobacterium hafniense Y51]
gi|89335169|dbj|BAE84764.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 354
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 171/353 (48%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ N + KT + ++ ++A +G S E +++ + L F+ + V+
Sbjct: 1 MAGNMS--EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQ 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + L+ L ++V P ++ + G+ +Q + L
Sbjct: 59 IFPYVYGLSAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTL 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R+S+ G KR++ + V +KS +K+ +G + ++ +N+
Sbjct: 116 EPLKPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLT 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ I L + +D + + + LKMS +E+K E KQ+ GNP
Sbjct: 176 VGQGAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K K R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA
Sbjct: 236 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++++A ++ I E LAR+LF Q I A+P YKAVA+++ +Y K
Sbjct: 296 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 348
>gi|258592485|emb|CBE68794.1| Flagellar biosynthetic protein FlhB [NC10 bacterium 'Dutch
sediment']
Length = 359
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 94/350 (26%), Positives = 180/350 (51%), Gaps = 2/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D ++TE+ +SK+ ++A G S++ + +L+ ++ + + +
Sbjct: 3 SDDAKDRTESATSKRRQEARGRGQVARSQDLNAALLMLSGILTFYVLGGSLVADLVGLMR 62
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+L + + + SL + ++ P + ++ S + Q + N + +
Sbjct: 63 FYFGQGLGGEL-TVPRVQQTMFSASLRMATMLAPLMGTLVVVAYVSSVAQVGFLTNSSAL 121
Query: 124 KPSFKRVSLREGIKRIYSI-NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
++R++ G KR+++ L+ +KS +K LVG ++ +L+ + + + P
Sbjct: 122 SLKWERLNPATGFKRLFAPGRTLIETIKSILKFALVGFLVYRTLSGHLSEIPLLMDMTPM 181
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
L ++ + + L TL LD GW Q+ ++M+K+E+K+E+KQ+ G+P +
Sbjct: 182 QTLTWLGQICFQLALRVGLAFLTLAALDYGWQRWQFEKSIRMTKEEVKEEMKQTEGDPAV 241
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K R K + R H+MM +A ++I NP H+A+A+RY T +AP +VAKG L+A++
Sbjct: 242 KGRIKGLQRQAAMHRMMTDVPKADVVIVNPIHFAVAMRYDSTSMEAPTVVAKGARLVAER 301
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A H IPI E+P LAR+L+K V I IP YKAVA+++ +Y
Sbjct: 302 IVAMAKAHGIPIVEDPPLARALYKAVSIGRPIPIHLYKAVAEILAYVYQM 351
>gi|114706765|ref|ZP_01439665.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
gi|114537713|gb|EAU40837.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
Length = 362
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 127/349 (36%), Positives = 200/349 (57%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ KTE P+ KKI D + +GN P SREA + +S LA +++ Y + +
Sbjct: 1 MAESEDRSQKTEQPTEKKIRDTIEKGNLPNSREAPVLASFLAISLFIALQARESGYRLLT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + Q +LE + +L+ LS A+ ++P + + GI + ++Q P +N
Sbjct: 61 TLQTTFDNPLQWELETSRDALHVLSVLSTEAAIFLVPVAIFLCIGGILASVLQNPPQVNF 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +S G+KRI+ L F K+ K +++G ++ + N TM+ + A+
Sbjct: 121 ERIKPKASNISPASGLKRIFGPRGLTEFAKAVFKFLMIGVVVGTLIVSNLGTMIQTMLAD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + K+L + + L DI + W + MSKQEIKDE KQ+ G+P
Sbjct: 181 PVQVPELVLDLAMKLLSGVSIATIVLVAADIAMTRIHWRRDIMMSKQEIKDEHKQTDGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K RQK IAR R R +M+ A AT++I NPTHYA+ALRY + E AP++VAKG +L+A
Sbjct: 241 MVKQRQKQIARERSRKRMIAAVPNATLVIANPTHYAIALRYKREEGGAPMVVAKGTDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R++A E IP+ E+ LARS++ V I+ IPP F+KAVA++IY +
Sbjct: 301 LKIREVAEEKEIPVIEDKLLARSMYDHVHIDQMIPPEFFKAVAEIIYYL 349
>gi|158320532|ref|YP_001513039.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
OhILAs]
gi|158140731|gb|ABW19043.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
OhILAs]
Length = 362
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 104/347 (29%), Positives = 182/347 (52%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE + KKI+DA +GN S+E + +LA I + F + S+ + +
Sbjct: 11 SEEKTEQATPKKIKDAREKGNVLQSKEVNSALILLAIFIIINAFATFIGVSLLNMTRAVY 70
Query: 67 ASATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + ++ L L + V P L ++ G+ S Q +L +
Sbjct: 71 TEFLSANIAFSVKNLQILSIKLMIYFFIAVGPIALTSLVVGLISSYAQVGVLLTSKPLMF 130
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+++ EG K+++S+ ++V +K+F+++ ++G I + +L+ + SIL
Sbjct: 131 DLNKINPIEGFKKMFSMRSVVELLKAFIRLGVIGYISYDYVKGQVGVILETTGMDISSIL 190
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ I + + L VLD + +++ LKMSKQEIK+E KQ+ GNP IK++
Sbjct: 191 KAIMSMTVDIGIKAGIALIALAVLDYYYQRYEYNKNLKMSKQEIKEEYKQTEGNPQIKSK 250
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R +MM+ A +IITNPTH+A+ ++Y E DAP ++AKGQ+LIA+ ++K
Sbjct: 251 IKEKQRQMAMRRMMQDVPSADVIITNPTHFAIGIKYDLNEFDAPKVIAKGQDLIAQNIKK 310
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
IA E+N+ + E LAR+L+ V + +PP Y+AVA+++ +Y
Sbjct: 311 IALENNVTVVENKPLARALYDSVEVGQFVPPDLYQAVAEVLAYVYRI 357
>gi|57237386|ref|YP_178399.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni RM1221]
gi|86149065|ref|ZP_01067297.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88597389|ref|ZP_01100624.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 84-25]
gi|205356015|ref|ZP_03222783.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561994|ref|YP_002343773.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|57166190|gb|AAW34969.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni RM1221]
gi|85840423|gb|EAQ57680.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190450|gb|EAQ94424.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359700|emb|CAL34486.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|205346139|gb|EDZ32774.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315928679|gb|EFV07962.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 305]
Length = 362
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 185/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY + AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTGKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|39995534|ref|NP_951485.1| flagellar biosynthesis protein FlhB [Geobacter sulfurreducens PCA]
gi|39982297|gb|AAR33758.1| flagellar biosynthetic protein FlhB [Geobacter sulfurreducens PCA]
gi|298504535|gb|ADI83258.1| flagellar biogenesis protein FlhB [Geobacter sulfurreducens KN400]
Length = 352
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 95/350 (27%), Positives = 188/350 (53%), Gaps = 2/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D +KTE P++KK+++A +G P SR+ + +++A ++ L ++
Sbjct: 2 SDDKHSKTEKPTAKKLDEAKKKG-VPHSRDLTSTVTLIAAMVALYTTGGFMFTTLKRTSG 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
LL S L + S + LL L L +V+P +L+ ++ G+ + ++Q +N +
Sbjct: 61 ELLGSMGTFHLTEAS-VEHLLIKLFLVFLSVVMPFMLVVVISGLATTMVQVGFSMNSERI 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+++ +++++ ++LV +K+ +KI++VG + + + +L +
Sbjct: 120 TFKLDKLNPVTNAQKLFNKDSLVEMLKAVLKIVIVGYMSYKIMRDEMDGLLFLADTDLAG 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL K++I + L VLD+ + ++ LKM+KQE+KDE K+S G+P +K
Sbjct: 180 ILEVFKHLAFKLVIHTCGVLLILGVLDLAFVKWRFIDNLKMTKQEVKDEHKESEGDPKVK 239
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ + + + + ++ + A +++TNPTHYA+AL+Y + AP+++AKG + +A+ +
Sbjct: 240 GKIRQMQFQQAQKRLRKVIPTADVVVTNPTHYAVALKYERETMAAPLVLAKGVDHMAQTI 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ IA E+N+ + E LAR L+ QV IP Y AVA+++ +Y K
Sbjct: 300 KAIARENNVMLVENRFLARELYAQVKEGQPIPESLYTAVAEVLAYVYSLK 349
>gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium butyricum 5521]
gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium butyricum 5521]
gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 612
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 181/348 (52%), Gaps = 2/348 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + KK D+ +G S++ S+ +++ C I + ++ I + L
Sbjct: 265 SDDKTEEATPKKKSDSRKKGQIARSKDVSVALTMVVCTIAVSACWNMMINGFKEVMIYFL 324
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + +L + + + ++P L M+ GI + L+Q ++ +KPS
Sbjct: 325 -QLPMLDNFDKLSLTGILITVIMRVAYGLLPIALPIMVGGIIASLMQTGFLITGEPLKPS 383
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+++ GIK + S ++V+ K+ V I +V I ++ NY ++ + S+
Sbjct: 384 FKKLNPLSGIKNMISKRSIVDLCKNLVVISIVSIISYRYISSNYQKIISMSNIYIPSLNV 443
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V + I + + + +D + LKM+KQE+KDE KQ G+P +K +
Sbjct: 444 EIKTLVLDIFKQICIALIVIAAIDYFVQFKMHNKDLKMTKQEVKDEYKQQEGDPQLKGKI 503
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305
K R R +MM++ S AT++ITNPTH A+AL+Y + +AP ++AKG + +A K++
Sbjct: 504 KQKQREMSRQRMMQSVSDATVVITNPTHLAIALKYEEGTDMEAPKVLAKGTDYLALKIKS 563
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA E+ IPI E LAR ++ +V I++ IPP Y+ VA+++ + K
Sbjct: 564 IAKENEIPIIENKPLARMMYDKVEIDNDIPPELYQGVAEILAIVMKIK 611
>gi|288553046|ref|YP_003424981.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
gi|288544206|gb|ADC48089.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
Length = 363
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 177/346 (51%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
D KTE + KK +D+ +G S + + +L ++L FF I S DL +
Sbjct: 13 DEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLLVFLFLWFFGGAIIGSTLMDLMKHVF 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + + A+ +++P +L+ M+ G+ + IQ P+ + +K
Sbjct: 73 QTYLLMDVTPRSFEAMFKEIVMEAAVVLLPIMLVAMVAGVAASYIQVGPLFTTDPLKMKL 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ +G KRI+S+ +V +KS +KI G ++ + L N +L Y
Sbjct: 133 SKIDPIKGFKRIFSVRAIVELLKSLLKIAFAGVVVFVILWFNLEDVLLLSQKAVADGFYV 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + + L++ D + + ++KMSK++IKDE K G+P IK+++K
Sbjct: 193 IAQLTALMGVAVAVLLLFLSIPDYLYQKYDHEKQIKMSKKDIKDEHKNMEGDPRIKSKRK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+MM+ A ++ITNPTHYA+AL+Y + + DAP++VAKG + +A+K++ IA
Sbjct: 253 QKQMEMAMQRMMQEVPNADVVITNPTHYAIALKYDEEKADAPIIVAKGVDYVAQKIKGIA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++ + E LAR+L+ I +P +KAVA+++ +Y K
Sbjct: 313 SEHDVVLVENKPLARALYANADIGEQVPEDMFKAVAEVLAYVYRLK 358
>gi|78224286|ref|YP_386033.1| flagellar biosynthesis protein FlhB [Geobacter metallireducens
GS-15]
gi|78195541|gb|ABB33308.1| Flagellar biosynthetic protein FlhB [Geobacter metallireducens
GS-15]
Length = 353
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 186/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D +KTE P+ K++++A +G P SR+ + +++A ++ L ++ S
Sbjct: 1 MSEED-KHSKTEQPTPKRLDEAKKKG-VPHSRDLTSTVTLIASMVALYTTGGFMFTTLKS 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S +L + S + LL L L ++V P +L+ ++ G+ + + Q +N
Sbjct: 59 TTSEIFGSMGTFQLTE-SSVEMLLVKLFLVMLQVVGPFMLVVVIVGLFTTVAQVGFSMNA 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++++ E ++++ ++ + K+ +KI++VG + + + ++ +
Sbjct: 118 ERIAFKPEKLNPAENFGKLFNKDSFMEMAKATLKILIVGYMSYKIMRDELDGIIYLTDTD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
IL K++I + L ++D+ + ++ + KM+KQE+KDE K+S G+P
Sbjct: 178 LSGILELFKHLCFKLVIHTCGVLLILGIVDLVFVKWRFIERQKMTKQEVKDEHKESEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + + ++ A ++ITNPTH+A+AL+Y + AP ++AKG + +A
Sbjct: 238 KVKGKIRQMQFQQAQRRLRAVIPTADVVITNPTHFAVALKYDRLTMAAPTVLAKGADHMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ +A E+N+ + E LAR L+ QV IP Y AVA+++ +Y K
Sbjct: 298 QTIKAMARENNVMLVENRFLARELYAQVKEGEEIPEALYAAVAEVLAYVYSLK 350
>gi|78047537|ref|YP_363712.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925983|ref|ZP_08187349.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
gi|78035967|emb|CAJ23658.1| flagellar biosynthesis pathway component FlhB [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325543579|gb|EGD14996.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
Length = 376
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMVLARGIGDGAAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + E + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPKLRETPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + +++ + ++
Sbjct: 120 KAIMPDLSKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISKGLHGLRSLVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|115523575|ref|YP_780486.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
BisA53]
gi|115517522|gb|ABJ05506.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
BisA53]
Length = 356
Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D+ KTE P+ K+++DA G+ S+E + + I + L F + +
Sbjct: 1 MSDDDSS-EKTEDPTQKRLDDAHQRGDVAKSQEVNTWFVIAGGTLVLSSFSGSIGAGLQN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL ++ + + + T + + + L +P L+L M+ + ++Q V +
Sbjct: 60 PLRNLLENSWMIRTDGPGLLALAQTLIYVVIAALGVPLLML-MIAAVAGNVLQHRLVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F ++S +G KR++ F+K KII +G ++ L + + +
Sbjct: 119 EGLKPKFSKLSPMQGAKRLFGKQAWATFLKGLFKIIALGAVMVAVLWPERHRLEAMVRFD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+++ ++L ++ +A + V D + Y WY K KMS QEIK+E KQS G+P
Sbjct: 179 VAALMGTTITLTLQLLGAVVAMLAAVAVADFFFQYRTWYEKQKMSLQEIKEEHKQSEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R+R +MM A +A+++ITNPTHY++AL Y APV VAKG + +A
Sbjct: 239 HIKGKLRQLRMQRMRQRMMAAVPKASVVITNPTHYSVALSYESG-MQAPVCVAKGADAVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A +++PI E LAR+L+ V I+ +P Y AVA++I + K
Sbjct: 298 LKIREVAKANDVPIVENVPLARALYATVKIDEEVPVEHYHAVAEVIGYVMRLK 350
>gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
743B]
gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
cellulovorans 743B]
gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
743B]
Length = 607
Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 2/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
D K+E +SKK+ DA +G S++ L + LA L + I +++ + +
Sbjct: 262 DEKSEEATSKKLADAKKKGQIARSKDLGLGITFLATAFGLAALGNMFIDRMSNIIMKFFS 321
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
ED ++ +L + + L++P + M+ G+ + L Q + +KP
Sbjct: 322 VTNGNLTED--GLIEILKIAMIDGAILILPIAFIVMVTGVAASLAQTGFMNTSEPLKPDL 379
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+++ +G KRI+S+ ++V+ +K+ II+VG + ++++ ++ I+ +ILY
Sbjct: 380 KKINPVDGFKRIFSMRSVVDLLKNVTIIIIVGYVGYKLVSDDIVDIMLLINLKEGAILYE 439
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V +L+ I L ++ + + D + ++ +++M+KQE+K+E KQ G+P IK ++K
Sbjct: 440 LKKIVTSILLKIALILSVIGIADYMYQKKKFLKEMRMTKQEVKEEYKQMEGDPEIKAKRK 499
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ R +MM A AT+++TNPTH+A+AL+Y + AP++VAKG + IA K+++IA
Sbjct: 500 QKMKELSRARMMAAVPNATVVVTNPTHFAVALKYEEGSAGAPMVVAKGTDNIAFKIKEIA 559
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+ +PI E LAR ++K+V I+ IP Y+AVA+++ + K
Sbjct: 560 KENKVPIIENKPLARLIYKEVDIDEEIPIDMYQAVAEILAMVLKMK 605
>gi|163850079|ref|YP_001638122.1| flagellar biosynthesis protein FlhB [Methylobacterium extorquens
PA1]
gi|163661684|gb|ABY29051.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
PA1]
Length = 353
Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 120/350 (34%), Positives = 203/350 (58%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F +
Sbjct: 1 MAD-DDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L
Sbjct: 60 DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P + RVS G RI+ + V F+KS VK + V + + L ++ + +
Sbjct: 120 DRITPKWSRVSPMAGFTRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349
>gi|302037621|ref|YP_003797943.1| flagellar biosynthetic protein FlhB [Candidatus Nitrospira
defluvii]
gi|300605685|emb|CBK42018.1| Flagellar biosynthetic protein FlhB, export component [Candidatus
Nitrospira defluvii]
Length = 360
Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 96/356 (26%), Positives = 185/356 (51%), Gaps = 5/356 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ N+TE + K+ DA +G +SR+A++ +L L L + + +
Sbjct: 1 MA--DSGQNRTEQATPKRKADARAKGQVALSRDAAMAVGLLGSLGALYWMTPGILNGLRE 58
Query: 61 DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
L + L+ + + + + H+ +L + + ++ P + + G+G+ LIQ +
Sbjct: 59 SLQLWLSKSMEESTQRTLSLDHLHLILRQVGVDVFVMLGPVIAGIAVVGVGANLIQTGFL 118
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
+ ++ F R+S G R++S+ + +KS++KI +G + +++ ++
Sbjct: 119 WKRDALQLEFSRISPMAGFSRLFSVRSFSELVKSWLKIFAIGGVGYLTIKQDMVLFSPLT 178
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
++L + K +M+ + LD G+ +W L+MS+ EIK+E + +
Sbjct: 179 QFGMETLLPTVGWATFKAALMMGGAALVIGGLDYGFQRFEWERDLRMSRDEIKEESRAAE 238
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+P +K + +S R R +MM A +A +IITNPTH A+AL+Y AP++VAKG
Sbjct: 239 GDPGLKAKIRSTQREMSRKRMMAAVPKADVIITNPTHLAVALKYDSKAMGAPIVVAKGAG 298
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A+K+R+I +H + I E +AR+LFK V + +P Y+AVA+++ +Y +
Sbjct: 299 YVAEKIREIGRQHGVMIVENKLVARTLFKLVEVGREVPEDLYRAVAEILAFVYRVR 354
>gi|284925607|gb|ADC27959.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
jejuni IA3902]
Length = 362
Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMLSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|289666118|ref|ZP_06487699.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 376
Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ T
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDRATV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPTMRANPIALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + ++++ + +S
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|289670566|ref|ZP_06491641.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 376
Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+ T
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDRATV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPTMRANPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + ++++ + +S
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|148926430|ref|ZP_01810113.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145844593|gb|EDK21699.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 362
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIIPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVTQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|322421718|ref|YP_004200941.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
gi|320128105|gb|ADW15665.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
Length = 352
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 185/350 (52%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D +KTE P+SKKI DA ++GN SRE + +++ +I L + ++ +
Sbjct: 2 SDDKHSKTEKPTSKKISDAKSKGNVARSREMTSAVTLITAMIALYASSGIMLKTLQGTMK 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ ++ + L+ + ++ P LL+ ++ G+ + Q L+ +
Sbjct: 62 DIFGGLASIEI-TPGGVHHLMIKEFANLGIMLTPFLLVGIISGLAVEISQGGINLSSEKL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K R++ +G+ R+++ +++ +KSF+K+ +VG + L E ++ + +
Sbjct: 121 KFDLGRLNPVQGMGRLFNKDSVFQVVKSFIKMGIVGYMAYKILAEEMEGIIFLVDQDLLG 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL K+++ + L VLD+ + ++ LKM+KQE+KDE K + G+P IK
Sbjct: 181 ILQFIGHISFKIVLHTCGVLIILAVLDLAFVKWRFLDNLKMTKQEVKDEHKNTEGDPAIK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+Q+ A R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A ++
Sbjct: 241 GKQRQKAFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMALQI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A E+N+ + E LAR L+ QV S IP + AVA+++ +Y K
Sbjct: 301 KIVARENNVTLVENRFLARELYAQVEEGSEIPEGLFAAVAEILAYVYSLK 350
>gi|86153620|ref|ZP_01071823.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|157414632|ref|YP_001481888.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
jejuni 81116]
gi|4105266|gb|AAD02331.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni]
gi|85842581|gb|EAQ59793.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|157385596|gb|ABV51911.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
81116]
gi|307747272|gb|ADN90542.1| Flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
M1]
gi|315931587|gb|EFV10553.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 327]
Length = 362
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|294664739|ref|ZP_06730068.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605493|gb|EFF48815.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 376
Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMVLARGIGDGAAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + E+ + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + ++ + ++
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
beijerinckii NCIMB 8052]
gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB
8052]
Length = 613
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 176/348 (50%), Gaps = 2/348 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + KK ++ N+G S++ S+ +++ C + + + L
Sbjct: 265 GDDKTEEATPKKKSESRNKGQIARSKDVSVAITMVICTLLISSLWGMLTNGFKEVLIYFF 324
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ I L + ++P L M+ G+ + L+Q ++ +KPS
Sbjct: 325 NFPMIGDFNHAT-ISNLAITTVIKIGSYLLPFALPIMVGGVIASLLQTGFIITAEPLKPS 383
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G+K + S ++V+ K+ V I +V I ++ NY ++L + S+
Sbjct: 384 FGKLNPLSGLKNMISKRSIVDLSKNLVVITIVSIICYKYISGNYQSILGISNLYLPSLSD 443
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V + I + + + +D +++M+KQE+KDE KQS G+P IK +
Sbjct: 444 EVKNLVVGIFKQICIVLVIIAGIDYFLQVRMHNKEMRMTKQEVKDEYKQSEGDPKIKGKI 503
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305
K R +MM++ + AT++ITNPTH A+A++Y + + +AP +VAKG + +A K++
Sbjct: 504 KQRQRELGMKRMMQSVADATVVITNPTHLAIAIKYEEGKDMEAPKVVAKGADYVAFKIKS 563
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA E+ +P+ E LAR ++ +V ++ IP Y+AVA+++ + K
Sbjct: 564 IAKENEVPVIENKPLARLMYDRVEVDQDIPQDLYQAVAEILVVVMKLK 611
>gi|21242681|ref|NP_642263.1| flagellar biosynthesis protein FlhB [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108153|gb|AAM36799.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 376
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ +TE P+ K++ +A +GN P SRE S + A + L+
Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMVLARGIGDGAAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L S + E+ + L L +++P + + + G+ L+ +
Sbjct: 61 WMKTAL-SPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ GIKR++ N+L +KS ++++ VG + ++ + ++
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L + L +D + W KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352
>gi|121613536|ref|YP_001000045.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
jejuni 81-176]
gi|87250257|gb|EAQ73215.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 368
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|219670145|ref|YP_002460580.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
DCB-2]
gi|219540405|gb|ACL22144.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
DCB-2]
Length = 350
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KT + ++ ++A +G S E +++ + L F+ + V+ +
Sbjct: 3 EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVYGL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + L+ L ++V P ++ + G+ +Q + L +KP
Sbjct: 63 SAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPLKPQLS 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+S+ G KR++ + V +KS +K+ +G + ++ +N+
Sbjct: 120 RISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQGAMFI 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ I L + +D + + + LKMS +E+K E KQ+ GNP +K K
Sbjct: 180 GGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNPQLKGEIKR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA++++++A
Sbjct: 240 KQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIAQRIKQLAK 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ I E LAR+LF Q I A+P YKAVA+++ +Y K
Sbjct: 300 DYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 344
>gi|323490157|ref|ZP_08095377.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
gi|323396205|gb|EGA89031.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
Length = 362
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K +++ +G S E + I+ ++ L + + + +
Sbjct: 14 GEKTEKATPQKRQESKRKGQVAKSPEVAAAMIIIGGIVLLNSMGGWMMDRILAIYRIHFT 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
++ + I L ++++A L++P +L+ M+FG IQ + + + F
Sbjct: 74 QYISWEI-TPATIRTLFEQMAMNAFLLMLPIMLVGMIFGFLGNFIQVGAIFTADPIMAKF 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R+ +G KRI+++ LV KS +KI ++G L + +
Sbjct: 133 ERLDPIKGAKRIFALRALVELGKSLLKIAIIGGAAFGVLWVGKDELFTLSQKSIGYSFSF 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V ++ ++ L + +L+VLD + +++ +KMSKQ+IKDE K++ G+P+IK++ K
Sbjct: 193 IGSLVFQMGLIAGLILLSLSVLDYIYQKYEFEKGIKMSKQDIKDEYKKAEGDPLIKSKIK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R ++M++ A ++ITNPTHYA+A++Y +APV++A G++ +A K+++ A
Sbjct: 253 DKQRQMSMNRMIQDLPSADVLITNPTHYAIAIKYDAETMEAPVIIAMGKDYLALKIKEKA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E I E LAR+L+ QV + +P + AVA+++ IY K
Sbjct: 313 KEFGIVTMENKPLARALYAQVEVGDVVPEELFLAVAEVLAYIYRLK 358
>gi|315498431|ref|YP_004087235.1| flagellar biosynthetic protein flhb [Asticcacaulis excentricus CB
48]
gi|315416443|gb|ADU13084.1| flagellar biosynthetic protein FlhB [Asticcacaulis excentricus CB
48]
Length = 355
Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 188/354 (53%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D ++KTE S++K+E+A +G+ S + S++A ++ + S+T
Sbjct: 1 MA--DEGEDKTEEASARKLEEARKKGDVAKSADVPQALSLIAACALVMLYGDKIALSLTE 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L V +A+ + + + H L ++ LL+ G L Q + +
Sbjct: 59 TLRVFVAAPHLLRDSLMGDGGLTIAHHLMGQVLPIIALILLVAGAAGAIGSLAQTGLMFS 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP F +++ G KR++ ++ L+ F K+ +K+I VG I + L + A
Sbjct: 119 TEKLKPDFSKLNPMAGFKRLFGVDALIQFAKTVIKLIAVGVITWMILKGRAGDVAGLAGA 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P +L +A + + + LF+ D ++ ++KM+K E+KDE KQ+ G+
Sbjct: 179 SPLMVLPYAKEVFFSLAVAVCLFMLLEGGADYFIQKLRFSQRMKMTKTEVKDEYKQTEGD 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R K I + R +MM +AT++ITNPTHYA+ALRY E AP+ VAKG + +
Sbjct: 239 PHVKGRLKQIRMEKSRQRMMANVPKATVVITNPTHYAVALRYD-EETPAPLCVAKGVDTL 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R++A +H+I I E+P LAR+L+ + ++ IP ++AVA++I + +K
Sbjct: 298 ALKIREVAGDHDIAIVEDPPLARALYAAIDVDEIIPETHFQAVAKIISFVMVRK 351
>gi|146296299|ref|YP_001180070.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409875|gb|ABP66879.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 366
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + +K ++A G SRE + ++L +++L F +S ++ + S +
Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLFVHPLQSYGKYFFGNL 75
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+EDI+ L + + +LV+P ++ M Q ++ +K SF++
Sbjct: 76 -NYNIEDIADASRLFSAIITITLKLVLPFCIVIMFMTALVEWAQSGFLITSESLKVSFQK 134
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ EG KRI+SIN++V +KS +KI+++G +S +L+ + SI+ +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKILIIGYTGYLSTKTFAGKLLEMYDMSLISIVKFSF 194
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK+R +
Sbjct: 195 DSTINLILWMSIMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKEEAKK 314
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ I I E LA+SL+ + IPP Y AVA+++ +Y K
Sbjct: 315 YKIEIVENKELAQSLYNMCEVGDFIPPELYHAVAEVLAYVYSLK 358
>gi|89098625|ref|ZP_01171507.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
gi|89086587|gb|EAR65706.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
Length = 360
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +D+ +G S++ + +LA ++LLF + L
Sbjct: 12 SGEKTEKATPKKRQDSRKKGQVAKSQDVNTALVLLAVFLFLLFAGGYLKNIIMYLLTHSF 71
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+L + S++ + + + + P +L+ M+ G + +Q + + ++
Sbjct: 72 QEFMLMELTE-SNVQAIFLAVMKELALFLGPVMLIAMIAGAAANYMQVGFLFSTEAIQFK 130
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ +G KRI+S+ +V +KS +KI VG + + L +L +P + L
Sbjct: 131 LEKIDPIKGFKRIFSMRAIVELLKSVLKIGFVGAVTFVVLWMRIDEILMLSQKSPGAALI 190
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ + + L+VLD + + + ++MSKQ+IKDE K G+P+IK++
Sbjct: 191 ILASLTVQMGLFASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 250
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ A ++ITNPTH+A+AL+Y + + DAP +VAKG + +A+K++ I
Sbjct: 251 KQKQREMAMSRMMQEVPNADVVITNPTHFAIALKYDEEKQDAPYVVAKGADYVAQKIKYI 310
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+ + E LAR+L+ Q I S IP F+K VA+++ +Y K
Sbjct: 311 AKENEVITVENRPLARALYSQTEIGSTIPEEFFKTVAEILAYVYRTK 357
>gi|288962718|ref|YP_003453012.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288914984|dbj|BAI76468.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 359
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 111/354 (31%), Positives = 192/354 (54%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K++ +A +G+ P +R+ L S+++A + +L ++++
Sbjct: 1 MAEQDDEQ-KTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMAAPGVASNLSA 59
Query: 61 DLHVLLASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L+ + +++ + ++ L L + ++P L + ++ + S L Q V+
Sbjct: 60 LLLPLIENPDDIRIDGGAIDVIHSLAWLIGGVAVALLPVLGILLVGAVVSALGQGPFVVA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + +S G KR+ LV F KS VK+ ++ +L D +
Sbjct: 120 SDRIRPKWSHLSPAAGWKRMAGRPALVEFAKSLVKLAIISAAAWRALAPYIAWTEDTVGM 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + ++L+ +LL + +D+ W+ +W +L+MS QEIKDE KQ G+
Sbjct: 180 DVAGLPNLLRDVTLRLLLAVLLATVLMAAVDVLWNRLEWRRRLRMSPQEIKDEFKQIEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P K R + I RSR + +MM RAT++ITNPTH+A+AL Y + AP+ +AKG +LI
Sbjct: 240 PNAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAAPICLAKGADLI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R +A EH IPI E P LAR+L Q +++AIP Y+AVA++I + K
Sbjct: 300 ALRIRALAQEHGIPIVENPPLARALHAQAEVDAAIPLQHYQAVAEVITYVLKLK 353
>gi|153952141|ref|YP_001398614.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939587|gb|ABS44328.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
doylei 269.97]
Length = 362
Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIIIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLAWLRDRSIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVADADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|319649548|ref|ZP_08003704.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
gi|317398710|gb|EFV79392.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
Length = 361
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 181/347 (52%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +D+ +G S++ + +LA ++LLF S +
Sbjct: 13 SGEKTEKATPKKRQDSRKKGQVAKSQDVNTAIVLLAVFLFLLFAGSYLKNIILYIFTHSF 72
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
L + ++I + + + P +L+ M+ GI + +Q + + ++P
Sbjct: 73 NDYMLMPLTE-ANIQVIFLDVLKELVLFLGPIMLVAMLAGITANFMQVGTLFSTEAIQPK 131
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ +G KRI+S+ +V +KS +KI VG L +L + + +
Sbjct: 132 LEKMDPIKGFKRIFSMRAIVELLKSMLKIAFVGVAAFAVLWLRIDEILILSQKSVGTAMA 191
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ ++ + L+VLD + + + ++MSKQ+IKDE K G+P+IK++
Sbjct: 192 TLASLTVQMGLIASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 251
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +A ++ITNPTH+A+AL Y +T++DAP++VAKG + +A+K++ I
Sbjct: 252 KQRQREMAMRRMMQEVPKADVVITNPTHFAIALSYDETKSDAPIVVAKGVDFVAQKIKLI 311
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH++ E LAR+L+ Q I AIP F+KAVA+++ +Y K
Sbjct: 312 AKEHDVIAVENRPLARALYSQAEIGQAIPEEFFKAVAEILAYVYRTK 358
>gi|218528682|ref|YP_002419498.1| flagellar biosynthesis protein FlhB [Methylobacterium
chloromethanicum CM4]
gi|240137212|ref|YP_002961681.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
AM1]
gi|218520985|gb|ACK81570.1| flagellar biosynthetic protein FlhB [Methylobacterium
chloromethanicum CM4]
gi|240007178|gb|ACS38404.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
AM1]
Length = 353
Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats.
Identities = 120/350 (34%), Positives = 203/350 (58%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F +
Sbjct: 1 MAD-DDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L
Sbjct: 60 DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P + RVS G RI+ + V F+KS VK + V + + L ++ + +
Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349
>gi|86151337|ref|ZP_01069552.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315123900|ref|YP_004065904.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841684|gb|EAQ58931.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315017622|gb|ADT65715.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 362
Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 185/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ ++ + LF S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTITLFMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|254559224|ref|YP_003066319.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
DM4]
gi|254266502|emb|CAX22266.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
DM4]
Length = 353
Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats.
Identities = 120/350 (34%), Positives = 203/350 (58%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F +
Sbjct: 1 MAD-DDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L
Sbjct: 60 DFAPLLDDPRGFSLESSGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P + RVS G RI+ + V F+KS VK + V + + L ++ + +
Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349
>gi|56475796|ref|YP_157385.1| flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
gi|56311839|emb|CAI06484.1| Flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
Length = 388
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 90/323 (27%), Positives = 163/323 (50%), Gaps = 2/323 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE S +++E A EG P SRE S F ++ L +
Sbjct: 1 MAE-DSDLEKTEQASPRRLEQAREEGQVPQSRELSTFLVLITGASGLWLMGGWIGERMLG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + D ++ L A ++P + M+ +G+ ++ V +
Sbjct: 60 MLRHGFR-FERALAFDPQLMLQDFGDLFTQALLTMLPLFGVLMVAAVGAPILLGGFVFSP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R+ +GI R++ ++ LV +KS +K +VG I ++ + S
Sbjct: 119 KALGLELDRMDPLKGIGRMFLLHGLVEMLKSLLKAAVVGGIGVFAMWRERDHIFALTSEA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V ++I++ +A L ++D+ + Q++ +L+M+K+E+K E K+ G+P
Sbjct: 179 VERAVPDFLQAVLFSALLIIMGLALLALIDVPFQLWQYHKRLRMTKEEVKREGKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S+ R R +MM +A +++TNPTH+++AL+Y + APV+VAKG+ IA
Sbjct: 239 HVKGRIRSMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAQKMGAPVVVAKGRGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARS 323
K+R++A EH +P+ E P LAR+
Sbjct: 299 LKIRELAKEHKVPLLEAPPLARA 321
>gi|209884540|ref|YP_002288397.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
OM5]
gi|209872736|gb|ACI92532.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
OM5]
Length = 355
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 191/353 (54%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+KT+ P++K++E+A G+ S E + + + + F S+T
Sbjct: 1 MAE--DSDDKTQDPTAKRLEEAHKRGDVAKSIEVNTWFMVAGATFVMSSFSDSVASSITV 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL A + ++ D + ++ L L + + LL ++ I S+L+Q PV +
Sbjct: 59 PLKNLLQHAGEMRV-DGASLLQLAARLEIMLLVALGLPFLLLVIAAIASHLVQHRPVWST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P + ++S G KR++ NF K K+I +G ++ + + + + +
Sbjct: 118 DPITPKWSKLSPLAGAKRLFGKQAAANFAKGLFKVITIGVVMAVVMWPEHERADAMVRLD 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G+P
Sbjct: 178 PSLMLDLTRSMALKLMGTVVAMLALVAALDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R +++ +R+R +MM A A+++ITNPTHYA+ALRY + AP+ VAKG +LIA
Sbjct: 238 QIKGRIRALRMARVRKRMMAAVPTASVVITNPTHYAVALRYERG-MPAPICVAKGVDLIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A H++PI E LAR+L V I+ IP Y AVA++I + K
Sbjct: 297 FKIREVATAHDVPIVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMRLK 349
>gi|34558296|ref|NP_908111.1| flagellar biosynthesis protein FlhB [Wolinella succinogenes DSM
1740]
gi|34484015|emb|CAE11011.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLHB [Wolinella succinogenes]
Length = 352
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 173/352 (49%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTE PS KKIE A +GN P S E +F +L LI + F+ +
Sbjct: 1 MADE---EEKTEEPSGKKIEKAREDGNVPKSPEVVVFFGLLVGLILIYVLFTYWVDGTGR 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
H + + + L ++L LVIP + M+ G+ + Q +L+
Sbjct: 58 VFHQVTPYFHEEI--GRKDAISLAISIALEYFLLVIPLFIALMIIGVAGNVSQFGFLLSS 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ VK++ I +
Sbjct: 116 KAIEPKFSKLNPITGLKNLFSLKKLLDGTLLTVKVLTAFGIGFWVFLSFIGELTTVSLFP 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++LLF + +D +Q++ L+M+KQE+KDE KQ GNP
Sbjct: 176 LFDQMRWFKDKALILAAILLLFFFVMASIDFAIKRYQYFKSLRMTKQEVKDEYKQMEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +MM+ A ++ITNPTHYA+ALRY + AP ++AKG + +A
Sbjct: 236 EIKRKIRQLMMQAAMKRMMQQLPTADVVITNPTHYAVALRYNTQKERAPRVIAKGVDFMA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++IA EH I I E +LAR L+K ++ IP ++AVA+++ +Y
Sbjct: 296 IRIKEIAREHEIQIVENKTLARELYKNADVDKEIPETLFQAVAEVLAYVYKL 347
>gi|220903612|ref|YP_002478924.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867911|gb|ACL48246.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 359
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 100/354 (28%), Positives = 182/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M +KTE + K+I EGN P S+E S+L + L + P ++
Sbjct: 1 MFGKQKDPSKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGMSILYAWIGPMSEAIKK 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+ A + + ++ L L + ++++P LL + + + +Q +
Sbjct: 61 LFRHFLSHAWEFD-PNPENVYSLTLELMIEVCKIIMPILLTLAVLSMLAQRLQVGKLWTT 119
Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
KP +R ++ +GIK++ +S ++ +KS + +++ TI + + Y L A
Sbjct: 120 KVFKPKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILSTIPAWIIYKEYQNFLPMYYA 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + K++ L+ I + D+ S + + +KM+K E+KDE KQ+ G+
Sbjct: 180 TTEGVAVYMLQMAFKLVSYALIPILIIAAFDVWQSRYSYKENMKMTKDEVKDEHKQADGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K++Q+ + +M++ +A ++ITNPTH A+ALRY TE APV++AKG + +
Sbjct: 240 PVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIAVALRYNATEAPAPVVLAKGADHL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+K+++ A EHN+PI E LAR+L+K + IP YKAVA ++ I+ K
Sbjct: 300 AEKIKQAAREHNVPIRENVPLARALYKSAEVGDMIPEELYKAVATVLAAIWKLK 353
>gi|283955188|ref|ZP_06372690.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793401|gb|EFC32168.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
414]
Length = 362
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 183/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ ++ + L + +
Sbjct: 1 MASED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTVTLLMMGFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMVAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ LV +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVMVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|283955760|ref|ZP_06373251.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792715|gb|EFC31493.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 362
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 185/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + L S + +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLLMMSFMGERIVN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ G+ ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + +
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVY 346
>gi|315179661|gb|ADT86575.1| flagellar biosynthetic protein FlhB [Vibrio furnissii NCTC 11218]
Length = 376
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +KTE S +K++ A +G P ++E + LA +Y S+
Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAVYFYAQLPAIWQSIAG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L S T+ L++ ++ L H L++P L+ ++ + S +I +
Sbjct: 61 VFRYNL-SLTRADLDNPMQMIEQLGHSLGMVIELLLPMFLVIIVVTLASSMILGGWLFRP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML
Sbjct: 120 ANLLPKLSKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+++ + V+DI + + +LKM+KQE+K+E K + G P
Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAKG + A
Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++A ++ + I P L RS++ I A+P Y AVA ++ + K
Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352
>gi|189426336|ref|YP_001953513.1| flagellar biosynthesis protein FlhB [Geobacter lovleyi SZ]
gi|189422595|gb|ACD96993.1| flagellar biosynthetic protein FlhB [Geobacter lovleyi SZ]
Length = 357
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 94/355 (26%), Positives = 182/355 (51%), Gaps = 3/355 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D +KTE P+ +++E A +G P S+ S ++LA ++ L S + + S
Sbjct: 1 MAEDDDKHSKTEQPTGRRLEKAREKGAPPSSQMLSQSFTLLAGIVVLYLLGSYLMNGLKS 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ--RIPVL 118
+ + +L + ++ ++ + L+ P +L M GI ++++Q
Sbjct: 61 TTVQVYSQIGTFELTE-QNVYTMMLRIFGVLFMLLAPVILAVMSTGILAHIVQDNGRLDF 119
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ +++ G ++++ LV +KS +KI ++G I L + +
Sbjct: 120 QWGRITFDISKLNFISGFGKLFNKEALVEILKSLIKIFVIGWIAYQVLRDELQNITVLAE 179
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
++ + IL + K++ + +++LD+ + ++ LKM+KQE+KDE K G
Sbjct: 180 SDVNGILSYTGHVAFKIVTHTCGIMIVISILDMAYVKWRYIENLKMTKQEVKDETKDMEG 239
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
NP IK + K + R ++ + A ++ITNPTH+A+AL+Y ++ AP+++AKG +
Sbjct: 240 NPEIKGKIKRLQFQAARRRLTKIIPTADVVITNPTHFAVALKYDRSRMVAPMVIAKGADE 299
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A ++++A EH + + E LAR L+ QV N IP Y AVA+++ +Y K
Sbjct: 300 MALAIKEMAREHKVTLVENRFLARELYDQVAENQEIPESLYAAVAEVLAYVYRLK 354
>gi|149908781|ref|ZP_01897441.1| flagellar biosynthetic protein [Moritella sp. PE36]
gi|149808055|gb|EDM67996.1| flagellar biosynthetic protein [Moritella sp. PE36]
Length = 375
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 98/352 (27%), Positives = 181/352 (51%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ + KTE P+ KK +DA EG S+E + IL L +F +P + S
Sbjct: 1 MSDS-STQEKTEEPTQKKRDDAKKEGQIARSKELATAGLILISGSSLTWF-APSFSAFFS 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + T+ D ++V +L ++ +++IP +L+ + ++ + L
Sbjct: 59 ELFTIQMQLTREVTRDPQYMVVMLGEAIINMLKVLIPFILVLNLTTFLLGIMPGGLIFVL 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+++P +++ G+KR+ S + ++ +KS +KI L+ + L+ ++ +
Sbjct: 119 KNIQPKISKMNPISGLKRMVSKDTIIELIKSILKISLISFTLYKVLSLHWHELAAMAQMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L +A + + L + + + +D+ + KLKMSKQEIKDE K + G+P
Sbjct: 179 LLNVLNNAMYIMSITLSFMGAALLIVAAIDLPYQKWSMNKKLKMSKQEIKDEHKGAEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + K I R + ++ A A +I NPTHYA+A++Y + AP +VAKG + +A
Sbjct: 239 EIKQKIKQIQRQMSQKRIDSAVPTADFVIVNPTHYAVAVKYDAARSQAPFIVAKGVDTMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++KIA H++ I E P L R+++ ++ IP Y AVA ++ I
Sbjct: 299 LRIKKIAESHDLDIIEAPELTRAIYHSTQVDQEIPAQLYTAVAYILTHIMQL 350
>gi|167630310|ref|YP_001680809.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
modesticaldum Ice1]
gi|167593050|gb|ABZ84798.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
modesticaldum Ice1]
Length = 362
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 185/346 (53%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE P++K+ +A +G S+E + +L + L + + + LL
Sbjct: 14 GEKTEKPTAKRRSEARKKGQVAKSQEVNTALILLFGFLALRSLGVQTMDGMERMMVYLLG 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ T ++ +S ++ T +++ ++ P +L M G+ + +Q + + +K ++
Sbjct: 74 TVTLEEVTPVS-VITTGTTIAIRTMLMIAPFMLAAMAAGLLASYLQVGFLFSSEGLKMNW 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++++ G+K I+S +LV +KS +K+ ++ + ++ ++ + + + +
Sbjct: 133 GKLNVIAGLKNIFSSRSLVELVKSLLKVSVISYVAYSAVVKHLHLFPKLLGMDVQTAVAA 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V + + + + LD G+ +++ LKMSKQE+KDE KQ+ G+P IK++ K
Sbjct: 193 ISEVAYDVGFRVAVLLLLVAALDYGYQWYKHEESLKMSKQEVKDEFKQAEGDPQIKSKIK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A ++ITNPTH+A+AL+Y APV++AKGQ+ +A K+R +A
Sbjct: 253 QRMREMAMRRMMQELPKADVVITNPTHFAVALKYESGSMTAPVVIAKGQDYVALKIRAVA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+H IP+ E+ LAR+L++ V I IP ++AVA++ +Y K
Sbjct: 313 QDHGIPLVEDKPLARTLYRAVEIGQEIPAELFQAVAEVFAFVYRLK 358
>gi|223038713|ref|ZP_03609006.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
gi|222880115|gb|EEF15203.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
Length = 358
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 183/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA +GN P S++ + F +I + ++
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTIAVAIFVVVALLGFIKDQFFM 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ Q + + +++P + + G+ + L+Q +
Sbjct: 59 LYNYYQDLIGQE--FTRKLLFSVTIITIFRTLLIILPIAVCIAIAGVFANLMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+ +++ +G+K ++S+ L++ +K +K+ V T+ + + + +
Sbjct: 117 KPLEPNLNKINPLKGLKNLFSLKKLIDGIKMILKVTAVFTVGFLMFLSFIKELPHTLFFS 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + + ++L+ + + +LD+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AKG + +A
Sbjct: 237 QVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y
Sbjct: 297 LRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346
>gi|148546753|ref|YP_001266855.1| flagellar biosynthesis protein FlhB [Pseudomonas putida F1]
gi|148510811|gb|ABQ77671.1| flagellar biosynthetic protein FlhB [Pseudomonas putida F1]
Length = 380
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ A +G S+E + + LA LL F ++ +
Sbjct: 1 MAESESGQDKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ + D + L A V P L+L + + + + +
Sbjct: 61 MMRMNF-SLTRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAPIALGGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S+N L +K+ K ++ + + L + +L +
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAIVVLVNDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + + D+ + Q ++KLKM+KQE++DE K S G P
Sbjct: 180 LDQAIIHSVQVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353
>gi|295706267|ref|YP_003599342.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
gi|294803926|gb|ADF40992.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
Length = 360
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 98/345 (28%), Positives = 177/345 (51%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S++ + +L +Y LF + + L
Sbjct: 13 GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ ++ + + HL S + P +L + +G+ +Q + + ++P
Sbjct: 73 TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++++ G KRI+++ LV +KS +KI+ +G + L + +L+ + L
Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V ++ + L + L++LD + + ++MSKQ+IKDE K G+P+IK++ K
Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA
Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
H I + E LAR+LF Q + A+P F+KAVA+++ +Y
Sbjct: 312 KSHEIIMVENRPLARALFDQTKVGDAVPEEFFKAVAEILAYVYRI 356
>gi|51894124|ref|YP_076815.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
14863]
gi|51857813|dbj|BAD41971.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
14863]
Length = 361
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 2/346 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+TE P+ ++++ A EG S + ++A + L + VT + +
Sbjct: 8 ERTEEPTPRRLQKAREEGRVARSTDLVAGLGLVAATLALRGLGGYSVQQVTGGMVGAFET 67
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+L ++ +L R V+P L+ + G+ + +Q + L + P F
Sbjct: 68 LRPLEL-TPETTAAVMQDWALIGLRAVLPIALVVVAIGVVAGTLQTRFIFTLRALVPRFA 126
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ G+ RI+S+ + +K +K+ +G I S+ + I+ + L
Sbjct: 127 TLNPITGLTRIFSLRTVTELVKGLIKLAAIGYIAYRSVRGLVPQFPNLIAQTVPAGLSAI 186
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
V V++ + L + VLD G+ Y ++ ++M+KQE+K E ++ G P +K+RQ+
Sbjct: 187 ADMVLDVMLAVGLAYLVVGVLDYGYQYWEFRRSMRMTKQEVKQEHREQEGAPELKSRQRQ 246
Query: 249 IARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R R + ++ A +++TNPTH+A+AL+Y +++AP +VAKG +L+A +++KIA
Sbjct: 247 RMRELAMRRRALKEVPGADVVVTNPTHFAVALKYEAAKDEAPRVVAKGADLLALEIQKIA 306
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H++P+ E +LAR L+ V + IPP +Y+AVA+++ +Y+ +
Sbjct: 307 RAHDVPLVENRTLARGLYYDVEVGRLIPPEYYQAVAEVLAFVYNLR 352
>gi|260767957|ref|ZP_05876891.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
gi|260615987|gb|EEX41172.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
Length = 376
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +KTE S +K++ A +G P ++E + LA IY S+
Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAIYFYAQLPAIWQSIAG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L S T+ L++ +V L H L++P L+ ++ + S +I +
Sbjct: 61 VFRYNL-SLTRADLDNPMQMVEQLGHSLGMVIELLMPMFLVIIVVTLASSMILGGWLFRP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML
Sbjct: 120 ANLLPKLNKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+++ + V+DI + + +LKM+KQE+K+E K + G P
Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAKG + A
Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++A ++ + I P L RS++ I A+P Y AVA ++ + K
Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352
>gi|168334564|ref|ZP_02692720.1| flagellar biosynthetic protein FlhB [Epulopiscium sp. 'N.t.
morphotype B']
Length = 366
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 174/350 (49%), Gaps = 2/350 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE +SKK D +G S E + +LA I + + ++ +
Sbjct: 14 EQEGRTETATSKKRSDVRKKGQVVKSAELNTALILLAFFIIMRILAPYYVSQCSNVFKNI 73
Query: 66 LASATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+A + + H + ++ ++ + ++ + + Q + L +K
Sbjct: 74 MAQMRTIVVEFNKQHFLHIIRDSLINIILINGILFIVLFLVAFLASYWQVGFKVTLEPLK 133
Query: 125 PSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P + + G K+I+ I +L+ +K+ K+I++GT+ ++ + L F +
Sbjct: 134 PKLNKFNPVNGFKKIFGIRDSLIELLKNLFKVIILGTVFYNTIISQIPSFLGFYDLTIQN 193
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
I + +R++ + L L D W +++ +KM+K ++K+E KQS G+P +K
Sbjct: 194 IAIYVADVIRQIGTNVGLAFLVLAYGDYRWQKYKFEDSIKMTKHDVKEEFKQSEGDPAVK 253
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++ + R +MM+ A +IITNPTH+A+A+ Y + + APV+VAKG + +A+++
Sbjct: 254 SKIRQKMREMSISRMMKTVPEADVIITNPTHFAVAIYYDRVKGIAPVVVAKGTDNMAQRI 313
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++IA N+ I E LAR+L+ V I SAIP Y+AVA+++ +Y +
Sbjct: 314 KEIAAISNVQIVENKPLARALYYTVDIGSAIPQELYEAVAEVLAFVYRLE 363
>gi|168704083|ref|ZP_02736360.1| flagellar biosynthesis protein FlhB [Gemmata obscuriglobus UQM
2246]
Length = 355
Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ ++KTE P+ ++ E+A +G P S E ++A ++ L + ++ +
Sbjct: 1 MAEDVDQESKTEDPTPRRREEARRQGQVPFSAELVGSLVLVAGVLGLRYLGPDLWATMIT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + LL +L ++P L + G+G+ + Q LN
Sbjct: 61 VFRADLPRVGREE-FGTAEAAELLGRTALRMIGAMLPFFGLLLAVGVGASVAQVGFQLNT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+ +++ G+ R++S+ ++V + + K++ + + L +
Sbjct: 120 EKLEPNLDKLNPVGGLGRLFSLGSVVRGLLTVAKVLALAGVAYYVLNGRGGLIASIGMGR 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
A+ V ++ + + +A + V D + +++ L M+K+E+K E+KQ G+P
Sbjct: 180 IGEAAPVAWALVMRLALYLAGAVALVAVFDYAYQRYKFEQSLMMTKEELKQELKQEEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + IAR R + KM+ +AT+++TNPTHYA+ALRY + APV+VAKG+ A
Sbjct: 240 HVKARVRQIARERTKRKMLSEVPKATVVVTNPTHYAVALRYDSNRDSAPVVVAKGKGAFA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ K A E +P+ E P LAR+L V IP ++AVA+++ + +
Sbjct: 300 LRIAKRARESGVPVLERPPLARALH-SVREGQQIPSALFRAVAEVLAFVMKMR 351
>gi|84502407|ref|ZP_01000543.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
HTCC2597]
gi|84389219|gb|EAQ02016.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
HTCC2597]
Length = 374
Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats.
Identities = 108/357 (30%), Positives = 194/357 (54%), Gaps = 4/357 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ NKTE P+ +K+ A +G+ P SRE S+++ + +FF ++
Sbjct: 1 MAENEDQTNKTEEPTPRKLRQAREKGDVPSSREVGNMMSVMSLFLVAIFFLPQLGPTLVG 60
Query: 61 DLHVLLASATQ----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
L + +A Q ++ + + + LS + ++ P ++ + + LIQ
Sbjct: 61 TLRRVFENAGQVRIGEDVQGLRDLGQVTMELSGGLATVLAPVAATMLLAAVAAVLIQGEV 120
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
V+ ++ + P +++ +G K+I+SI++ V F+KS K+++VG I +
Sbjct: 121 VVAVDRITPKLSKINPIQGFKKIFSIDSFVEFLKSVAKVLVVGGISIYIAQIAVRGIWQT 180
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
P S+L + +LI + L + L+V D+ W QW K +MS QEI+DE K+
Sbjct: 181 EGVTPESVLSYIGRYAALLLITVTLLLTVLSVADVMWKRFQWMKKQRMSVQEIRDEHKEM 240
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P+I+ ++ R R + ++ A +AT+++TNPTH+A+ALRY + APV VAKG
Sbjct: 241 EGDPLIRAKRAEQRRKRAQQRITTAVPQATVVLTNPTHFAVALRYDNGTDQAPVCVAKGV 300
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+L+A ++RK+A E+ +P+ E LAR+L+ I+ IP ++AVA++I + K
Sbjct: 301 DLMAAQVRKVARENEVPVVENKPLARALYDVAEIDEEIPFEHWQAVAEIIGYVMDLK 357
>gi|157147128|ref|YP_001454447.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
BAA-895]
gi|157084333|gb|ABV14011.1| hypothetical protein CKO_02905 [Citrobacter koseri ATCC BAA-895]
Length = 377
Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 169/349 (48%), Gaps = 3/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +K+E P+ K+ A +G+ P S++ ++ + +LA L F +
Sbjct: 2 SSSGDKSEKPTPGKLRKAREKGDLPRSKDLTMAAGLLASFFTLAAFLPYYQQLIRESFAA 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ A + L+D + + + R + + + + I + L+ + +K
Sbjct: 62 VGEMAGR--LDDPTALNQFMLLNVWVVLRFIATLIPIPLC-CIVASLVPGGWIFTPTKLK 118
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P FK++S GIKR++S ++ K +K ++ T++ + + ++ +L
Sbjct: 119 PDFKKLSPISGIKRMFSASHYTEVGKMLLKCGIILTVLYMMVHDSMHALLHLQQLYLRQA 178
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ F R V + I +LD+ S + K++M+KQE+K+E K + GNP IK
Sbjct: 179 IGQGFAIFRHVFSYFIAVIVIFALLDVPLSKFMFTKKMRMTKQEVKEEYKNNDGNPQIKG 238
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R + + R ++ A +IITNPTHYA+AL+Y +AP +VAKG + +A +R
Sbjct: 239 RIRQLQRQMAMGQIARTVPTADVIITNPTHYAVALKYDPQRAEAPYIVAKGIDDVALWIR 298
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ HNI + E P LAR+++ +N IP ++A+A ++ + K
Sbjct: 299 EVGANHNIEVVEFPPLARAVYYTTRVNQQIPTQLFRAIAHVLTYVMQLK 347
>gi|154249642|ref|YP_001410467.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
Rt17-B1]
gi|154153578|gb|ABS60810.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
Rt17-B1]
Length = 384
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 177/345 (51%), Gaps = 1/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE + +K + A EG PISRE L + + I ++ + +
Sbjct: 36 DKTEKATPRKRQKAREEGQVPISRELVSGLGFLFASMVFILLGKRLIDALITSTQSVFE- 94
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + + + A +V +L +F + L+Q + +K
Sbjct: 95 ISDNDIRTLEDFIIYASQTFRPAFLVVAILVLGTALFSLIIGLLQTRFLFTFKPLKMDLN 154
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ G+KR++S+ +L +K+ +K+ ++G + + N+ +L + ++
Sbjct: 155 RLNPITGLKRMFSLRSLFELLKAILKLAIIGFVGYSVIKGNFDKVLLTVDSSLIDGTLIM 214
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + +++I + + +++ D +S +++ +KM+KQEIK+E K+ GNP IK RQ+
Sbjct: 215 WGVLSELIIKCGIALIVVSIADYYYSRYEYEQNIKMTKQEIKEEFKEIEGNPEIKRRQRQ 274
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I H+MM+ +A+++ITNPTH+A AL+Y E+ AP LVAKG + +A ++ IA
Sbjct: 275 IMMQFAMHRMMQEVPKASVVITNPTHFACALKYDPEEDFAPKLVAKGVDKVALRIIDIAR 334
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++PI P LAR ++ + IP YKAVA+++ +Y +
Sbjct: 335 KNDVPIVRNPRLAREIYYSTELGDIIPEKLYKAVAEVLAYVYTLR 379
>gi|325295424|ref|YP_004281938.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065872|gb|ADY73879.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 347
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + KTE + ++ + A EG S++ + ++L L F+ +
Sbjct: 1 MAKDPS---KTEKATPRRRQKAKEEGQVLKSQDIPIAFTLLITSTLLYFYIPFAYKKLLQ 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ L + + + + L++P L+ + GI S +IQ + +L
Sbjct: 58 LFTFDFRTSNNVNLWNNYLVSA------KTFALLILPVFLVLFLGGIFSNIIQFGFLFSL 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G+ R++S+ L ++ +K+I+ + S +
Sbjct: 112 KPLLPKLDNINPIKGLGRLFSLKTLFETFRNTLKLIIALAVGYFSGKYILSDFFSLSFIS 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + + + L + D + ++ LKMSK+EIK+E KQ G+P
Sbjct: 172 LNNQIILMLKYTLLLFFIFGLLSLPIAAADFLFRRWEYEENLKMSKEEIKEERKQYEGHP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+ + R +MM +A ++ITNPTHYA+ALRY + + AP ++AKG + IA
Sbjct: 232 LIKSAIRRKQREIAMKRMMAEIPKADVVITNPTHYAVALRYERGKMHAPKVIAKGVDNIA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++KIA EHNIPI E P LAR L++ I S IP FY+A+A+++ K+Y KK
Sbjct: 292 LKIKKIALEHNIPIEENPYLARVLYESCDIGSFIPEEFYQAIAKILAKVYKKK 344
>gi|16125329|ref|NP_419893.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
gi|221234068|ref|YP_002516504.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
gi|1147737|gb|AAA85127.1| third gene in fliQ operon; membrane protein homolog [Caulobacter
vibrioides]
gi|13422379|gb|AAK23061.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
gi|220963240|gb|ACL94596.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
Length = 361
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 109/353 (30%), Positives = 200/353 (56%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ P++KTE PS+KK+ DA +G+ S + +S+ + +L + +
Sbjct: 1 MADDTDPESKTEEPSAKKLSDARAKGDVIKSADIPQLASLAGAVSVILLAGGWLTRDLMA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +A A L ++ L L+A ++ +++ G +++ Q +L
Sbjct: 61 ALTPFIAHAGTIDLSSGGAMIVL-KQALLAALPALVLVMVVTAFAGAAAHIAQTGFLLTP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F+++ L +G+ RI+ + +V F+KS VK +L G I L + + + + +
Sbjct: 120 EKIKPDFQKLDLIKGLGRIFGPDGMVQFLKSAVKFLLTGVIAYFVLKPHVGEVRNLVGMD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +++ A + +LI ++L + + D W ++ ++++M+ QE+K+E KQS G+P
Sbjct: 180 PAAMIPEAMKLSKGLLIAVILLLVATSAFDYFWQRMRFMNRMRMTLQEVKEEFKQSDGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +++ I R R +MM+A +AT+++ NPTHYA+AL+Y Q E AP+ VAKG + +A
Sbjct: 240 HIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQGETPAPLCVAKGVDDLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R +A EH +P+ E+P LAR+L+ V I+ IP ++AVA++I I + K
Sbjct: 300 LKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAKVISFILNGK 352
>gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016]
gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 609
Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 189/347 (54%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + +K DA +G P S+E +L ++LA + +L V + +
Sbjct: 265 SDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITFF 324
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L D + + + + + +P + ++ G+ + Q ++ + +KP
Sbjct: 325 NNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKPD 383
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G KR++S+ +++ +KS I +VG I + +NY ++ S N SI+
Sbjct: 384 FSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIVK 443
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + ++D + Q+ L+MSKQE+K+E KQ G+P IK++
Sbjct: 444 AISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSKI 503
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K+
Sbjct: 504 KQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKKV 562
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y +
Sbjct: 563 AKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 609
>gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
kluyveri DSM 555]
gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium kluyveri DSM 555]
Length = 606
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 189/347 (54%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+KTE + +K DA +G P S+E +L ++LA + +L V + +
Sbjct: 262 SDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITFF 321
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L D + + + + + +P + ++ G+ + Q ++ + +KP
Sbjct: 322 NNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKPD 380
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F +++ G KR++S+ +++ +KS I +VG I + +NY ++ S N SI+
Sbjct: 381 FSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIVK 440
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + ++D + Q+ L+MSKQE+K+E KQ G+P IK++
Sbjct: 441 AISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSKI 500
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K+
Sbjct: 501 KQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKKV 559
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y +
Sbjct: 560 AKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 606
>gi|320354335|ref|YP_004195674.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
2032]
gi|320122837|gb|ADW18383.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
2032]
Length = 355
Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 186/353 (52%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E A +TE+PS+K+ D +G SRE + L++ +FF
Sbjct: 1 MAEEPASGERTESPSAKRRADFRKKGQVAQSREVQTAALFTLLLLFWVFFAPIFWDGTKE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL ++ + S ++ L L +S + ++ P L+ ++ G + +Q +
Sbjct: 61 MVAVLWRNSGDYAITT-SSLMQLGYFLGVSLAMILAPLFLVALLVGFLATFLQIGWLFTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ +G+ R +S +LV +KS +K+ L+G I ++ L
Sbjct: 120 EPLIPDLTKLDPIKGMGRFFSKRSLVEVIKSLLKVGLIGWIAYKTVAGEMDQALLLTEMP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + T V+ + + L +LD + + K+KM+KQE K+E+K++ G+P
Sbjct: 180 LDDTILYLAKTSALVMAKVAAIMIVLAILDYAFVRWEMEEKMKMTKQEQKEEMKETEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++ +SI + R +MM A A ++ITNPTH A+A++Y DAP+++AKGQ L+A
Sbjct: 240 HIKSKIRSIQQQMARRRMMAAVPTADVVITNPTHIAVAIKYEAGTMDAPLVLAKGQELVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+R+IA E++IP+ E P +AR L +V + AIP +KAVA+++ +Y K
Sbjct: 300 EKIREIARENDIPLVENPPVARLLHSKVEVGQAIPEELFKAVAEILAYVYSLK 352
>gi|296121646|ref|YP_003629424.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
3776]
gi|296013986|gb|ADG67225.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
3776]
Length = 360
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 175/352 (49%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ D KTE P+ ++ +A +GN S++ + + +L L + +
Sbjct: 1 MAEDESGD-KTEDPTERRRSEAREQGNVVKSQDLTAAALMLGSAGVLWWHGRNVAEYMAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L SA D + +V L + V P L+L + I L+Q + +
Sbjct: 60 LMRNSL-SAAPWTTFDQNDLVSLAWAHLGESGWQVAPLLILLALAAIAINLLQVGFLFSP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P ++R++ GI+R++SI ++ + K+ L+G++ T + +
Sbjct: 119 EVLQPKWERINPLSGIQRLFSITSVARLGANLAKLALLGSVATWFVYDGLHRFAALAHQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + ++ + L I + D + + ++ LKMSKQEI+DE K+ G+P
Sbjct: 179 LTVVAVVAGSELISLIFWMALAIFVAALADFAFQWWKYEQDLKMSKQEIRDEYKEMDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+I+ R++ R + + +++ A ++ITNPT A+A++Y AP++VAKG +A
Sbjct: 239 LIRMRRREAHRKLTQGRELQSVKTADVVITNPTEIAIAIKYDVATMPAPIVVAKGAGELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R++A E+ +PI E +AR+L+K + IP Y A+++ +Y
Sbjct: 299 AQIRRLAAENGVPIIERKPVARALYKLTRVGDPIPSDLYAVFAEILAYVYKI 350
>gi|206889713|ref|YP_002249863.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741651|gb|ACI20708.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 353
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 177/346 (51%), Gaps = 3/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+TE + ++ E A +G P SRE + +Y + F + S+ +
Sbjct: 6 QERTEQATPRRREKARQKGEVPRSRELTGIIGTWMIFLYFV-FSGTFLISIMQHMKEAFT 64
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ S I+ ++ +P + + + + IQ + + P
Sbjct: 65 RVKNPE-FVASAIITIIKDEIKWYFIQFLPIGGVLLFGVLLVHFIQTGFLFTGATLVPDV 123
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++S +GIK+++S+N L +K +K++ +G +I L ++ + I + +I
Sbjct: 124 SKISPLKGIKKLFSLNALFETIKGILKLVALGIVIYFVLKKDVNILPLLIDMDVKAIAGI 183
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+F + ++++ L+ + +D + Q+ L+M+KQEIK+E K++ G+P+++ R +
Sbjct: 184 SFQKIYQLILACLIMLTVFAGIDFAYQRWQYERNLRMTKQEIKEEFKETEGSPMVRARIR 243
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
S+ R R +MM+ +A ++ITNP H A+ ++Y +AP +VAKG NL+A+++++IA
Sbjct: 244 SLQREMARKRMMQEVPKADVVITNPLHLAVCIKYDSKNMNAPAVVAKGANLLAERIKEIA 303
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+PI+E LAR+L++ +P+ IP YKAVA ++ +Y K
Sbjct: 304 RASGVPIYENKPLARALYR-IPLGEEIPEALYKAVATILATVYKIK 348
>gi|104782805|ref|YP_609303.1| flagellar biosynthesis protein FlhB [Pseudomonas entomophila L48]
gi|95111792|emb|CAK16516.1| flagellar biosynthetic protein FlhB [Pseudomonas entomophila L48]
Length = 380
Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 100/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ +
Sbjct: 1 MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGQMAETLMT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ + D + L A V P ++L + + + + +
Sbjct: 61 LMRANF-TLTREVIVDERSMGAFLLASGKMAIWSVQPVMILLFVISFVAPIALGGFLFSG 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P F R++ GIKR++S++ L +K+ K +++ + + L + +L +
Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSLHALTELLKAIAKFLVILVVALVVLASDRQALLSIANEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA V + + + + D+ + Q + KLKM+KQE++DE K S G P
Sbjct: 180 LEQAVIHAVQVVGWSALWMAAGLLLIAAADVPFQLWQAHKKLKMTKQEVRDEYKDSEGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
+K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAKGTDFL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A KMR+I EH + I E P+LAR+++ + IP Y AVAQ++ ++ +
Sbjct: 300 ALKMREIGVEHKVQILESPALARAIYYSTELEEEIPAGLYLAVAQVLAYVFQIR 353
>gi|90418395|ref|ZP_01226307.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
SI85-9A1]
gi|90338067|gb|EAS51718.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
SI85-9A1]
Length = 362
Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 126/349 (36%), Positives = 205/349 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+++ +KTE P+ KKI DA+ +GN P+SREA + +S+LA + ++ G+ +
Sbjct: 1 MSDSEDKSSKTEFPTEKKISDAVEKGNLPVSREAPILASLLAIMAFIALQAREGVQRLLL 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + Q L+ + + +L L+ A ++P LF+ G+ S ++Q P +N+
Sbjct: 61 SLQTTFENPLQWDLDTSADALHVLHMLAREAVWFILPAAGLFVAGGVISSVLQNPPQINI 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P + VS G RI+ + L F K+ K I +G ++++ L ++ TM+ + A+
Sbjct: 121 ERIRPKWSNVSPASGFTRIFGLRGLTEFGKAVFKFITIGVVVSMLLVSSFPTMMQAMFAD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + K+L I + L D+ + W L MSKQEIKDE KQ+ G+P
Sbjct: 181 PVLVPELILQMAMKLLSGISIATIVLVAADLAMTRFHWRRDLMMSKQEIKDENKQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK RQ+ I R R+R +MM AT++I NPTHYA+ALRY + E AP++VAKG +L+A
Sbjct: 241 QIKARQRQIGRDRVRRRMMADVPLATLVIANPTHYAIALRYNREEGGAPMVVAKGADLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R+IA +++P+ E+ LARS++ V I+ IPP F+KA+A++IY +
Sbjct: 301 LKIREIAEANDVPVIEDKLLARSMYDHVEIDQMIPPKFFKAIAEIIYFL 349
>gi|311030112|ref|ZP_07708202.1| flagellar biosynthesis protein FlhB [Bacillus sp. m3-13]
Length = 362
Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE + KK +D +G S + + ++A + L
Sbjct: 13 SGEKTEKATPKKKQDTRKKGQVAKSADVNTSFVLIAVFLCLFAIGPWMKDETLKLFEHSF 72
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
++ + + + L + ++ P +L ++ + + +Q P+ + +
Sbjct: 73 RVYLLEEV-TVQKVHMIFLELIMQLIWIIGPIMLAALLGAVIANYLQVGPLFSTEAIHMK 131
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ +G KRIYS+ +V +KS +KI+ VG I L + +L N H
Sbjct: 132 LNKLDPIQGFKRIYSVRAIVELVKSMLKIVFVGIITFSILWMSLEEVLILSQKNLHEAFA 191
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ + + L++ D + + + ++MSK ++KDE K++ G+P+IK++
Sbjct: 192 FLGTLTVRMGLFAGGALLFLSIFDYLYQKYDYEKNIRMSKHDVKDEYKKAEGDPLIKSKI 251
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K R +MM+ +A +IITNPTH+A+AL+Y +++ DAP+++AKG + +AKK+++
Sbjct: 252 KQKQREMAMQRMMQDVPQADVIITNPTHFAIALKYDESKGDAPIVLAKGVDYVAKKIKEK 311
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A EHNI E LARSL+ Q I AIP F++AVA+++ +Y
Sbjct: 312 AKEHNIVTVENKPLARSLYSQAEIGDAIPEEFFQAVAEILAYVYRL 357
>gi|218887105|ref|YP_002436426.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758059|gb|ACL08958.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 356
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 93/354 (26%), Positives = 181/354 (51%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTE + K+ A N+GN P S+E + +ILA + LL + + +
Sbjct: 1 MAQRDPS--KTEKATPKRRNKARNKGNVPKSQELTKALTILAGSVGLLSYIDFLAKDMQT 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +A + + +++ LL L+ + +++P +L +Q +
Sbjct: 59 LFRHFLGNAFGF-IPNQQNVIKLLMWLAGELAAMLLPIMLFIGFTAWLVLRLQVGKLWTT 117
Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
K ++ R ++ +KR++ S + KS ++ + +G I + L A
Sbjct: 118 EVFKFNWSRFNILAALKRMFVSPETFMRLGKSLLQALFIGVAPYIIIRREMHNFLPLYYA 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ I + T ++ L+ + + + D ++ + LKM+K E KDE KQ+ G+
Sbjct: 178 DAQGISAYMLKTGWDMVRYALVPMFIIAIADFWYTRWSYEENLKMTKDETKDERKQAEGD 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P+++ +Q+ + +M++ +A ++ITNPTH+A+ALRY TE AP+++AKG + +
Sbjct: 238 PVVRAQQRRKMMQMMAKRMLQDVPKADVVITNPTHFAIALRYDATEAPAPIVLAKGADNL 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+K++++A EH +PI E LA++L+K V + IP ++AVA ++ ++ K
Sbjct: 298 AQKIKEVAREHGVPIRENKPLAQALYKAVEVGDMIPAELFQAVATVLASLWKFK 351
>gi|120597286|ref|YP_961860.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
gi|146294569|ref|YP_001184993.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
gi|120557379|gb|ABM23306.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
gi|145566259|gb|ABP77194.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
Length = 376
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 172/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ +KTE + +K+ A EG P S++ + + +L C + L + + S
Sbjct: 1 MSQTQ-QQDKTEEATPQKLRKARKEGQVPRSKDLASAALVLGCSVMLTS-NANWFATKVS 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L T+ +L+ +V L + ++ P ++ + + + P+ N+
Sbjct: 59 GLTKYNMLLTRAELDQPDMMVRHLGTSLVEMLTILSPLFIMVALLAAIAGALPGGPIFNV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+ G+ RI+S +LV +KS +KI+L+ +I+ + L + ++L +
Sbjct: 119 GNANFKYSRIDPIAGVGRIFSTQSLVELLKSCLKIVLLISIMLVFLNGHLQSLLSYSHRP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + ++ + + + + +D+ + Y +L+MS+QE+KDE Q G P
Sbjct: 179 IDEAVRDGINLLSQGMLYLGVGLLVIAFIDVPYQYWHHKKQLRMSRQEVKDEHTQQEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A
Sbjct: 239 EIKAKIRQLQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVLTKGTEELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A +H + I + P L R+++ ++ IP + A+A ++ + K
Sbjct: 299 LYMRELAKKHGVEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351
>gi|78355426|ref|YP_386875.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78217831|gb|ABB37180.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 357
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M + D +TE + K+ A EGN P S+E +A I L + +
Sbjct: 1 MPQQDPS--RTEQATPKRRRKARGEGNVPKSQEVPKTFVTMAGTIALYVYMDHIASEMMG 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+A + + LL +S + +++P +L + +Q +
Sbjct: 59 LYEHFFRNAVMFEA-TPQAVYDLLLWISGKLALMLLPIMLFLALVAYVVIRLQVGKLWAP 117
Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
KP F R +L +G+KR++ S L+ KS + ++G I + L A
Sbjct: 118 KVFKPKFARFNLIKGLKRLFISPQTLIRLGKSILMAAVIGIAPYIVIRNEMHHFLPLFYA 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P +I + K++ +L + + + D+ ++ + LKM+K E+KDE KQ+ G+
Sbjct: 178 TPTAIGVYMLEMGMKMVKYAMLPMLVIAIADLWYTRWDYEENLKMTKDEVKDERKQAEGD 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K +Q+ + +M+E +A +++TNPTHYA+ALRY E APV++AKG + +
Sbjct: 238 PAVKAQQRQKMMEVMAQRMLENVPKADVVVTNPTHYAVALRYDAVEAPAPVVLAKGVDHL 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A++++++A EH +PI E LAR+L++QV + IP Y+AVA L+ + K
Sbjct: 298 AERIKEVAREHRVPIRENVPLARALYRQVEVGDMIPEELYQAVASLLASLMKFK 351
>gi|294500921|ref|YP_003564621.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
gi|294350858|gb|ADE71187.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
Length = 360
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 98/345 (28%), Positives = 177/345 (51%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S++ + +L +Y LF + + L
Sbjct: 13 GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ ++ + + HL S + P +L + +G+ +Q + + ++P
Sbjct: 73 TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++++ G KRI+++ LV +KS +KI+ +G + L + +L+ + L
Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V ++ + L + L++LD + + ++MSKQ+IKDE K G+P+IK++ K
Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA
Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
H I + E LAR+LF Q + A+P F+KAVA+++ +Y
Sbjct: 312 KSHEIIMVENRRLARALFDQTKVGDAVPEEFFKAVAEILAYVYRI 356
>gi|238916767|ref|YP_002930284.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
27750]
gi|238872127|gb|ACR71837.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
27750]
Length = 372
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 87/355 (24%), Positives = 169/355 (47%), Gaps = 5/355 (1%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE +SKK++D EG S+E S++ I + + +
Sbjct: 14 AKDGPGGEKTEPATSKKLDDVRKEGQVAKSKELITAVSLMTLFIIIKIYVGNIGTKLIDS 73
Query: 62 LHVLLASA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ K ++ + + VIP L++ ++ I +Q+
Sbjct: 74 FKTIYGLMGKVIDDSSKGVTVNMAASIASQAFTIILNAVIPILIIAVIIAILGNALQQRW 133
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
++ + P +++ G KR++S+ L +K+ + ++ ++ + +N +L F
Sbjct: 134 MVTAKPLAPKASKINPLNGFKRLFSVRQLFELLKAIAMMSIIVIMVYNCVKKNMNILLTF 193
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
++ L + + I I + +D+ + H++ + M+KQE+KDE K +
Sbjct: 194 YDVTLYTALATVGNIIINLGIQISAVFLVVGFVDLLYQRHKFKNDNMMTKQEVKDEFKNA 253
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P +K + + + R +MM+ A ++ITNPTH+A+AL+Y E APV++AKG
Sbjct: 254 EGDPQVKGQIRRKMQEISRRRMMQQLPEADVVITNPTHFAVALKYEPDEGKAPVVIAKGA 313
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ +A +++ A E+NI I E LAR L+ V I + IPP Y AVA+++ +
Sbjct: 314 DYLAFQIKDRAKEYNIAIVENKPLARILYHNVDIGTEIPPELYYAVAEILASVLR 368
>gi|114777581|ref|ZP_01452562.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
gi|114552052|gb|EAU54569.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
Length = 355
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 103/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVT 59
M++ +TE + K+ EDA +G S+E S + + LI + S +
Sbjct: 1 MADEQDKSQQTEEATPKREEDARKKGQIATSKEPSTAIAFTVISLIVITGLGSWFGEQMQ 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L+ A K + LL + +V+P + M+ G+ + PV
Sbjct: 61 HMLTNYLSGAVHIKA-TGEGMQKLLISAVTDMAMVVLPIAVPIMLLGLLVTFMVSGPVFT 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P F+++S +GIKR++S L F+KS +K++L+ ++ + +L
Sbjct: 120 FETMIPKFEKISPLKGIKRLFSTKALAEFIKSVLKLVLISVACATIVSGMFSEILHTALK 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P I F K+ ++ + + + D+ + + L+MSK+E +DE K S G+
Sbjct: 180 DPADIAALTLFGSVKITTLVAVIFVVIALADVLYQRWEHAKSLRMSKKEQRDEHKDSEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K + + I + +++MM A +IITNPTH ++AL Y AP ++AKG+ +
Sbjct: 240 PQLKAKIRQIQMQQAQNRMMSDVPDADVIITNPTHISIALAYDPLSPGAPRVLAKGKGHL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA EH+IP+ E LARSLFKQV + IP V ++A+A ++ +I+ K
Sbjct: 300 AAKIREIAREHHIPMRENKPLARSLFKQVKVGDEIPEVLFEAIAIILAEIFRLK 353
>gi|269836606|ref|YP_003318834.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
20745]
gi|269785869|gb|ACZ38012.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
20745]
Length = 361
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 186/353 (52%), Gaps = 6/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E +TE + K+ +DA +G+ P S E S + +L L +L ++ ++T
Sbjct: 1 MAE-----ERTERATPKRRQDARRQGDVPRSAELSAAAGLLGALAFLQWYGGQAAGALTG 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L ++ I L + +R+V P + + ++ GI + + Q PV L
Sbjct: 56 YFRGTFGGLSPSDLTPLA-IQNLAWESGMVFARVVGPLVAVVLVVGIAAGVAQTGPVFAL 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP FKR++ G+KRI+S K+ VK++++ + L A+
Sbjct: 115 AALKPDFKRINPAAGLKRIFSRRGAFETFKALVKLVIIAALTYPVLRAEVAHFASLTGAH 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SI T+ KV + L + D + ++ +L+M++QE+++E++Q GNP
Sbjct: 175 PVSIAEAVGRTLVKVGLRAAGAFFILALADYAFQRWEYERRLRMTRQELREELRQIEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R + + R R +MM A +AT+++TNPTH A+A+RY APV+VAKG L A
Sbjct: 235 ELKSRIRQLQRQLARGRMMHAVPKATVVVTNPTHLAVAIRYEMRTMPAPVVVAKGSGLTA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++IA EH +P+ E LA++L++ + + IP Y+AVA +I +Y +
Sbjct: 295 ERIKQIAREHAVPVVENKPLAQALYRMADVGAEIPVALYEAVADVIAYVYRLR 347
>gi|261341518|ref|ZP_05969376.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
35316]
gi|288316316|gb|EFC55254.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
35316]
Length = 377
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 177/353 (50%), Gaps = 6/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ A +K+E P+++K+ A +G+ P S++ ++ +LA I + FF V
Sbjct: 1 MA---AGGDKSEKPTAQKLRKAREKGDLPRSKDLTMAVGLLASFITMGTFFPYYKTLVEE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A + D + L++ I L + I + L+ V +
Sbjct: 58 SFTSVGMMAGRL---DDQGALSQFLMLNVWVIIRFIITLAPIPLACIVASLVPGGWVFTV 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP FK++S G+KR++S ++ V+ K +K ++ ++ + + +L +
Sbjct: 115 SKLKPDFKKLSPISGVKRMFSSSHYVDVGKMMLKCGIILAVLYTMVHSSLNPLLHLQRLS 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++H F + VL+ + I +LD+ + + K++M+KQE+K+E K + GNP
Sbjct: 175 LSQAIHHGFGILHHVLVYFIAVIVIFALLDVPLAKFMFTKKMRMTKQEVKEEYKNNDGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + R ++ A +IITNPTHYA+AL+Y + +AP +VAKG + IA
Sbjct: 235 QIKGRIRQLQRQMAMGQINRTVPEADVIITNPTHYAVALKYDPKKAEAPYIVAKGMDDIA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A H I + E P LAR+++ +N IP ++A+A ++ + K
Sbjct: 295 LHIRDVARHHQIEVVEFPPLARAVYHTTRVNQQIPAQLFRAIAHVLTYVMQIK 347
>gi|157959922|ref|YP_001499956.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
700345]
gi|157844922|gb|ABV85421.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
700345]
Length = 376
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 171/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +KTE + KK++ A +G P S++ + + ++ C + L V
Sbjct: 1 MS-KDTGQSKTEDATPKKLKQAREQGQVPRSKDFTSAALVMGCALLLTTSAGEIGARVAQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L T+ +L++ + L L ++ P +L + + + + + N
Sbjct: 60 -LARTNMQFTKAQLDEPGMMTRHLGQALLEILYILAPLFILVALIAMIAGAMPGGWIFNF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+ G+ R+ SI +L +KS +KI+L+G I+ + L +N T+L F
Sbjct: 119 GNAGFKYSRIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + L + + +D+ + Y Q +++LKMS QE+KDE KQ G P
Sbjct: 179 IDEAITRVIDMLSLGVFYLGLGLLFIACIDLPYQYWQHHNELKMSLQEVKDEHKQQEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + + R + + A +++ NPTHYA+AL+Y + DAP ++ KG + +A
Sbjct: 239 EIKAKIRQMQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVLTKGTDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A H + I E P L R+++ I IP + A+A ++ + +
Sbjct: 299 LYMREVAKRHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVLTYVMQIR 351
>gi|325109030|ref|YP_004270098.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
5305]
gi|324969298|gb|ADY60076.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
5305]
Length = 357
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D K+E P+ ++ +A N+GN S + + + +LA L+F
Sbjct: 1 MADDDQG-EKSEDPTDQRRREARNQGNVAKSVDVNAAAIMLAATGGLMFLGPDIAKGFAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L +L D ++ ++ + + +P +LL ++ + + L Q +
Sbjct: 60 LLRRYLEGPPVLEL-DRFMVMREFWNIFQAVAGFALPFMLLMLLTAVVANLAQIGVLFTT 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++R++ G +RI+S+ F S KI+ + + L + +
Sbjct: 119 EPLGFKWQRINPVSGFQRIFSVAAFAKFGTSVGKIVAMAGVACWFLYLKLPALQGMGQSE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P IL + ++ + L + + +LD + + LKMSKQEI+DE+K G+P
Sbjct: 179 PSVILGTIGSVILELAFQLALAMLIIALLDYSFQKWKHEQDLKMSKQEIRDEMKNMDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ R+K R K + A A +++TNPTH ++AL+Y T++ APV+VAKG IA
Sbjct: 239 HIRQRRKEAHRKLAEAKELNAVRDADVVLTNPTHLSVALKYDSTKHPAPVVVAKGAGEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R+IA E+N+PI E LAR+L++ V + IP Y+ +++ +Y
Sbjct: 299 MRIREIARENNVPIIERKPLARALYRDVKVGHPIPAEMYEVFVEIMAYVYRL 350
>gi|157164760|ref|YP_001466322.1| flagellar biosynthesis protein FlhB [Campylobacter concisus 13826]
gi|112800831|gb|EAT98175.1| flagellar biosynthetic protein FlhB [Campylobacter concisus 13826]
Length = 357
Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 184/350 (52%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE + KKIEDA +GN P S++ S F +++ + LL + V S
Sbjct: 1 MAGED--QEKTEEATPKKIEDAKKDGNVPKSQDLSGFVTLVIAIGVLLAMLNFMKDQVIS 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
Q + + ++ + A +++P + + GI + ++Q +
Sbjct: 59 LYIYYSKFIGQPL--TLPTVKMIVVNTFGRALLMILPVCICVAVAGIIANVMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F +++ +G+K ++S+ + +K VK+ +V + + + + +
Sbjct: 117 KPITPNFGKINPLKGLKNLFSMKKAIESVKIVVKVSIVFGVGFYFFLQFIKELPHTLFFS 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++ ++L + + + D+ Q++ L+MSKQEIKDE KQ G+P
Sbjct: 177 MFDQLAWLKEKLIILVSVMLFILFVIGLADLLIVRFQYFKDLRMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + +MM+ +A ++ITNPTHYA+A+RY ++ ++AP+++AKG + +A
Sbjct: 237 QVKGRIRQAQMRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++K+A E+ + I+E P LAR L++ ++ IP ++AVA+++ +Y
Sbjct: 297 LQIKKVAVENGVQIYENPPLARELYRVCEVDDTIPAHLFRAVAEVLSFVY 346
>gi|319944146|ref|ZP_08018424.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
51599]
gi|319742640|gb|EFV95049.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
51599]
Length = 384
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 170/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +++ S +++ A EGN P SR+ + + A + L +
Sbjct: 1 MAE-TSKEDRQLPASEQRLRKAREEGNVPRSRDVAHLLVMGAGMGALALMGPSLADGMRR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A Q +L + + L H R + L + I + I L++
Sbjct: 60 LMASTFAFDGQVRLYFLDALQPALAHFGDLGWRTLAILLSVCAAA-IAASTIPGGFNLSV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R+S G+KRI+S+ NLV F+K + L+G I + + + +
Sbjct: 119 KALGVKISRISPASGLKRIFSLRNLVEFLKLSLLASLLGAIGSWYAMDRFPEFAALSHGS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ HA V L + +L + L + D+ + + + + L+M++ E K E ++S G+P
Sbjct: 179 LAGSVSHAMALVVGGLGLSMLLLFALALFDVPFQWFRHRADLRMTRDEAKREHRESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + +S R R +M+ A A I++ NPTHYA+A+RY + AP +VAKG + +A
Sbjct: 239 QLKGQIRSRQREAARRRMLSAVPSADIVVVNPTHYAVAIRYDEAAGGAPRVVAKGLDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA E +P+ P LAR+L+ V ++ IP Y AVAQ++ +Y K
Sbjct: 299 MRIQAIARESGVPVLSAPPLARALYAHVELDQEIPQALYVAVAQVLVYVYQLK 351
>gi|307720616|ref|YP_003891756.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
16294]
gi|306978709|gb|ADN08744.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
16294]
Length = 350
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 99/352 (28%), Positives = 176/352 (50%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KKIEDA EGN P S++AS ++ ++ +L F +
Sbjct: 1 MA---DDQEKTEEPTPKKIEDARKEGNVPKSQDASGVLTLFVAILGVLMLFPFMAEHMIH 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D + + +V+P + G+ + L Q +
Sbjct: 58 LFRYYFSLIGMPV--DKLFAMDIAIVTIKEFLLMVLPLATAVAISGVIAALAQFGFLFTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FK++ +G K ++S+ L+ +K +K + I +
Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSLKKLIEGVKVTLKSFTTLGVGFIFFFYFIQELPTVALFG 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H L + + ++L I ++D+ Q++ LKMSKQEIKDE+K G+P
Sbjct: 176 LHDQLMWLKDKMIIIAFVMLFIIFIFAIIDVIIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK++ + I + +MM A ++ITNPTHYA+A++Y ++++ AP++VAKG + IA
Sbjct: 236 LIKSKIRQIQMEASKKRMMAEVPNADVVITNPTHYAVAIKYDESKSHAPLVVAKGMDNIA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++KIA E+++ I + P LARSL+K+V ++ IP + AVA+++ +Y
Sbjct: 296 QQIKKIARENSVHIVQNPPLARSLYKEVDVDKPIPEALFSAVAEVLAYVYKM 347
>gi|108758626|ref|YP_630670.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
gi|108462506|gb|ABF87691.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
Length = 359
Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 170/351 (48%), Gaps = 4/351 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D KTE PS KK++D+ +G S++ S +L L + + +TS
Sbjct: 2 SDESGEKTEEPSQKKLDDSRKKGQVWKSKDLSGVGVLLVGLAAVKGSWDMLETELTSLFL 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLNLNH 122
T D+S L L L A LV +P L + G +Q + ++
Sbjct: 62 FSFDHLTNPV--DLSVATGQLLFLGLRAVVLVSLPVLAGGAIVGGLMEYLQVGTLFTMDP 119
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ P ++++ +G+K +++ +V +K+ +KI + ++ + ++ + + + +
Sbjct: 120 LIPKMEKLNPIQGMKNLFNKKAIVELLKNLIKISVTAYVVYGVVRDSMPMVAETLRQDTR 179
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I+ V +V + L V D+ W + + M+K+E+K E KQS G+P
Sbjct: 180 GIMAIMGELVTRVATRVALLFVLFGVFDVWWQRKSFMKDMMMTKEEVKKEYKQSEGDPHH 239
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K ++K + + + MEA A +I+TNP H A+AL+Y + ++ AP ++A+G + A++
Sbjct: 240 KAKRKEMHQEIMEGAQMEAVREADVIVTNPDHVAVALKYDREKDGAPRVLARGIDFKAER 299
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ IA E ++P LA +L + V + +P Y AVA+++ +Y K
Sbjct: 300 IKAIAREQDVPTLRNVPLAHALLR-VEVGHEVPEELYDAVAEVLNFVYGLK 349
>gi|90422606|ref|YP_530976.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
BisB18]
gi|90104620|gb|ABD86657.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
BisB18]
Length = 358
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 123/353 (34%), Positives = 215/353 (60%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE ++KTE P+ KKI D++ +G P+SREAS+FSS++A L+ L F + ++T+
Sbjct: 1 MSEGPDKESKTEEPTEKKIRDSVEKGKIPVSREASIFSSMIALLLILSFLAVDNVRNLTA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L ++ + ++ + L + SA+ LV+P +++ + G+ + ++Q +P++
Sbjct: 61 TLARMIDDPSGIRIRTAADATEFLVAVGASAAGLVLPIVIVLAVAGVLASVLQNVPLIVF 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+S+ +G RI+ V F KS K I + ++TI L T ++ + ++
Sbjct: 121 ERIAPDASRISIAKGWGRIFGGQGRVEFAKSVFKFIAISLVVTIVLRAEEATAVNALFSD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ +++ I + L LD+ W+ W L+M+KQE+KDE +Q+ G+P
Sbjct: 181 PTAVPELILAAAMRLVSAISIATIVLVALDLLWARFHWRRDLRMTKQELKDEFRQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +SIAR R R +M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA
Sbjct: 241 IVKSRLRSIARDRARKRMLAAVPRATLVIANPTHYAIALKYQHGEDAAPTVLAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA +N+P+ E+ LARS++ I+ IP F++ VA++IY ++ ++
Sbjct: 301 LKIREIAERNNVPVVEDRMLARSMYDAAEIDRVIPAEFFRPVAEIIYFLHSRR 353
>gi|254459117|ref|ZP_05072540.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
1]
gi|207084388|gb|EDZ61677.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
1]
Length = 349
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 170/352 (48%), Gaps = 6/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KKIEDA EGN P S++ S ++ ++ L F +
Sbjct: 1 MA---DDAEKTEEPTPKKIEDARKEGNVPKSQDTSGVITLFVAILATLMLFPYMSNHMLL 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D ++ + +++P + + G+ + L Q +
Sbjct: 58 LFKYYFSLIGTPL--DKLFMIDIAIVTIKEFLLIIMPLAIAVAISGVIAALAQFGFLFTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FK++ +G K ++S+ L+ +K K I + + +
Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSMKKLIESVKITFKSFTTLGIGFVFFFLYILELPTVALFS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++LL I ++DI Q++ LKMSKQEIKDE+K G+P
Sbjct: 176 LGEQLVWLKDKAIILAFVMLLIIFVFAMIDIVIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK + + I R +MM A +IITNPTHYA+AL+Y +++ AP +VAKG + IA
Sbjct: 236 LIKGKIRQIQMQASRKRMMAEVPNADVIITNPTHYAVALKYEESK-RAPYVVAKGMDNIA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++KIA E+N+ I + P LARSL+ V I+ IP + AVA+++ +Y
Sbjct: 295 QQIKKIARENNVHIVQNPPLARSLYADVEIDKPIPEELFAAVAEVLAYVYKM 346
>gi|58579708|ref|YP_198724.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58424302|gb|AAW73339.1| HrcU [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 423
Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 66 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 125
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 126 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 183
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I
Sbjct: 184 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 243
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++
Sbjct: 244 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 303
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 304 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 363
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + AIP ++ VA ++ +
Sbjct: 364 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 405
>gi|115523175|ref|YP_780086.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
BisA53]
gi|115517122|gb|ABJ05106.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
BisA53]
Length = 358
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 120/349 (34%), Positives = 215/349 (61%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ ++KTE P+ KK+ D++ +G P+SRE ++FSS++A L+ L F + ++T
Sbjct: 1 MSDAPEKESKTEEPTEKKVRDSVEKGQIPVSREVAIFSSMIALLLILSFLTGDKLTALTK 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ + +++ + + L+T + +S++R V+P +++ + G+ S +Q +P +
Sbjct: 61 ALAGLIDDPSGVRIKTGADAIELITAIGVSSARFVLPIVVVLSLAGLASSFLQNVPRIVA 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P R+S+ +G +RI+ V F KS K I + ++ I L ++ + +
Sbjct: 121 DRIEPKLSRISIAKGWERIFGAQGRVEFAKSVFKFIAISIVVAIVLKAEEAATVNALFGD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ T +++ I + L LD+ W+ W L+M+KQE+KDE KQ+ G+P
Sbjct: 181 PTAVPELVLTTAMQLVSAISIATIVLVALDLVWARFHWRQDLRMTKQELKDEFKQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +SIAR R R+ M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA
Sbjct: 241 IVKSRMRSIARDRARNAMLAAVPRATLVIANPTHYAIALKYQHGEDPAPTVLAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R+IA ++N+P+ E+ LAR+++ I+ IP F++ VA++IY +
Sbjct: 301 LKIREIAEQNNVPVVEDRMLARAMYDAAQIDRVIPAEFFRPVAEIIYFL 349
>gi|78776868|ref|YP_393183.1| flagellar biosynthesis protein FlhB [Sulfurimonas denitrificans DSM
1251]
gi|78497408|gb|ABB43948.1| Flagellar biosynthetic protein FlhB [Sulfurimonas denitrificans DSM
1251]
Length = 350
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 101/352 (28%), Positives = 177/352 (50%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+SKKIEDA EGN P S++AS ++ ++ L F + + S
Sbjct: 1 MA---DDAEKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPYMLSHILS 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D + ++ + +++P + + G+ + + Q +
Sbjct: 58 IFKYYFSLIGMTI--DRALMLDIAIVTIKEIFLIIMPLSIAVAIAGVIAAISQFGFLFTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P K++ +G+K ++S+ L++ +K K I + +
Sbjct: 116 KSITPDLKKLDPIKGMKNLFSMKKLIDGIKITFKSFTTLGIGFVFFFLFIMELPTVALFG 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++LL I V+DI Q++ LKMSKQEIKDE+K G+P
Sbjct: 176 FTDQMIWLRDKAIIIAFVMLLIIFIFAVIDIVIVRKQYFDGLKMSKQEIKDEMKNMDGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK + + I R +MM A A ++ITNPTHYA+A++Y + ++ AP++VAKG + IA
Sbjct: 236 LIKGKIRQIQMEASRKRMMSAVPEADVVITNPTHYAVAIKYDEQKSHAPIVVAKGMDNIA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++KIA E+ + I + P LARSL+ +V ++ IP + AVA+++ IY
Sbjct: 296 QQIKKIARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEVLAYIYKM 347
>gi|312879606|ref|ZP_07739406.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
12260]
gi|310782897|gb|EFQ23295.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
12260]
Length = 390
Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 182/347 (52%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ K+E + +K + + EG S++ +L L+ LL F V L+
Sbjct: 37 SEEKSEPATPRKRQKSREEGQVVRSQDLVASVILLLGLLMLLMFGLFTGELVVGLFQDLI 96
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A ++++ +V LT S +P L + +G + Q VL + P
Sbjct: 97 AYLPSKEIQGDRWLVLPLTRSSRVFFLSWLPLGLCCTLGALGLMVYQVGFVLTPKPLIPK 156
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ R++ EG+KR+ SI +LV +K +K +L+ I+ +L ++ ++ + +
Sbjct: 157 WNRLNPVEGMKRLISIRSLVELVKGILKALLLLLILYSALRKDLAALISTMRYPFTQGMG 216
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + L + D + ++ ++MSKQEIK+E KQ G+P++K R
Sbjct: 217 AVVDKIWSLSFKMAMMLFVLGLFDYLYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRI 276
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R + +MM +A ++ITNPTH ALAL+Y + +AP+L+AKG+ IA+K+R++
Sbjct: 277 RQRQRELAQRRMMAEVPKADVVITNPTHLALALQYDREIMEAPLLLAKGEGYIARKIREV 336
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A EH IPI + P LA++L+++V + +P FY+AVA+++ +Y K
Sbjct: 337 AEEHKIPIVQNPPLAQALYREVEVGGEVPEAFYRAVAEVLAFVYRLK 383
>gi|144900464|emb|CAM77328.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
MSR-1]
Length = 357
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 113/353 (32%), Positives = 194/353 (54%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + D KTE P+ K++ DA EGN P + EA S++ I L F +++ +
Sbjct: 1 MADEASDD-KTEEPTGKRLGDARTEGNIPQTMEAKAMMSLVLAAIMLGFLAPDMAHNIKA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ LL ++IP L+ + + S + +
Sbjct: 60 VITPYIEQVHLMEVGPDGLGELLLHLSLGVLQSMIIPFALVIFLGVVASLAQTKGFLWVP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FK+++ EG KRI+S+N L+ K +K+ ++G ++ L + + + +
Sbjct: 120 KKIAPDFKKLNPLEGYKRIFSVNQLMELGKQLIKLTVLGLLLGWVLWGSIGEIENLANLE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+IL + + ++++ L+ + L V D + +W K+KM+KQE+KDE KQ+ G+P
Sbjct: 180 LMAILEYISDKIFWMVLVTLMMVTLLAVGDYLFQRWRWMEKMKMTKQEVKDEHKQAEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + KS+ R R +MM A +A ++ITNPTHYA+AL+Y AP+LVAKG +L+A
Sbjct: 240 QVKAKIKSLRFQRARKRMMAAVPKADVVITNPTHYAVALKYDLDAMSAPILVAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++R +A EH++PI E P +AR+LF V ++ IPP YKAVA++I + K
Sbjct: 300 KRIRDLADEHDVPIVENPPVARALFAAVELDQEIPPEHYKAVAEIIGYVMRLK 352
>gi|297584054|ref|YP_003699834.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
MLS10]
gi|297142511|gb|ADH99268.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
MLS10]
Length = 359
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 170/345 (49%), Gaps = 1/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK ++ N+G S + + ++ + F + + + + +
Sbjct: 12 QEKTEKATPKKKRESRNKGQVAKSTDVNTAFILMFVFLMFFFAGPFMVDQMLTIVRFTME 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ +++ + A+ V P +L ++ G+ + +Q + VK
Sbjct: 72 EYLLMDV-TPANVQPMFIDYIFQAAVAVAPVMLASVIAGVFANYVQVGVLFAPEAVKFKL 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++++ +G KRI+SI LV F+KS +KI+LVG + I + +L
Sbjct: 131 EKINPLKGFKRIFSIRALVEFLKSMMKIVLVGGVTGIVIWLYMDDLLKIGLYAVEDAAVL 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + + L +LD + + + ++MSKQ++KDE K++ G+P+IK++ K
Sbjct: 191 IGTLIIFMGLAVGFLLIFLAILDYMYQKYDFEKNIRMSKQDVKDEYKKTEGDPLIKSKIK 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ +A ++ITNPTHYA+AL+Y +APV+VAKG + +A K+ IA
Sbjct: 251 EKQRQMAMSRMMQEVPKADVVITNPTHYAIALKYDADNMEAPVIVAKGVDYVALKLINIA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ + E LAR+L+ Q I +P +KAVA+++ +Y
Sbjct: 311 KNNEVLTAENRPLARALYAQADIGDQVPEDLFKAVAEVLAYVYRI 355
>gi|332187868|ref|ZP_08389601.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
gi|332012029|gb|EGI54101.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
Length = 375
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE KTEAP+ K+ + A +G SR+ + ++A + +L+F + + +
Sbjct: 1 MSE---GGEKTEAPTQKRRQKAREDGQILRSRDLAAALVMMAGIAWLMFAGPTLLGACKA 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + +ED L+ + + ++ I S N
Sbjct: 58 VMAASF-QFSHADVEDFEPFRPLMEAGWK-LLPSLASLFAVTIVATIASQAGLGSLQFNP 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KRI+ + KS +KI+L+G + L + L ++
Sbjct: 116 KALTPKPSKLNPASGLKRIFGMQGWTELGKSLLKIVLLGALGGYMLWTSSRATLGLAQSD 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+S + T +L+++ + + D+ Q SKLKM+KQEIKDE K+S GNP
Sbjct: 176 LNSAIGSLGGTFITILLVMGFGLVLIAGFDVPIQIFQLLSKLKMTKQEIKDEHKESEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
K ++ R + A A +I+TNPTH+A+ALRY + +++ PV+VAKG+ A
Sbjct: 236 EAKAHIRAKQREMSHRAVRAAVQEAHVILTNPTHFAVALRYERGKDEVPVVVAKGRGATA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A E P+ E P LAR+++ + Y+A+A ++ ++
Sbjct: 296 LAIRELAAELATPVLEYPQLARAVYYTSREGQEVRADLYQAIAVVLAFVF 345
>gi|197120182|ref|YP_002140609.1| flagellar biosynthesis protein FlhB [Geobacter bemidjiensis Bem]
gi|197089542|gb|ACH40813.1| flagellar biogenesis protein FlhB [Geobacter bemidjiensis Bem]
Length = 353
Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + ++ +
Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLRTMKT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + +L + + L+ + ++ P +L+ ++ GI + Q ++
Sbjct: 60 SMQEIFGGLARPEL-TYAAVHTLMIKEFGYLAIMLAPFILVGIVVGIAVEVTQGGVTVSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + +
Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIVYLVDQD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G+P
Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFMDNLKMTKQEVKDEHKNMEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + K R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A
Sbjct: 239 AIKGKMKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ A E+N+ + E LAR L+ QV IP + AVA+++ +Y K
Sbjct: 299 LQIKITARENNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351
>gi|310820310|ref|YP_003952668.1| type III secretion protein hrpy/hrcu family protein [Stigmatella
aurantiaca DW4/3-1]
gi|309393382|gb|ADO70841.1| Type III secretion protein HrpY/HrcU family protein [Stigmatella
aurantiaca DW4/3-1]
Length = 353
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 82/347 (23%), Positives = 163/347 (46%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE PS KK++DA +G S++ + L L + + + + +
Sbjct: 2 SDEKTEEPSQKKLDDARKKGQVWKSKDLTGVFVFLVGLGAVKGMWDTIVEELKTLFLFTF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+Q + + + + + L P + + +Q + ++ + P
Sbjct: 62 QYISQPEELSRATSNAMSMAVH-TVLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPK 120
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++++ +GIK I+S +V +K+ VKI + ++ + + ++ + + +L
Sbjct: 121 LEKLNPIQGIKNIFSKKTVVEMIKNLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLA 180
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V +V + L ++ DI W + ++ MSK ++K E K+S G+P K +
Sbjct: 181 VMGEMVYRVCTRVALVFLLFSIFDIWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHR 240
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + + MEA A +I+TNP H A+AL+Y + ++ AP ++AKG + A++++ I
Sbjct: 241 KQMHQEIMEGAQMEAVKDADVIVTNPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAI 300
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E ++P LA +L + V + IP Y AVA+++ +Y K
Sbjct: 301 ARESDVPTLRNVPLAHALLR-VDVGQDIPEELYDAVAEVLNFVYGLK 346
>gi|258514018|ref|YP_003190240.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
DSM 771]
gi|257777723|gb|ACV61617.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
DSM 771]
Length = 354
Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 192/353 (54%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE + +K+ A +G S + + +LA ++ + S+
Sbjct: 1 MA--QGGQEKTEKATPRKLLQARRKGQVAKSSDLNAAVLMLAVVLLFYSIKQQQLSSMYK 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA+ TQ + E ++ L+ S+ +L+ P L++ ++ + +Q V +
Sbjct: 59 YFSWYLANFTQYR-ESQVSLMQLMVSFSIYYIKLMAPVLIVVVIVALLINFMQVGLVFSS 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP KR + EG KRI+++ +LV K+ K++++G I ++ + +L A
Sbjct: 118 ESIKPQLKRANPIEGFKRIFTVRSLVELAKNIFKLLVIGGITYNLISGRFNELLLIFYAT 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P I + ++L + + +LD + +++ ++MSKQ+IKDE KQ+ G+P
Sbjct: 178 PAMIFQTVSGFILRILGWGGIVYFAMALLDYLYQRYEFQKSMRMSKQDIKDEYKQTEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K++ + + R ++ E RAT+++TNPTH+A+ALRY + + D P++ AKG + +A
Sbjct: 238 LLKSKLREMQRKMSLSRIREEMPRATVVVTNPTHFAVALRYSEGDADVPLVTAKGADYLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+MR++A E+N+P+ E+ LAR L+ +V + + IP Y++VA+++ +Y KK
Sbjct: 298 LRMREMAKEYNVPVIEQRELARLLYDRVEVGTEIPYELYQSVAEILAMVYKKK 350
>gi|149189857|ref|ZP_01868137.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148836343|gb|EDL53300.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 375
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S +KI+ A EG P ++E + L IY ++
Sbjct: 1 MSE-QSSQDKTEKASPQKIKKARQEGQIPRAKEFTTAVLFLIVAIYFYSQIGRIWEHISG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+A T++ LE+ ++ L L++P ++ ++ IGS +I +
Sbjct: 60 VFRFNMA-LTRQDLENPKQMIEQLGQSLGIIIELLLPMFMVIVIAAIGSSMILGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+++P +++ G+ R++S +LV +KS +K+ ++ ++ L N+ +L
Sbjct: 119 ANIQPKLSKLNPISGVGRMFSTRSLVELLKSSLKVTVIFALLYTYLDSNFSQLLGMQKLT 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+++ + + V+DI + + +LKM+KQE+K+E K + G P
Sbjct: 179 LSQGITMVMTILFEGLLLMGVALLIFGVIDIPYQRWEHLKQLKMTKQELKEEYKNNEGCP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ +A +A ++ITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKAVPKADVVITNPTHYAVALKYDTSLSDAPFVVAKGIDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENQVEILHSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVMQLK 351
>gi|167626135|ref|YP_001676429.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
HAW-EB4]
gi|167356157|gb|ABZ78770.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
HAW-EB4]
Length = 377
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 181/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ +KTE + +K++ A +G P S++ + + I+ C + LL + I + +
Sbjct: 1 MSNKDSGQSKTEKATPQKLKKAREQGQVPRSKDLASSALIIGCSL-LLTTTADWIAAKVA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + S T+ +L++ + L + L ++ P L+ + + + + P+ N
Sbjct: 60 AMTRINMSFTKAQLDEPGMMARHLAYSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N+ + R+ G+ R+ S+ +LV +KS +KI+L+ I+ + L +N+ ++
Sbjct: 120 NNANFKYSRIDPIAGLGRMASVKSLVELVKSILKIVLLIGIMLLFLQKNFQALMAVSQLP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + L + +T +D+ + Y + +L+MS QE+KDE KQ G P
Sbjct: 180 IDEAVTRGIEMLSLAMFYMGLGLLVITFIDVPYQYWHHHKELRMSLQEVKDEYKQQDGKP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + R + + +A +++ NP+HYA+AL+Y + DAP ++AKG + +A
Sbjct: 240 EVKAKIRQMQQRISRSRADVSVPKADVLLVNPSHYAVALKYDMNKADAPYVLAKGTDELA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR IA +++ + E P L R+++ + IP + A+A ++ + +
Sbjct: 300 LYMRDIAKRNDVEVLELPPLTRAIYYSTQVEQQIPSGLFIAIAHVLTYVMQLR 352
>gi|298528402|ref|ZP_07015806.1| type III secretion exporter [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512054|gb|EFI35956.1| type III secretion exporter [Desulfonatronospira thiodismutans
ASO3-1]
Length = 359
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 182/354 (51%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M + D KTE + K+ + A +GN P S+E S++A ++ L FF +
Sbjct: 1 MPQKDPS--KTEDATPKRRKKAREQGNVPKSQEMPKIISLIAGILALRLFFPHIRDTYME 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A +L + + L + + +++P +L+ I + +Q +
Sbjct: 59 MTEWFMDQAFHYQL-NPESLYHLAVFSIQNIASMLLPFMLIVFFVTIVAIYLQVGFLWTF 117
Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP K ++ EG+K+ + +N LV +K+ V T I +T + L
Sbjct: 118 KPLKPKMKIFNVVEGLKKKFLDLNTLVRLVKNVGIASAVATAPYIIITSEFENFLPLFYE 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P I+ + T K+ ++ ++ + + + D+ ++ + LKM+K E+KDE KQ+ GN
Sbjct: 178 DPPFIVAYILNTAFKMAMLAMIPLLIIAIADVAYTRWDYEQNLKMTKDEVKDERKQAEGN 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K Q+ +S + +M + +A ++ITNPTH A+A++Y AP+++AKG N
Sbjct: 238 PEVKKEQRKKMQSTTQQRMRQEVPKADVVITNPTHLAVAIKYDPVLAPAPMVLAKGANFR 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+K+++IA E+NIPI E LA++L+K V IP YKAVA ++ ++Y K
Sbjct: 298 AEKIKEIARENNIPIRENKPLAQALYKNVQEGETIPEDMYKAVASILAQLYKFK 351
>gi|325288792|ref|YP_004264973.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
DSM 8271]
gi|324964193|gb|ADY54972.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
DSM 8271]
Length = 355
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 173/344 (50%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + K+ ++A +G S+E + +LA + L F+ + + + +
Sbjct: 6 EKRFPATPKRKQEARKKGQVLKSQELTSSIMLLAMIGVLRFWLPSVLERFADLMKYVYSL 65
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
T+ + L+ +++ A++++ P LL + + IQ + + + P
Sbjct: 66 PTEW---SNISVASLMLNMTWQAAQILAPVLLTTVAVAVAVNYIQVGSLFSTEAIMPKLS 122
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+SL EG KR++ + + KS +K+I +G + + ++ N
Sbjct: 123 RLSLIEGAKRMFGVRAWIQLAKSLLKVIAIGYFLYAVIRDHLEMFPALQQINALQATMFL 182
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ I +++LD + + ++ L+MS +EIK+E KQ+ G+P +KN K
Sbjct: 183 GEILFELAWKIATAFLLISILDFLYQWWEYEKNLRMSHEEIKEEYKQNEGDPQLKNEMKK 242
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
R+ +MME +A ++ITNPTHYA+AL+Y + DAP +VAKGQ+ +A ++++ A
Sbjct: 243 RQRAVAMRRMMEDLKKADVVITNPTHYAVALKYDPQKFDAPYVVAKGQDQVALRIKETAR 302
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E+ I + E LAR+L+ QV I A+P YKAVA+++ +
Sbjct: 303 ENRIIMMENKPLARTLYTQVEIGQAVPAELYKAVAEVLAFVMKM 346
>gi|222824323|ref|YP_002575897.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
gi|222539544|gb|ACM64645.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
Length = 358
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 106/350 (30%), Positives = 196/350 (56%), Gaps = 4/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +D KTE P+SKKIEDA EGN P S++AS + ++ ++ +LF + S
Sbjct: 1 MAADD--QEKTEEPTSKKIEDARKEGNVPKSQDASAVAVLIVAVVVVLFTLPFMGERI-S 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+ S +L D+ + ++ + +V+P L+ M+ G+ L+Q +
Sbjct: 58 GLYRFYQSFIGIEL-DLKILQKIIIKTMIEMFIMVLPITLVIMIAGVLGNLMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F +++ G+K ++S+ ++ +K +K+ +V I + L + +
Sbjct: 117 KPITPNFNKINPLNGLKNLFSLKKIIEALKITLKVGVVFGIAFVFLLQFMQELPRVELYT 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + ++++ + LD+ +Q++ L+MSKQEIKDE KQ+ G+P
Sbjct: 177 IYPQLLWLRDKAIILAAVVIIAFLLIGFLDVLIVRYQYFKNLRMSKQEIKDEYKQTEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R + + R +M++ + A ++ITNPTHYA+ALRY ++ AP ++AKG + +A
Sbjct: 237 LVKSRIRRLQMEAARRRMVQDVASADVVITNPTHYAVALRYDSSQEAAPKVLAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+++ +AYE+N+ I+E P LAR L+K +N IPP +KAVA+++ +Y
Sbjct: 297 LRIKDMAYEYNVMIYENPPLARELYKACEVNDLIPPELFKAVAEVLSFVY 346
>gi|260574396|ref|ZP_05842400.1| type III secretion exporter [Rhodobacter sp. SW2]
gi|259023292|gb|EEW26584.1| type III secretion exporter [Rhodobacter sp. SW2]
Length = 361
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 1/349 (0%)
Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ D K PS ++++ A +G P S + S ++ L+ + + +
Sbjct: 1 MSDGEDDSAEKEHEPSQRRLDQAREKGQIPRSTDLSTAAAYGGLLLAAVALGEGSLRRIG 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
VLL + + ++ L L ++ V P LL + + QR + +
Sbjct: 61 DSAAVLLDQSDRLSALMLTGGTAPLGGLLIAIGWAVAPFFLLPALAVFLAVFAQRAFIFS 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + P R+S E K + N L F KSFVK++++ I+ + L +N +L +
Sbjct: 121 PDKLMPKLSRISPIESAKNKFGRNGLFEFAKSFVKLLVISVILGMFLMQNMDDVLGALYL 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P S V + L ++L+ + LD W + + +MS++++ DE K+S G+
Sbjct: 181 EPASATLVLLRLVVQFLFLVLIIATAIGALDYLWQRSEHLRRNRMSRKDMMDEHKESEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P K +++ ++M+ + A +I+ NPTHYA+AL++ + APV VAKG + I
Sbjct: 241 PHSKAQRRQRGYDIATNRMLADVATADVIVVNPTHYAVALKWDRAAKRAPVCVAKGVDEI 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
A ++R+ A E +P+ +P AR+L V + I P Y+AVA I
Sbjct: 301 AARIRERAAEAGVPMHRDPPTARALHASVEVGQEIRPEQYRAVAAAIRF 349
>gi|315126008|ref|YP_004068011.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
gi|315014522|gb|ADT67860.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
Length = 376
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEN + KTE P+ K+++ A +G S+E + ++ + LL+F + YS+
Sbjct: 1 MSEN-SSQEKTEQPTEKRLKKAKEDGQVARSKELNTAILLMVSIAGLLWF-ANLFYSLFV 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + + L+ ++ + P LLL + + V +
Sbjct: 59 NLMNSTMVLDHTIINNKKMMPIALSDAIMNMLSTLTPFLLLSFCAMWITGCLPGGFVFSK 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V +++ G+ +++ +LV +KS +KI L+ + LT+ + ++ + +
Sbjct: 119 KLVALKMSKLNPLTGLGKMFGKQSLVELLKSILKITLLAICLYTFLTKLWMQLMMLQNLD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L++ + + + V+D+ + Q K+KM+ QE+K+E K S G+P
Sbjct: 179 IKVAIGQGIELLFLSLMITVTLLLFIAVIDVPFQQKQIADKIKMTHQEVKEERKSSDGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IKN+ + I + K+ E A +I+TNPTHYA+A++Y + AP +VAKG + +A
Sbjct: 239 EIKNKIRQIQYQQSNRKIEERVPTADVIVTNPTHYAVAIKYSEEAAKAPYVVAKGVDEMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A +N I E P+LAR+++ ++ +P Y AVA ++ + K
Sbjct: 299 LRIREVARMNNKEIIEIPALARAIYFSTRVDQEVPNGLYSAVAYVLTYVLQLK 351
>gi|303326438|ref|ZP_07356881.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
gi|302864354|gb|EFL87285.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
Length = 359
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M ++TE + K+ EGN P S+E S+ LI L + P + +
Sbjct: 1 MFGKQQDPSRTEEATPKRRNKQRQEGNVPKSQELGKAVSLTGGLIALHLWLGPMTEEIKT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + + ++ L L++ ++++P LL + +Q +
Sbjct: 61 LFRRFLGHAWEFD-PNPQNVYTLSIDLTVELCKIILPILLFLGFLAFLAQRLQVGKLWTT 119
Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
K ++R ++ +G+K++ +S + +KS + I++ I + + Y L A
Sbjct: 120 KVFKFKWQRFNIIKGLKQMMFSPQTALRTIKSLLFSIILALIPGYLIYQEYQNFLPMYYA 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P + + K+ LL I + D+ S + +KM+K E+KDE KQ+ G+
Sbjct: 180 TPEGVAAYMLQMGLKLAYYALLPILAIAAFDVWQSRFAYKEGMKMTKDEVKDERKQAEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P+IK +Q+ + +MM+ +A +++TNPTH A+ALRY E APV++AKG + +
Sbjct: 240 PVIKGQQRRKMMEVVMKRMMQDVPKADVVVTNPTHIAVALRYNAQEAPAPVVLAKGADHL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+K++ +A EHN+PI E LAR+L+K V + +P YKAVA ++ I+ K
Sbjct: 300 AEKIKAVAREHNVPIRENVPLARALYKAVEVGDMVPEELYKAVATVLASIWKLK 353
>gi|152990384|ref|YP_001356106.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
gi|151422245|dbj|BAF69749.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
Length = 351
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 83/351 (23%), Positives = 173/351 (49%), Gaps = 6/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + KTE + ++ E A EG S++ + ++++ + L + +
Sbjct: 1 MAKDPS---KTEKATPRRREKAREEGQVAKSQDIPISATLIVVFMLFLAYIPFAYKKLYE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A + I++L+ L IP L ++ G+ S + Q +L
Sbjct: 58 LFMFIFADPLYNIPQYNYSIIYLVMEFM---GYLTIPFFLALLITGVVSNIAQIGFLLTF 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+KR++S+ L +K+ +K+I + + + + +
Sbjct: 115 KSMVPKLEKIDPIAGLKRLFSLKTLFELVKNILKLIAATIVSYFLVQFLLRDVFQYATTT 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+ +++ + + +D + ++ +KMSK E+K+E KQ GNP
Sbjct: 175 PYKDAVLLVKYTLIMILGFAILSIPIAAIDFFFRKFEFEENIKMSKHEVKEEHKQMEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + R +++M +A ++ITNP H+A+AL+Y + + AP +VAKG++ +A
Sbjct: 235 QVKSEIRKRMREMSMNRIMAEVPKADVVITNPVHFAVALKYEKEKMHAPKVVAKGKDYLA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+++IA EH +PI E P LAR++++ ++ IP YKA+A++ K++
Sbjct: 295 LKIKEIAKEHGVPIEENPPLARAIYQACDVDEYIPENLYKAIAKIFAKVFK 345
>gi|258622507|ref|ZP_05717529.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
gi|262173373|ref|ZP_06041050.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
gi|258585207|gb|EEW09934.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
gi|261890731|gb|EEY36718.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
Length = 375
Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ + +KTE S++KI+ A G P ++E + + LA ++ S+
Sbjct: 1 MNEH-SSQDKTEQASAQKIKKARQGGQVPRAKEFTTAAIFLAVVLLFYAQLDHIWQSMAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S T++ L + +V L +++P + ++ +GS ++ +
Sbjct: 60 -IFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P +++ GIKR++S +LV +KS +K++++ ++ L + +L
Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + ++ +L+MSKQE+K+E KQ+ G P
Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + +
Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351
>gi|188574349|ref|YP_001911278.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|50428352|dbj|BAD29989.1| HrcU [Xanthomonas oryzae pv. oryzae]
gi|188518801|gb|ACD56746.1| HrcU [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 359
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + AIP ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341
>gi|260779326|ref|ZP_05888218.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605490|gb|EEX31785.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 375
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S +KI+ A EG P ++E + + LA +Y S+
Sbjct: 1 MSE-QSSQDKTEKASPQKIKKARQEGQIPRAKEFTTAAIFLAVAVYFYSQLPVIWESIAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T++ L + +V L H L++P ++ + + S ++ + L
Sbjct: 60 -IFRFNMTLTKQDLANPKQMVEQLGHSLGMIITLLLPMFVVIIAVTLASTMVLGGWMFRL 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKR++S +LV +KS +K++++ ++ L + +L +
Sbjct: 119 ANVFPKLSKLNPLSGIKRMFSTRSLVELLKSTLKVLVIFGVLYAYLDNHLQPLLGMQRLS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+M+ + V+DI + + +LKM+KQE+K+E K + G P
Sbjct: 179 LEQGVVNVMQILFDGLLMMGFALLLFGVIDIPYQRWEHMKELKMTKQELKEEYKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+A++Y +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVAMKYDPALSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I A+P Y AVA ++ + K
Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYYTTAIEQAVPSQLYIAVAHILTYVMQLK 351
>gi|84621748|ref|YP_449120.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|9711589|dbj|BAB07858.1| HrcU [Xanthomonas oryzae pv. oryzae]
gi|84365688|dbj|BAE66846.1| HrcU protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 359
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIRTLMPMIIGLAYETPLDISQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + AIP ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341
>gi|42524691|ref|NP_970071.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
gi|39576901|emb|CAE78130.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
Length = 353
Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 171/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E K+E + + E+ GN ++E + +LA + +
Sbjct: 1 MAE--DNGEKSEEATDARREEFRKRGNVAHTKELASAVMLLAAAGGVYALGRFFFKEMYE 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + + + A L+ P LL + G S ++Q +
Sbjct: 59 VFQHSFGDDMVKMVRE-GNFTEAAQYCGMKAMILIAPVLLFAGIIGAASSIVQIGFLQVE 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ V P+F++V+ EG KR++S+ +V +KS +K+ V ++ L + ++ +
Sbjct: 118 DAVSPNFEKVNPVEGFKRVFSMRAVVEALKSILKMGAVAMVLYFLLRSEVTQVPYMLTYS 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I+ + V K+L + + + D + K+ M+KQE+K+E KQ G+P
Sbjct: 178 IDQIIAYIGVIVVKLLGGVGAVMLVIAGADYFYQRFDLEKKMMMTKQEVKEEHKQREGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+R + I R +MM +A ++ITNPTH A+ L+Y AP +VA G + +A
Sbjct: 238 MIKSRIRRIQREMASKRMMSEIPKADVVITNPTHIAVVLKY-TDNLPAPQIVAMGADHVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+++IA E+N+PI E LAR++FK + I IP + AVA+++ +Y +
Sbjct: 297 EKIKEIARENNVPIVENKPLARTIFKTLKIGQVIPRELFVAVAEVLSYVYRLR 349
>gi|224370771|ref|YP_002604935.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
gi|223693488|gb|ACN16771.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
Length = 357
Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%)
Query: 1 MSENDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E+ KTE SSKK+E A EG S E +LA ++ L F +
Sbjct: 1 MAEDPGGGGEKTEGASSKKLEKAREEGQVAKSTEVPSVVVLLAGVLALNAFAFFIYQRLI 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L S T L + +V LL + ++ P LL + + S + Q VL+
Sbjct: 61 LVLQDGL-SFTGIPLSNDVAVVHLLFVATQRLFIILGPLLLAVFVAALVSNIFQVGFVLS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
V P F R+ +G + +S L+ F+KS +KI ++ + + + ++
Sbjct: 120 WKAVAPKFSRIDPIKGFAQKFSSRALMEFLKSILKIAIIFGVTYMVVKSEVENIIRLYDH 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+IL + ++ I ++L +A L +D + ++ KM+KQE+KDE KQ+ G+
Sbjct: 180 GVAAILLYVLKVSLEIFIKVILVMAVLAAIDFAFQRWKFMEDQKMTKQEVKDEHKQAEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R + + + R +MM A +++TNPT A+A+RY +AP +VAKG +
Sbjct: 240 PQVKARIRQLQATAARKRMMSDVPEADVVVTNPTRLAIAIRYDGMTMNAPTIVAKGAGAV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R+IA E N+P+ E +LAR+L+K V + +P ++AVA+L+ ++Y K
Sbjct: 300 AANIRRIAEESNVPLVENKALARNLYKIVEVGQEVPTEEFQAVAELLAQVYKLK 353
>gi|188997532|ref|YP_001931783.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932599|gb|ACD67229.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 350
Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 3/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE + K+ + A EG S + S+ +S+ I L+F+ + ++
Sbjct: 7 KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLLGYFKYTFSNP 66
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
E+ ++ + VI L + I S ++Q + L + P +
Sbjct: 67 LYLISENGRMFIWFTLKILAILILPVILILFVVA---IASNVMQFGFLFTLKPLTPKLDK 123
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
+++ GIKRI+S+ L +K+ K+ + + + L +++ + ++ +Y
Sbjct: 124 LNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGSINNQIYVLS 183
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
T+ +++ + + D + +++ LKM+K E+K+E K GN ++K +
Sbjct: 184 KTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNLLVKREIRKR 243
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA+K++++A E
Sbjct: 244 MRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVLAKGQDLIAQKIKEVAKE 303
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H++ I E+P LAR+L+ I IP Y+AVA+++ +IY K
Sbjct: 304 HDVKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKFK 347
>gi|83589641|ref|YP_429650.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
39073]
gi|83572555|gb|ABC19107.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
39073]
Length = 374
Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 184/346 (53%), Gaps = 2/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + ++++ +G S + S +LAC+++L + ++ + L
Sbjct: 28 EEKTEEATPHRLQEVRQKGQVARSNDLSTAMVLLACVVFLYWRRETFYQAMADLITSTLQ 87
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
++L D ++ L + L+L L+ P L L G+ + Q V +L + P
Sbjct: 88 DGWHQQL-DGGSLMALGSQLALKVGLLLAPLLALAAAVGLAANFAQTGFVFSLEPLLPRL 146
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+ + +G++R +S L+ +KS K+++V ++ + + +L + + L
Sbjct: 147 ENLDPVKGMQRFFSRRALMELLKSLAKVVVVSLVVWQLVKGQFTQLLLTVDMGLPATLDL 206
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V +V + + L D + ++ L+M++QE+K+E+KQ G+P++++R +
Sbjct: 207 VSRMVYRVGLGTVAVFLALAAADYVFQRREYQKNLRMTRQEVKEEMKQMEGDPLVRSRLR 266
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R RH+MM A AT++ITNPTH A+ALRY + E AP +VAKG IA++++ +A
Sbjct: 267 EKQRQLARHRMMHAVPEATVVITNPTHVAVALRY-REEERAPRVVAKGAGSIAERIKAVA 325
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
HN+P+ E P +AR+L++QV + IP Y+AVA+++ +IY +
Sbjct: 326 RRHNVPVVENPPVARALYRQVELGQEIPVALYQAVAEILARIYKLR 371
>gi|182679720|ref|YP_001833866.1| flagellar biosynthesis protein FlhB [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635603|gb|ACB96377.1| flagellar biosynthetic protein FlhB [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 360
Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats.
Identities = 132/353 (37%), Positives = 210/353 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D++TE P++KK++DA+ +GN PISRE +F+S+L+ LI F + + +
Sbjct: 1 MAEKPDQDSQTEEPTAKKMDDAIEQGNLPISREMIIFASMLSLLIVNAFILRNSLADIVT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + ++ Q L + V L + ++P +L FM+ GI + + Q L L
Sbjct: 61 LLKYVFNNSDQIPLRNQLDAVNLFQLILTETGPRLVPIILPFMIAGIAANIGQSKLRLIL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +SL G K+++ NL F+K+ +K+ V ++ + L N +++ + +
Sbjct: 121 ERIQPDFGHLSLISGWKKLFGQKNLAEFLKNVIKLSAVALLLFMVLKGNQDKLINAMFLD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +I ++L +I + L D+ W +QW L+MSKQEIKDE+KQ G+P
Sbjct: 181 PSAIPELILSLSMRLLSVICIVTIVLATADLLWVKNQWRRDLRMSKQEIKDELKQMEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R +S+A RIR M+ +AT++I NPTH+A+ALRY++ E PV+VAKG +LIA
Sbjct: 241 LIKARLRSVALDRIRKSMIADVPKATVVIANPTHFAVALRYVREEGGTPVVVAKGTDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA HNIPI E+ LARSL V +N AIP FY+A+A++I+ + KK
Sbjct: 301 LKIREIAEAHNIPIVEDRPLARSLHASVEVNQAIPAEFYRAIAEIIHYLNTKK 353
>gi|22127347|ref|NP_670770.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
gi|45442777|ref|NP_994316.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
Microtus str. 91001]
gi|108809078|ref|YP_652994.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
gi|108810729|ref|YP_646496.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
gi|145597798|ref|YP_001161874.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
gi|150260268|ref|ZP_01916996.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162420905|ref|YP_001604864.1| flagellar biosynthesis protein FlhB [Yersinia pestis Angola]
gi|165925101|ref|ZP_02220933.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939028|ref|ZP_02227580.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009039|ref|ZP_02229937.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212135|ref|ZP_02238170.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167398548|ref|ZP_02304072.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167418875|ref|ZP_02310628.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425116|ref|ZP_02316869.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466360|ref|ZP_02331064.1| flagellar biosynthetic protein FlhB [Yersinia pestis FV-1]
gi|218927893|ref|YP_002345768.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
gi|229837389|ref|ZP_04457552.1| lateral flagellar export and assembly protein [Yersinia pestis
Pestoides A]
gi|229840602|ref|ZP_04460761.1| lateral flagellar export and assembly protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842847|ref|ZP_04462999.1| lateral flagellar export and assembly protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229900926|ref|ZP_04516050.1| lateral flagellar export and assembly protein [Yersinia pestis
Nepal516]
gi|294502771|ref|YP_003566833.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|21960430|gb|AAM87021.1|AE013950_6 putative flagellar biosynthetic protein [Yersinia pestis KIM 10]
gi|45437643|gb|AAS63193.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Microtus str. 91001]
gi|108774377|gb|ABG16896.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|108780991|gb|ABG15049.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|115346504|emb|CAL19380.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|145209494|gb|ABP38901.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|149289676|gb|EDM39753.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162353720|gb|ABX87668.1| flagellar biosynthetic protein FlhB [Yersinia pestis Angola]
gi|165912984|gb|EDR31609.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923301|gb|EDR40452.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992378|gb|EDR44679.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206881|gb|EDR51361.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962869|gb|EDR58890.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051052|gb|EDR62460.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055879|gb|EDR65660.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229682265|gb|EEO78357.1| lateral flagellar export and assembly protein [Yersinia pestis
Nepal516]
gi|229690114|gb|EEO82171.1| lateral flagellar export and assembly protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696968|gb|EEO87015.1| lateral flagellar export and assembly protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229705512|gb|EEO91522.1| lateral flagellar export and assembly protein [Yersinia pestis
Pestoides A]
gi|262360803|gb|ACY57524.1| flagellar biosynthesis protein [Yersinia pestis D106004]
gi|262364748|gb|ACY61305.1| flagellar biosynthesis protein [Yersinia pestis D182038]
gi|294353230|gb|ADE63571.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|320016730|gb|ADW00302.1| lateral flagellar export and assembly protein [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 377
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 177/350 (50%), Gaps = 3/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F ++ S
Sbjct: 2 SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFLPY-YKALVSQSF 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
V +A + + + FLL +L + A L L+ +F + + LI +
Sbjct: 61 VSVAQLASQLDDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTPVKL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P K++S GIKRI+S +N +K K +V + + + + +L +
Sbjct: 119 IPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEE 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ F +L+ + + +DI S+H + K+KM+KQE+K E K + GNP IK
Sbjct: 179 AITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA +
Sbjct: 239 SRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYI 298
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R IA +H I I E P LAR+++ +N IP Y+A+AQ++ + K
Sbjct: 299 RSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348
>gi|56964016|ref|YP_175747.1| flagellar biosynthesis protein FlhB [Bacillus clausii KSM-K16]
gi|56910259|dbj|BAD64786.1| flagellar biosynthetic protein FlhB [Bacillus clausii KSM-K16]
Length = 362
Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats.
Identities = 87/346 (25%), Positives = 173/346 (50%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE + KK +D +G P S++ + + A + L F P +++ ++ +
Sbjct: 13 EEKTEKATPKKRQDTRKKGQVPKSQDVNTAFMLFAAFLLLSLFAGPRLFAALKEMMADVF 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+I L L++ +P + L ++ G + +Q + +K
Sbjct: 73 QRFLSLPLTAENIAALFNELTIEMGMAALPIMALTVLAGAFASFVQVGSLFTPEPMKLKL 132
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ +G KRI+S LV KS +KI+ +G + + N +L +
Sbjct: 133 EKLDPIKGAKRIFSTRALVELGKSMLKIVFIGAAVAFVIYANIGDVLLLSQKSVEVGAAS 192
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + + + L + D + + +++MSK++I+DE K G+P I+ R+K
Sbjct: 193 IGHLTVTMGLFAAVLLMVLAIPDYLYQRYDHEKQIRMSKKDIRDEHKTMEGDPKIRARRK 252
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+++M+ +A ++ITNPTHYA+ALRY Q + DAP++VAKG + +A++++ +A
Sbjct: 253 QRQLEMSMNRIMQEVPKADVVITNPTHYAVALRYDQEQADAPIVVAKGVDYMAERIKTVA 312
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+H+IP+ E +LAR+++ V + I ++AVA+++ +Y K
Sbjct: 313 KKHDIPLVENVALARAMYASVELMQPIHEDMFQAVAEVLAYVYRLK 358
>gi|171058301|ref|YP_001790650.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
gi|170775746|gb|ACB33885.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
Length = 385
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 86/351 (24%), Positives = 169/351 (48%), Gaps = 3/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ +K P+ ++++ A +G SR+ + F+ + A L L+ F +P +
Sbjct: 1 MA--DSAQDKHLPPTERRLQKAREDGQVARSRDLAHFAVVAAGL-ALVMFAAPSLTQWLR 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DL R + + L+ L A L + ++ + + + ++ V
Sbjct: 58 DLMATGLRFDVRMVTSPQMMGERLSQLMYPALALCLGLGVVTGLVAMAAAVVSGGWVWTF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+ RI S + + +K+ + +++ ++ L + S
Sbjct: 118 KPLMPDFSKLNPLTGLGRIVSKAQIGDMLKACLLALILASVGAAYLWAHLNDFALTQSMP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + L ++++ +A ++D+ ++LKMS Q++K+E KQ GN
Sbjct: 178 LPAAFIAATDRISTGLWLLMIVLAASAMVDVPLQRFMHRNRLKMSHQDMKEEFKQQEGNQ 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K R R +M+ A A +++ NPTHYA+AL+Y AP +VA G +L+A
Sbjct: 238 EVKGKMKQRMREGSRRRMLAAVPEADLVVMNPTHYAVALKYDDASMGAPRIVAMGADLLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+R +A E +P+ + P LAR+L+ ++ IP Y AVAQ++ ++
Sbjct: 298 LKIRDVAKESKVPVLQSPPLARALYAHGELDREIPLALYSAVAQVLAHVFQ 348
>gi|254292632|ref|YP_003058655.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
gi|254041163|gb|ACT57958.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
Length = 354
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 180/351 (51%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ KTE P+ K+++DA +G+ S++ ++ L L+ P S+
Sbjct: 1 MAEDQDDSQKTEEPTQKRLDDARKKGDIAKSQDVPVWFI-LLAGAALIAGAQPLASSIGG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +LL +L L+T + + + ++F I +++Q +P+
Sbjct: 60 PLTMLLDHPHDFQL-SGGGAQRLMTAILGELLGPMAIVFSIIIVFAISGHVVQHMPLWTA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++S G+KR++ +N K+ +K+I + ++ + ++ +
Sbjct: 119 EKMKPKLSKLSPIGGLKRMFGPQGWMNLFKAILKLIAATVAVAFAVWPSRHELIKVGEMD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ ++ + L+ + + +D + K++MS+++IK E KQS G+P
Sbjct: 179 ISALPLMIQDKASRLFLAALIVVGFIAAIDYVFQKQSHAKKMRMSREDIKQENKQSDGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K + ++ R R + +MM A AT+++TNPTHY++AL++ + AP+ VAKG + +A
Sbjct: 239 MVKAKLAALRRQRSQGRMMAAVPEATVVVTNPTHYSIALKFDPEVDAAPICVAKGVDEVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++R+IA E ++P+ E P LAR+LF + +P ++AVA++I +
Sbjct: 299 LRIREIAKESDVPLVESPPLARALFATAELEQVVPREHFEAVAKVISFVMR 349
>gi|54307250|ref|YP_128270.1| FlhB flagellar biosynthetic protein [Photobacterium profundum SS9]
gi|46911670|emb|CAG18468.1| Hypothetical FlhB flagellar biosynthetic protein [Photobacterium
profundum SS9]
Length = 375
Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSEN + +KTE PS +K+ A EGN P S+E L + LL FS + +
Sbjct: 1 MSEN-SSQDKTEQPSQQKLRKAREEGNLPRSKELVTALMTLGAAL-LLSAFSSDLAHMFD 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ L + ++ + ++ L+ S + P L ++ I + +I+ +++
Sbjct: 59 EVATLNLALPKKAAFEPEFMLKHLSFSLTSMIFTISPIFGLLLLVTILANIIRGGWNISV 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+P +++ GIKR++S +LV +KS +K+ L+G + L+ + ++
Sbjct: 119 TAAQPKLSKLNPLSGIKRMFSTKSLVELVKSILKVSLIGGTLYWLLSNHLTQIIALQRLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L L + + VL++ ++ + +LKM+KQE+K+E K S G P
Sbjct: 179 MTEAILQTVDILWQGLFSFGLALLLIAVLELPYAGWDYTKQLKMTKQEVKEEHKNSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + + +M + +A ++ITNPTHYA+AL+Y + AP ++AKG + +A
Sbjct: 239 EVKAKIRQLQQQMSQRQMHKTVPQADVVITNPTHYAIALKYDLDKASAPFVLAKGTDQMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+MRKIA HN PI E P+L R+++ IP Y AVA ++ ++ +
Sbjct: 299 LEMRKIARHHNCPIVEIPALTRAVYYSTNEWQEIPAPLYVAVAHILTFVFQME 351
>gi|195953033|ref|YP_002121323.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
gi|195932645|gb|ACG57345.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
Length = 353
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 186/353 (52%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +NKTE + + +EGN S+E +L L FF I+ + S
Sbjct: 1 MA----SENKTEKATPYRRGKLKSEGNVAKSQEVVSALLMLVSTGAL-FFIGYKIFILFS 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DL + + S L + P +L ++ + Y++Q +
Sbjct: 56 DLILDGSLRIDDPSFTPSDATKFLGLSFKKLLSDITPLFILAVLIVVFGYILQFGFIFTF 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P+F +++ +G+K ++S+N L +K+ +K++L+ L ++ T++ +
Sbjct: 116 KPLEPNFSKLNPVDGLKNLFSLNALFELVKNSLKVMLLLIASFFILYFSFHTLVFSSYMS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L + K+LI I + L LD + + ++KMSKQE+KDE KQ GN
Sbjct: 176 PSKGLSEIARLIFKLLISIGIIGLMLAGLDFAYKKFDYEKRIKMSKQEVKDEFKQFEGNI 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R +MM+ +A+++ITNPTH+A+ALRYI ++ AP++VAKGQ+ +A
Sbjct: 236 EVKAKIRRRMMELSRSRMMQEVPKASVVITNPTHFAVALRYIPKQDRAPIVVAKGQDYMA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
KK+ +IA +++P+ +P LAR+L+K V I IPP FYKAVA++I I +K
Sbjct: 296 KKIIEIAELNDVPVVRKPELARALYKAVDIEEEIPPEFYKAVAEIIAYIVKRK 348
>gi|258624670|ref|ZP_05719605.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
gi|258583062|gb|EEW07876.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
Length = 375
Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+ + +KTE S++KI+ A G P +E + + LA ++ S+
Sbjct: 1 MNEH-SSQDKTEQASAQKIKKARQGGQVPRVKEFTTAAIFLAVVLLFYAQLDHIWQSMAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S T++ L + +V L +++P + ++ +GS ++ +
Sbjct: 60 -IFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P +++ GIKR++S +LV +KS +K++++ ++ L + +L
Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + ++ +L+MSKQE+K+E KQ+ G P
Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + +
Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351
>gi|153947127|ref|YP_001399615.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
31758]
gi|152958622|gb|ABS46083.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
31758]
Length = 377
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 177/350 (50%), Gaps = 3/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F + S
Sbjct: 2 SNSSGEKSEKPTTGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFLPY-YKELISQSF 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
V ++ + + + FLL +L + A L L+ +F + + LI +
Sbjct: 61 VSVSQLASQLNDQGALEQFLLANLFIFAKFLA--TLVPIPLFSMLATLIPGGWNFTPVKL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P K++S GIKRI+S +N +K K +V + + + + +L +
Sbjct: 119 IPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEE 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ F +L+ + + ++DI S+H + K+KM+KQE+K E K + GNP IK
Sbjct: 179 AITQGFAQYHHILLYFIAIVVVFAIIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA +
Sbjct: 239 SRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYI 298
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R IA +H I I E P LAR+++ +N IP Y+A+AQ++ + K
Sbjct: 299 RSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348
>gi|27381988|ref|NP_773517.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
110]
gi|27355158|dbj|BAC52142.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 124/349 (35%), Positives = 208/349 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTE P+ KK+ D+L +G P+SREAS+F+S+ A ++ +F G+ +T
Sbjct: 1 MAETTDQESKTEEPTEKKVRDSLEQGKIPVSREASIFASMAALMVIQMFLIGQGVQQLTP 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL L + LLT + L A R ++P L++ ++FG+ S L+Q P L L
Sbjct: 61 TLKSLLDDPEGFPLATGADAQNLLTVVGLEALRFLVPLLVVLLVFGLASSLLQNAPNLVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+S G R++ LV F KS K+ V ++ L + + + +
Sbjct: 121 QRIMPDLSRISPVSGWNRLFGTQGLVEFAKSLFKLASVTVVVAFVLRSSEAKAFEAMYTD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ +++ I + L +D+ W+ W +L+M++QEIKDE KQ+ G+P
Sbjct: 181 PVALPEMILNIAMRIVSAICIATIVLVAIDLAWARFHWRRELRMTRQEIKDEHKQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R +S+AR R R +M+ + SRAT++I NPTH+A+ALRY + EN AP++VAKG ++IA
Sbjct: 241 LVKARLRSLARDRSRQRMIASASRATLVIANPTHFAIALRYNREENPAPLVVAKGMDVIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R++A ++ IP+ E LAR+L++ V ++ IP F++ VA++IY +
Sbjct: 301 LKIREVAEKNRIPVIENKVLARALYEAVQVDQVIPAEFFRPVAEIIYFL 349
>gi|166714026|ref|ZP_02245233.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|111146902|gb|AAX40642.2| HrcU [Xanthomonas oryzae pv. oryzicola]
Length = 357
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 62 DFLENTR--DATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K +L+G ++ + + ++ P I
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSILFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E +A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + AIP ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341
>gi|308050045|ref|YP_003913611.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
gi|307632235|gb|ADN76537.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
Length = 374
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 172/350 (49%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ + +KTE + ++I+ A +G P S++ + + + C + LL L
Sbjct: 2 SQSAADKTEKATPQQIKKAREKGQVPRSKDLATAALFIGCALMLLASADWFARGTADLLR 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ S T+ L +V + ++ L+ P LL + + + + P+L+L +
Sbjct: 62 YNM-SLTREDLMAPDVMVRHVGASLVAMINLLSPLFLLIAVLALVAGALPGGPLLSLKNA 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ R+ GIKR++S+ +LV +KS +K+ L+ + L +L
Sbjct: 121 EFKGSRIDPIAGIKRMFSMKSLVELIKSILKVSLILGTLYFLLRGRLEGLLGLYRMPLDQ 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + ++ + + + + ++D+ W + +LKM++Q++KDE KQ G P +K
Sbjct: 181 AVAEGVSFLAFGILTLGVVLLFIALIDVPWQIYDHQKELKMTRQQVKDEHKQMEGKPEVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + I + R + A +A +++TNP HYA+AL+Y DAP ++AKG + +A M
Sbjct: 241 ARIRQIQQKMARSRAETAIPKADVLLTNPQHYAIALKYEPDRADAPFVLAKGTDELALHM 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A H + I E P LAR+++ ++ +P Y A+AQ++ + K
Sbjct: 301 RQLARRHGVEIIEAPPLARAVYHSTQVDQMVPQALYVAIAQVLSYVLQLK 350
>gi|163789632|ref|ZP_02184070.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
gi|159875164|gb|EDP69230.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
Length = 355
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 173/353 (49%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE S KK+ DA +G P S + + + + ++ F + + +
Sbjct: 1 MAEKDG---KTEKASPKKLRDARKKGEIPKSPDLTSAVTFIVFILSATFLGNYILKNSLL 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + + + L L P L + + S ++Q + +
Sbjct: 58 YLQNYLTAGFSVDGLE-NDLADIGMKAILFTLVLAGPFLAIAFVAAFISSIVQTGFLFSA 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ G K ++S L +K+ K+ LV + +L + + +++ S
Sbjct: 117 EPIKFKLSKINPISGFKNMFSKKTLFTLVKNVAKLTLVFWMAYKTLETSIYLIINSSSIG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I + V ++ + + + L ++D + + L+MSKQEIKDE K+S G+P
Sbjct: 177 TEKIFFLMSDLVMELGTQLGVLLLILGLVDYIYQVYDHRKNLRMSKQEIKDEYKESEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ R + + AT +ITNPTH A+A+RY + +++ P++VAKG + A
Sbjct: 237 QIKSQRRQRYRQLTKG-ALREVETATAVITNPTHLAIAIRYEKGKDEVPIIVAKGADHQA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y +
Sbjct: 296 AKIRERAKAFDVPIIENKPVARAMYKSVEIGQPVPIDLYQAIAEILALVYQME 348
>gi|169831895|ref|YP_001717877.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
audaxviator MP104C]
gi|169638739|gb|ACA60245.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
audaxviator MP104C]
Length = 359
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 175/354 (49%), Gaps = 2/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E D+ KTE P+ +++++A +G S + + ++ A L+ I +
Sbjct: 1 MAETRDSGQLKTEQPTPRRLQEARRKGQVAKSLDLTGAVTLAALLLLFFVGLEWFIIRLQ 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
V L + T L ++ +L+ V+P + + + Q +
Sbjct: 61 RLFLVYLQNFTSYSL-TAENVNYLVLQSLALLGGAVLPAVAVAFFVTVLVSFAQVGFIFA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + +R++ +G KRI+S L F K+ +KI VG + L +L
Sbjct: 120 PSVLAVKLERLNPVQGFKRIFSSRGLFEFAKAILKICFVGILCFWVLYARVGDLLVLSVT 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P LY + V + VLD+ + + + L M++ E++DE +Q+ G+
Sbjct: 180 SPGQGLYLLHNVLLTVAAAAAGAYLLIAVLDLVYQRYAHHKSLMMTRFEVRDEYRQTEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K+ + R +++ + RAT+++TNP H A+ALRY + E DAP++ AKG +
Sbjct: 240 PHLKSWLRKRQREISMNRIKDEVPRATVVVTNPIHVAVALRYREGEMDAPLVTAKGAGYL 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A++++++A +H +P+ E LA+ L+++VP+ ++P Y+AVA+++ IY K
Sbjct: 300 AERIKELAAQHKVPVVENRELAQYLYRRVPVGESVPVAVYQAVAEILAMIYRLK 353
>gi|124268261|ref|YP_001022265.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
gi|124261036|gb|ABM96030.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
Length = 387
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ ++ S +K++ A +G P SR+ F+++ A + L +T
Sbjct: 1 MAD-QGAQDRNLPASERKLKKAREDGQVPRSRDLGHFAAVAAGIALLAAMAPTATGWMTR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L L + + L L + + ++P + ++ + S L L
Sbjct: 60 LLQSGLR-FDAGTLNGTASMSERLAELGVQFAWAMLPIGAVMVLAALASSLTVGGWNFTL 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+ R+ S + LV+ ++S V +++G + L++N F ++
Sbjct: 119 KAIEPKFSKLNPLTGLPRMLSADRLVDTVRSCVLALVIGLVGAFYLSQNVFQFTSTLTLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A V L+ +LL +A ++D+ Q +LKMS QE+K E K++ GN
Sbjct: 179 LPTALAQAGNDVLYGLMFLLLALAVFALIDVPLQRFQHAKRLKMSHQEMKQEHKENEGNV 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K+ R +M+ A +A +++ NPTHYA+AL+Y + AP +VAKG +L+A
Sbjct: 239 EVKAKVKARMREMANRRMLAAVPKADLVVMNPTHYAVALKYEEGRGGAPRVVAKGADLMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R +A + +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y +
Sbjct: 299 MRIRDLAKDSKVPVLQAPVLARALYAHAELDREIPIALYTAVAQVLAYVYQLR 351
>gi|262167479|ref|ZP_06035185.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
gi|262024051|gb|EEY42746.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
Length = 359
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%)
Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
+ A +G S+E + S ++ + L++F + + L ++ ++ D+
Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60
Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
+ ++ ++ ++ L + + + P +++ G+KR+
Sbjct: 61 LFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
+ + + V +KS +K++LV + + + + ++HA + +++I
Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180
Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259
+ + +DI + Q +LKM+KQE+KDE K + G P +K R + + R + +MM
Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240
Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P
Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300
Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334
>gi|218288313|ref|ZP_03492612.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
acidocaldarius LAA1]
gi|258511391|ref|YP_003184825.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218241672|gb|EED08845.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
acidocaldarius LAA1]
gi|257478117|gb|ACV58436.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 361
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 182/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+TE + ++ ++A EG S E + + A L+ L + + L
Sbjct: 12 GERTERATPRRRQEARKEGRVARSPELTSAVAFAAVLVALRILGPAVWGEWENLIQRDLG 71
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ K + + L+ ++A+R+++P + + G+ + ++Q P+ + P F
Sbjct: 72 -GSALKSWTVEGVRALMATQVMAAARIMLPIAAVAAVIGLAAAVMQVRPLFVPQLLLPDF 130
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R+S G +RI S+ + +KS +K+ V + SL M++ +A ++
Sbjct: 131 QRISPATGWRRIASLQGALEALKSLLKLAAVVGVAYTSLASLAHQMINLSAAELDAVPGI 190
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
V + I + + + +D + + L+MSKQE+KDE+K++ GNP++K+ +
Sbjct: 191 LGRAVFNLAIRVACAMVVIAAIDYVYQRYSLERSLRMSKQELKDELKETEGNPLVKSAVR 250
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
AR +MM+ ++A ++ITNPTHYA+AL Y +AP +VAKG + +A+++R+ A
Sbjct: 251 RRARQIASRRMMQNVAKADVVITNPTHYAVALAYQSDTMNAPQVVAKGADFVAQEIRRRA 310
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EH++P+ E P LA++L++ V I IPP Y+AVA+++ +Y +
Sbjct: 311 EEHDVPLVENPPLAQALYRTVDIGQEIPPDLYQAVAEVLAYVYRMR 356
>gi|212702654|ref|ZP_03310782.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
gi|212673926|gb|EEB34409.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
Length = 347
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 175/347 (50%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ K++ D+ +G S++ +++A +YLL S + ++ + +
Sbjct: 2 SSEKTEQPTPKRLRDSREKGQVAKSQDVPSALTVMAVAVYLLAMSSDMLNTMQTMGEAPM 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ E + V T L A R+ +P + + M+ + + L+Q + ++ P
Sbjct: 62 LLMDRPFEEALPLAV---TSTLLCALRVALPLIGMVMVVALCANLMQVGVLFSVQAAMPK 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ +S+ + K+++S+ NLV F+K+ +K++++G + + ++ + + +
Sbjct: 119 LENLSMNKWFKQVFSLKNLVEFLKNIIKVLILGISVYVIFSDYMPQLFRIPQGDIGDMWR 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++++ + D + Q+ + MSK+E+K E K+S G+P+IK ++
Sbjct: 179 LLGSVCGDLVLVSAGVFCVIAAADWCFQRWQFNKQHMMSKEEVKREFKESEGDPLIKGKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + I + +A +++TNPTH+A+AL Y + PV++AKGQ ++A++M +
Sbjct: 239 KQLHQEMIAQNQIANVRKAKVLVTNPTHFAVALDYEKDRTPLPVILAKGQGVLAQRMIET 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E IPI LARSL++Q N+ IP VA+++ + +
Sbjct: 299 AREEGIPIMRNVPLARSLYEQGTENAYIPQDLIGPVAEVLRWVQSLR 345
>gi|32490783|ref|NP_871037.1| hypothetical protein WGLp034 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25165989|dbj|BAC24180.1| flhB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 385
Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D K E P+ +++ A ++GN P SRE + FS ++ I + F + + +
Sbjct: 1 MSNKDE-LEKQEDPTPNRLKKARSKGNIPRSRELTSFSILIFGWILIWFTGNNLLDKIIV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L L + E I++I+ + +S ++ P + + M+ I S + V +
Sbjct: 60 ELKKNL-NFKLYLYEHINYILVNIYLISKKFFFIIFPIIFIIMIITIISSGLLGGWVFSK 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R++ + I RI+S N + K+ K + L F + D N
Sbjct: 119 KSLNIDFSRLNPYKNISRIFSKNVFIEMAKTLFKFFFMLFSCIFYLWHTRFQISDLSDNN 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + K + +I+L + D + + L+MSK+E++DE K++ GNP
Sbjct: 179 YSNAIKNCILIISKCVFVIILSSIPIVFFDSIFQLFTFKKNLRMSKKEVQDENKENEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + R +MM+ ++ +II NPT+YA+ L+Y APVL+AKG IA
Sbjct: 239 QLKHYIRKKQRHIYNMRMMQNVEKSDVIIVNPTNYAVGLKYE-KNMKAPVLLAKGTGNIA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++ A E IPI P LAR+++K I IP Y++VA+++ +Y+ K
Sbjct: 298 IKIKEKAQEKFIPIIAVPPLARAIYKYCNIGEYIPIELYESVAEILTWVYNLK 350
>gi|313681570|ref|YP_004059308.1| flagellar biosynthetic protein flhb [Sulfuricurvum kujiense DSM
16994]
gi|313154430|gb|ADR33108.1| flagellar biosynthetic protein FlhB [Sulfuricurvum kujiense DSM
16994]
Length = 355
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 169/352 (48%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P++KK+EDA EGN P S++ + ++ +L F+ +
Sbjct: 1 MA---DDQEKTEEPTAKKLEDARAEGNVPKSQDVVGVVVLFVSILAVLMMFTFIADRMLH 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ Q D +V L + +P ++ + G+ + Q
Sbjct: 58 LSQYYFSLMRQPL--DRELMVDLAVVTMKEFLIMALPVSIIVAVAGVFGTVAQIGFNFTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F ++ +G ++++ + +K +K I + +
Sbjct: 116 KPLTPNFSKLDPIKGFANLFTLQKGLESIKITLKSFTALGIGFLYFWYFVEELPTVALFT 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++LL I V+D+ ++ KLKMS QEIKDE+K G+P
Sbjct: 176 LQDQMGWLRDKAIVLASVMLLIIFVYAVIDLFLVRKHYFDKLKMSLQEIKDEMKNMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + I R +MM + A ++ITNPTHYA+A+ Y + +++APV+VAKG + +A
Sbjct: 236 HIKAKIRQIQMQAARKRMMTSVPTADVVITNPTHYAVAIVYDENKHNAPVVVAKGVDNMA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++K+A E+ + I + P LARSL+K+V I+ IP + + AVA+++ +Y
Sbjct: 296 IQIKKVARENGVHIVQNPPLARSLYKEVDIDHPIPDMLFAAVAEVLAYVYKM 347
>gi|332527145|ref|ZP_08403222.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
gi|332111573|gb|EGJ11555.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
Length = 386
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 169/353 (47%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D ++ S +KI + +G S++ +++ A L L+ F +
Sbjct: 1 MA--DDAQDRRLPASQRKISKSREDGQVARSQDLGHLATLGAGLALLIVFAPRLTDWLRR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + ++ ++ L+ + +V+P + + S ++
Sbjct: 59 VLETGLR-FDAQAMDRPGTMLERLSASGVDMLVVVLPLGAVVAVVAAASAVLAGGWNWTF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+ ++ LVN +K + +++G I + L ++
Sbjct: 118 KPMQPKFSKLNPITGLGNLFKGQQLVNTLKICLLALILGAIGMLYLHAQLAEFTSLVAMP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ ++++LL + ++D+ +L+MS +E+K E K+S GNP
Sbjct: 178 LPTAMAETGSLLQGGMVLLLLALTLFALVDVPLQRFMLLRRLRMSFEEVKQEHKESEGNP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K+ R R KMM A A +++ NPTH+A+AL+Y + AP +VAKG +L+A
Sbjct: 238 EVKGKIKAKMREMARRKMMAAVPSADLVVMNPTHFAVALKYDEATMAAPRVVAKGADLLA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R A N+P+ E P LAR+L++ I+ IP + AVAQ++ +Y +
Sbjct: 298 FRIRDAAKAANVPVLEAPPLARALYRHAEIDQEIPAALFGAVAQVLAWVYQLR 350
>gi|254228807|ref|ZP_04922230.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
gi|262396474|ref|YP_003288327.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
gi|151938754|gb|EDN57589.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
gi|262340068|gb|ACY53862.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
Length = 375
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +KTE S +K++ A EG P ++E + LA +Y + S++
Sbjct: 1 MSD-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQLNSIWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ T+ LE+ +V L +++P + ++ GS L+ +
Sbjct: 60 IFRYNMM-LTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKRI+S ++V +KS K+ ++ I+ L + +L +
Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVVDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|327484648|gb|AEA79055.1| Flagellar biosynthesis protein FlhB [Vibrio cholerae LMA3894-4]
Length = 359
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%)
Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
+ A +G S+E + S ++ + L++F + + L ++ ++ D+
Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60
Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
+ ++ ++ ++ L + + + P +++ G+KR+
Sbjct: 61 LFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
+ + + V +KS +K++LV + + + + ++HA + +++I
Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180
Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259
+ + +DI + Q +LKM+KQE+KDE K + G P +K R + + R + +MM
Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240
Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P
Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300
Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334
>gi|51246526|ref|YP_066410.1| flagellar biosynthesis protein FlhB [Desulfotalea psychrophila
LSv54]
gi|50877563|emb|CAG37403.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea
psychrophila LSv54]
Length = 355
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 3/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E +TE SSK+ ED +G S+E + L++ F+ +
Sbjct: 1 MAEEAPTGGERTEDASSKRREDFRKKGQVAQSKEVQTAALFTLLLLFWSFYIGIFGRKLL 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ + S S + L + + ++ P LL ++ GI S Q +
Sbjct: 61 ILIQSIWQSLESFS-PTPSQTMQLALFVIKECAIILAPLFLLVVIVGIASSFFQIGWLFT 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P F +++ G R +S + + +KS K+ L+G + ++ E++ L
Sbjct: 120 TKPLSPDFSKMNPIAGFGRFFSKKSFIEVIKSLSKVTLIGWLAFSTIIEHFNEALVQTDT 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P + L T ++ + + L +D + + K+KM+KQE K+E K+S G+
Sbjct: 180 SPMATLVFIGVTASLIVAKVCAILILLAFIDFLYVKWEMEEKMKMTKQEQKEEFKESEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK++ ++I + R +MM A +IITNPTH ++ALRY ++ AP++VAKG + +
Sbjct: 240 PHIKSQIRAIQQEMARKRMMADVPGADVIITNPTHISIALRYRAGQDQAPIIVAKGVDFV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+IA E++IPI E P +AR L K + I ++P + VA+++ +Y K
Sbjct: 300 AMKIREIARENSIPIIENPPVARMLHK-IEIGGSVPEEMFAVVAEILAHVYSLK 352
>gi|153831633|ref|ZP_01984300.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
gi|148872143|gb|EDL70960.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
Length = 375
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S +K++ A EG P ++E + LA ++ + S++
Sbjct: 1 MSE-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQLNSIWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ LE +V L +++P + ++ GS ++ +
Sbjct: 60 VFRYNM-TLTKADLESPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKRI+S +LV +KS K++++ I+ L + +L +
Sbjct: 119 ANVMPKLSKLNPISGIKRIFSTRSLVELVKSTFKVLVIFGILYGYLDNHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + VLDI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|149191144|ref|ZP_01869402.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148834982|gb|EDL51961.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 382
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 90/356 (25%), Positives = 180/356 (50%), Gaps = 7/356 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+ +K+E PS K+ A EG P ++E ++++ + Y + I +
Sbjct: 1 MSEHQDSGDKSEQPSQHKLSKARREGQVPRAKEFVSSVTLISVVAYYVL----NIDMIKQ 56
Query: 61 DLHVLLASATQRKLEDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
L + Q + ISH + LL S L P L+ ++ I + +
Sbjct: 57 TFIELFLVSFQFDTQTISHWMTSVELLGTALFSMVMLFFPLLIYQIIAAIFGSTLLGGWI 116
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
L+ + + P +++S +GIKRI+S ++V K+ K+ L +++ ++ + + +
Sbjct: 117 LSPSLLTPKLEKISPIKGIKRIFSTQSVVELFKNVFKVTLFFSLLYWVISSYISVITNLV 176
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
SA+ ++++ + L +LL + + D + H++ ++KM+KQE+KDE K+
Sbjct: 177 SAHFDTVVFTVATITIEYLGYLLLIVLIFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQE 236
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G P +K R + I + E +A +++TNPT YA+AL Y T+ +AP +VAKG++
Sbjct: 237 GRPEVKARIRQIQTQNAKRGANERVPKANVVLTNPTQYAVALIYDLTQAEAPFVVAKGKD 296
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +R++A +H++ + E L R+++ ++ +P + A+A ++ + K
Sbjct: 297 EVAVYIRELAAKHSVEVVESAELTRAIYNTTQVDQMVPNQLFVAIAHILTYVNQLK 352
>gi|323703184|ref|ZP_08114837.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
DSM 574]
gi|323531843|gb|EGB21729.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
DSM 574]
Length = 354
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 104/349 (29%), Positives = 190/349 (54%), Gaps = 2/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ KTE + +++++A +G P S + + +LA I+ L I
Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVPKSADLNGALLLLAAGIFALMAKDSLISHTQRAFFG 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ R+ +D S +V L +++ +P L+ M+ +G+ + Q + +
Sbjct: 63 YFNNLVVRRPQD-SQLVEYLIDFTVNIFASFMPFFLILMVVAVGANMAQVGFLFAPEVIL 121
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P + ++ G+KRI+S +L +KS +K+ILVG +I ++ + +L + P ++
Sbjct: 122 PKLEHLNPINGLKRIFSGRSLFELVKSILKVILVGWVIYAAVRGEFANLLAIFQSPPQTM 181
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L KV+I L++LD+ + + + +++MSKQE+K+E KQ+ G+P IK
Sbjct: 182 LDQVLTVALKVIIWGTAAYLALSILDLMYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ R + + + + +AT+++TNPTHYA+AL+Y + DAPV+VAKG +L+AK++R
Sbjct: 242 WLRRRQRQLLMNLVRKEVPQATVVVTNPTHYAVALKYERD-MDAPVVVAKGVDLLAKQIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A EH+IP+ E +AR L+ V I AIP Y+AVA+++ +Y K
Sbjct: 301 EVAREHDIPVIENVEVARFLYAHVEIGQAIPVEMYQAVAEILAMVYRLK 349
>gi|222112261|ref|YP_002554525.1| type III secretion exporter [Acidovorax ebreus TPSY]
gi|221731705|gb|ACM34525.1| type III secretion exporter [Acidovorax ebreus TPSY]
Length = 390
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +K + +K++ A ++G A SR+ S + + + LL + + +
Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LA ++ H++ L ++ L + S + V + +
Sbjct: 62 QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P F R++ G ++S L N K + ++ + + ++ M +
Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPLS 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L H + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K
Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L+A K+R
Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K
Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349
>gi|121596106|ref|YP_988002.1| type III secretion exporter [Acidovorax sp. JS42]
gi|120608186|gb|ABM43926.1| type III secretion exporter [Acidovorax sp. JS42]
Length = 390
Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +K + +K++ A ++G A SR+ S + + + LL + + +
Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LA ++ H++ L ++ L + S + V + +
Sbjct: 62 QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P F R++ G ++S L N K + ++ + + ++ M +
Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPMS 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L H + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K
Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L+A K+R
Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K
Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349
>gi|91223202|ref|ZP_01258468.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|269967109|ref|ZP_06181176.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
gi|91192015|gb|EAS78278.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|269828246|gb|EEZ82513.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
Length = 375
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +KTE S +K++ A EG P ++E + LA +Y + S++
Sbjct: 1 MSD-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQLNSIWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ T+ LE+ +V L +++P + ++ GS L+ +
Sbjct: 60 IFRYNMM-LTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKRI+S ++V +KS K+ ++ I+ L + +L +
Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|295696131|ref|YP_003589369.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
gi|295411733|gb|ADG06225.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
Length = 370
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ ++ ++A EG A S + + +LA ++ + I L
Sbjct: 15 EEKTETPTPRRRQEARKEGQAARSADLTAALVLLAAVLAVRALGETWIDE-WRRLFASFI 73
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + + + + + +I LLL G+ + IQ + P +
Sbjct: 74 TGSPIQFSTPDGWLAWMGGQVMGVFSSLILFLLLPAAAGLATGFIQVGGLFAFKAASPQW 133
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
KR+S EG +R++S+ +LV K +KI ++G I + + + +P ++
Sbjct: 134 KRISPVEGFRRLFSLRSLVEGAKMILKIAILGGIGYSLARQIFESSGSLGGMDPTALAGW 193
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ V + L + L +LD + + +L+M+KQE+K+E K++ GNP IK + +
Sbjct: 194 TGDQLWNVALEASLALLGLAILDAWYQRVSFERQLRMTKQEVKEEFKRTEGNPTIKRKIR 253
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R+ + +MM+ +AT++ITNPTHYA+ALRY D PV++AKG + A ++R+ A
Sbjct: 254 ERQRALAQRRMMQEVPKATVVITNPTHYAVALRYEPDSMDTPVVIAKGADAWAWRIRETA 313
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +P+ E P LAR L V I AIP V ++AVA+++ +Y +
Sbjct: 314 RHYGVPVVENPPLARRLHAMVEIGEAIPEVLFQAVAEVLAYVYRLR 359
>gi|294084388|ref|YP_003551146.1| flagellar protein flhB [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663961|gb|ADE39062.1| Flagellar protein FlhB [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 385
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 11/359 (3%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E KTE PS +K+E A +G S+EA +F+++ ++ ++ S +T
Sbjct: 1 MAEESSDGQEKTEDPSERKLEKAREDGQVLSSKEAFVFTTLAMAVVLMMGLSSVSSAGLT 60
Query: 60 SDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+ +A +V + + ++ + +P +++ + L
Sbjct: 61 HWGTLFRWDNADHIDTLAFGKLVQSFWMIIIISTIIGVPMMIVTLFTQ----LAVGGVNF 116
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ R++ G+KR++S +LV KS +K++L+ + + + ++L
Sbjct: 117 APKSMAFKANRINPISGLKRMFSAKSLVELGKSILKVVLLFGVAGLLIYGQLPSILRLSE 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ + +L +L+ + + +D W + KLKMS+QE KDE KQ+ G
Sbjct: 177 GTLNGAIEKMGDVFPALLGAMLIVLFIIAAIDYSWQSYSHTKKLKMSRQEQKDEHKQTEG 236
Query: 239 NPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
+P +K + + + + + + +E + AT IITNPTH+A+AL+Y+ E APV++A
Sbjct: 237 SPEVKAKIRRMQMEQSQASSQQRESLENVADATAIITNPTHFAVALKYVAGEAGAPVVLA 296
Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
G+ IA+++ + A + I I P LAR+LF I I Y AVA + IY
Sbjct: 297 MGKGRIAEQIIERANDSKITIMRSPLLARALFFTSDIGGEISEKLYNAVAIALAYIYRI 355
>gi|283834479|ref|ZP_06354220.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
29220]
gi|291070026|gb|EFE08135.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
29220]
Length = 379
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 176/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + Q + D I L H L + ++ L + + + + L+ +
Sbjct: 59 ESFISVHQYAQ-NINDPDIIGQFLEHHLLILGKFILTLLPMPVAA-LFASLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S ++LV+ K +K I++ ++ IS+ N L
Sbjct: 117 KKILPDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQELY 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ ++ V+D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKQAISDGLALYSSIMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++ R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVRARIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E NI I E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|91795014|ref|YP_564665.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
OS217]
gi|91717016|gb|ABE56942.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
OS217]
Length = 376
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE +KTE + ++I A +G P S++ + + IL C + L ++
Sbjct: 1 MSETP-KHDKTEDATPQRIRKAREQGQVPRSKDLASAALILGCSLMLTSSADWFATKISQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + L+D ++ L + L+ P L+ + + + P+ +
Sbjct: 60 LTRYNMLVSHEDLLQD-DVMLMHLGTSLIKMLELLGPLFLIVALLAAIAGALPGGPIFSF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+ GI RI+S +L+ +KS +KI L+ I+ L + L +
Sbjct: 119 ENANFKYSRIDPIAGIGRIFSSRSLIELLKSVLKITLLIGIMLSFLDTHLIDFLSYSQLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ + L + + +D+ + Y +LKMS+QEIKDE KQ G P
Sbjct: 179 VDEAVTRGIDMLSAGMLYLGLGLIVIAFIDVPYQYWHHLQELKMSRQEIKDEHKQQEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R + + +A +++ NPTHYA+AL+Y DAP ++ KG+ +A
Sbjct: 239 EVKAKIRQLQHRMGRSRADTSIPKADVLLVNPTHYAIALKYDPELADAPYVLTKGKEELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MRK+A +H++ I E P+LAR+++ ++ IP + A+A ++ + K
Sbjct: 299 LYMRKLAKQHDVEIIEIPALARAIYYSTQVDQQIPGALFMAIAHVLSYVMQIK 351
>gi|330447934|ref|ZP_08311582.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492125|dbj|GAA06079.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 375
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + +KTE + +KI A +G P +++ + + +A +++ F I+ V +
Sbjct: 1 MS-QSSAQDKTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQI-DVIWQVLN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L + L +L++P L + I S L+ +
Sbjct: 59 SVFQLNMTISHDDLRSPWLAIEALGTSLAIIIQLLLPLFALIFITAIASSLLLGGWLFYP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L +
Sbjct: 119 AGVLPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDVNLSRLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLIMTILFHGILLMGVALFIFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R K+ +A +A ++I NPTHYA+A++Y T ++AP +VAKG + A
Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ IA +H++ I P L R+++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQTIAKQHDVEILRSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351
>gi|315638787|ref|ZP_07893959.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
JV21]
gi|315481005|gb|EFU71637.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
JV21]
Length = 356
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 103/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LLF V +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ D+ I ++ ++ P +L M+ GI ++Q +
Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ L+ +K +K+ +V TI I L + + +
Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVGVVFTIAFIVLLQFVKELPKVELYS 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + ++++ + +LD+ Q++ LKMSKQEIKDE KQ G+P
Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+ALRY T+ +AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ +Y
Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347
>gi|269960154|ref|ZP_06174530.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
gi|269835125|gb|EEZ89208.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
Length = 375
Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S +K++ A EG P ++E + LA ++ + S++
Sbjct: 1 MSE-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQLNSIWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ LE+ +V L +++P + ++ GS ++ +
Sbjct: 60 VFRYNM-TLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKRI+S ++V +KS VK++++ I+ L + +L +
Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|312883875|ref|ZP_07743592.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368333|gb|EFP95868.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 350
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 97/347 (27%), Positives = 183/347 (52%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E S+++ L+ +LF FS S S L +L
Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVS-STLILALVAVLFAFSDYYMSHISALMLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D +V + ++ L+ P LL+ ++ I S + Q + + + VKP
Sbjct: 61 SKLAYQGFQD--ALVDVAIAMAEEIIYLLAPILLVTVLVTIVSNMGQFGLLFSAHSVKPE 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +LV+F+KS +K+ L+ II I+L N T+L+ + + +
Sbjct: 119 IKKINPAEGAKRIFSMKSLVDFIKSILKVSLLSCIIWITLKGNLNTLLNIPNCGLNCVPI 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V++++ + + + +D + ++ +LKMSK E+K E K+ G+P IK+ +
Sbjct: 179 ITGVLVQQLMFISAIGFIIIAAVDYAYQKYEHTKQLKMSKDEVKREYKEMEGSPEIKSAR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M +
Sbjct: 239 RQFHQELQSSTQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAL 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E IP+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIEATAEILRWVESLE 345
>gi|322832554|ref|YP_004212581.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
gi|321167755|gb|ADW73454.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
Length = 384
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EAP++ ++E A EG P SRE + + L L +
Sbjct: 1 MAEE-SDLEKSEAPTAHRLEKAREEGQIPRSRELTSILMLGGGLTLLWMSGESMARQLGV 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + D ++ + L A ++P + ++ + + L+ + +
Sbjct: 60 MISQGLK-FDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F R+ G+KR++S L +K+ +K +LVGT+ + L + M+ ++
Sbjct: 119 KSFEFKFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A V +M++L + + D+ W KL+MSKQ+I+DE K G+P
Sbjct: 179 TIPALGEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K
Sbjct: 299 LRIRELGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLK 351
>gi|170737009|ref|YP_001778269.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
gi|169819197|gb|ACA93779.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
Length = 379
Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 161/353 (45%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D KTE + +K+ A EG SR+ IL L ++ + +
Sbjct: 1 MSEQQTGD-KTEKATPQKLRKARMEGQVARSRDIGTCVGILVALKLIVVLTPAWLVELKH 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A + + + V +L ++ ++ L I + LI +++
Sbjct: 60 IFALSFADLSGDDR--LGNAVSMLFPAAVLLMCKMLAPLAAVPAGIIVASLIPGGWIISH 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P R++ G+KR+ S + + F + +K +++ + I N + A
Sbjct: 118 KNIMPKLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSNLSGFIRLQGAP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + I ++DI + +MSK++IK+E+KQS G P
Sbjct: 178 LADALTGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDIKEEMKQSEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R + I R R + + A +++ NPTHYA+AL+Y T AP +VAKG + +A
Sbjct: 238 EVKSRIRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAPYVVAKGVDEVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A HN+ + E P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LFIRDVARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVLSYVLQIK 350
>gi|239834455|ref|ZP_04682783.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
3301]
gi|239822518|gb|EEQ94087.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
3301]
Length = 356
Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats.
Identities = 120/347 (34%), Positives = 199/347 (57%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ + V F+KS K + I+ + D ++++
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRSGQVEFLKSLAKFLAASVIVFVVFFSGNSLFTDAVASD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|57506049|ref|ZP_00371972.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
RM3195]
gi|57015657|gb|EAL52448.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
RM3195]
Length = 356
Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats.
Identities = 103/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LLF V +
Sbjct: 1 MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ I ++ ++ P +L M+ GI ++Q +
Sbjct: 59 LYRYYQNFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+ +++ +G+K ++S+ L+ +K +K+ +V TI I L + + +
Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVSVVFTIAFIVLLQFVKELPKVELYS 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + ++++ + +LD+ Q++ LKMSKQEIKDE KQ G+P
Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R +M++ + A ++ITNPTHYA+ALRY T+ +AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ +Y
Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347
>gi|196247620|ref|ZP_03146322.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
gi|196212404|gb|EDY07161.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
Length = 360
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S +A + +LA + L + + L+
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L I + L A+ L+ P ++ + +Q + + +K +
Sbjct: 73 DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P ++L
Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSVLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A ++++IA
Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357
>gi|323191512|gb|EFZ76773.1| flhB HrpN YscU SpaS family protein [Escherichia coli RN587/1]
Length = 379
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|148976240|ref|ZP_01812964.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
gi|145964334|gb|EDK29589.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
Length = 379
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 180/353 (50%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ +K+E PS K+ A EG P ++E ++++ + Y I
Sbjct: 1 MSDHQDSGDKSEQPSQHKLTKARREGQVPRAKEFVSSITLISVVAY-YVLNVDMIKQSFI 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L ++ + + IV L+ S L P L+ M+ I + + +
Sbjct: 60 ELFLVSFHFDSQTVSQPMAIVELVGTALFSMITLFFPLLIYQMIAAIVGSTLLGGWIFSP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P ++++S +G+KRI+S ++V K+ +K+ L T++ ++ + + +SA+
Sbjct: 120 SLLIPKWEKISPLKGLKRIFSSQSIVELFKNVIKVSLFFTLLYWVISSYISVITNLVSAH 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+++ + L +LL + + D + H++ ++KM+KQE+KDE K+ G P
Sbjct: 180 FDTVVLSVATITIEYLGYLLLIVLLFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQEGRP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + E +A++++TNPT YA+AL Y ++ +AP +VAKGQ+ +A
Sbjct: 240 EVKARIRQIQTQNAKRSANERVPKASVVLTNPTRYAIALIYDLSQAEAPFVVAKGQDDVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A +H + I E P+L R+++ I+ +P + A+A ++ + K
Sbjct: 300 LYIRELAAKHEVEIVESPALTRAIYNTTQIDQMVPNQLFIAIAHILTYVNQLK 352
>gi|46581635|ref|YP_012443.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601206|ref|YP_965606.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris DP4]
gi|46451058|gb|AAS97703.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561435|gb|ABM27179.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris DP4]
gi|311235277|gb|ADP88131.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris RCH1]
Length = 357
Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 176/348 (50%), Gaps = 4/348 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE + K++ A N+GN S+E S + A L+ + F +
Sbjct: 1 MAQKDPS--RTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFMLGVLNEHMQE 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+ + + + LL + + +++P +L + + +Q +
Sbjct: 59 VFRFFLSRPHDFTPNEQT-VYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKLWTT 117
Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
K + R ++ +KR++ S L+ KS ++ + +G I L + +L A
Sbjct: 118 EVFKLDWSRFNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPLYFA 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ I + T +++ L+ + + +D+ ++ + LKM+K E+KDE KQ+ G+
Sbjct: 178 DMSGIAVYMLETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQAEGD 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K++Q+ + +M++ A ++ITNPTH A+ALRY T AP++VA G + +
Sbjct: 238 PVVKSQQRQKMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGADHL 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
AK++R++A EHN+PI E LAR+L+K V + IP YKAVA ++
Sbjct: 298 AKRIREVAREHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAILA 345
>gi|156933534|ref|YP_001437450.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
gi|156531788|gb|ABU76614.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
Length = 348
Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats.
Identities = 89/317 (28%), Positives = 164/317 (51%), Gaps = 1/317 (0%)
Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
+L + + S + + L L + D +V ++ L A ++
Sbjct: 1 MLMLLVGVAVIWVGGSLLARQLAAMLSHGL-HFDHSIINDPKLVVGQISFLIKQALMALV 59
Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
P ++ ++ + + ++ + N V ++++ GIKRI+S +L +K+ +K +
Sbjct: 60 PLIMGVVIVALFAPMLLGGLLFNPKAVAFKPEKLNPLPGIKRIFSSQSLAELLKAILKSV 119
Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
LVG + + L N+ ++ IS +P + + +A V I+I++ + + D+ W
Sbjct: 120 LVGIVTGVFLWYNWPDIMRLISESPIAAMRNALNLVALCCILIVMGLVPMVGFDVFWQIV 179
Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
KL+MS+Q+I+DE K G+P +K R + R R +MM +A +I+ NPTHY+
Sbjct: 180 SHTKKLRMSRQDIRDEFKNQEGDPHVKGRIRQQQREAARRRMMADIPKADVIVNNPTHYS 239
Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
+AL+Y + + AP +VAKG L+A ++R+I EH IP+ E P LAR+L++ I IP
Sbjct: 240 VALQYDENKMSAPKVVAKGAGLVALRIREIGNEHRIPMLEAPPLARALYRHAEIGQQIPG 299
Query: 337 VFYKAVAQLIYKIYHKK 353
Y AVA+++ ++ K
Sbjct: 300 QLYAAVAEVLAWVWQLK 316
>gi|293408345|ref|ZP_06652184.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471523|gb|EFF14006.1| conserved hypothetical protein [Escherichia coli B354]
Length = 379
Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAA-LFSSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|297530588|ref|YP_003671863.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
gi|297253840|gb|ADI27286.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
Length = 360
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + S +LA + L + + L+
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L + + L AS L+ P ++ + +Q + + +K +
Sbjct: 73 DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H + E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357
>gi|138894758|ref|YP_001125211.1| flagellar biosynthesis protein FlhB [Geobacillus
thermodenitrificans NG80-2]
gi|134266271|gb|ABO66466.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans
NG80-2]
Length = 360
Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S +A + +LA + L + + L+
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L I + L A+ L+ P ++ + +Q + + +K +
Sbjct: 73 DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P ++L
Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSMLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A ++++IA
Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357
>gi|304412527|ref|ZP_07394133.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
gi|307307186|ref|ZP_07586924.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
gi|304349169|gb|EFM13581.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
gi|306910425|gb|EFN40856.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
Length = 376
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 81/347 (23%), Positives = 162/347 (46%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+KTE + +K A EG P S++ + + ++ +L + + S L
Sbjct: 6 QQDKTEEATPQKKRKAREEGQVPRSKDLASAA-LVVGCSAMLTTNADWFATRVSGLTKYN 64
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T+ LE ++ L + ++ P ++ + + + P+ N +
Sbjct: 65 MLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGNANFK 124
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + +
Sbjct: 125 YSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPIDEAVR 184
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + + +D+ + Y +L+MS+QE+KDE Q G P IK +
Sbjct: 185 DGINLLSQGMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEIKAKI 244
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A MR++
Sbjct: 245 RQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALYMREL 304
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +H+I I + P L R+++ ++ IP + A+A ++ + K
Sbjct: 305 AKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351
>gi|121601720|ref|YP_989412.1| flagellar biosynthesis protein FlhB [Bartonella bacilliformis
KC583]
gi|120613897|gb|ABM44498.1| flagellar biosynthetic protein FlhB [Bartonella bacilliformis
KC583]
Length = 356
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 115/355 (32%), Positives = 199/355 (56%), Gaps = 1/355 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ +++TE P+ KI A +GN P SRE + +S+++ + +F P + +++
Sbjct: 1 MSDEKPDKESQTEEPTEHKIHKAEEKGNLPFSRELPILASLMSFSLITIFVAFPAMSNLS 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L + + L+ + + + L++ + I + IQ P +
Sbjct: 61 RFLTEWLERPESWHINTAEDVKHLIYLVGGNLGLALAALLIIIPLISIAASAIQNAPRIV 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P + R+S G RI+ + F+KS VK+I V I+ I +N ++ +
Sbjct: 121 TERISPKWSRISPANGFGRIFGKAGFIEFLKSLVKLIGVSIIVYIMFFKNNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + ++ +A + D+ WS W +L+M+KQE+KDE K GN
Sbjct: 181 DAPALPEYIRQKLVDLSLSFIVAVAIIAGFDLAWSRFYWRQQLRMTKQEVKDEYKNLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K+R +S+AR RIR KM+ AT+I+TNPTH+++ALRY + APV++AKGQ+++
Sbjct: 241 PMVKSRMRSLARDRIRRKMIANVPTATLIVTNPTHFSVALRYKPPLDHAPVVIAKGQDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
A +R+IA +H+IPI E+ LAR+L+KQV ++ IPP FY+ VA LI I +KI
Sbjct: 301 ALHIREIATKHDIPIIEDQPLARALYKQVEVDQTIPPEFYEGVAALIRFINSQKI 355
>gi|296447442|ref|ZP_06889367.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
OB3b]
gi|296255062|gb|EFH02164.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
OB3b]
Length = 358
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 116/349 (33%), Positives = 206/349 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE++ D++TE S KKI DAL +G P++R+ ++ L L+ + F +
Sbjct: 1 MSESEDDDSRTEEASEKKILDALEQGKTPVARDVAVAVLFLGFLLCVSFVIETVGPRLAL 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++L++ Q L + + ++ R + P L +FM+ G+ S +Q P L
Sbjct: 61 SMELMLSNVGQFSLANGADAFMQSRAVAEEIGRFLAPMLSIFMITGLLSAAMQGAPRLVF 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S ++G+KRI+ + +V +KS KI ++G + SLT + ++D +
Sbjct: 121 KRIEPDLSRISPQQGLKRIFGVTGVVELVKSIAKIAVIGGAVVFSLTVDRDLIIDAMRME 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + ++ ++ + + + + D+ WS +W ++MS+QE+K+E KQS G+P
Sbjct: 181 PAHLPSLLLKLIIRLTSVVCIPVVLIALADLAWSKFKWRRDMRMSRQEMKEEHKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R +S+A R R +MM +AT++I NPTHYA+ALRY++TE AP +VAKG++L+A
Sbjct: 241 LVKARMRSLALERSRKRMMAQVPQATMVIANPTHYAIALRYVRTEGGAPTVVAKGKDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R+IA H +P+ E P LAR+++ V ++ IP FY+ VA+LI+ +
Sbjct: 301 LKIREIAEAHGVPVLERPELARAMYNHVEVDQMIPSEFYRPVAELIHFL 349
>gi|306813328|ref|ZP_07447521.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
gi|305854091|gb|EFM54530.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
Length = 379
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPQVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|327254528|gb|EGE66144.1| flhB HrpN YscU SpaS family protein [Escherichia coli STEC_7v]
Length = 379
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K K ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|170683079|ref|YP_001742349.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
gi|170520797|gb|ACB18975.1| lateral flagellar export/assembly protein LfhB [Escherichia coli
SMS-3-5]
Length = 379
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAINDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|212637760|ref|YP_002314285.1| flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
gi|212559244|gb|ACJ31698.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
Length = 393
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 183/353 (51%), Gaps = 1/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D+ +KTE + +K++ A +EG P S++ + + I+ C + +L + I + +
Sbjct: 17 MSNKDSGQSKTEQATPQKLKKAKSEGQVPRSKDLASSALIIGCSL-MLTTSADWIAAKVA 75
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S T+ +L++ ++ L L ++ P L+ + + + + P+ N
Sbjct: 76 KMTRTNMSFTKAQLDEPGMMMRHLGQSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 135
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+ GI R+ S+ +LV +KS +KI+L+ I+ + L +N T+L F
Sbjct: 136 KNAAFKYSRIDPIAGIGRMASVKSLVELVKSILKIVLLMGIMWLFLEKNLQTLLSFNQLP 195
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + L + +T +D+ + Y +++LKMS QE+KDE KQ G P
Sbjct: 196 VDEAVSKGIEMLSLGMFFLGLGLLLITFIDVPYQYWHHHNELKMSLQEVKDEHKQQDGKP 255
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + + R + + +A +++ NPTHYA+AL+Y + DAP ++ KG + +A
Sbjct: 256 EIKAKIRQMQQRISRSRADISVPKADVLLVNPTHYAVALKYDIDKADAPYVLTKGTDELA 315
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A H++ + E P L R+++ ++ IP + A+A ++ + K
Sbjct: 316 LHMREVAKRHDVEVIELPPLTRAIYYSTKVDQQIPAALFIAIAHVLTYVLQIK 368
>gi|261419437|ref|YP_003253119.1| flagellar biosynthesis protein FlhB [Geobacillus sp. Y412MC61]
gi|319766252|ref|YP_004131753.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
gi|261375894|gb|ACX78637.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC61]
gi|317111118|gb|ADU93610.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
Length = 360
Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + S +LA + L + + L+
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L + + L AS L+ P ++ + +Q + + +K
Sbjct: 73 DSASPSL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDG 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H + E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357
>gi|331645394|ref|ZP_08346498.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
gi|331045556|gb|EGI17682.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
Length = 379
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQQINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLS 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|296274004|ref|YP_003656635.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
7299]
gi|296098178|gb|ADG94128.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
7299]
Length = 350
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 101/352 (28%), Positives = 181/352 (51%), Gaps = 7/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ KTE P++KK+E A EGN P S E + +L +Y+LF+ + S+
Sbjct: 1 MADDTD---KTEEPTAKKLEKARGEGNVPKSGEVVGAAILLFGTVYMLFWSTYTYDSIKK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + Q + + + + + P L+ ++ I ++Q
Sbjct: 58 LMIYIFNKIGQEL--TSTDYYNMTNAIITTIFYSLAPFFLVVILLAIILNVVQ--FGFLT 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N +K F++++ G+K ++S+ L+ K K+ L+ ++TI Y + + +
Sbjct: 114 NPIKLKFEKLNPVSGLKGLFSLKKLLEATKLLAKLTLIVFVMTILFGLTYKGFIAMMDKD 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S L F + + IL + ++D ++ H ++ LKMSK+E+KDE K G+P
Sbjct: 174 ITSSLDAMFTLLLYFVGAILFIVILFAIIDYFFTRHYYFKSLKMSKEEVKDEHKNMEGDP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K I +M + A ++ITNPTHY++AL+Y N AP +VAKG + +A
Sbjct: 234 KVKAKIKGIQYKLHYERMRASAKDADVVITNPTHYSVALQYDSAVNSAPKVVAKGIDFLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R +A E+ IPI E P+LAR+L+ Q+ I+ IP FY+A+A++ ++
Sbjct: 294 LKIRDVAKENKIPIIENPALARALYDQIQIDQEIPGEFYQAMAEVFSYVFEL 345
>gi|126176175|ref|YP_001052324.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
gi|125999380|gb|ABN63455.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
Length = 376
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 81/347 (23%), Positives = 162/347 (46%), Gaps = 1/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+KTE + +K A EG P S++ + + ++ +L + + S L
Sbjct: 6 QQDKTEEATPQKKRKAREEGQVPRSKDLASAA-LVVGCSAMLTTNADWFATRVSGLTKYN 64
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T+ LE ++ L + ++ P ++ + + + P+ N +
Sbjct: 65 MLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGNANFK 124
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + +
Sbjct: 125 YSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPIDEAVR 184
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + + +D+ + Y +L+MS+QE+KDE Q G P IK +
Sbjct: 185 DGINLLSQDMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEIKAKI 244
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A MR++
Sbjct: 245 RQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALYMREL 304
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +H+I I + P L R+++ ++ IP + A+A ++ + K
Sbjct: 305 AKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351
>gi|300936100|ref|ZP_07151041.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
21-1]
gi|300458749|gb|EFK22242.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
21-1]
Length = 379
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K K ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|28901400|ref|NP_801055.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835995|ref|ZP_01988662.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
gi|260362954|ref|ZP_05775823.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
gi|260880241|ref|ZP_05892596.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AN-5034]
gi|260895358|ref|ZP_05903854.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
Peru-466]
gi|260901183|ref|ZP_05909578.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ4037]
gi|28809947|dbj|BAC62888.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750749|gb|EDM61494.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
gi|308085557|gb|EFO35252.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
Peru-466]
gi|308091839|gb|EFO41534.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AN-5034]
gi|308109328|gb|EFO46868.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ4037]
gi|308112104|gb|EFO49644.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
gi|328469334|gb|EGF40280.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329]
Length = 375
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +KTE S +K++ A EG P ++E + +A +Y + S+
Sbjct: 1 MSD-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFMAVALYFYSQINSIWESMFG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S T+ LE+ +V + +++P + ++ GS ++ +
Sbjct: 60 IFRYNM-SLTKADLENPQQMVEQVGQSLGMIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P +++ GIKRI+S +LV +KS +K+ ++ I+ L + +L +
Sbjct: 119 ANMLPKLSKLNPLSGIKRIFSTRSLVELVKSTIKVTVIFGILYGYLDNHLQPLLGIQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+++ + V+DI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LNQGFSMVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|264676579|ref|YP_003276485.1| type III secretion exporter [Comamonas testosteroni CNB-2]
gi|262207091|gb|ACY31189.1| type III secretion exporter [Comamonas testosteroni CNB-2]
Length = 393
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE +K + +K++ +G SR+ S + + + +L P I +
Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + + + + L+ + S + + +
Sbjct: 58 AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S L +K I++G + ++ N + +
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALTMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R + A +A ++TNPTHYA+ALRY AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349
>gi|319781693|ref|YP_004141169.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167581|gb|ADV11119.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 360
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 131/353 (37%), Positives = 219/353 (62%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D+KTE + KKI D + +G P SRE +LF+S +A L++ +F+ I +
Sbjct: 1 MADAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALFASFVAILVFTVFYAKDAIIDLGM 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + L ++ + ++ L + L R V+ ++L + G+G+ + Q +P
Sbjct: 61 FLSMFLEKPEAWPMDTETDVIALYKIVLLEVGRAVLSLMVLLTVAGVGASVFQNMPQFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V+P R+S+ +G R++ I V F+KS K+ +++ +L+E++ +L + N
Sbjct: 121 ERVRPQLSRISIAKGWNRLFGIQGWVEFLKSLGKVGFAIVVLSFTLSEDHRKLLAGMITN 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P
Sbjct: 181 PIAFGLVIRGIAVDILVAIVFVMGLIAAVDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP+++AKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPMVLAKGQDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNIP+FE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK
Sbjct: 301 LKIREIAREHNIPVFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353
>gi|94986973|ref|YP_594906.1| flagellar biosynthesis protein FlhB [Lawsonia intracellularis
PHE/MN1-00]
gi|94731222|emb|CAJ54585.1| Flagellar biosynthesis pathway, component FlhB [Lawsonia
intracellularis PHE/MN1-00]
Length = 357
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 95/354 (26%), Positives = 190/354 (53%), Gaps = 5/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ + KTE + K+ ++A +EG+ P S E + + A ++ L + +
Sbjct: 1 MSDDPS---KTEKATPKRRQEARSEGSVPKSEEVTKALTTAAGMLGLAIYSGVMGRHFET 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + ++ + L +++ + L++P LL + S +Q +
Sbjct: 58 IFYYIFTESFRFEV-TAQSVYALFIYVAQEIAILLMPILLFIAVTAWISLRVQVGALWTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
K + + ++ +G+K +++ LV ++S V++I++G + + + + L A
Sbjct: 117 KVFKFKWSKFNIIKGLKGMFASQQTLVRLLRSLVQVIVIGIVPYMIIKGEFSNFLPLYYA 176
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P + + T +++ L+ + + V D+ ++ + + LKM+KQEIKDE KQ G+
Sbjct: 177 SPSGVADYMLNTGIVLVLYTLIPMTIIAVADLVYNRYSYEENLKMTKQEIKDESKQQEGD 236
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
PI+K +Q+ + ++MM+ +A +++TNP H A+ALRY E AP+++A G + +
Sbjct: 237 PIVKQKQRQKMMQMMTNRMMQDVPKADVVVTNPKHIAVALRYNALEAPAPLVLAIGVDRV 296
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+K+++IA E+NIPI E LAR+L+K V + IP YKAVA ++ ++ K
Sbjct: 297 AEKIKEIARENNIPIRENVPLARALYKAVGVGEMIPEELYKAVAAILASVWRLK 350
>gi|188494712|ref|ZP_03001982.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
gi|188489911|gb|EDU65014.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
Length = 379
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|170021382|ref|YP_001726336.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
gi|169756310|gb|ACA79009.1| type III secretion exporter [Escherichia coli ATCC 8739]
Length = 379
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPQVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ ISL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|87307411|ref|ZP_01089556.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
3645]
gi|87290151|gb|EAQ82040.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
3645]
Length = 369
Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 174/352 (49%), Gaps = 3/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D K+E P+ + ++A N+G S++ +L + ++ +FS I+
Sbjct: 1 MAEQDDD--KSEDPTQHRRDEARNQGQITKSQDLISA-GMLVIALGVIMYFSQSIFHFFG 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D S + + ++ P LLL + I L+Q +
Sbjct: 58 DFTRDKLSVPPPLEVSFGWAINENATAVWRLASVMTPILLLMFVAAIALNLMQTGFLFLP 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + KR++ G R++++ N V F +K+++V T+ +SL + T+L +
Sbjct: 118 DKLSLDIKRINPMSGFGRLFALANFVKFGFGIIKVLIVSTVAAVSLYYDMPTILGLSELS 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I T + I + L ++D + + + LKM+KQE+++E+K G+P
Sbjct: 178 AGEIASFLLTTAFWTSMKIAAALLILALMDYAFQWWKHEQDLKMTKQEVREEMKSLQGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ R++ +AR ++M +A ++TNPT A+AL+Y + AP++VAKG L+A
Sbjct: 238 SLIARRRQVARQLAMNRMSTDVPKADFVVTNPTELAIALKYDPYKMAAPIVVAKGAGLVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++R++A E NIPI E LAR+L++ I+ AIP Y AVA+++ +Y
Sbjct: 298 QRIRRLALESNIPIVERKELARALYRDAEIDQAIPAEQYAAVAEVLRYVYEL 349
>gi|330976011|gb|EGH76077.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 355
Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats.
Identities = 88/329 (26%), Positives = 165/329 (50%), Gaps = 1/329 (0%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
+G S+E + +L LL F S ++ + + ++ L D S++ L
Sbjct: 2 DGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSELMRDNF-TISRETLMDQSYMGKAL 60
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
+ A +V+P L+ ++ + ++ + + P F R++ G+KR++S +
Sbjct: 61 LSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFSRMNPAAGLKRMFSPHA 120
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
LV +KSF K ++ + + L ++ + H+ V + +
Sbjct: 121 LVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQAMIHSLVVVGWSSFWMACGLI 180
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
+ D+ + ++ + KL M+KQE++DE K S G+P +K R + + R + +MM +
Sbjct: 181 FIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQLQREMSQRRMMASVPE 240
Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
A +IITNPTH+A+AL+Y + AP+L+AKG +L+A K+R+I + I I E +LARS+
Sbjct: 241 ADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGAHNEILILESAALARSI 300
Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ IP Y AVAQ++ +Y +
Sbjct: 301 YYSTELDQEIPAGLYLAVAQVLAYVYQIR 329
>gi|299531277|ref|ZP_07044687.1| type III secretion exporter [Comamonas testosteroni S44]
gi|298720684|gb|EFI61631.1| type III secretion exporter [Comamonas testosteroni S44]
Length = 393
Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE +K + +K++ +G SR+ S + + + +L P I +
Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + + + + L+ + S + + +
Sbjct: 58 AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S L +K I++G + ++ N + +
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALAMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R + A +A ++TNPTHYA+ALRY AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349
>gi|260768792|ref|ZP_05877726.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
gi|260616822|gb|EEX42007.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
Length = 372
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 175/348 (50%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +KTE SS+K++ A +G S+E S ++ C+ Y + V
Sbjct: 2 SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYFYANADSLSGHLMQLFEVS 61
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
T D HI+ L+T ++ P ++ + + + NL+ + P
Sbjct: 62 FR-FTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + + A+ + +
Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + V ++L M++L V+DI + + +++KM+KQE+K E K+ G P IK+R
Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+N +A +R
Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +H + + P + RS++ +N IP + AVAQ++ + K
Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348
>gi|153011537|ref|YP_001372751.1| flagellar biosynthesis protein FlhB [Ochrobactrum anthropi ATCC
49188]
gi|151563425|gb|ABS16922.1| flagellar biosynthetic protein FlhB [Ochrobactrum anthropi ATCC
49188]
Length = 356
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 119/347 (34%), Positives = 198/347 (57%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K + I+ + D ++++
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKFLAASVIVFVVFFNGNSLFTDAVASD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAAFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ AP++VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPIVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|163802012|ref|ZP_02195908.1| translocation protein in type III secretion [Vibrio sp. AND4]
gi|159174153|gb|EDP58961.1| translocation protein in type III secretion [Vibrio sp. AND4]
Length = 350
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + ILA + L F + +++ L +
Sbjct: 2 SGEKTELPTPKKLRDARKKGQVAKSQEVVSSALILALIAVLFAFADYYMSHISALLLLPS 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q + + + + L+ P L++ + I S + Q + + VKP
Sbjct: 62 KLAYQGFHDALIDVAIAIAE---EIIYLLAPILIVAALVAIMSNMAQFGLLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+V+ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + +
Sbjct: 119 IKKVNPAEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPA 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V++++I+ + + +D + +LKMSK E+K E K+ G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAVDYAYQKFNHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + R+ +++TNPTH A+ L Y + E P++ K + +AK+M I
Sbjct: 239 RQLHQEMQSSNQRDNVKRSNVLVTNPTHIAIGLYYKKDETPLPIITLKETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E IP+ ++ LAR+L+ ++ IP ++ A+++ + +
Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIESTAEILRWVASLE 345
>gi|294665988|ref|ZP_06731251.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604236|gb|EFF47624.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 357
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K ++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKNLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|256020206|ref|ZP_05434071.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
gi|260866391|ref|YP_003232793.1| putative lateral flagellar export pore protein [Escherichia coli
O111:H- str. 11128]
gi|300817293|ref|ZP_07097511.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
107-1]
gi|307315219|ref|ZP_07594798.1| type III secretion exporter [Escherichia coli W]
gi|331666524|ref|ZP_08367398.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
gi|332281368|ref|ZP_08393781.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|257762747|dbj|BAI34242.1| predicted lateral flagellar export pore protein [Escherichia coli
O111:H- str. 11128]
gi|300530269|gb|EFK51331.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
107-1]
gi|306905400|gb|EFN35937.1| type III secretion exporter [Escherichia coli W]
gi|315059466|gb|ADT73793.1| Lateral flagellar export/assembly protein [Escherichia coli W]
gi|323178517|gb|EFZ64095.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1180]
gi|323379976|gb|ADX52244.1| type III secretion exporter [Escherichia coli KO11]
gi|331065748|gb|EGI37632.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
gi|332103720|gb|EGJ07066.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 379
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ +SL N+ + L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|56419772|ref|YP_147090.1| flagellar biosynthesis protein FlhB [Geobacillus kaustophilus
HTA426]
gi|56379614|dbj|BAD75522.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
Length = 360
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + +K ++ +G S + S +LA + L + + L+
Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L + + L AS L+ P ++ + +Q + + +K +
Sbjct: 73 DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMAMKIKEVA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H + E LA++L++Q + IP F+KAVA+++ +Y K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357
>gi|253702491|ref|YP_003023680.1| flagellar biosynthesis protein FlhB [Geobacter sp. M21]
gi|251777341|gb|ACT19922.1| flagellar biosynthetic protein FlhB [Geobacter sp. M21]
Length = 353
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 186/353 (52%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + ++ +
Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLKTMKT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + +L + + L+ + ++ P +L+ ++ GI + Q ++
Sbjct: 60 SMQEIFGGLARPEL-TFAAVHTLMIKEFGYLAIMLAPFILVGIVAGIAVEVTQGGLTVSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + +
Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIIYLVDQD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G+P
Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFIENLKMTKQEVKDEHKNMEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +QK R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A
Sbjct: 239 AVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAIALKYDRLQMAAPVVLFKGVDQMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ A EHN+ + E LAR L+ QV IP + AVA+++ +Y K
Sbjct: 299 LQIKITAREHNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351
>gi|159024053|gb|ABW87281.1| HrcU [Xanthomonas fuscans subsp. fuscans]
Length = 357
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|260853445|ref|YP_003227336.1| putative lateral flagellar export pore protein [Escherichia coli
O26:H11 str. 11368]
gi|257752094|dbj|BAI23596.1| predicted lateral flagellar export pore protein [Escherichia coli
O26:H11 str. 11368]
gi|323158016|gb|EFZ44117.1| flhB HrpN YscU SpaS family protein [Escherichia coli EPECa14]
Length = 379
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI+R++S +L K VK ++V ++ +SL N+ + L +
Sbjct: 117 KKILPDFSKISPLKGIERLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|323181524|gb|EFZ66944.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1357]
Length = 379
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI+R++S +L K VK ++V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|89068708|ref|ZP_01156094.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
gi|89045671|gb|EAR51733.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
Length = 373
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 107/357 (29%), Positives = 195/357 (54%), Gaps = 5/357 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ +KTE PS +K++ A ++G+ P SRE + + ++ F + +
Sbjct: 1 MAEDEDKHSKTEQPSERKLKKARDKGDVPASRETGTAMVVFSLMLLSAFLIPSVGSGLVA 60
Query: 61 DLHVLLASATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
L L+ A Q +++ ++ + L + L+ R++ P LL ++ + LIQ
Sbjct: 61 ALGALIDVAGQVEIDSGRAGLADVSALSSELTGQVGRVLAPLFLLMIVGALFGVLIQGET 120
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
V++L ++P + ++S G+KR++S + +V F+K+ +K+++V I T +
Sbjct: 121 VVSLERIRPKYSKISPLGGVKRLFSADMIVEFLKNTLKVVIVAAIGTWIARRAVSQVW-M 179
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
S P ++ V +L+ + + DI W QW K +MS +E++DE K++
Sbjct: 180 GSLAPEALPGFVRGEVTAMLMATAALLVPFAIADILWKRAQWTKKQRMSLKEVRDEHKET 239
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK ++ I R R R ++ A +AT+IITNPTH+A+ALRY + APV VAKG
Sbjct: 240 EGDPFIKQKRTDIRRERARQRIATAVPKATVIITNPTHFAVALRYQPGVDQAPVCVAKGA 299
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A ++R++ E++IPI E LARSL I++ +P ++A+A++I + K
Sbjct: 300 DHVAARIRELGRENDIPILENKPLARSLHAVAEIDAVVPVEHWQALAEIISWVMDLK 356
>gi|315180495|gb|ADT87409.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218]
Length = 372
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 174/348 (50%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +KTE SS+K++ A +G S+E S ++ C+ Y V
Sbjct: 2 SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYFYANADSLSGHFMQLFEVS 61
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
T D HI+ L+T ++ P ++ + + + NL+ + P
Sbjct: 62 FR-FTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + + A+ + +
Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + V ++L M++L V+DI + + +++KM+KQE+K E K+ G P IK+R
Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+N +A +R
Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +H + + P + RS++ +N IP + AVAQ++ + K
Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348
>gi|301646788|ref|ZP_07246642.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
146-1]
gi|307136835|ref|ZP_07496191.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
gi|331640691|ref|ZP_08341838.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
gi|301075023|gb|EFK89829.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
146-1]
gi|315616850|gb|EFU97467.1| flhB HrpN YscU SpaS family protein [Escherichia coli 3431]
gi|331040065|gb|EGI12273.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
Length = 379
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI R++S +L K VK ++V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ ++D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|218703503|ref|YP_002411022.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
gi|293403334|ref|ZP_06647425.1| predicted protein [Escherichia coli FVEC1412]
gi|298378945|ref|ZP_06988826.1| type III secretion protein SctU [Escherichia coli FVEC1302]
gi|300898063|ref|ZP_07116432.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
198-1]
gi|218430600|emb|CAR11466.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
coli UMN026]
gi|291429187|gb|EFF02207.1| predicted protein [Escherichia coli FVEC1412]
gi|298280058|gb|EFI21562.1| type III secretion protein SctU [Escherichia coli FVEC1302]
gi|300358241|gb|EFJ74111.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
198-1]
Length = 379
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI+R++S +L K VK +V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|157373227|ref|YP_001471827.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
gi|157315601|gb|ABV34699.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
Length = 376
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 179/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +KTE + +K++ A ++G P S++ + + I+ C + L V
Sbjct: 1 MS-KDTGQSKTEKATPQKLKKAQDQGQVPRSKDLAATALIIGCSLMLTASADWFATRVAR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S T+ +L++ ++ L + ++ P ++L + + + + PV N
Sbjct: 60 -VAQYNMSLTKAELDEPGMMMSHLGTSLVEILNILGPIIVLIAVLAMVAGSMPGGPVFNF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+ GI R++S+ +LV +KS +KI+L+ I+ L N ++L +
Sbjct: 119 KNAAFKYSRIDPIAGIGRMFSMKSLVELVKSILKIVLLIGIMFTFLEHNLQSLLGYSQLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ + + + +T +D+ + Y +++LKMS+Q++KDE KQ G P
Sbjct: 179 IDEAVRKGIDILSLGMLYLGIGMLVITFIDVPYQYWHHHNELKMSRQDVKDEHKQQEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + + R + A +A +++ NP HYA+AL+Y + DAP ++ KG + +A
Sbjct: 239 EIKAKIRQLQQRIGRSRADVAIPQADVLLVNPNHYAVALKYDVEKADAPYVLTKGTDELA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR+IA H++ + E P LAR+++ + IP + A+A ++ + K
Sbjct: 299 LYMRQIAKHHDVEVIELPPLARAIYYSTQVEQQIPAALFIAIAHVLSYVLQIK 351
>gi|302387776|ref|YP_003823598.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
WM1]
gi|302198404|gb|ADL05975.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
WM1]
Length = 353
Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 183/352 (51%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+KTE + KK D +G+ +S++ + +S+L + L F ++ +
Sbjct: 1 MA----GDSKTEKATPKKRRDERKKGHVAVSKDVVMVASLLGIFMMLKLLFPFMYKTLRN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ A + + ++ + P LL ++ + + +Q +
Sbjct: 57 YMIKYISLAPAAETLS-DYTTKAYMDTVIAVLKACFPILLAAVLLAVIATGVQTRFLFTK 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+++ P F R++ +GIK I S+ +LV +KS +KII++ I+ + + + I
Sbjct: 116 SNLAPKFDRLNPLQGIKNILSVKSLVELIKSLIKIIILILILYQIIKGDLRAVARTIDME 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + +++I + + + D + + + +++MSKQE+K+E KQ+ GNP
Sbjct: 176 LQDSAVYVLNAILEMIIKVSIVFLAIAGFDFFYQWWDFERQIRMSKQELKEEYKQTEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R ++I R R R +MM+A A +I+ NPTHYA+ALRY +++APVLVAKGQ+ +A
Sbjct: 236 EIKGRIRNIQRERARSRMMQAVPTADVIVRNPTHYAVALRYNIEKDNAPVLVAKGQDELA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ + E+ + + E LAR ++ + + IPP +Y VA+++ +Y
Sbjct: 296 LRIVAVGEENGVYVLENKPLARGIYAGTQVGAEIPPEYYGMVAEILVYVYRM 347
>gi|289678968|ref|ZP_06499858.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
syringae FF5]
Length = 329
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 90/330 (27%), Positives = 169/330 (51%), Gaps = 1/330 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S ++
Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + ++ L D S++ L + A +V+P L+ ++ + ++ +
Sbjct: 61 LMRDNF-TISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F R++ G+KR++S + LV +KSF K ++ + + L ++
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
K+R+I + I I E +LARS++ +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTEL 329
>gi|156976193|ref|YP_001447099.1| flagellar biosynthesis pathway, component FlhB [Vibrio harveyi ATCC
BAA-1116]
gi|156527787|gb|ABU72872.1| hypothetical protein VIBHAR_04964 [Vibrio harveyi ATCC BAA-1116]
Length = 375
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S +K++ A EG P ++E + LA ++ + S++
Sbjct: 1 MSE-QSSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQLNSIWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ LE+ +V L +++P + ++ GS ++ +
Sbjct: 60 VFRYNM-TLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVAFGSSMVLGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKRI+S ++V +KS VK++++ I+ L + +L +
Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + VLDI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEHSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351
>gi|237751917|ref|ZP_04582397.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
BAA-430]
gi|229376676|gb|EEO26767.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
BAA-430]
Length = 354
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 90/352 (25%), Positives = 171/352 (48%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+++KIE A EGN S + + F ++ L + F+ + + S
Sbjct: 1 MA---DDAEKTEEPTARKIEKAREEGNVLKSPDVNAFLGLVVGLALVFLCFNFWVRGLGS 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S +Q ++ + + L L+ P M+ G+ + + Q +L
Sbjct: 58 VFEQIYQSFSQE--FTRANAMSITLSLVFQVLYLLAPIFGALMLIGVIANVSQSGFLLTA 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P ++++ G+K + S+ L++ K++ I +
Sbjct: 116 KAIQPKLQKLNFITGMKNLISLKKLLDGFLITFKVLSAFIIAFFVFLGFMHELTTVALFP 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ ++L F + +D +Q++ L+MSKQE+KDE K G+
Sbjct: 176 LGDQMLWFRDKAIILIGILLAFFLVMASVDYMIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + +S+ R +MM+ A +++TNPTHYA+ALRY + AP ++AKG + +A
Sbjct: 236 QVKGKIRSLMFQAARKRMMQNIPSADVVVTNPTHYAVALRYDSKKERAPRVLAKGVDFLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++++IA EH IPI E P LAR+L+K V ++ IP Y+A+ ++ ++
Sbjct: 296 QRIKEIATEHEIPIIENPPLARALYKDVDLDMEIPESLYQAMVNVLLEVKRI 347
>gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
'morsitans']
gi|84778523|dbj|BAE73300.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
'morsitans']
Length = 387
Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + K+EAP+ +++ A EG P S+E + +L+ L +
Sbjct: 1 MAEE-SDLEKSEAPTPHRLQKARKEGQVPRSKELVSWLMLLSGWSLLWLAGGHLAQGMGL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D ++ + L A P +L + G+ ++ + +
Sbjct: 60 MLESGLTFSFHIN-GDRHWLLAQFSGLVRQALLACAPLILGVTLVAAGAPMLIGGVMFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V KR++ G+KR++S+ + F+K+ K+ LVG +L + M
Sbjct: 119 KAVSLDLKRLNPFSGLKRLFSMQMIAEFIKTLFKVCLVGGACGTALWFVWPRMTQLAQGA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
PH ++ + + + +++I+L + + DI + KL+MS+ +I++E K+ G+P
Sbjct: 179 PHRVMAESLSLISQCVLVIILALIPVVGFDILYQLFSHMKKLRMSRHDIREEYKEQEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+ + R + + +MM+ ++A ++I NPTHYA+AL+Y Q P L+AKG +A
Sbjct: 239 QLKSLIRQRQRQQAQQRMMQDVAKADVVILNPTHYAVALKYEQMRMTTPRLLAKGAGAVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+ A +H IP P LAR+LF+ I SAIP Y AVA+++ +Y +
Sbjct: 299 LNIRQRAEQHRIPTLVAPPLARALFRHCEIGSAIPVALYGAVAEVLAWVYGLR 351
>gi|28898449|ref|NP_798054.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|260365107|ref|ZP_05777678.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
gi|260876610|ref|ZP_05888965.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|260895029|ref|ZP_05903525.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|260900960|ref|ZP_05909355.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|28806666|dbj|BAC59938.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|308085922|gb|EFO35617.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|308093607|gb|EFO43302.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|308110774|gb|EFO48314.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|308111655|gb|EFO49195.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
Length = 351
Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats.
Identities = 93/347 (26%), Positives = 179/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L
Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP
Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWLASLE 345
>gi|152965635|ref|YP_001361419.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
gi|151360152|gb|ABS03155.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
Length = 360
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 6/348 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+++A +EGN P SR+ + + S A + + I S L
Sbjct: 2 SGEKTEKPTPKKLKEARDEGNIPFSRDVAAWLSTGAGAVTI----PHTIESGQVLLRKAF 57
Query: 67 ASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
A + + + + L ++ P + + S +Q +KP
Sbjct: 58 AGVGAVAADPEPARALAALAATFAGIPGVLGPLAAATVFAVVVSGGVQGTLRPAPKKLKP 117
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F ++ G K+ + L KS +K +++GT++ + + + S+L
Sbjct: 118 KFSNLNPVNGFKQHWGPQALWEGTKSLLKTVVIGTVMWLVVKNLVPQFVGSGLMPLASVL 177
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
V K++ + +L + D SY + KL+MSKQ+IK E K + G+P++K
Sbjct: 178 TLTKGAVVKIVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNAEGDPLLKGA 237
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+S + R++MM + A +++ NPTH A+ALRY AP +VAKG IA K+R+
Sbjct: 238 IRSKQMAMSRNRMMSDVASADVVLVNPTHIAVALRYEPGT-GAPKVVAKGAGAIASKIRE 296
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E+++P+ ++ LAR+++K I IPP F+ AVA+++ + + +
Sbjct: 297 KAKENDVPLVKDVQLARTMYKSCKIGQEIPPEFFAAVAKVLAFVMNLR 344
>gi|221069313|ref|ZP_03545418.1| type III secretion exporter [Comamonas testosteroni KF-1]
gi|220714336|gb|EED69704.1| type III secretion exporter [Comamonas testosteroni KF-1]
Length = 393
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE +K + +K++ +G SR+ S + + + +L P + +
Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLVLMGTQPMMNHLRE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + ++ + + + + L+ + S + + +
Sbjct: 58 AMAQQLV-FNAVTAKTPALMLERFQSMLMLGLGISVIFALVTTTASVLSGVAAGGWIFSF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S L +K I++G + ++ N + +
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFLTIVLGFVAWKYMSANIAEIASVSAQP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALAMVGSWLTTGVTLLLVVVLLVALIDVPLQAFLFKSRLKMSHEEVKQEHKESEGNP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + R + A RA ++TNPTHYA+ALRY AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPRADFVVTNPTHYAVALRYDDATMAAPQVIAKGTDLVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349
>gi|328468938|gb|EGF39898.1| translocation protein in type III secretion [Vibrio
parahaemolyticus 10329]
Length = 351
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 93/347 (26%), Positives = 179/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L
Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP
Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEMAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWLASLE 345
>gi|120613048|ref|YP_972726.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
gi|120591512|gb|ABM34952.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
Length = 390
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 161/350 (46%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ + +K + +K++ A EG A SR+ S + + + + I + +
Sbjct: 2 DSSSQDKQLPATERKLQKAREEGQAARSRDLSHIAILGMGAVSIYALAPSLIEHLQQAIA 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + ++ L ++ LL + + S + + V
Sbjct: 62 HHL-SFNAETVHATGSMLQRLQDMTFVGLAASFAFALLTTVATVASAIGSGGWIFTFKPV 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P+F R++ G ++S +V +K + ++ + ++ + + +
Sbjct: 121 MPNFTRLNPISGFANLFSKQQMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L + + + ++LL + ++D+ + S+ KMS +E+K E KQS G+P +K
Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAAIIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
RQ+ AR + +A ++ NPTHYA+ALRY + AP +V+KG +L+A K+
Sbjct: 241 GRQRQRARDIASRASLANVPKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A +H++P+ + P LAR+L+ + IP Y AVAQ++ +Y K
Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPAQLYAAVAQILAYVYRLK 350
>gi|163742549|ref|ZP_02149935.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
2.10]
gi|161384134|gb|EDQ08517.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
2.10]
Length = 359
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 87/354 (24%), Positives = 164/354 (46%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D+ K+ P+ +K+E A +G P S + ++ +S L +I + + + + +
Sbjct: 1 MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIIAIYVSGADVVEELGT 58
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L + L + + ++ +P ++ M + S + QR V
Sbjct: 59 ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P ++S+ K + + L F KS VK++L + + L M+ +
Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGVYLNYRLPDMIASSAT 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
++ + LI+ L+ + V+D + + K MS+QEI DE K++ G+
Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A + + + A ++I NPTHYA+AL++ + APV VAKG + +
Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPVCVAKGVDEV 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R++A E+ +PI +P AR+L V I I Y VA I +
Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRFAEKMR 352
>gi|328958267|ref|YP_004375653.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
gi|328674591|gb|AEB30637.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
Length = 355
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 91/354 (25%), Positives = 178/354 (50%), Gaps = 7/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVT 59
M+E D KTE S KK+ D +G P S + + + + ++ F + + YS+
Sbjct: 1 MAEKDG---KTEKASPKKLRDTRKKGEIPKSPDLTSAVTFIVFILTATFLGNYILKYSLL 57
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ L A T LE +++ + + L P L + + ++Q + +
Sbjct: 58 YLQNYLSAEFTVNGLE--NNLADIGMKSIVFVLILAGPFLAIAFAAAFIASILQTGFLFS 115
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+K +++ G K ++S L +K+ K+ LV + +L + + +L+ +
Sbjct: 116 AEPIKFKLSKINPISGFKNMFSKKTLFTMIKNVAKLTLVFWMAYKTLETSAYLILNSSNV 175
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + V ++ + + + L ++D + + + LKMSKQE+KDE K+S G+
Sbjct: 176 GTEKLFFLMSDLVLELGTQLGVLLLILGLVDYIYQVYDYRKNLKMSKQELKDEFKESEGD 235
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK++++ R + ++ AT IITNPTH A+A+RY + +++ P++VAKG +
Sbjct: 236 PQIKSQRRQRYRQLTKG-ALQDVETATAIITNPTHLAIAIRYEKGKDEVPIIVAKGADYQ 294
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y +
Sbjct: 295 AAKIRERAKAFDVPIIENKPVARAMYKTVEIGQPVPVDLYQAIAEILALVYQME 348
>gi|227873532|ref|ZP_03991777.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
gi|227840622|gb|EEJ51007.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
Length = 361
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 170/353 (48%), Gaps = 8/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTEAPS KK DA EGN SR+ + + + F + +
Sbjct: 1 MADGD----KTEAPSEKKRSDARKEGNVFQSRDIVTVAVLFGVFYAVRFMMPFIYKDLRN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +L E L + + +P LL+ + G+ + L+Q ++
Sbjct: 57 FLSYILELLD----EPSPISNKLYLRFTWLFVKSAMPLLLVTVFLGVIASLVQTRFNISF 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ +G+ RI+S N+V +K+ +KII++ + + + + + +
Sbjct: 113 KLLTPKFSKLNPMQGLGRIFSKKNVVELLKNILKIIILINFLYSIIKADIIPIAKMVHMD 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ + + + D + ++ + LKM+KQE+KDE K GNP
Sbjct: 173 IQNSSLALVSMMFDLITRVCGVFLIIALFDFMYQKWEYENNLKMTKQEVKDEYKMLEGNP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R K R+R +MM+ A +II NP H A+A++Y +N APV++AKGQ+ +A
Sbjct: 233 EIKGRMKQQMRARANQRMMQQVPDADVIIRNPEHLAIAIKYDPDKNTAPVVLAKGQDELA 292
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ + + + E LAR+++ + IP FY AVA+++ IY K+
Sbjct: 293 LRIVAVGEANGVTAIENKPLARAMYPLCHVGKEIPGDFYGAVAEILVYIYQKE 345
>gi|126730129|ref|ZP_01745941.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
gi|126709509|gb|EBA08563.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
Length = 363
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 165/354 (46%), Gaps = 1/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D K+ PS +K++ A +G P S + S L L+ +
Sbjct: 1 MADQDEAAEKSHEPSQRKLDQARKKGEIPRSTDLLTAMSYLGMLVCGTAAGGYMLSQFAE 60
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ LL + K + L + ++A V+P LL+ +F + + R
Sbjct: 61 VMLPLLEQPDRIAKGFFGGNAAPLAGSVMVAAISPVLPLLLVPGVFVLLTLFATRGFTFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
++P R++ EG K + L F KSFVK+ + ++ + L +++ +
Sbjct: 121 GTKLQPKVSRINPIEGAKNKFGRRGLFEFFKSFVKLTIYSALLAVFLQHQLDSIVGTVFG 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P + + + L++++L + +D W + K +MS++E++DE+K S G+
Sbjct: 181 TPAEAILLMTDLILRFLLVVVLIAVVIGGIDAFWQRMEHIRKNRMSQKELRDEMKDSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK ++ A+ ++M+ A ++I NPTHYA+AL++ + APV VAKG + +
Sbjct: 241 PHIKQHRRMRAQEMALNQMLPDVPDADVVIVNPTHYAIALKWSRMPGSAPVCVAKGTDHV 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R++A + +PI +P AR+LF I I Y+ VA I +
Sbjct: 301 AARIREVATDAGVPIHSDPPTARALFATTRIGDEIATEHYRPVAAAIRFAESMR 354
>gi|332531605|ref|ZP_08407502.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
gi|332038968|gb|EGI75397.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
Length = 417
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 165/350 (47%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ ++ S +K++ A +G P SR+ S + + + L+ ++ L
Sbjct: 2 ESSSQDRNLPASQRKLQRAREDGQVPRSRDFSHLAVLGGGAVTLVLTAPWIYSALRESLA 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + + D ++ L ++L+ + + + ++ + + + L V +
Sbjct: 62 RHL-SFSAADVRDPKFMLDHLHTMTLTGAGISLGIAVIIVAIAVVATLAGGGWVWTTTPL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P F R++ +G++ +++ L +K V + + + ++ + +
Sbjct: 121 APDFSRINPIKGLQGMFTKKKLAEVVKLAFIAFFVLALAAVFIYYTLPSISTLVLQPSTA 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + ++L + + ++D+ S+LKMS QE+KDE K GNP +K
Sbjct: 181 GIERMLNWLVMGCGLLLAVVLLVALIDLPLQIFLHKSELKMSLQEMKDEHKDIEGNPQMK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+R++ R + + + +A ++ NPTHYA+A++Y + AP +V+KG +L+A K+
Sbjct: 241 SRRRQKQRELAQRQSLPKVPQADFVLMNPTHYAVAVKYEEKSMAAPRVVSKGADLLAMKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R +A H +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y K
Sbjct: 301 RDLAKAHQVPVLQSPVLARALYAHAELDQDIPSTLYTAVAQVLAYVYRLK 350
>gi|163738055|ref|ZP_02145471.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
BS107]
gi|161388671|gb|EDQ13024.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
BS107]
Length = 359
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 164/354 (46%), Gaps = 3/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D+ K+ P+ +K+E A +G P S + ++ +S L ++ + + + + +
Sbjct: 1 MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIVAIYVSGADVVEELGT 58
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L + L + + ++ +P ++ M + S + QR V
Sbjct: 59 ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P ++S+ K + + L F KS VK++L + I L M+ +
Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGIYLNYRLPDMIASSAT 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
++ + LI+ L+ + V+D + + K MS+QEI DE K++ G+
Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A + + + A ++I NPTHYA+AL++ + AP+ VAKG + +
Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPICVAKGVDEV 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R++A E+ +PI +P AR+L V I I Y VA I +
Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRFAEKMR 352
>gi|253988526|ref|YP_003039882.1| type III secretion component protein sctu [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211637892|emb|CAR66521.1| type iii secretion component protein sctu [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779976|emb|CAQ83137.1| type iii secretion component protein sctu [Photorhabdus
asymbiotica]
Length = 350
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 180/343 (52%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S E +S++ L+ ++ S S L ++
Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSTEIVS-TSLILGLVGMIMVMSDYYLEHLSKLMLIP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ ++ + ++ +L L +P L + ++ + S+ Q +L+ + +KP
Sbjct: 61 ANLLEKPF--PQALNHVVENLMQELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K+ L+ T+I ++L N +L+ I+
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEGNLQGLLNLPECGSRCIIP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E IP+ + LAR+L++ I+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWL 341
>gi|153836170|ref|ZP_01988837.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
gi|149750445|gb|EDM61190.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
Length = 351
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 92/347 (26%), Positives = 179/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L
Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP
Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E P++ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPIITLMETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWLASLE 345
>gi|241763666|ref|ZP_04761716.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
gi|241367141|gb|EER61507.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
Length = 384
Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats.
Identities = 84/349 (24%), Positives = 156/349 (44%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ K+ + +K++ A +G SR+ S + + A LL + + L
Sbjct: 2 ESSQEKSLPATERKLQKAREDGQGARSRDLSHLAILGAGAACLLVLTPQLMEHMQRALGQ 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L + + ++ L + + +L + S + + + +
Sbjct: 62 QLR-FDSSTVMAPASMLTRLKDMVMVGLVASAVFAVLTSGAALISAIGAGGWIFSAKPIT 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P F R++ G ++S + N K + ++ + + + +M +
Sbjct: 121 PQFNRLNPISGAANLFSKQQMANVAKMVLMTAILSFVAWKFMGNSIDSMAMLVLQPSPLA 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L H + ++LL + V+D+ + + S+LKMS +E+K E K+S GNP K
Sbjct: 181 LRHVAQWLTSGASLLLLVVFLAAVIDVPLQAYFFKSRLKMSHEEVKQEHKESDGNPHTKG 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R + R + A +A ++ NPTHYA+AL+Y AP ++A+G +LIA K+R
Sbjct: 241 RIRQRQREMADRASVGAVPKADFVVMNPTHYAVALKYDDKTMSAPQVIARGTDLIAFKIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A H IP+ + P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 301 DLAGAHGIPVLQSPMLARALYAHAELDQAIPATLYTAVAQVLAYVYRLK 349
>gi|37527636|ref|NP_930980.1| Type III secretion component protein SctU [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787071|emb|CAE16146.1| Type III secretion component protein SctU [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 351
Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats.
Identities = 93/345 (26%), Positives = 178/345 (51%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S E +S++ LI ++ S S L ++
Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMIMVMSEYYLEHLSKLMLIP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ ++ ++ +L L +P L + + + S+ Q +L+ + +KP
Sbjct: 61 ANLLEKPF--PQAFNHVVENLMQELVYLCLPILSVSALLSLVSHFAQYGFLLSGHSIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K+ L+ T++ I+L N +L I+
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWITLAGNLQALLRLPECGTRCIVP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGIMLTQLMTVCGIGLIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M + +++I+ NPTH A+ +RY + E P++ K N A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTNAQALQVRRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ I+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDQYIPADLIQATAEVLRWLEQ 343
>gi|78045982|ref|YP_362157.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325927677|ref|ZP_08188905.1| HrcU protein [Xanthomonas perforans 91-118]
gi|78034412|emb|CAJ22057.1| HrcU protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325541878|gb|EGD13392.1| HrcU protein [Xanthomonas perforans 91-118]
Length = 357
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 62 DFSEHTR--DAAAINRALGHIGIQGLLLMLPFLAACLVAGMAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P +
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRALMPMIIGLAYETPLDVAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + +MSK E K E+K+S G+P IK+++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQRWLFIRDKRMSKDEQKREVKESEGDPEIKDKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + AIP ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEPLFETVAVVLRWV 341
>gi|197104398|ref|YP_002129775.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
HLK1]
gi|196477818|gb|ACG77346.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
HLK1]
Length = 359
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 106/349 (30%), Positives = 196/349 (56%), Gaps = 2/349 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE + +K+E A ++G+ + + S F+++ A L + S
Sbjct: 1 MSETEQS-SKTEEATPRKLEKARSQGDVAKTMDLSSFATLAAGAAALAVTGGWLARKMAS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + L + + H+ ++A+ + L + G+ ++L+Q + +
Sbjct: 60 ELLPFVERPHAIDLHGAGGV-DIARHVIMAAAPALAIVLGATAICGVAAHLMQTGLIFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP K++S G+K+I+ ++NLVNF+KS VK+I+ G + L + + + +
Sbjct: 119 EKMKPDLKKLSPIAGLKKIFGLDNLVNFLKSLVKVIVTGALGWWLLQPYIPQLAELAALD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +++ A +++++ + ++ D W ++ ++KM+++E+KD+ KQ G+P
Sbjct: 179 PLAMMPFAVDILKRLVFAVAALTLSIAGADWIWQKRRYLHRMKMTREEVKDDFKQVEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQK I +R R +MM A AT+++ NPTHYA+AL+Y +E AP+ VAKG + +A
Sbjct: 239 HVKARQKQIRFTRARQRMMAAVPDATVVVMNPTHYAVALKYDASETPAPMCVAKGLDSLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R +A E +P+ E+P LAR+L+ V I+ IPP Y+AVA++I I
Sbjct: 299 LKIRAVAEEAGVPVIEDPPLARALYAAVEIDDMIPPAHYEAVAKIIGFI 347
>gi|319405388|emb|CBI79007.1| Flagellar biosynthetic protein flhB [Bartonella sp. AR 15-3]
Length = 356
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 121/354 (34%), Positives = 200/354 (56%), Gaps = 1/354 (0%)
Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ ++KTE P+ KI +GN P SRE +F+S+++ + +F P I +T
Sbjct: 1 MSDAKPDKESKTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICVFISFPAISKLT 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L ++ + L+ + + + P L+L + I + +Q +P
Sbjct: 61 YFLVQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILILIPLLSITASAVQNVPKFI 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + R+S G RIYS LV F+KS K+I V II + ++ ++ +
Sbjct: 121 IERIRPQWSRISPANGFNRIYSKAGLVEFLKSLTKLIGVSLIIYLIFFKSNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + + L LDI WS W +L+M+KQEIK+E K GN
Sbjct: 181 DASALPKYIHKELINLSLSFTTAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++AKGQ+++
Sbjct: 241 PVVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R+IA EH+IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K
Sbjct: 301 ALHIREIAIEHDIPIFENITLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354
>gi|269963167|ref|ZP_06177502.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832131|gb|EEZ86255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 350
Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 178/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + ILA LI +LF F+ S S L +L
Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEIVSSALILA-LITVLFAFADYYMSHISALLLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D ++ + ++ L+ P +L+ + I + + Q + + VKP
Sbjct: 61 SELAYQGFQD--ALLDVAIAIAKEMVYLLAPIILVAALIAIMANMGQFGFLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + +
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLKGNLNTLLQIPTCGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + +LKM+K E+K E K+ G+P IK+++
Sbjct: 179 ITGVLIKQLMIISAVGFIVIAAADFAYQKFHHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E IP+ ++ LAR+L+ +N IP +A A+++ + +
Sbjct: 299 AKEEGIPVMQKVPLARALYSDGQLNQYIPGDLIEATAEILRWVASLE 345
>gi|260431743|ref|ZP_05785714.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415571|gb|EEX08830.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
ITI-1157]
Length = 361
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ + +K++ A +G S + S ++ I LL + +
Sbjct: 1 MSGQDDDSDKSFEATPQKLQKAREKGEVVKSNDLSAVAAYAGLTIALLAAGQYSAVHLGT 60
Query: 61 DLHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
L VL+ + + ++ LL ++LSA L+ + + + + L QR
Sbjct: 61 ALMVLVDQSPSLSSLLVEGASTGPVLGLLKAVALSAGTLLA----VPTVVVLLNLLAQRA 116
Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
V + +KP R+S+ K + L F+KSFVK+++ + + L N +L
Sbjct: 117 IVFAPSKLKPKPSRISIPSNAKNKFGRGGLFEFLKSFVKLVIYCACLALFLQANLSQILS 176
Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
+A P + + + L +++ + V+D W Y + K +MS++E++DE K
Sbjct: 177 AAAAPPRASILLMMNLLFHFLFIVVAITLAIGVIDYLWQYSEHMRKNRMSRKELQDETKD 236
Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
S G+P +K ++ A+ +MM +A ++I NPTHYA+ L++ +T APV VAKG
Sbjct: 237 SEGDPHVKQHRRQRAQEIATSQMMSDVPKADVVIVNPTHYAVVLKWDRTPGTAPVCVAKG 296
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ +A +R IA E +P+ +P AR+L V I IP +Y+ VA I
Sbjct: 297 VDEVAATIRSIAIEAGVPLHSDPPTARALHATVEIGQEIPEDYYRPVAAAIRF 349
>gi|331671779|ref|ZP_08372575.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
gi|331070768|gb|EGI42127.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
Length = 379
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI+R++S +L K VK +V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLMMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|242309640|ref|ZP_04808795.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
98-5489]
gi|239523641|gb|EEQ63507.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
98-5489]
Length = 354
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 97/352 (27%), Positives = 176/352 (50%), Gaps = 6/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTEAPS++KIE A EGN S + + F ++ L+ + F+ + +++
Sbjct: 1 MAD----EEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S Q S + + L+ L+ P ++ GI + + Q +L
Sbjct: 57 IFFQIYNSFNQDLTR--SDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTT 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P ++++ GIK I S+ L++ K++ I +
Sbjct: 115 KAIQPKLQKLNFITGIKNIISLKKLLDGFLITFKVMTAFIIAFFVFLGFMKELTTVSLFP 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ ++L F + + D +Q++ L+MSKQE+KDE K G+
Sbjct: 175 IGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP ++AKG + +A
Sbjct: 235 QIKGKIRSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++ IA EH IPI E P LAR+L+K V I+ IP Y+A+ +++ K+
Sbjct: 295 QRIKDIAKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQI 346
>gi|326319086|ref|YP_004236758.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323375922|gb|ADX48191.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 390
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 162/350 (46%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ + +K + +K++ A EG A SR+ S + + + I + +
Sbjct: 2 DSSSQDKQLPATERKLQQAREEGQAARSRDLSHLAVLGMGAVSTYALAPSLIEHLQRAIA 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + ++ L ++ +L + + S + + V
Sbjct: 62 HHL-SFNAETVLATGSMLQRLQDMAFVGVAASFAFAVLTTVAAVASAIGSGGWLFTFKPV 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P+F R++ G ++S ++V +K + ++ + ++ + + +
Sbjct: 121 MPNFSRINPLSGFSNLFSKQHMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L + + + ++LL + ++D+ + S+ KMS +E+K E KQS G+P +K
Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAALIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
RQ+ AR + ++A ++ NPTHYA+ALRY + AP +V+KG +L+A K+
Sbjct: 241 GRQRQRAREIANRASLGNVAKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A +H++P+ + P LAR+L+ + IP Y AVAQ++ +Y K
Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPSQLYAAVAQILAYVYRLK 350
>gi|254469948|ref|ZP_05083353.1| translocation protein in type III secretion [Pseudovibrio sp.
JE062]
gi|211961783|gb|EEA96978.1| translocation protein in type III secretion [Pseudovibrio sp.
JE062]
Length = 377
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + KTE P+ K+ ++ +G S E + S+ + + YL F + +
Sbjct: 1 MS-GQSSGEKTELPTPKRERESREKGQVAKSTEVTTTISLFSVIAYLWFSWDLNFSKLVG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L AT+R S + + + +V+P + + + GI +Q + +
Sbjct: 60 LMDDLADLATRRDFS--SSAGEGVFGVFSTFMDIVLPLIGVAIAAGIFGNFVQFGFLWAV 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P ++S EG KRI+S+ +V +KS +KI+L+ T++ ++ ++ +S
Sbjct: 118 DSIMPKLSKISPAEGFKRIFSLKQVVQVLKSILKIVLLSTMLYFTVKYAIGAYINSLSCG 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I + ++ +L + L + +LD + H LKM+K+E+K E K+S G+P
Sbjct: 178 IPCITNISGAIMKLILGISFLAFVGVAILDFMFQKHTHIKSLKMTKEEVKREHKESEGSP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK ++K I++ + +E T +A+ ++ NPTHYA+A+ Y E P++VAKG +L A
Sbjct: 238 EIKGQRKRISQEILMSDNLENTRKASAVVVNPTHYAVAISYRPDEVAVPLVVAKGLDLTA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
KMR A +PIF LAR L +V I IP + AVA+++ I K
Sbjct: 298 LKMRAEAEAAGVPIFANVKLARMLHAEVQIEELIPQDMFAAVAEILVWIDQNK 350
>gi|27550054|gb|AAO18037.1| LscU [Photorhabdus luminescens]
Length = 351
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 176/345 (51%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S E +S++ LI ++ S S L ++
Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMMMVMSEYYLEHLSKLMLIP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ + + ++ +L L +P L + + + S+ Q +L+ + +KP
Sbjct: 61 ANLLDKPF--PQALNHVVENLMQELVYLCLPILSVSALLSLASHFAQYGFLLSGHSIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K+ L+ T++ ++L N +L I
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWVTLAGNLQALLYLPECGEKCITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGMMLTQLMTVCGIGFIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ I+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWLEQ 343
>gi|94495442|ref|ZP_01302022.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
gi|94424830|gb|EAT09851.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
Length = 378
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK++DA +G+ SRE ++A + L I ++
Sbjct: 1 MAGGSEGGEKTEKPTPKKLQDAAKKGDILQSRELGTALVVMAGIGCLAVIGPSLIDALRD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + D S L L S + V +L + I + +
Sbjct: 61 MLVEALR-IRREDIVDFSPAKRGL-DLLASIALPVAGVMLATFLAAIAAPALLGSLGFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P ++++ G+KRI+ + L+ +KS K+ L+G+I + + + A
Sbjct: 119 GAFAPKPEKLNPLSGLKRIFGMQGLIELLKSIAKVGLLGSIGVWLIWDRLTEITGLGKAG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + + +D+ Q +L MSKQE+KDE K+S G+P
Sbjct: 179 IAPAIADVGNIFIFTCLVMAGGLFLIAGIDVPAQIMQRAKRLGMSKQEVKDEHKESEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + +A + A++IITNPTH+A+ALRY ++ APV+VAKG + IA
Sbjct: 239 ELKGHIRRRQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVAKGCDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A H + + + P LAR+++ + Y AVA ++ ++
Sbjct: 299 ASIRDLADTHGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349
>gi|21241179|ref|NP_640761.1| type III secretion system protein HrcU [Xanthomonas axonopodis pv.
citri str. 306]
gi|21106486|gb|AAM35297.1| HrcU protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 357
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|283784007|ref|YP_003363872.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
gi|282947461|emb|CBG87008.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
Length = 379
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ V + Q ++ + + + L H L ++ ++ L + S + +
Sbjct: 59 ESFVSVHQYAQ-EINNPAIVGQFLQHHLLIMAKFILTLLPMPAAALAASLIPGG-WLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +V+ +GI R++S +LV K VK +++ ++ +SL N+ + L +
Sbjct: 117 KKMLPDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLRNNFASFLGLQALW 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ V+D+ + + LKM+KQE+K+E K G P
Sbjct: 177 FKQAVSDGLALYSSVMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E + + E P LARS++ IN IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAHVLTYVLQMK 349
>gi|260429624|ref|ZP_05783601.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
gi|260420247|gb|EEX13500.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
Length = 365
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 162/354 (45%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D +KT PS +K+E+A +G P S + + L L L + +
Sbjct: 1 MAE-DDGGDKTHEPSPRKLEEARRKGEIPRSPDMLTAACYLGMLATGLALGGGSVMGFGN 59
Query: 61 DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L+ + + + + L+A V+P L + + + + R V
Sbjct: 60 ALLPLIEQPDRLVPLFFNDMASAPSGGILLAAITPVLPWLGVPALAVLLTLFATRGLVFT 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + R+S E K + L F+KS K++L ++ L+ + +
Sbjct: 120 ASKLSLKASRLSPVENAKNKFGRRGLFEFVKSLAKLVLYSVLLGFFLSTRLDEIAGIGRS 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ H + ++L + + L +D W + + +MS++E++DE K++ G+
Sbjct: 180 SAHEATALMADLMLRLLGIAAMIAVGLGTIDYLWQRAEHMRRNRMSQKELRDEYKEAEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P+ K +++ A+ ++MM A ++I NPTHYA+AL++ + +APV VAKG + I
Sbjct: 240 PMFKQHRRARAQEIAMNRMMVDVPDADVVIVNPTHYAVALKWSRQPGEAPVCVAKGVDEI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+++R+IA + +PI +P AR++ I I Y+ VA I +
Sbjct: 300 ARRIREIAADSGVPIHSDPPTARAIHATTEIGDQIAAEHYRPVAAAIRFAEDMR 353
>gi|114765217|ref|ZP_01444349.1| flagellar biosynthesis protein B [Pelagibaca bermudensis HTCC2601]
gi|114542352|gb|EAU45380.1| flagellar biosynthesis protein B [Roseovarius sp. HTCC2601]
Length = 375
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 184/358 (51%), Gaps = 5/358 (1%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M++ D DNKTE P+ +K+ A +G+ S+EA ++L+ F +
Sbjct: 1 MADQDEDKDNKTEEPTERKLRKAREKGDVASSKEAGNVMAVLSLFAITAFVLPSVSAPLA 60
Query: 60 SDLHVLLASATQR----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
+L SA Q L + + + + L+ P + L ++ + +Q
Sbjct: 61 GVFRNVLESAGQVHVGTDLSGLRDLGAVSWKVLRGVGILLGPLMALMVIGALAGVALQGE 120
Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
V+ +KP + ++S G KR++S+ V F KS K++LVG I + +
Sbjct: 121 VVVASERLKPKWSKISPISGFKRLFSLAAFVEFFKSVTKVLLVGVIAGWVVLNAVGQIWQ 180
Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
P + ++L++ L ++ + V DI W K +MS +EIKDE+K+
Sbjct: 181 TQGLVPEMVTDFIRAEAARMLLITLALVSVIAVADILWKRFDHRRKQRMSMKEIKDEVKE 240
Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+ G+P+I++++ +I R R R ++ +A RAT+++TNPTH+A+AL+Y + APV VAKG
Sbjct: 241 TEGDPLIRSKRMNIRRERARQRLAQAVPRATVVLTNPTHFAVALKYENGVDMAPVCVAKG 300
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+L+A ++R++A E+ IP+ E LAR+L ++ IP ++AVA +I I +
Sbjct: 301 ADLLAARIRELAKENEIPMVENRPLARALHDVAELDRPIPVEHWEAVAAIIGYIMDLE 358
>gi|284041540|ref|YP_003391880.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
gi|283945761|gb|ADB48505.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
Length = 358
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 167/352 (47%), Gaps = 7/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ +TE + +K +DA G S + + ++A L L + ++ +
Sbjct: 1 MADD-----RTERATPRKRDDARRRGQVARSMDVNGAVVLIAGLFALSLLGPAVVGAMET 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLN 119
+ + + + + + +L L I P + + GI + L Q +
Sbjct: 56 SMRDSFERISDPQAALTAGGLEGIAMSTLRTLALAIGPVAAVCAIAGIVANLGQVGLKPS 115
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+KP +R++ G + ++ KS VK+ ++G I+ +++ + + A
Sbjct: 116 AEALKPQAQRINPLSGARNVFGPRMFFEGAKSIVKVAVIGVIVAMAVAPKMTELSATVGA 175
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P + V + + + +D + + +L+MS Q++KDE +
Sbjct: 176 SPGQLAAELVSLVLSISQRAAIAYLVIGAIDYAYQKYTHEKQLRMSMQDVKDEFRSQQLP 235
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
+K+ Q+ + R +MM A A +++TNPTH+A+AL+Y AP++VAKGQ+LI
Sbjct: 236 AEVKSMQRRRMMQQARARMMSAVPDADVVVTNPTHFAVALKYD-GTKPAPIVVAKGQDLI 294
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A ++R++A EH++P+ E LARSL V + IP Y+AVAQ++ +Y
Sbjct: 295 ALQIRRLAAEHDVPVIENRPLARSLHATVEVGQMIPEDLYQAVAQVLAHVYR 346
>gi|289663762|ref|ZP_06485343.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668184|ref|ZP_06489259.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 357
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++DA +G+ PIS + + + +L ++ + S + + + + + +
Sbjct: 2 SDEKTEKPTEKKLQDARRDGDIPISPDVTAAAVLLGAMLVMKLAGSYFVEHMRALMQIGM 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + + L + + L++P L+ ++ G+ +Q +L V P
Sbjct: 62 D--FTENTRDATAMNRALGRIGIEGLLLMLPFLVACLLGGLIGVFLQTGMNASLKPVTPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ + +N +K VK IL+G ++ + + ++ I
Sbjct: 120 FDSLNPVNGVKKLFSLRSFINLLKLVVKAILIGVVLWLGIRALMPMIIGLAYEPTPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P +K ++
Sbjct: 180 IAWRTLGTLCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ I E S+A +++ NPTHYA+AL Y P +VAKG + A ++R
Sbjct: 240 KEFAKELIFGDPRERVSKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ V + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-VVELGDAVPESLFETVAVVLRWV 341
>gi|323210683|gb|EFZ95561.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
Length = 338
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 84/306 (27%), Positives = 164/306 (53%)
Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
++F + + + R + D + I+ + L +A ++P + ++ +
Sbjct: 1 MWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVAL 60
Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
S ++ + + ++P F +++ GIKR++S +K+ +K LVG + L
Sbjct: 61 ISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLW 120
Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
N+ M+ ++ +P + +A V ++++L + + D+ + KL+MS+Q
Sbjct: 121 HNWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQ 180
Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
+I+DE K+S G+P +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + +
Sbjct: 181 DIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMS 240
Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
AP +VAKG LIA ++R+I EH +P E P LAR+L++ I IP Y AVA+++
Sbjct: 241 APKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 300
Query: 348 KIYHKK 353
++ K
Sbjct: 301 WVWQLK 306
>gi|260466631|ref|ZP_05812819.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
WSM2075]
gi|259029637|gb|EEW30925.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
WSM2075]
Length = 360
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 133/353 (37%), Positives = 220/353 (62%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+KTE + KKI D + +G P SRE +L +S +A L++ +F+ I +
Sbjct: 1 MSDAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALLASFVAILVFTVFYAKDAIIDLGM 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L ++ + ++ L + L R ++ L+L + GIG+ ++Q +P +
Sbjct: 61 FLATFLEKPEAWPMDTETDVIALYKLVMLEVGRALVSLLVLLSVAGIGASVLQNMPQIVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R+S+ +G R++ + V F+KS K+ +++ +L+E++ +L + N
Sbjct: 121 ERIRPQFSRISIVKGWNRMFGVQGWVEFLKSLGKVGFAIAVLSFTLSEDHRKLLAGMITN 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK
Sbjct: 301 LKIREIAREHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353
>gi|153832518|ref|ZP_01985185.1| VscU [Vibrio harveyi HY01]
gi|156974012|ref|YP_001444919.1| Type III secretory pathway, component EscU [Vibrio harveyi ATCC
BAA-1116]
gi|41834187|gb|AAS13325.1| VscU [Vibrio harveyi]
gi|148871313|gb|EDL70185.1| VscU [Vibrio harveyi HY01]
gi|156525606|gb|ABU70692.1| hypothetical protein VIBHAR_01723 [Vibrio harveyi ATCC BAA-1116]
Length = 349
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 96/347 (27%), Positives = 179/347 (51%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + ILA LI +LF F+ S S L +L
Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILA-LIAVLFAFADYYMSHISALLLLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D ++ + ++ L+ P L++ + I S + Q + + VKP
Sbjct: 61 SELAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + +
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V++++I+ + + D + +LKM+K E+K E K+ G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+E IP+ ++ LAR+L+ +N IP +A A+++ + +
Sbjct: 299 AHEEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEILRWVASLE 345
>gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
6192]
gi|306532342|gb|ADN01876.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
6192]
Length = 387
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 6/348 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ KI A EG + E +L LI L S ++ S
Sbjct: 32 EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+S + + +H +L +P ++ + G+ ++Q + + + P
Sbjct: 92 FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALCAGVAGNVLQVGFLFTVKPITP 148
Query: 126 SFKRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R+ + KR+ +S L N K+ +K+ +G + +++ +++ +
Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+ V ++L + ++++D + Q LKMS++E+K+E K G+P++
Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
MR IA EH +P+ E LAR+L+++V + IP +Y VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQEVEVGDTIPEQYYAVVATILAKVY 376
>gi|220925376|ref|YP_002500678.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
2060]
gi|219949983|gb|ACL60375.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
2060]
Length = 353
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 180/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + +++TE P+ K+++DA+ G+ S E + + + LL
Sbjct: 1 MAGDTEQEDRTEEPTLKRLDDAIKRGDVATSVEVNTLFLLGGFTLVLLVAAGSAARGFAL 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
D+ LAS D + + + V + + G+ L+Q V
Sbjct: 61 DMRGFLASLHAVP-SDAAAYQAVARRALAALGLAVAVPVGAAVAAGLAGGLLQHPFVWTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++RVS G++R++ F K VKI LVGT+ + L + + F +
Sbjct: 120 ETLSAKWERVSPLAGLRRLFGPEAWFQFGKGLVKIALVGTVAGLVLWGDRDRLEAFARLD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +IL V +++ IL L + D + +W ++L+M++ EIK+E+K+S GNP
Sbjct: 180 PAAILPATLVLVLRLMAGILAAYVVLALGDAVYQRLRWRARLRMTRTEIKEELKESDGNP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + +R R +MM A AT+++ NPTH+A+ALRY APV VAKG + +A
Sbjct: 240 EVKARLRQLRHARARKRMMAAVPTATVVVANPTHFAVALRYETG-MAAPVCVAKGVDALA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R+IA + +P+ E P LAR+L V I++AIP YKAVA++I + ++
Sbjct: 299 LRIREIAGANGVPVVENPPLARALHATVEIDAAIPTEHYKAVAEVIGFVLRQR 351
>gi|219681611|ref|YP_002467997.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682168|ref|YP_002468552.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471297|ref|ZP_05635296.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219621901|gb|ACL30057.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624454|gb|ACL30609.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085981|gb|ADP66063.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311087137|gb|ADP67217.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087673|gb|ADP67752.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 383
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 101/346 (29%), Positives = 180/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ +I +G SRE S +L I L ++ + + + +
Sbjct: 7 EEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMSDSFL 66
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L + ++++ +L L P L+ ++ I ++ LN + +F
Sbjct: 67 FESNDFLNNNNNLLKILMSLK-EILFSFFPFLISLLIVIIIPPILFSGISLNFRSLTLNF 125
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G KR++S +V F K +K+ +V I L ++ +L ++AN S L H
Sbjct: 126 SKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVSSLSH 185
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + +++L + + DI W +Y KLKM++QE+KDE+K+ GNP IK R +
Sbjct: 186 GYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIKMRIR 245
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K++ +A
Sbjct: 246 QAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKIQNLA 305
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+HNI I PSLARSL++ I IP YKAVA+++ ++ +
Sbjct: 306 LKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351
>gi|218887500|ref|YP_002436821.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218758454|gb|ACL09353.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 346
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 168/344 (48%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P+ K++ +A +G+ S++ ++LA YL + + + +
Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYLAIKGGDIFAEIMAVTELSMRQ 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L + L T ++ A +V+P + L M G+ + L Q + L P +
Sbjct: 63 MS---LPFDQALPLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAAMPKLE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+S + K+++S+ N V +K+ +K+ ++G + L+++ + +L
Sbjct: 120 NMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGGLLTVL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
T R +++ + LD + Q+ + M+K E+K E K+ G+P IK ++K
Sbjct: 180 GITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + I + +A +I+TNPTHYA+AL Y + PV++AKG+ L+AK+M +IA
Sbjct: 240 LHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRMVEIAR 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E IP+ + LARSLF + N+ IP VA+++ +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVLRWVQSL 343
>gi|294013056|ref|YP_003546516.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
gi|292676386|dbj|BAI97904.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
Length = 392
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 83/351 (23%), Positives = 168/351 (47%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ + S++
Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGPSMVESLSD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + + LS A V +L ++ I +
Sbjct: 61 MLIEALR-FRREDIVNFAPADRGFALLSGIALP-VAGIMLATLLAAIAGPAMLGSLGFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + L+ +KS K+ L+G I +++ ++ +
Sbjct: 119 GAFAPKASKLNPAAGLKRMFGMQGLIELVKSVAKVSLLGAIGVWMISDRLTEIVGLGKSG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + + +D+ Q +L MSKQEIKDE K+S G+P
Sbjct: 179 LAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + +A + A++IITNPTH+A+ALRY ++ APV+VA+G + IA
Sbjct: 239 ELKGHIRRKQYEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R++A ++ + + + P LAR+++ + Y AVA ++ ++
Sbjct: 299 AAIRELADQNGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349
>gi|323341371|ref|ZP_08081615.1| flagellar biosynthesis/type III secretory pathway protein
[Lactobacillus ruminis ATCC 25644]
gi|323091248|gb|EFZ33876.1| flagellar biosynthesis/type III secretory pathway protein
[Lactobacillus ruminis ATCC 25644]
Length = 355
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 2/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
D KTE P+ K+I D+ G S + ++ + + I +
Sbjct: 3 DKDGKTEKPTPKRIRDSRKRGEVAKSPDVVAAVALFVFAMLFVPLCEFSINHFSPYFVNY 62
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L + I + + L + P +L+ ++ GI ++Q + +KP
Sbjct: 63 LEMLANPD-QMIGSLGKIAFQAILMIFIMTGPFMLIAIVIGIVGNIVQVGLLFTATPLKP 121
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
FK+++ G+K+++S+ L N KS VK+I+VG + E T+ +L
Sbjct: 122 DFKKLNPLNGLKQMFSLRALQNLAKSLVKLIIVGYLCYKKYVETIPTLTSLSEVGTGKVL 181
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + I + + ++V D + + LKMSKQEIKDE+KQ G+P +K +
Sbjct: 182 LFMLNICKDLATQIGILLVVVSVFDYAFQRYTHMKSLKMSKQEIKDEMKQMEGDPQVKAQ 241
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+K+ R IR+ + AT+++ NPTH A+A++Y P ++AKG + +A ++++
Sbjct: 242 RKAKHREMIRNAV-AQVKDATVVLANPTHLAIAIKYDAEGAGVPQVLAKGADDVAMRIKE 300
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + N+PI E LAR+L+ +V IP FY+A+A++I +Y +
Sbjct: 301 EAKKQNVPIIENKPLARALYPKVDAGDFIPVEFYEAIAEVIALVYKLE 348
>gi|319764528|ref|YP_004128465.1| type iii secretion exporter [Alicycliphilus denitrificans BC]
gi|330826744|ref|YP_004390047.1| type III secretion exporter [Alicycliphilus denitrificans K601]
gi|317119089|gb|ADV01578.1| type III secretion exporter [Alicycliphilus denitrificans BC]
gi|329312116|gb|AEB86531.1| type III secretion exporter [Alicycliphilus denitrificans K601]
Length = 386
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 162/349 (46%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +K + +K++ A ++G A SR+ S + + + LL + + L
Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGTGALALLVLAPWFVEYLQRALRQ 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L ++ ++ L ++ LL + S + + +L +
Sbjct: 62 QLV-FNAATVQMPGEMLSRLRTMAGVGLLASAAFALLTSGAALLSAIGAGGWIFSLKPIT 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P F R++ G ++S + N K + ++ + + + M +
Sbjct: 121 PQFNRLNPLSGFANLFSKQQMANVAKMVLMTGILAAVAWNFMGRSIEQMAALVLQPSPLS 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L HA + + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K
Sbjct: 181 LRHAGQWIVSGMSLLLLVVFLFAVIDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
RQ+ AR + A +A ++ NPTHYA+AL+Y + AP +V+KG +L+A ++R
Sbjct: 241 RQRQRAREIADRASIAAVPKADFVVMNPTHYAVALKYDEASMGAPQVVSKGTDLLAFRIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A +H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K
Sbjct: 301 ELAQQHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349
>gi|13472564|ref|NP_104131.1| flagellar biosynthesis protein FlhB [Mesorhizobium loti MAFF303099]
gi|14023310|dbj|BAB49917.1| flagellar biosynthetic protein; FlhB [Mesorhizobium loti
MAFF303099]
Length = 360
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 130/353 (36%), Positives = 218/353 (61%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+KTE + KK+ D + +G P SRE ++ +S +A L++ +F+ + ++
Sbjct: 1 MSDAADKDSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGM 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + L + + ++ L + L R V+ L+L + GIG+ ++Q +P
Sbjct: 61 FLSMFLEKPEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S+ +G R++ V F+KS K+ ++T +L+E++ +L + N
Sbjct: 121 ERIRPQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITN 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +L+ I+ + + +DI WS W L+M+KQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK
Sbjct: 301 LKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353
>gi|224419239|ref|ZP_03657245.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
98-5491]
gi|253826957|ref|ZP_04869842.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313142741|ref|ZP_07804934.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
98-5491]
gi|253510363|gb|EES89022.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313131772|gb|EFR49389.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
98-5491]
Length = 357
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 176/352 (50%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KTEAPS++KIE A EGN S + + F ++ L+ + F+ + +++
Sbjct: 1 MADE---EEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSA 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ Q S+ + L L L+ P M+ GI + + Q +L
Sbjct: 58 IFFEVYHIFNQDLTR--SNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFLLTT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P ++++ G+K I S+ L++ K++ I +
Sbjct: 116 KAIQPKLQKLNFISGLKNIISLKKLLDGFLITFKVLTAFIIAFFVFLGFMKELTTVSLFP 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ ++L F + + D +Q++ L+MSKQE+KDE K G+
Sbjct: 176 IGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP ++AKG + +A
Sbjct: 236 QVKGKIRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++++IA E+ IPI E P LAR+L+K V I+ IP Y+A+ +++ K+
Sbjct: 296 QRIKEIAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQI 347
>gi|59889759|emb|CAH19114.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
coli]
gi|284920023|emb|CBG33079.1| lateral flagellar export/assembly protein (FlhB-like) [Escherichia
coli 042]
Length = 379
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F V
Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ +++ + I L H L + ++ L + + S L+ +
Sbjct: 60 SFISV--HQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALL-SSLVPGGWLFLP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F ++S +GI+R++S +L K VK +V ++ +SL N+ L +
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ V+ ++ +LD+ + + LKM+KQ++K+E K G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQKLKEEYKNQEGKP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E + + E P LARS++ +N IP Y+A+A ++ + K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349
>gi|323139657|ref|ZP_08074699.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
gi|322395089|gb|EFX97648.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
Length = 356
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 114/349 (32%), Positives = 201/349 (57%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+D P+++TE + KKI D + +G P SR+ I A L F +
Sbjct: 1 MSESDDPESRTEEATEKKIRDTVEQGKLPSSRDVGTAFGIFALLGAFSFLVDALTPRLIE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +L+A+ + L + ++ ++L R + P LL F++ G+ + Q P
Sbjct: 61 ALGLLIANVGELPLRSGADAYRYVSVVNLELGRYLGPILLGFVIAGLVASFTQGAPQFVF 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ V+P R+S+ G KRI+ + +V +KS VK+I+VG + + ++ ++D + +
Sbjct: 121 DRVQPDLSRISIIAGWKRIFGLAGVVELLKSVVKMIIVGGAVIFAGLSDHAALVDAMRTD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + + ++ + + L D W+ +W L+MS+QE+K+E KQ+ G+P
Sbjct: 181 PSRLPGLTLRLIIHLTSVVAISVGVLAAADFVWARFKWRRDLRMSRQELKEEFKQAEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R +S+A R R +MM + AT ++ NPTHYA+ALRY++ E AP+++AKG++LIA
Sbjct: 241 LVKARMRSLAMDRSRRRMMASVPNATFVVANPTHYAIALRYVREEGGAPLVLAKGKDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K+R+IA +N+P+FE+ LAR+++ V ++ IP FY+ VA+LI+ +
Sbjct: 301 LKIREIAERNNVPVFEKKELARAMYDMVEVDRMIPAEFYRPVAELIHFL 349
>gi|15616856|ref|NP_240069.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386798|sp|P57334|FLHB_BUCAI RecName: Full=Flagellar biosynthetic protein flhB
gi|25322197|pir||C84958 flagellar biosynthetic protein flhB [imported] - Buchnera sp.
(strain APS)
gi|10038920|dbj|BAB12955.1| flagellar biosynthetic protein flhB [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 383
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 100/346 (28%), Positives = 180/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ +I +G SRE S +L I L ++ + + + +
Sbjct: 7 EEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMSDSFL 66
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L + ++++ +L L P L+ ++ I ++ LN + +F
Sbjct: 67 FESNDFLNNNNNLLKILMSLK-EILFSFFPFLISLLIVIIIPPILFSGISLNFRSLTLNF 125
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G KR++S +V F K +K+ +V I L ++ +L ++AN S L H
Sbjct: 126 SKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVSSLSH 185
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + +++L + + DI W +Y KLKM++QE++DE+K+ GNP IK R +
Sbjct: 186 GYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMRDELKEKEGNPNIKMRIR 245
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K++ +A
Sbjct: 246 QAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKIQNLA 305
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+HNI I PSLARSL++ I IP YKAVA+++ ++ +
Sbjct: 306 LKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351
>gi|163800125|ref|ZP_02194026.1| flagellar biosynthetic protein [Vibrio sp. AND4]
gi|159175568|gb|EDP60362.1| flagellar biosynthetic protein [Vibrio sp. AND4]
Length = 375
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +K+E S +K++ A EG P ++E + LA ++ + S++
Sbjct: 1 MSE-QSSQDKSEKASQQKVKKARQEGQIPRAKEFTTALIFLAVTMFFYSQLNSTWESMSG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + T+ LE+ +V +++P + ++ GS ++ + L
Sbjct: 60 VFRYNM-TLTKADLENPKQLVEHFGQSLAVLIEMLLPLFTVIIIVTCGSSMVLGGWMFRL 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P +++ GIKRI+S +LV +KS VK++++ I+ L + +L +
Sbjct: 119 ASVMPKLSKLNPISGIKRIFSTRSLVELVKSTVKVLVIFGILYGYLNSHLQPLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + + +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTH+A+AL+Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHFAVALKYEPSLSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I AIP Y A+A ++ + K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAIAHILTYVLQLK 351
>gi|83944181|ref|ZP_00956637.1| flagella-associated protein [Sulfitobacter sp. EE-36]
gi|83955118|ref|ZP_00963774.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
gi|83840447|gb|EAP79620.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
gi|83845048|gb|EAP82929.1| flagella-associated protein [Sulfitobacter sp. EE-36]
Length = 375
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 99/357 (27%), Positives = 179/357 (50%), Gaps = 4/357 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN KT P+ KK++DA +G+ P S+E ++A L +
Sbjct: 1 MAENSDSTEKTLEPTEKKLKDARKKGDVPSSKETGNMVVVVAMLGIAALVLPYQAPQIVV 60
Query: 61 DLHVLLASATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
L VLL + + + +++ V+P + + G +IQ
Sbjct: 61 ALSVLLDHSPNLMVATGEPGVIRLGQIMSEFFYMIVWAVLPIFGVLFLGGAIGAVIQGET 120
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
V+ +KP ++S EG+KR++S N LV F KS VK++ +G + E +
Sbjct: 121 VVAAERIKPKLSKLSPLEGLKRLFSANALVEFAKSIVKVLAIGGLAVWFTNEAVRRIWTS 180
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
P + + K+LI + + + + DI W W K +MS+++IKDE K+S
Sbjct: 181 SGFIPEHLPGYLTAAAVKLLIAAAILLVPIAIADILWRRFDWRRKQRMSQKDIKDEHKES 240
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P I+ ++ R + + + A A +I+TNPTHY++AL+Y ++ APV +AKG
Sbjct: 241 EGSPEIRQKRARRRRELSQQRTITAVPLADVILTNPTHYSIALKYDPAQDMAPVCIAKGA 300
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A+++R++A EH+IP+ E L R L+ ++ ++ IP ++ VA++I ++ +
Sbjct: 301 DHLARRIREVAAEHDIPMIENKPLTRMLYDEIDVDQVIPVAHWEIVAEIISFVFDLR 357
>gi|303248000|ref|ZP_07334266.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
gi|302490557|gb|EFL50462.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
Length = 357
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 87/355 (24%), Positives = 169/355 (47%), Gaps = 6/355 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + + KTE + K+ + A +G+ S+E + + A L + +
Sbjct: 1 MARDPS---KTEQATQKRRDKAREKGSVARSQELPKLTVLFAGLFVIRLTIRSLGDDLKE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + + L LS + +++P L++ + + IQ + +
Sbjct: 58 VFTLFLGQRLHFEA-TVDAVNALFWMLSGKLAMMLLPLLVVIAIIAFITQRIQVGSIWHS 116
Query: 121 NHVKPSFKRV-SLREGI-KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+P F + + + K + + LV K + + + + L
Sbjct: 117 KLFEPDFSNLFNPIAALQKLLINPKTLVQLGKQVAMASAIAVAPYLIIKNKFNEFLPLFY 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ S+ +++ L + + VLD+ ++ + LKM+K E+KDE KQ+ G
Sbjct: 177 QSTQSLTTFLLENGFTMVLYTLFPMVLIAVLDVWYTRWDYEENLKMTKDEVKDETKQALG 236
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P++K +Q+ ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG +
Sbjct: 237 DPVVKQQQRRKMMEVMQRRMLQDVPKADVVITNPTHLACALRYDPKESPAPLLLAKGADH 296
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A+K+++IA E+ IPI E LA++L+K V I IP Y+AVA ++ ++ K
Sbjct: 297 LAEKIKEIARENRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351
>gi|284989537|ref|YP_003408091.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
gi|284062782|gb|ADB73720.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
Length = 377
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 166/352 (47%), Gaps = 4/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ KTE P+ ++++ A EG P ++E + A L V +
Sbjct: 1 MAKDGPGGEKTEDPTPQRLKKARKEGQIPRTQELGTWVGAAAASFLLPMLVRNAFDQVGA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A ++E + LL + + +P + M+ G+ + Q ++
Sbjct: 61 MFVQVGAVVETPEVE---AVTALLGQALDTFVTVALPMAVALMVVGVAASAAQGGVTVSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP+ K+++ G+KR++ + L K+ +K +GT++ ++ + +
Sbjct: 118 KPMKPTLKKLNPFPGMKRMFGGHGLWEATKAVIKTAALGTVVVVTSDRAQQLVSSAGALP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+I + ++ ++ + + V D + +L+M+K EI+ E K S G+P
Sbjct: 178 LSAITATFTDSAVLMIRVVAVTGLVIAVADYVIVRKRTMKELRMTKYEIQQEHKNSEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++++ + R++MM + A +++ NPTH A+AL+Y AP +VAKG + +A
Sbjct: 238 HVKAQRRATQMAMSRNRMMAEVADADVLLVNPTHVAVALKYEPDR-GAPRVVAKGADEVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+ A E +P+ ++ LAR+L I +P + AVA+++ +
Sbjct: 297 AKLRERAAEARVPLVQDVPLARALHASCEIGQEVPAQLFTAVARVLAFVMQL 348
>gi|296282253|ref|ZP_06860251.1| flagellar biosynthesis protein FlhB [Citromicrobium bathyomarinum
JL354]
Length = 374
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 167/353 (47%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE KT AP+ K++ DA N+G+ S++ + +L +L F + +++
Sbjct: 1 MSE--TAGEKTFAPTEKRLRDAANKGDVLRSKDLGTAAVMLVGAAWLAFAGPWLLSEISN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + ++ L+ +A + + ++ + S L
Sbjct: 59 LLRESFQFDSSEIVDFRPD--RLMIEGLTAALPPIFALAVPVIIVTLLSQLAFGRGRFVA 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+++ R++ G+KR++ N L+ K +K++L+G + + + +Y +L N
Sbjct: 117 KNLEFKHTRINPASGLKRMFGPNGLIEMGKGILKVVLLGGLAALWWSYSYENLLGLGRGN 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A+++V + +++ + + +D+ + + KLKMS QE+KDE K+S G+P
Sbjct: 177 LSQQLTTAWWSVISLFLVLCGGLVVIAAVDLPIQWVRRNKKLKMSHQEMKDENKESEGSP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
K+ ++ R + A A +ITNPTH+A+AL Y + AP+++AKG+ A
Sbjct: 237 EAKSARRQRQRDIAAGSVSGAMREAQFVITNPTHFAVALSYDPEKASAPIVLAKGRGEKA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
M+++A E +P E P LARS++ I Y A+A ++ + K
Sbjct: 297 LAMKELAREFGLPTLEYPQLARSVYFTSRERQVICEDLYGAIAAVLAYVLSLK 349
>gi|311086556|gb|ADP66637.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 383
Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats.
Identities = 101/346 (29%), Positives = 180/346 (52%), Gaps = 1/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+ KTE P+ +I +G SRE S +L I L ++ + + + +
Sbjct: 7 EEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGSINLWWYRDLIVLNFSKIMSDSFL 66
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L + ++++ +L L P L+ ++ I ++ LN + +F
Sbjct: 67 FESNDFLNNNNNLLKILMSLK-EILFSFFPFLISLLIVIIIPPILFSGISLNFRSLTLNF 125
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G KR++S +V F K +K+ +V I L ++ +L ++AN S L H
Sbjct: 126 SKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVSSLSH 185
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + +++L + + DI W +Y KLKM++QE+KDE+K+ GNP IK R +
Sbjct: 186 GYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIKMRIR 245
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K++ +A
Sbjct: 246 QAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKIQNLA 305
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+HNI I PSLARSL++ I IP YKAVA+++ ++ +
Sbjct: 306 LKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351
>gi|269105053|ref|ZP_06157748.1| type III secretion inner membrane protein HrpY [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268160688|gb|EEZ39186.1| type III secretion inner membrane protein HrpY [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 352
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 89/347 (25%), Positives = 173/347 (49%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + ILA + L F + +++ L +
Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILALVAVLFAFADYYMSHISALLLLPS 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q + + + + L+ P L++ + I S + Q + + VKP
Sbjct: 62 ELAYQGFQDALLDVAIAIAK---EMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L +N T+L + +
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRDNLNTLLQIPACGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V++++I+ + + D + +LKM+K E+K E K+ G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A+E +P+ ++ LAR+L+ +N IP + A+++ + +
Sbjct: 299 AHEEGVPVMQKVPLARALYADGQLNQYIPGDLIETTAEILRWVASLE 345
>gi|319403947|emb|CBI77535.1| Flagellar biosynthetic protein flhB [Bartonella rochalimae ATCC
BAA-1498]
Length = 356
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 123/354 (34%), Positives = 200/354 (56%), Gaps = 1/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T
Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L ++ + L+ L S + P L+L + I + +Q +P
Sbjct: 61 YFLIQWLERPESWRINTAEDVKHLIYLLGGSVGLALAPILILIPLLSITASAVQNVPRFV 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + R+S G KRIYS LV F+KS K+I V II I ++ ++ +
Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYIIFFKSNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + + + L LDI WS W +L+M+KQEIK+E K GN
Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++AKG +++
Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K
Sbjct: 301 ALHIREIAIEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354
>gi|307293817|ref|ZP_07573661.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
gi|306879968|gb|EFN11185.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
Length = 379
Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats.
Identities = 83/351 (23%), Positives = 167/351 (47%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ + S++
Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGPSVVRSLSD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + + + LS A V +L ++ I +
Sbjct: 61 MLTEALR-FRREDIVNFAPADRGFALLSGIALP-VAGIMLATLLAAIAGPALLGSLGFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P +++ G+KR++ + L+ +KS K+ L+G I + + ++ +
Sbjct: 119 GAFAPKASKLNPAAGLKRMFGMQGLIELVKSIAKVSLLGAIGVWMIWDRLTEIVGLGKSG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + + +D+ Q +L MSKQEIKDE K+S G+P
Sbjct: 179 LAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + +A + A++IITNPTH+A+ALRY ++ APV+VA+G + IA
Sbjct: 239 ELKGHIRRKQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R++A ++ + + + P LAR+++ + Y AVA ++ ++
Sbjct: 299 AAIRELADQNGVTVLQYPDLARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349
>gi|21672516|ref|NP_660583.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008464|sp|Q8K9S1|FLHB_BUCAP RecName: Full=Flagellar biosynthetic protein flhB
gi|21623138|gb|AAM67794.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 381
Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D + KTE P+ I+ +G SRE + ++ L L + I+ + + +
Sbjct: 3 HDINEEKTEQPTEHHIKKFRKKGETRYSRELNSLLILIFGLSNLWWSRYSIIFELKTIMF 62
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q L + +I + P + I ++ N +
Sbjct: 63 NSF-NFNQNILTNQQNISLNFFFFIKKILIVFFPFFSFLICIIIIPPILFGGIKFNFTSL 121
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K +F R++L G+K+ +S + K+ +K+ ++ I L ++ +L + N S
Sbjct: 122 KLNFARLNLLHGLKKFFSFQIFIELFKTTLKLFIISCISIFYLWIYFYKILFLSTKNISS 181
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L F + I+I+L + + +LD+ W +Y KLKM+ QEIKDE K+ G+P IK
Sbjct: 182 SLLDGFNVIFYCCILIILGLIPIVILDVFWRQWSYYKKLKMTHQEIKDEFKEREGSPQIK 241
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + +R +M+ +A +IITNP HYA+AL+Y + +AP ++AKG A K+
Sbjct: 242 ARIRQQMKINLRRRMISDVPKADVIITNPIHYAIALKYDIHKMNAPKVIAKGIGATAMKI 301
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+KIA ++ I I PSLAR+L++ I IP YKAVA+++ ++ K
Sbjct: 302 QKIALKNGIAIIASPSLARALYRYSEIGQYIPGPLYKAVAEILAWVWKVK 351
>gi|319406964|emb|CBI80601.1| Flagellar biosynthetic protein flhB [Bartonella sp. 1-1C]
Length = 356
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 124/354 (35%), Positives = 201/354 (56%), Gaps = 1/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T
Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L ++ + L+ L SA + P L+L + I + +Q +P
Sbjct: 61 YFLIQWLERPESWRINTAEDVKHLIYLLGGSAGLALAPILILIPLLSITASAVQNVPKFV 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + R+S G KRIYS LV F+KS K+I V II + ++ ++ +
Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYMIFFKSNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + + + L LDI WS W +L+M+KQEIK+E K GN
Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K R +S++R RIR +M+ AT+IITNPTH+++ALRY + APV++AKG +++
Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIITNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K
Sbjct: 301 ALHIREIAVEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354
>gi|90577372|ref|ZP_01233183.1| flagellar biosynthetic protein [Vibrio angustum S14]
gi|90440458|gb|EAS65638.1| flagellar biosynthetic protein [Vibrio angustum S14]
Length = 375
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + +KTE + +KI A +G P +++ + + +A +++ F ++ +
Sbjct: 1 MS-QSSAQDKTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQIDAIWQAL-N 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L + L +L++P L ++ I S L+ +
Sbjct: 59 GVFKLNMTISHDGLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L +
Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDANLSRLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLILTILFHGILLMGVALLLFGLIDIPYQKWEHAKELKMTKQELKEEFKSNEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R K+ +A +A ++I NPTHYA+A++Y T ++AP +VAKG + A
Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ IA +H++ I P L R+++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351
>gi|294625836|ref|ZP_06704452.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292599864|gb|EFF43985.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 357
Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats.
Identities = 89/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DAL +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDALRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|46562156|ref|YP_009141.1| hrpY/hrcU family type III secretion protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|46447693|gb|AAS94359.1| type III secretion protein, hrpY/hrcU family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235485|gb|ADP88338.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
vulgaris RCH1]
Length = 346
Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats.
Identities = 84/344 (24%), Positives = 166/344 (48%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P+ K++ +A +G+ S++ ++LA Y F S+ + +
Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
E + + + H +A +V+P + L MM L Q + P +
Sbjct: 63 MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E IP+ + LARSLF + N+ IP VA+++ +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSL 343
>gi|239907023|ref|YP_002953764.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
gi|239796889|dbj|BAH75878.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
Length = 357
Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats.
Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 6/349 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + + KTE + K+ A +G+ P S+E + ++A L + F +
Sbjct: 1 MARDPS---KTEKATPKRESKAREKGSVPRSQELPKLTVLMAGLFTVRFTLGNINEQLQE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + L+ LS + +++P LL+ + + +Q V
Sbjct: 58 VFRTFLGGRLDFTATT-DDVAALMWSLSAKLAIMLLPLLLVMAVVAFVTQRLQVGEVWRP 116
Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+P F + + G++R+ S LVN K + + + L + + L
Sbjct: 117 KIFEPDFSNIVNPMRGLQRLLISAQTLVNLAKQTAMAFAISLVPYLILRKRFNEFLPLFY 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ +I +++ LL + + +LD+ ++ + LKM+K E+KDE KQS+G
Sbjct: 177 QSVDNIALFLLDNGFDMVLYTLLPMFVIAILDVWYTRWDYAENLKMTKDEVKDEHKQSFG 236
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P +K +QK ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG +
Sbjct: 237 DPHVKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHIACALRYNPLESPAPMLLAKGADF 296
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+A+K++ IA EH +PI E LA++L+K V I IP Y+AVA ++
Sbjct: 297 MAEKIKDIAKEHKVPIRENKPLAQALYKNVEIGQVIPEDLYQAVASILA 345
>gi|269796379|ref|YP_003315834.1| flagellar biosynthesis protein FlhB [Sanguibacter keddieii DSM
10542]
gi|269098564|gb|ACZ23000.1| flagellar biosynthesis pathway, component FlhB [Sanguibacter
keddieii DSM 10542]
Length = 422
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 4/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS KTE + K+++ +G S++ S + I A + L G +
Sbjct: 1 MSGGGDSGEKTEQATPKRMKQNRKDGALQRSQDLSAWLGIGAAAVMLPVALGRGAEAAVD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + D +V LL S + P L++ ++ + + Q +
Sbjct: 61 QLSAVREIISNP---DPLVVVDLLGTGMDSILTSLTPLLVVVVLAAVVGNVSQGGLHVAT 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F +L +GIK + L +K+ K ++VG ++ I++ +L +
Sbjct: 118 KKLKPKFDHFNLVKGIKNTFGGQALWQGVKALAKTLVVGLVLYIAIQNLMPVLLTAGGLS 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L A ++ +L + L +LD+ + K +MSK E+K E KQS G+P
Sbjct: 178 VGALLSAAGGGIQALLWSAVAAGIALAILDLVVVMKRNRKKTRMSKYEVKQENKQSEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +S + R++M+ + A +++ NPTH A+AL+Y AP +VAKG +A
Sbjct: 238 QLKGAIRSKQIAMSRNRMIASVGDADVVLVNPTHVAVALKYEAGT-GAPRVVAKGAGHVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A E ++P+ + LAR+L I IP Y AVAQ++ + K
Sbjct: 297 ARIREVAAEKSVPMISDVPLARALHGACEIGEEIPADLYAAVAQVLAFVMALK 349
>gi|254464574|ref|ZP_05077985.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
gi|206685482|gb|EDZ45964.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
Length = 362
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 93/354 (26%), Positives = 164/354 (46%), Gaps = 1/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ P+ +K+ A +G S + S+ ++ L +I S + + +
Sbjct: 1 MSGQDDDSDKSFEPTEQKLRKAREKGEVAKSTDLSVAAAYLGLIIAFYTAGSSSVEGIGT 60
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L + L + SA R V+P L+ + S + QR V
Sbjct: 61 ALMAYLDQPDRLAPLFFEGPAAAPVGGFIGSAFRPVLPWFLVPFALVLLSIVGQRAMVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P R+S+ K + L F KSFVK+ L + + L+ M+
Sbjct: 121 PSKLEPKLSRISIVSNAKNKFGRAGLFEFFKSFVKLSLYSVCLGVYLSHRLPEMIASSGT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P S++ + L + L+ + V+D + + + K MS++EI+DE+K + G+
Sbjct: 181 GPQSVVLMLAQLSMEFLFLALIIALAIGVVDAAFQHAEHLRKNMMSRKEIQDEMKDAEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K++++ + +M+ +A ++I NPTHYA+AL++ + APV VAKG + I
Sbjct: 241 PHMKSQRRQRGQQIAMGQMLADVPKADVVIVNPTHYAVALQWSREPGAAPVCVAKGVDEI 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R++A E+ IPI +P AR+L + I I Y VA I +
Sbjct: 301 AAAIRRVANENAIPIHSDPPTARALHAAIGIGDEILEEHYAPVAAAIRFAEEMR 354
>gi|260778657|ref|ZP_05887549.1| type III secretion inner membrane protein HrpY [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604821|gb|EEX31116.1| type III secretion inner membrane protein HrpY [Vibrio
coralliilyticus ATCC BAA-450]
Length = 350
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 162/350 (46%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K++ DA +G S E + L Y + + ++
Sbjct: 1 MAE------KTEKPTQKRLRDARKKGQVIKSNEIVTGFQMAVILGYFIIEGQGMMEAIWK 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + S +V ++ R + + + ++ S ++Q PV
Sbjct: 55 MIDLAITSIDLPLKVAAETVVAAFVYI---LIRFIAGLVFILVITVAFSCMVQTGPVWAS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPSF +V++ K I+S+ +L K+ +KI+++ + L ++ +
Sbjct: 112 ESLKPSFNKVNVINNAKNIFSMKSLFELCKNMLKILVLSLVFYYLLHQHVNMFQYLPTCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ F ++ + L+ +V D + + Q +LKMSK++ K E K++ GNP
Sbjct: 172 VDCGVEIIFTLIKWLWGAFLVCYLVFSVGDYAFVHFQTMKQLKMSKEDTKQEYKETEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ + R ++ ++T+I+ NPTH A+ L Y E P+++ K Q +A
Sbjct: 232 EVKQKRRELQRETANGSLVSNVKKSTVIVRNPTHIAVCLYYQPGETPLPLVLDKAQEHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+ ++A +H +P+ E LAR+L+ QV IP ++ VA+L+ +
Sbjct: 292 LHVVEMAEKHEVPLVENIPLARALYHQVEPGQVIPESLFEPVAELLRVVM 341
>gi|319898624|ref|YP_004158717.1| flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
gi|319402588|emb|CBI76133.1| Flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
Length = 356
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 119/354 (33%), Positives = 199/354 (56%), Gaps = 1/354 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T
Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLT 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L ++ I L+ + S + P L+L + I + +Q +P
Sbjct: 61 FFLVQWFERPESWRINTAEDIKHLIYLVGGSVGLALAPILILIPLLNIVASAVQNVPRFV 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + RVS G KRIYS LV F+KS K+I V I+ + ++ ++ +
Sbjct: 121 IERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + + L LD+ WS W +L+M+KQEIK+E K GN
Sbjct: 181 DASALPEYIRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P++K R +S+AR R R +M+ AT+I+TNPTH+++ALRY + APV++AKGQ+++
Sbjct: 241 PMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R+IA +++IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K
Sbjct: 301 ALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354
>gi|251772429|gb|EES52996.1| flagellar biosynthetic protein FlhB [Leptospirillum
ferrodiazotrophum]
Length = 365
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 105/352 (29%), Positives = 189/352 (53%), Gaps = 2/352 (0%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M++N+ + E P+S+++E A EG SRE F + A LI + + S + +
Sbjct: 1 MADNENDGQLRQEEPTSRRLEKAREEGQVARSREVGYFFFLAASLILMASYGSRLVEGLR 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
D+ L + + L I + L L P L F++FG+ +Y++Q +++
Sbjct: 61 DDMSYYLRHSGEISL-TPDGITPFVKGLVLHEMGRTFPLLGGFLVFGVAAYIVQGGILVS 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ RVS +GIKR++S L ++ +K+++ I+ +L +++ T+ +
Sbjct: 120 PKAAAIKWNRVSPSQGIKRLFSWRALEELLRYTIKVVVSLLILFYALKQDWMTLPALMET 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
H ++ + VL+ L A L + D + L+M++ EIK+E K++ G+
Sbjct: 180 GAHRMVGALYHFTFVVLVSFLPLYAALAIGDYLFQRFMMMRGLRMTRTEIKEETKETEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P ++ R +SI R+ R +MM AT++ITNPTH+A+ L+Y APV+VAKG + +
Sbjct: 240 PHVRARIRSIQRAMARRRMMSKIKDATVVITNPTHFAVVLKYHPESMAAPVVVAKGADEV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A ++R+IA E +P+ E+P AR LF++ P++ IP FY+AVA+++ +Y
Sbjct: 300 AFRIREIAREVGVPVVEDPPTARGLFRECPLDREIPFTFYEAVARILSILYQ 351
>gi|83646009|ref|YP_434444.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
2396]
gi|83634052|gb|ABC30019.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
2396]
Length = 345
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 87/341 (25%), Positives = 172/341 (50%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ DA +G S+E + ++A + LLF + L L A
Sbjct: 3 EKTEKPTPKKLLDARKKGQVAHSKELVSTAMMIA-MYGLLFASGYSLVEALQSLIDLPAR 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + +L + + +++P +LL ++ + S + P+ + VK K
Sbjct: 62 FYGQPF--GEALQAVLNGVFEKSLDILLPFILLVIVTAVVSNVGHVGPLFAMESVKFDLK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ EG+K+++S+ +L+ +KS VKI+ + +I +T N + I+
Sbjct: 120 KIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITANLNDIRKLPHCGSDCIMPFI 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ ++ ++ + VLD + H+ +L+M+K E+K E K + GNP + ++K
Sbjct: 180 GHLMLQLAMVSMVAFVIVAVLDFLYQKHEHQKQLRMTKDEVKREYKDAEGNPEVIGQRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R + M+ +A++I+TNPTH A+ + Y + P ++ K +N A++++KIA
Sbjct: 240 IHREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAKNTTAQRVKKIAA 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+ +PI E LAR+L+ Q + + IP + VA+++ +
Sbjct: 300 KEGVPIMENIPLARALYAQAELENYIPSELIEPVAEVLKWV 340
>gi|146309439|ref|YP_001189904.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
gi|145577640|gb|ABP87172.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
Length = 377
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE ++ KTE S+ K++ + +G S++ S S+LA L L F + ++
Sbjct: 1 MSEQNSGQEKTEEASAHKLKKSKEDGQVARSKDLSTTISLLATLFILKFSAGLFLEGLSD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + + LL + L +L+ P +LL + + L+ V +
Sbjct: 61 SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLAP-MLLTSVLVVALSLVPGGWVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++ G+ RI+S N +KS +K++++ + + + ++ ++
Sbjct: 119 KNFAPKLSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPELIALQRSS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A +++ ++L + +DI + + K++M+KQE K+E K G P
Sbjct: 179 VVQAISAALNLTFNLILCLMLVFVLFSFIDIPLQRYFFLKKMRMTKQERKEEHKNQEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R K + R ++ ++ + A +II NPTHYA+AL+Y + AP ++AKG + A
Sbjct: 239 EVKARIKQLQRQMLQRQISKVIKNADVIIVNPTHYAVALKYDSKKAAAPFVLAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A +H + + E P LAR+++ IN IP Y AVA ++ I K
Sbjct: 299 LYMRQMAKKHELEVLEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351
>gi|254228241|ref|ZP_04921670.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
gi|262394130|ref|YP_003285984.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
gi|151939314|gb|EDN58143.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
gi|262337724|gb|ACY51519.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
Length = 351
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 91/347 (26%), Positives = 176/347 (50%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA +I L F + + S L +L
Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVLFAFADYYMSHI-SALILLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D +V + ++ + L+ P +L+ + I S + Q + + VKP
Sbjct: 61 SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWLTLRGNINALMQIPTCGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMIAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWLASLE 345
>gi|323493113|ref|ZP_08098244.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
gi|323312584|gb|EGA65717.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
Length = 375
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +KTE S++KI+ A +EG P ++E + +A +Y S S+
Sbjct: 1 MSE-QSSQDKTEQASAQKIKKARDEGQIPRAKEFTTAVIFVAVAVYFYSQISAIWNSIAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S ++ L + ++ L H +L++P ++ ++ + S LI +
Sbjct: 60 IFRYNM-SLNKQDLANPLQMIEQLGHSLGVVIQLLLPLFVVIIVVAVASSLILGGWMFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+V P +++ GIKR++S + V +KS K+ ++ ++ L + +L +
Sbjct: 119 ANVMPKLSKLNPLSGIKRMFSSRSFVELLKSTFKVAVIFALLYAYLNNHLQPLLGMQMLS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+++ + V+DI + + +L+M+KQEIK+E K + G P
Sbjct: 179 LEQGVVKVMMILFDGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEIKEEYKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+A++Y ++DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFARRKIEKMVPTADVVITNPTHYAVAVKYDPAQSDAPFVVAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+ + I P L RS++ I A+P Y AVA ++ + K
Sbjct: 299 MHIQRIARENQVEIVNSPPLTRSIYHTTAIEQAVPSQLYIAVAHILTYVMQLK 351
>gi|120586865|ref|YP_961210.1| YscD family type III secretion protein [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|120564279|gb|ABM30022.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
vulgaris DP4]
Length = 346
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 84/344 (24%), Positives = 166/344 (48%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P+ K++ +A +G+ S++ ++LA Y F S+ + +
Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
E + + + H +A +V+P + L MM L Q + P +
Sbjct: 63 MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFAIPDGDIGLLLKVL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E IP+ + LARSLF + N+ IP VA+++ +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSL 343
>gi|170748134|ref|YP_001754394.1| flagellar biosynthesis protein FlhB [Methylobacterium radiotolerans
JCM 2831]
gi|170654656|gb|ACB23711.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
JCM 2831]
Length = 353
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 124/353 (35%), Positives = 208/353 (58%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE ++KTEA S KKI DA+ EGN P SREA +F+SIL LI+L+F
Sbjct: 1 MSE--DRESKTEAASEKKISDAIAEGNTPFSREAPVFASILGLLIFLVFVARDQGLPFVQ 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L ++L +E + L+ L+L R ++P L++ + GI + + Q P + +
Sbjct: 59 RLALILEQPRNFSVETRHDAMRLVHALALEMGRFLLPVLIILLAAGITASIFQNAPRVVI 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++P + R+S G R++S+ + F KS K +G + + L + +++ + +
Sbjct: 119 DRIQPKWSRISPVTGWNRLFSLQGFIEFGKSLFKFFAIGGMSYMVLHADRHEIVNVMFVD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ + + L D+ W+ +W L+MS+QE+KDE KQ G+P
Sbjct: 179 PVGLPEFLLTLSVRLVSAVSVATIALVAGDLVWTRLRWQRDLRMSRQEVKDEFKQLEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K + +S+A+ R+R +MM A RAT+I+ NPTHYA+ALRY Q+ENDAP+++AKG +LIA
Sbjct: 239 LVKAKMRSLAQDRLRKQMMAAVPRATMILANPTHYAIALRYDQSENDAPMVLAKGADLIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R++A +H I + + +L R+++ V IN AIP FY+AVA L+ + +K
Sbjct: 299 LRIRELAEKHRIEVVVDKALTRAMYDHVEINQAIPAEFYRAVANLLVYVMTRK 351
>gi|32471372|ref|NP_864365.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
gi|32443213|emb|CAD72044.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
gi|327537626|gb|EGF24338.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica WH47]
Length = 360
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 174/349 (49%), Gaps = 1/349 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D+ +K + S +K A +G S++ + + +LA + L ++ +
Sbjct: 2 SDSGGDKKHSASERKRRQAREKGQIAKSQDLTSATLLLAAIGALYAIGGNMAAYLSGGIE 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + + ++L +S + +P ++L + G+ + Q +L+ + +
Sbjct: 62 QALGETKLAPMTNQDATQYML-QISQRLAMAAVPMMILMFIGGVLINVFQSGLLLSTDKL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P +S G KRI S+ ++ + K+ ++G I ++L ++ ++ S +
Sbjct: 121 MPKLSNISPMSGAKRILSLQGVMRLVFGMFKVGIIGGIAYLALRAHHGDVISMASLSVPQ 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ F T+ V + I + + L +L+ + + + L M+ QE++DE+K + +P +
Sbjct: 181 LAKSMFDTLFGVSLWIGVGLFVLALLEYVYQWWKTEQDLMMTDQEVRDEMKDTEADPQVA 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R++ +AR ++ +A ++ +NPT A+A++Y AP++VAKG +IA+++
Sbjct: 241 ARRRQVARQLAMGQLGSEVPKADVVASNPTELAIAIKYDPLTMPAPIVVAKGAGMIAQRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
R++A E+ IP+ E LA++L+K V + +P Y+AVA+++ +Y
Sbjct: 301 RRLALENGIPVVERKELAQALYKLVDVGQEVPAEQYQAVAEILRYVYQM 349
>gi|332558493|ref|ZP_08412815.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
gi|332276205|gb|EGJ21520.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
Length = 380
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 161/357 (45%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K+ E A +G+ S+E +F+++ A + LL + ++
Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATL-AGGLALLMMIEGLLPALVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LE I+ + L + + + + +
Sbjct: 60 GWSGYLVIEPGADLERIAMV--RLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGINFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + +A
Sbjct: 118 KALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLWTAA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S G+P
Sbjct: 178 PGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESNGSP 237
Query: 241 IIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 238 EVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVILAMG 297
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y
Sbjct: 298 KGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354
>gi|17989459|ref|NP_542092.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
16M]
gi|148558113|ref|YP_001257188.1| flagellar biosynthesis protein FlhB [Brucella ovis ATCC 25840]
gi|163844317|ref|YP_001621972.1| flagellar biosynthesis protein FlhB [Brucella suis ATCC 23445]
gi|225628598|ref|ZP_03786632.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
gi|225685983|ref|YP_002733955.1| flagellar biosynthesis protein FlhB [Brucella melitensis ATCC
23457]
gi|254699432|ref|ZP_05161260.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 5 str. 513]
gi|254706322|ref|ZP_05168150.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
M163/99/10]
gi|254711387|ref|ZP_05173198.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis B2/94]
gi|256014911|ref|YP_003104920.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
gi|256029983|ref|ZP_05443597.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
M292/94/1]
gi|256043043|ref|ZP_05445988.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059636|ref|ZP_05449833.1| flagellar biosynthesis protein FlhB [Brucella neotomae 5K33]
gi|256111971|ref|ZP_05452922.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 3 str.
Ether]
gi|256262893|ref|ZP_05465425.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
gi|260564276|ref|ZP_05834761.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
gi|261313768|ref|ZP_05952965.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
M163/99/10]
gi|261318993|ref|ZP_05958190.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
gi|261323606|ref|ZP_05962803.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
gi|261749883|ref|ZP_05993592.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
gi|265987004|ref|ZP_06099561.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
M292/94/1]
gi|265989482|ref|ZP_06102039.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993419|ref|ZP_06105976.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
Ether]
gi|17985338|gb|AAL54356.1| flagellar biosynthetic protein flhb [Brucella melitensis bv. 1 str.
16M]
gi|148369398|gb|ABQ62270.1| flagellar biosynthetic protein FlhB [Brucella ovis ATCC 25840]
gi|163675040|gb|ABY39150.1| flagellar biosynthetic protein FlhB [Brucella suis ATCC 23445]
gi|225616444|gb|EEH13492.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
gi|225642088|gb|ACO02001.1| flagellar biosynthetic protein FlhB [Brucella melitensis ATCC
23457]
gi|255997571|gb|ACU49258.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
gi|260151919|gb|EEW87012.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
gi|261298216|gb|EEY01713.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
gi|261299586|gb|EEY03083.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
gi|261302794|gb|EEY06291.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
M163/99/10]
gi|261739636|gb|EEY27562.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
gi|262764289|gb|EEZ10321.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
Ether]
gi|263000151|gb|EEZ12841.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092730|gb|EEZ16939.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
gi|264659201|gb|EEZ29462.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
M292/94/1]
gi|326410307|gb|ADZ67371.1| flagellar biosynthesis protein FlhB [Brucella melitensis M28]
gi|326553600|gb|ADZ88239.1| flagellar biosynthesis protein FlhB [Brucella melitensis M5-90]
Length = 356
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|77463637|ref|YP_353141.1| flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
gi|77388055|gb|ABA79240.1| Flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
Length = 380
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 161/357 (45%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K+ E A +G+ S+E +F+++ A + LL + ++
Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATL-AGGLALLMMIEGLLPALVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LE I+ + L + + + + +
Sbjct: 60 GWSGYLVIEPGADLERIAMV--RLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGINFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + +A
Sbjct: 118 KALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLWTAA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S G+P
Sbjct: 178 PGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESNGSP 237
Query: 241 IIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 238 EVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVILAMG 297
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y
Sbjct: 298 KGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354
>gi|256256624|ref|ZP_05462160.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 9 str.
C68]
gi|260882866|ref|ZP_05894480.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
C68]
gi|297249980|ref|ZP_06933681.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
B3196]
gi|260872394|gb|EEX79463.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
C68]
gi|297173849|gb|EFH33213.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
B3196]
Length = 356
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|254695264|ref|ZP_05157092.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 3 str.
Tulya]
gi|261215629|ref|ZP_05929910.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
Tulya]
gi|260917236|gb|EEX84097.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
Tulya]
Length = 356
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 205/347 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ + L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRSEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|317486796|ref|ZP_07945612.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
3_1_6]
gi|316921959|gb|EFV43229.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
3_1_6]
Length = 346
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P+ K++ ++ +G+ S++ ++LA +Y++ + S+ + + + +
Sbjct: 3 DKTEQPTPKRLRESREKGDVCKSQDVPSALTVLALSVYIVVMGGHLLESLLAMMELPMKL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ E H+ A +V P + L M + + L Q + P +
Sbjct: 63 LSTPYAEAAPRAAEATFHI---AVSIVAPLVGLVMAVALVANLGQVGILFAFKGAMPKLE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
VS + ++++S+ NLV F+K+ +K+ ++G + + + ++ T+ ++
Sbjct: 120 NVSPSKWFQKVFSMKNLVEFLKNIIKVTVLGVTVWVVMRDHLPTLFAIQRGTIWTMWEVL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
V+ +L+M + +D + Q+ MSK E+K E K+ G+P +K ++K
Sbjct: 180 GMAVKDLLLMAAGVFCVIAAVDYLFQKWQYTKNHMMSKDEVKREYKEMEGDPQVKGKRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + + +A +++TNPTHYA+AL Y + PV++AKG+ +A++M ++A
Sbjct: 240 LHQEMLSQNALGNVRKAKVLVTNPTHYAVALDYEKDRTPLPVILAKGEGFLAQRMIRVAQ 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E IPI LARSLF+ N+ IP VA+++ +
Sbjct: 300 EEGIPIMRNVPLARSLFENGTENAYIPKDLIGPVAEVLRWVQSL 343
>gi|315186370|gb|EFU20130.1| flagellar biosynthetic protein FlhB [Spirochaeta thermophila DSM
6578]
Length = 387
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 6/348 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ KI A EG + E +L LI L S ++ S
Sbjct: 32 EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+S + + +H +L +P ++ + G+ ++Q + + + P
Sbjct: 92 FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALFAGVAGNVLQVGFLFTVKPITP 148
Query: 126 SFKRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R+ + KR+ +S L N K+ +K+ +G + +++ +++ +
Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+ V ++L + ++++D + Q LKMS++E+K+E K G+P++
Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
MR IA EH +P+ E LAR+L++ V + IP +Y VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQDVEVGDTIPEQYYAVVATILAKVY 376
>gi|221639480|ref|YP_002525742.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
gi|221160261|gb|ACM01241.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
Length = 382
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 161/357 (45%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K+ E A +G+ S+E +F+++ A + LL + ++
Sbjct: 3 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATL-AGGLALLMMIEGLLPALVR 61
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LE I+ + L + + + + +
Sbjct: 62 GWSGYLVIEPGADLERIAMV--RLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGINFST 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + +A
Sbjct: 120 KALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLWTAA 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S G+P
Sbjct: 180 PGDAATVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESNGSP 239
Query: 241 IIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 240 EVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVILAMG 299
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y
Sbjct: 300 KGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 356
>gi|294853145|ref|ZP_06793817.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
gi|294818800|gb|EFG35800.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
Length = 356
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIADFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|256158147|ref|ZP_05456063.1| flagellar biosynthesis protein FlhB [Brucella ceti M490/95/1]
gi|256252902|ref|ZP_05458438.1| flagellar biosynthesis protein FlhB [Brucella ceti B1/94]
gi|261219990|ref|ZP_05934271.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
gi|265996665|ref|ZP_06109222.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
gi|260918574|gb|EEX85227.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
gi|262550962|gb|EEZ07123.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
Length = 356
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 124/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY EN APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNENAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|319409199|emb|CBI82843.1| Flagellar biosynthetic protein flhB [Bartonella schoenbuchensis R1]
Length = 356
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 123/355 (34%), Positives = 204/355 (57%), Gaps = 1/355 (0%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS+ ++KTE P+ KI +GN P SRE +FSS+L+ + +F P I ++
Sbjct: 1 MSDEKPDKESKTEEPTEHKIHKEEEKGNLPFSRELPIFSSLLSFSVISIFIAFPAISQLS 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L ++ + L+ + + + P L++ + GI + IQ +P +
Sbjct: 61 HFLLQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILIIIPLIGISASAIQHVPRII 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + RVSL G +RI+S LV F+KS K+I V I+ I +N ++ +
Sbjct: 121 MERIRPQWSRVSLSNGFERIFSKAGLVEFLKSLTKLIGVSIIVYIMFFKNNTIFINALLT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ ++ + + + + ++ +A + D+ WS W KL+MSKQEIK+E K GN
Sbjct: 181 DAPALPEYIREKLVGLSLSFIVAVAAIAGFDLAWSRFHWRQKLRMSKQEIKEEHKSLEGN 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P+IK R +S+A R+R +M+ AT+I+ NPTH+++ALRY + APV+VAKGQ+++
Sbjct: 241 PMIKARMRSLAHDRMRLRMISNVPTATLIVANPTHFSVALRYKPPLDYAPVVVAKGQDIL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
A ++R+IA E++IP+ E LAR+L+KQV ++ IPP Y++VA LI I +KI
Sbjct: 301 ALQIREIAVENDIPVIENVELARTLYKQVEVDQVIPPELYESVAALIRFINSQKI 355
>gi|238752885|ref|ZP_04614350.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
gi|238708924|gb|EEQ01177.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
Length = 377
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 3/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ K+E P++ K+ A +G+ P S++ ++ + ++A LI L F + +
Sbjct: 4 STGEKSEKPTTGKLTKARKKGDIPRSKDVTMAAGLVASLITLTLFMPYYKELIKESFLAV 63
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
A++ ++D + + LL ++L + L+ + I + LI + P
Sbjct: 64 SRMASR--MDDPTALEQLL-RINLFIFGKFLITLIPIPLASIVATLIPGGWNFTPVKLIP 120
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
K++S GIK+I+S +N +K K +V + I + + +L + +
Sbjct: 121 DLKKLSPIAGIKKIFSASNGTEVLKMLAKCSIVLYTLYIMVNNSLADLLRLQALPLLEAI 180
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
F +L+ + I V+DI S + + K+KM+KQE+K E K + GNP IK R
Sbjct: 181 TEGFSLYHGILVYFITIIVIFAVIDIPLSTYLFKKKMKMTKQEVKQEHKSNDGNPEIKAR 240
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ + R ++ ++ A +IITNPTH+++AL+Y + AP +VAKG++ IA +R
Sbjct: 241 VRQLQRQFSMGQINKSVPNADVIITNPTHFSVALKYSPEKASAPYIVAKGKDDIALYIRS 300
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A ++NI I E P LAR+++ +N +P Y+A+AQ++ + K
Sbjct: 301 VAEKNNIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348
>gi|58039957|ref|YP_191921.1| flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
gi|58002371|gb|AAW61265.1| Flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
Length = 358
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 177/353 (50%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D KTEAPSS++++ A +G +SREA F ++L + +
Sbjct: 1 MSDSDD---KTEAPSSQRLQKAREDGQIVMSREAMNFVALLGGFAGIFMVLPYLVMDFVH 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL+A+A + ++ H + +L +P + +G +Q +++
Sbjct: 58 VMQVLMANAGTVPMAQ-GGLLNSTDHAIEAGLKLAVPMAATVAVLCLGGGFLQTGFLIHP 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F+R+S G KRI L + K+ K + ++ + +
Sbjct: 117 ESLLPKFERISPLAGFKRIAGGGTLPDTFKALAKFAIFAVVLWNISKGAIPSAPRMVGLE 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +L + ++L + DI W + SKLKMS++++KDE K + G+P
Sbjct: 177 PGPLLKMMTDLGFRAASAMILAQLVIAGFDIFWMRFRHISKLKMSREDLKDEYKNTEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQK++ R +MM A AT+++TNPTHYA+AL Y + AP +VAKG + +A
Sbjct: 237 HVKGRQKALRAKAARQRMMAAVKTATVVVTNPTHYAVALVYERGGGGAPRIVAKGMDDVA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA ++ IPI P LAR+LF +P++S IP +K VA +I ++ K
Sbjct: 297 ARIRDIAQDNRIPIVANPPLARALF-TLPLDSEIPAEHFKVVAAIIAYVWKLK 348
>gi|300024611|ref|YP_003757222.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
51888]
gi|299526432|gb|ADJ24901.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 125/346 (36%), Positives = 211/346 (60%), Gaps = 1/346 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D ++TE + KK+ DA N+GN P SRE F ++A L+ + + S
Sbjct: 1 MSEQD-QQSRTEEATDKKLLDARNDGNVPSSREVPNFLYLMAALLVIAVLGQTFASHLGS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LLA+A +L + ++ L + +A+ + P +L F G+ + + Q P+
Sbjct: 60 LLVGLLANAGSIRLGNGGDVMLLFDVVGKAAAVVTAPIILAFGAAGVIASVAQNPPIPIA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P R+S +G+KR++S++ L F+K +++++V L + + I +
Sbjct: 120 KRVIPDISRLSPAKGLKRMFSLSGLFEFLKLSLRLVVVVVTSVAILMYMWHDFTNSIWND 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P +IL + +V +LI + L TL + D+ ++ W L+M++QEIKDE KQ G+P
Sbjct: 180 PSAILTLSQKSVVALLISLALMSFTLLIFDLPVAHVLWRRSLRMARQEIKDEQKQMEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K R++SIA++R R +M++ S+ATI+I NPTH+A+ALRY+++E AP +VAKGQ+LIA
Sbjct: 240 LMKARRRSIAKARSRQRMLKGVSKATIVIANPTHFAVALRYVRSEGGAPRVVAKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
K+R+IA E+ IP+ E+ +LARSL+ +V ++ IP FY+A+A+++
Sbjct: 300 LKIRRIAEENAIPVIEDKALARSLYAKVEVDQMIPAEFYRAIAEIL 345
>gi|62317075|ref|YP_222928.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 1 str.
9-941]
gi|83269068|ref|YP_418359.1| flagellar biosynthesis protein FlhB [Brucella melitensis biovar
Abortus 2308]
gi|189022341|ref|YP_001932082.1| flagellar biosynthesis protein FlhB [Brucella abortus S19]
gi|237816636|ref|ZP_04595628.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
gi|254698362|ref|ZP_05160190.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 2 str.
86/8/59]
gi|254731807|ref|ZP_05190385.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 4 str.
292]
gi|260544314|ref|ZP_05820135.1| type III secretion exporter [Brucella abortus NCTC 8038]
gi|260759573|ref|ZP_05871921.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
292]
gi|260762817|ref|ZP_05875149.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
86/8/59]
gi|62197268|gb|AAX75567.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 1 str.
9-941]
gi|82939342|emb|CAJ12286.1| Type III secretion exporter:Flagellar biosynthetic protein FlhB
[Brucella melitensis biovar Abortus 2308]
gi|189020915|gb|ACD73636.1| Type III secretion exporter [Brucella abortus S19]
gi|237787449|gb|EEP61665.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
gi|260097585|gb|EEW81459.1| type III secretion exporter [Brucella abortus NCTC 8038]
gi|260669891|gb|EEX56831.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
292]
gi|260673238|gb|EEX60059.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
86/8/59]
Length = 356
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 122/347 (35%), Positives = 203/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DA ++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDAQDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|332294884|ref|YP_004436807.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
DSM 14796]
gi|332177987|gb|AEE13676.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
DSM 14796]
Length = 349
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 8/349 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
++TE + ++ +A G S+E S I L FF G + +
Sbjct: 4 DEGDRTEPATDRRRREARKMGQVAKSQELSSILVFFGSYIVLQFFLVIGFNNWFNVWKGF 63
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ D + + ++ L IP ++ + + S ++Q V+ + P
Sbjct: 64 FS-------FDSLDLNLHYHNFIMAFLLLTIPPVVGALFMALFSNILQVGFVITPQVLIP 116
Query: 126 SFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F + + + KR+ S LV+ +K +KI+++ I+T SL E + +L+ + H
Sbjct: 117 KFSNLDITKYFKRLLSFRGLVDQVLKPTIKILILAYILTSSLLEAFPEILNLSFIDVHKG 176
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
V +L+ ++ + ++D + Q+ ++MSKQE+K+E K + G+P+IK
Sbjct: 177 FQIVIKIVTSILVKTMVVLFFFALIDYLFQRWQYEKSIRMSKQELKEEFKTTEGDPLIKA 236
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
R K + R +MM+ +A +IITNPTH A+A+ Y + AP +VAKG ++A+K+
Sbjct: 237 RIKRLQSEMARRRMMQEVPKADVIITNPTHVAVAIFYDPEKFKAPKVVAKGMGIVAEKII 296
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+IA E+++P+ +LAR+LFK+V IN IP FYKAVA ++ +Y KK
Sbjct: 297 QIAKENDVPLVRNETLARALFKEVEINFEIPEKFYKAVASILATVYKKK 345
>gi|241761183|ref|ZP_04759272.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|260752855|ref|YP_003225748.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|241374802|gb|EER64263.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552218|gb|ACV75164.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 380
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y +
Sbjct: 1 MADSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L + L+ + L +L I + +
Sbjct: 61 IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ +R++ G R++ + L KS VK++L+G++ L + ++
Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + + +++++ + +A + +D+ + +L+MSKQEIKDE KQ+ G+
Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK + + R +A +T++ITNPTH+A+AL+Y E+ AP++ AKG + +
Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A +R++A E ++P+ P LAR+++ I YKAVA ++ I+
Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351
>gi|23499885|ref|NP_699325.1| flagellar biosynthesis protein FlhB [Brucella suis 1330]
gi|161620208|ref|YP_001594094.1| flagellar biosynthesis protein FlhB [Brucella canis ATCC 23365]
gi|254702550|ref|ZP_05164378.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 3 str. 686]
gi|260568543|ref|ZP_05839012.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
gi|261753127|ref|ZP_05996836.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
gi|23463460|gb|AAN33330.1| flagellar biosynthetic protein FlhB [Brucella suis 1330]
gi|161337019|gb|ABX63323.1| flagellar biosynthetic protein FlhB [Brucella canis ATCC 23365]
gi|260155208|gb|EEW90289.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
gi|261742880|gb|EEY30806.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
Length = 356
Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDHMIAPEFYKAVAELIR 347
>gi|148553141|ref|YP_001260723.1| flagellar biosynthesis protein FlhB [Sphingomonas wittichii RW1]
gi|148498331|gb|ABQ66585.1| type III secretion exporter [Sphingomonas wittichii RW1]
Length = 379
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 83/352 (23%), Positives = 168/352 (47%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTEAP+ K+ +DA +G+ SRE ++ ++ + ++
Sbjct: 1 MAEGPEDDEKTEAPTPKRRQDAAEKGDVLQSRELGTALVMVVGAGWIAIAGPWAMAALKR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L S +E+ + L + + + ++ L + I + +
Sbjct: 61 MLSNAL-SFDAGAIENFDPLSAAL-AMVATVALPLLLLFALTLAAAIAAPAMLGSLGFRW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + +++ G+KRI+ + L+ KS +KI+ +G + L + ++ +
Sbjct: 119 SALGFKANKLNPMAGLKRIFGMQGLIELGKSLLKILALGAVGYWLLMDRIAAIVTMGQQD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L T ++++ L +A + D+ Q +L+MSKQEIK+E KQ+ G+P
Sbjct: 179 LRTALDSLGSTFVFAVLVMTLALAVVAGADVPMQMFQRGKRLRMSKQEIKEESKQTEGSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + +A AT+++TNPTH+A+ALRY + APV++A+G+ A
Sbjct: 239 ELKAAIRQKQMAAAMGSARKAVVEATVVLTNPTHFAVALRYRPGFDTAPVVLARGRGATA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +R++A E+++P+ P L R+++ I + AVA ++ +++
Sbjct: 299 QAIRELATENSVPMLHYPQLTRAIYYTSRSGQVIREDLFIAVAAILAFVFNL 350
>gi|146277693|ref|YP_001167852.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
17025]
gi|145555934|gb|ABP70547.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
17025]
Length = 380
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 83/357 (23%), Positives = 163/357 (45%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K+ + A +G+ S+E +F+++ A + LL + ++
Sbjct: 1 MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFATL-AGGLALLVMLQGMLPALVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ + ++ L + + + ++ + +
Sbjct: 60 GWSGYLVLEPGADLDRV--MMLRLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGGINFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + ++
Sbjct: 118 KAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLRDELAPLDRLWTSA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K++ G+P
Sbjct: 178 PADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQELKEESKEANGSP 237
Query: 241 IIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R +E +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 238 EVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYVPGETTAPVILALG 297
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y
Sbjct: 298 KGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAVAAVLAHVYRL 354
>gi|30524900|gb|AAP34345.1|AF499777_13 HrcU [Xanthomonas axonopodis pv. glycines]
Length = 357
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|300117307|ref|ZP_07055097.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
gi|298725142|gb|EFI65794.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
Length = 348
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHSFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT ++ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFVVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|126462469|ref|YP_001043583.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
17029]
gi|126104133|gb|ABN76811.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
17029]
Length = 380
Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 161/357 (45%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE P+ K+ E A +G+ S+E +F+++ A + LL + ++
Sbjct: 1 MAEGEDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATL-AGGLALLMMIEGLLPALVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LE I+ + L + + + + +
Sbjct: 60 GWSGYLVIEPGADLERIAMV--RLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGINFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + +A
Sbjct: 118 KALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLWTAA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S G+P
Sbjct: 178 PGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESNGSP 237
Query: 241 IIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 238 EVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVILAMG 297
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y
Sbjct: 298 KGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354
>gi|163939579|ref|YP_001644463.1| flagellar biosynthesis protein FlhB [Bacillus weihenstephanensis
KBAB4]
gi|163861776|gb|ABY42835.1| type III secretion exporter [Bacillus weihenstephanensis KBAB4]
Length = 348
Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAH 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVLKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + IP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344
>gi|269967242|ref|ZP_06181306.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|262284522|gb|ACY41059.1| VscU [Vibrio alginolyticus]
gi|269828098|gb|EEZ82368.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
Length = 349
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 91/347 (26%), Positives = 176/347 (50%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA +I L F + + S L +L
Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVLFAFADYYMSHI-SALILLP 60
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + +D +V + ++ + L+ P +L+ + I S + Q + + VKP
Sbjct: 61 SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWLASLE 345
>gi|84514803|ref|ZP_01002166.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
gi|84510962|gb|EAQ07416.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
Length = 383
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 93/358 (25%), Positives = 168/358 (46%), Gaps = 8/358 (2%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M++ KTE P+ K++E A +G S+E + S++ + L F P + +
Sbjct: 1 MADEASDGQEKTEEPTQKRLEKAKEDGQVASSKELFVLSTLSVGFL-LYFGLLPFLSGLL 59
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ LL + + L D I T + + VI L L ++ + + +
Sbjct: 60 LEWSALLRFSGEAGLHD-EIIRNSSTSFAFIFWKSVIFALPLLVIIVLTQMAMSGSINWS 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + R++ G+KR++S+ LV +K+ K+ + + +L +
Sbjct: 119 ASALAFKGSRINPVNGLKRMFSVKALVEMLKAVGKVASLIGAAIFVFSSEVDKLLTSQAT 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ L ++I+ LL +A + + D+ + + KLKM+ QE+KDE KQ+ G+
Sbjct: 179 HLFGGLSRLGDVFIFLMIVFLLVLAVIAMFDVVYQQYDNNKKLKMTLQELKDESKQTEGS 238
Query: 240 PIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
P +K + + + R++ R + ME AT IITNP H+A+AL+Y AP ++A
Sbjct: 239 PEVKAKIRRLQMTAGSRAKQRREAMEQVPSATAIITNPIHFAVALKYEIGTRGAPTILAM 298
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
G+ A+++ ++ E + +F LAR+LF I IPP Y AVA ++ IY
Sbjct: 299 GRGHQAQEIIRLGKEAGVTVFSNELLARALFFAGRIGDEIPPPLYTAVAAVLAFIYQL 356
>gi|163744325|ref|ZP_02151685.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
gi|161381143|gb|EDQ05552.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
Length = 372
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 109/357 (30%), Positives = 192/357 (53%), Gaps = 5/357 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D +KTE P+ KK+ DA +G+ P SRE + A L+ L+F + +
Sbjct: 1 MSDEDKS-SKTEEPTEKKLRDARKKGDVPQSRETGTAMLVFALLMILVFVLPSSVGGIVE 59
Query: 61 DLHVLLASATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
L L A + +L L + ++P + + ++ + LIQ
Sbjct: 60 ALQAPLLEAGVTAIGTGGTGLVEAGSVLKSLGFTLGLAMMPVVGIMVLAALFGVLIQGET 119
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
V++ +KP +++ G KR++S V F K+ VK++++G I ++ + ++
Sbjct: 120 VVSAERIKPKISKLNPLSGFKRLFSAEAFVEFAKNTVKVLVIGFITVWAVRDIAQSLGQT 179
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+ P ++L VR + ++ F+ + + DI W QW K MS +EI+DE K S
Sbjct: 180 QAFVPETLLAATLQKVRWIFLVTATFLVPIAIADIIWKRAQWKKKQMMSLKEIRDEHKDS 239
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK R+ + R+R R ++ +A A++++TNPTHYA+AL+Y Q +D PV VAKG
Sbjct: 240 EGDPQIKGRRAELRRARARQRIAQAIPGASVVLTNPTHYAVALKYEQGVDDVPVCVAKGA 299
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++A+++R++A EH+IP+ E LAR+L V ++ IP ++AVA++I + +
Sbjct: 300 DVMAQRIRELAKEHDIPMIENRPLARALHAAVEVDDRIPMEHWQAVAEIIGFVMDLR 356
>gi|325567516|ref|ZP_08144183.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
ATCC 12755]
gi|325158949|gb|EGC71095.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
ATCC 12755]
Length = 355
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE PS+K++ DA G P ++E + S+L +L + S
Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA + ++ + L L L P L+ + G+ + Q + +
Sbjct: 58 YFSQSLAQLADYQ-TSLADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP FK+++ GIK+ +S+ +L+N K+ K ++ + +L
Sbjct: 117 KAIKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348
>gi|312884814|ref|ZP_07744506.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367466|gb|EFP95026.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 375
Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats.
Identities = 96/352 (27%), Positives = 175/352 (49%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+ + +KTE S++KI+ A +EG P +++ + LA LIY S +
Sbjct: 1 MSESTS-QDKTEQASAQKIKKARSEGQIPRAKDFTAACIFLAVLIYFSSQMSLIWEKIAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ T++ L D + + L IP ++ + + S LI +
Sbjct: 60 TFEYNMR-LTKQDLADPYQTIEHFGNSLGILIELFIPMFIVILSIAMASSLILGGWLFRP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ P ++ +GIKRI S+ ++V +KS +K+ ++ TI+ + L + +L
Sbjct: 119 ANLMPKMSKLDPIKGIKRIVSLRSVVELVKSALKVTVIFTILYLYLNNHLQPLLGMQRLG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ LI++ + + ++DI + + +LKM+KQE+K+E K + G P
Sbjct: 179 IEQGSIQIMNILFDGLILMGIALLVFGLIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + R K+ + A ++ITNPTHYA+A++Y + +DAP +VAKG + A
Sbjct: 239 EVKQRIRQIQQQFSRRKVDKMVPTADVVITNPTHYAVAIKYDPSISDAPFVVAKGIDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++++A ++ + I P L RS++ I AIP Y AVA ++ +
Sbjct: 299 MHIQRVARDNQVEIIHSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVMQI 350
>gi|196045084|ref|ZP_03112317.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
03BB108]
gi|196024086|gb|EDX62760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
03BB108]
Length = 348
Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|289548904|ref|YP_003473892.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
gi|289182521|gb|ADC89765.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
Length = 349
Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats.
Identities = 92/345 (26%), Positives = 171/345 (49%), Gaps = 8/345 (2%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+++TE + + EG+ S + S+L + L YS+ S +
Sbjct: 4 ESRTERATPYRRRKLREEGHVAKSTDLVASLSLLVITVSLYLVGPQLYYSLLSIFYT--- 60
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
++ LL S ++ ++L + I ++L Q V L ++ +
Sbjct: 61 ----APTLSVTEHPTLLRFFVEKVSPYILSLMVLSTLTVILAHLGQFGVVFTLKPLRFRW 116
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R++ EGIKR+ S+ L K+ +KI ++ + + L + +++ + H +
Sbjct: 117 ERLNPVEGIKRLLSLTTLFELFKNTLKIGILLFTVYLFLRTEIYRLMESVLLPLHISILD 176
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K+ I++ + LD+ + + K++M+KQE+K+E KQ GNP++K +
Sbjct: 177 VMGLTLKLFIILGTLAIIMASLDLLYRRWDYERKIRMTKQEVKEEYKQHEGNPMVKGAIR 236
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKI 306
R + +M++ +AT++ITNPTH A+ALRY + APV++AKG IA+++ +
Sbjct: 237 KRMRQLAKGRMIKEVPKATVVITNPTHVAVALRYDPSGGDRAPVVLAKGVGQIAERIINV 296
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E+ +PI + LARSL++ + IPP FY+AVA++I I
Sbjct: 297 AREYGVPIVRKEELARSLYRWAEVGEEIPPRFYRAVAEIIAFILW 341
>gi|257866393|ref|ZP_05646046.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC30]
gi|257873091|ref|ZP_05652744.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC10]
gi|257800351|gb|EEV29379.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC30]
gi|257807255|gb|EEV36077.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC10]
Length = 355
Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE PS+K++ DA G P ++E + S+L +L + S
Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA + ++ + L L L P L+ + G+ + Q + +
Sbjct: 58 YFSRSLAQLADYQ-TSLADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348
>gi|254711986|ref|ZP_05173797.1| flagellar biosynthesis protein FlhB [Brucella ceti M644/93/1]
gi|254715056|ref|ZP_05176867.1| flagellar biosynthesis protein FlhB [Brucella ceti M13/05/1]
gi|261216763|ref|ZP_05931044.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
gi|261319630|ref|ZP_05958827.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
gi|260921852|gb|EEX88420.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
gi|261292320|gb|EEX95816.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
Length = 356
Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 204/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVGFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|306846305|ref|ZP_07478866.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
gi|306273300|gb|EFM55169.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
Length = 356
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 123/347 (35%), Positives = 205/347 (59%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPIFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLTIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R RH+M+ A AT+I+ NPTH+++ALRY E+ APV++AKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARHRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVIAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAVSHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|229155340|ref|ZP_04283450.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
gi|228628055|gb|EEK84772.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
Length = 348
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|91224467|ref|ZP_01259729.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|91190809|gb|EAS77076.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
Length = 349
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 89/347 (25%), Positives = 173/347 (49%), Gaps = 3/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + ILA +I L F + +++ + +
Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVLFAFADYYMSHISALILLPS 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q E + + + + L+ P +L+ + I S + Q + + VKP
Sbjct: 62 KLAYQGFQEALVDVAIAIAK---EIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + +
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+++++I+ + + D + KLKMSK E+K E K+ G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +P+ ++ LAR+L+ ++ IP +A A+++ + +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWLASLE 345
>gi|218896703|ref|YP_002445114.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
G9842]
gi|218542717|gb|ACK95111.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
G9842]
Length = 348
Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|5679184|gb|AAD46898.1|AF160974_1 HrcU homolog [Xanthomonas campestris pv. glycines]
Length = 357
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + I L H+ + L++P L+ ++ G+ Q +L V P
Sbjct: 62 DFPENTR--DATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R
Sbjct: 240 KEFAKDMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L+ QV + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341
>gi|254475662|ref|ZP_05089048.1| type III secretion exporter [Ruegeria sp. R11]
gi|214029905|gb|EEB70740.1| type III secretion exporter [Ruegeria sp. R11]
Length = 360
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D D K+ P+ +KI A +G+ P S + S+ ++ L +I + + + S
Sbjct: 1 MSQDDDSD-KSYEPTPEKIRKAREKGDVPKSTDLSVAAAYLGLIIVVYTSGEDMVRDMGS 59
Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ L + +L + + L S + + P ++ I S + QR V
Sbjct: 60 LMMSFLDQPDRHAELFFSDNGTPPVGGLLKSVASAMAPMFIIPAAAVILSLVGQRALVFA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P R+S+ K + + L F KS VK+IL + I L M+ +
Sbjct: 120 PSKLEPKLSRISIMSNAKNKFGMTGLFEFAKSTVKLILFSVCMGIYLNYRLPDMIASAAT 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
++ + +++ L+ + V+D + + K MS++EI DE+K S G+
Sbjct: 180 GAFVVVTMLGQLAIEFMVLALIIALAVGVVDAAFQQADFTRKNMMSRKEIMDEMKNSEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A+ ++ + A ++I NPTHYA+AL++ + APV V+KG + +
Sbjct: 240 PHMKGARRQKAQQIAMSAGVQDVATADVVIVNPTHYAVALKWDRQPGQAPVCVSKGVDEV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R++A E+ +PI +P AR+L V I I Y VA I +
Sbjct: 300 AAIIREVANENGVPIHSDPPTARALHAAVEIGDEIHEEHYAPVAAAIRFAEKMR 353
>gi|229121321|ref|ZP_04250552.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
gi|228662166|gb|EEL17775.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
Length = 348
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + IP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344
>gi|145284335|gb|ABP51916.1| AscU [Aeromonas veronii bv. sobria]
Length = 352
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 89/345 (25%), Positives = 175/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + IL+ + L+ + + + +
Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + ++H+V +L + L IP L + ++ + S+ Q +L+ +KP
Sbjct: 62 SHINLPFTQALNHVVE---NLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML I
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMSCITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++
Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ +N+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQ 343
>gi|206603139|gb|EDZ39619.1| flagellar biosynthesis protein, FlhB [Leptospirillum sp. Group II
'5-way CG']
Length = 362
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 105/350 (30%), Positives = 183/350 (52%), Gaps = 3/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D + K E P+++K+E A EG SRE +LA L+ + + +
Sbjct: 1 MA--DEFEQKQEEPTARKLEKAREEGQVARSREVGSLFFLLAALLLFGSVGHTVVVGLEN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A +L I L + + + P F+ I ++L Q PV ++
Sbjct: 59 QMEQGFVEAPSIRL-TPDSIGPYLGKILWNTLKTGFPLWGGFLAASILAFLFQGPPVWSV 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++RVS +G+ R++S +L+ K VK++LV ++ SL ++ + +A
Sbjct: 118 KALVPKWERVSPVKGMGRLFSGRSLIELAKYLVKVLLVMFVVLWSLRGDWERLPALQAAG 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
H +R L ++ + +LD Q L+M++ EI++E K++ G+P
Sbjct: 178 VHRFFGALTGFLRDALYRLIPLFVVIAILDFLLQRIQLNRSLRMTRSEIREEFKETEGDP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R +SI R+ R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A
Sbjct: 238 HVRSRIRSIQRAMARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+RKIA E +P+ E P LAR+L+ P++ IP FY+AVA+++ +Y
Sbjct: 298 LNIRKIAREARVPVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLY 347
>gi|257876006|ref|ZP_05655659.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC20]
gi|257810172|gb|EEV38992.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
EC20]
Length = 355
Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE PS+K++ DA G P ++E + S+L +L + S
Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA + ++ + L L L P L+ + G+ + Q + +
Sbjct: 58 YFSRSLAQLADYQ-TSLADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLSKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIVLAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348
>gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum E3 str. Alaska E43]
gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3
str. Alaska E43]
Length = 610
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 93/356 (26%), Positives = 179/356 (50%), Gaps = 20/356 (5%)
Query: 8 DNKTEAPSSKKIEDALNE---------GNAPISREASLFSSILACLIYLLFFFSPGIYSV 58
D KTE + G S++ S+ ++ AC + + + + +
Sbjct: 262 DEKTEEATP---------KKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTF 312
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L LA + + +++ F+ L L + + +P L M+ G+ + +IQ ++
Sbjct: 313 KGVLTYFLAFPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMI 371
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+KPS +++ +G+K ++S +LV +K+ V + ++ + + NY +++ +
Sbjct: 372 TGEPLKPSLGKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISN 431
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
S+ V + + I L + + D + +LKM+KQEIKDE KQ+ G
Sbjct: 432 LYLPSLGSEIKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEG 491
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQN 297
+P +K + K R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG +
Sbjct: 492 DPQLKAKIKQKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGAD 551
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +++ IA ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K
Sbjct: 552 NVALRLKTIAKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 607
>gi|228920479|ref|ZP_04083824.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229189867|ref|ZP_04316877.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
gi|228593541|gb|EEK51350.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
gi|228839109|gb|EEM84405.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 348
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|218233750|ref|YP_002366454.1| flagellar biosynthesis protein FlhB [Bacillus cereus B4264]
gi|218161707|gb|ACK61699.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
B4264]
Length = 348
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIREIKFIFLSILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|228984854|ref|ZP_04145024.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090732|ref|ZP_04221965.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
gi|228692674|gb|EEL46400.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
gi|228774804|gb|EEM23200.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 348
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|229160731|ref|ZP_04288723.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
gi|228622746|gb|EEK79580.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
Length = 348
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMLENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344
>gi|152975183|ref|YP_001374700.1| flagellar biosynthesis protein FlhB [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023935|gb|ABS21705.1| type III secretion exporter [Bacillus cytotoxicus NVH 391-98]
Length = 348
Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 182/353 (51%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ +P +L F + +Y+IQ + +
Sbjct: 57 SVAVLFNQIGKN-----ADTTEYFYLMGILLLKVSVPVFILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS ++L+G + + +N ++ I N
Sbjct: 112 KIIKPKASRINPKNYFTRLFSRKSLVDIVKSLFYMVLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKLIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ALRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVALRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR +A E IP+ E LARSL+ QV + AIP Y AV +++ + K
Sbjct: 292 LYMRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344
>gi|47565438|ref|ZP_00236479.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
gi|47557428|gb|EAL15755.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
Length = 348
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|257871304|ref|ZP_05650957.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
gi|257805468|gb|EEV34290.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
Length = 355
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE PS+K++ DA G P ++E + S+L L + S
Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLTLSLWQFFAASFLP 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LA + ++ + L L L P L+ + G+ + Q + +
Sbjct: 58 YFSRSLAQLADYQ-TSLADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348
>gi|206970587|ref|ZP_03231539.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
AH1134]
gi|228952152|ref|ZP_04114244.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229043525|ref|ZP_04191234.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
gi|229069320|ref|ZP_04202610.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
gi|229109225|ref|ZP_04238824.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
gi|229144382|ref|ZP_04272787.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
gi|229149974|ref|ZP_04278200.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
gi|206734223|gb|EDZ51393.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
AH1134]
gi|228633496|gb|EEK90099.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
gi|228639013|gb|EEK95438.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
gi|228674235|gb|EEL29480.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
gi|228713807|gb|EEL65692.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
gi|228725747|gb|EEL76995.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
gi|228807506|gb|EEM54033.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 348
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|229102368|ref|ZP_04233076.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
gi|228681015|gb|EEL35184.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
Length = 348
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 177/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASFTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 613
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 93/356 (26%), Positives = 179/356 (50%), Gaps = 20/356 (5%)
Query: 8 DNKTEAPSSKKIEDALNE---------GNAPISREASLFSSILACLIYLLFFFSPGIYSV 58
D KTE + G S++ S+ ++ AC + + + + +
Sbjct: 265 DEKTEEATP---------KKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTF 315
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L LA + + +++ F+ L L + + +P L M+ G+ + +IQ ++
Sbjct: 316 KGVLTYFLALPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMI 374
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+KPS +++ +G+K ++S +LV +K+ V + ++ + + NY +++ +
Sbjct: 375 TGEPLKPSLGKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISN 434
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
S+ V + + I L + + D + +LKM+KQEIKDE KQ+ G
Sbjct: 435 LYLPSLGSEIKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEG 494
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQN 297
+P +K + K R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG +
Sbjct: 495 DPQLKAKIKQKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGAD 554
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +++ IA ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K
Sbjct: 555 NVALRLKTIAKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610
>gi|68164507|gb|AAY87236.1| predicted flagellar biosynthetic protein [uncultured bacterium
BAC17H8]
Length = 385
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 82/358 (22%), Positives = 164/358 (45%), Gaps = 9/358 (2%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E KTE P+ ++++ A EG S+E +F+++ A L+ L SP + S
Sbjct: 1 MAEENQDGQEKTEEPTQRRLQKAAEEGRILTSKEVMVFTTLAAGLV-LFMGLSPFVASGL 59
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L + L+ + + + + LV+ L+ ++ + +
Sbjct: 60 DAWGSLFRIDSGFNLDTLGLVKVRYAFWLVILATLVVGMPLIVVIILTQAAV--GGLNFA 117
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ R+ G+KRI+S+ LV KS +K+ L+ I + + ++ S+
Sbjct: 118 AQAMNFKGNRIDPIAGLKRIFSVKGLVELAKSVLKVGLLFGIGALVIYHQLPQLVFLSSS 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + A ++ +L+ + + +D W H L+M+ +E+KDE KQ+ G+
Sbjct: 178 SLSQGVNRAAQAFPFLVGGLLIALLVIAAIDYAWQKHTHTQSLRMTLKEVKDESKQTEGS 237
Query: 240 PIIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
P ++ + + + + + + + AT ++TNPTH+A+AL+Y + APV++A
Sbjct: 238 PEVRAKIRRMQYQQAQESSRQREALGNVGDATTVVTNPTHFAVALKYAAGQEGAPVVLAM 297
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
G+ +A ++ + A E + P LAR+L+ I I Y AVA ++ ++
Sbjct: 298 GRGQMAMQIIERAKEARVRTLRIPMLARALYFTSEIGGEITEGLYNAVAVVLAYVFRL 355
>gi|119714987|ref|YP_921952.1| type III secretion exporter [Nocardioides sp. JS614]
gi|119535648|gb|ABL80265.1| type III secretion exporter [Nocardioides sp. JS614]
Length = 381
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 6/346 (1%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
K+E P++K+ ++ EG P S E +S++L ++L F I + + +
Sbjct: 3 GEKSEKPTAKRNKENRKEGQVPRSPEIGAWSALLLIAMFLPRLFGHEIDKLRELTTTMFS 62
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
SA D V LL +++ + GI L Q L VKP
Sbjct: 63 SAAD---ADAEIAVQLLGQGLWHVLLVLVVLGAGIAVVGIAGALGQGGFFLATKSVKPKL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G KRI+ L K ++ +V ++ +++ + + + +L
Sbjct: 120 SKLNPLPGFKRIFGPRALWEGTKMLIRSGIVALLVWLAVKSMLPLIGGLMPMSL--VLDQ 177
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
++ I + L D K +MSK E+K E KQS G+P++K +
Sbjct: 178 FASHALSMIRNIAVAGVLLGAADYLVQRKLMGKKTRMSKDEVKQEHKQSEGDPLLKGAIR 237
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
S + R++MM A +++ NPTH A+ALRY AP +VA+G +IA +R+ A
Sbjct: 238 SRQLAASRNRMMADVPTADVVLVNPTHVAVALRYEPER-GAPRVVARGAGVIAAAIREKA 296
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +P+ + LAR+L+ + IP + AVAQ++ + ++
Sbjct: 297 TEARVPLVRDVPLARALYTSTTVGQEIPTELFAAVAQVLAFVLSRR 342
>gi|39545582|gb|AAR26329.1| AscU [Aeromonas hydrophila]
Length = 352
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + IL+ + L+ + + + L
Sbjct: 2 SGEKTELPTPKKLRDARKKGQVVKSKEVVSTAIILSLIGMLMAMSDYYLEHLGKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L + +L +L + L IP L + ++ + S+ Q +L+ +KP
Sbjct: 59 IPESHLNLPFTQALNHVLENLMQEMAYLCIPLLGVSVLVVLISHFAQYGFLLSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ I++ N +L I
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWITIEGNLQALLQLPGCGMSCIPP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++
Sbjct: 179 VLGGMLSQLMAVCAMGFVVIAIADYAFEHYQHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ IN+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQ 343
>gi|30261773|ref|NP_844150.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Ames]
gi|49184607|ref|YP_027859.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
Sterne]
gi|49480930|ref|YP_035888.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143694|ref|YP_083139.1| flagellar biosynthesis protein FlhB [Bacillus cereus E33L]
gi|65319050|ref|ZP_00392009.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Bacillus
anthracis str. A2012]
gi|118477201|ref|YP_894352.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis str. Al
Hakam]
gi|165869563|ref|ZP_02214222.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0488]
gi|167633408|ref|ZP_02391733.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0442]
gi|167638766|ref|ZP_02397041.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0193]
gi|170686249|ref|ZP_02877471.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0465]
gi|170706530|ref|ZP_02896990.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0389]
gi|177650578|ref|ZP_02933545.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0174]
gi|190566254|ref|ZP_03019172.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
Tsiankovskii-I]
gi|196033476|ref|ZP_03100888.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
gi|218902883|ref|YP_002450717.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
AH820]
gi|225863627|ref|YP_002749005.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
03BB102]
gi|227815458|ref|YP_002815467.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. CDC 684]
gi|228914347|ref|ZP_04077962.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926805|ref|ZP_04089873.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933053|ref|ZP_04095916.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229183961|ref|ZP_04311176.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
gi|229602417|ref|YP_002866162.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0248]
gi|254683271|ref|ZP_05147132.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
CNEVA-9066]
gi|254723854|ref|ZP_05185640.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. A1055]
gi|254734624|ref|ZP_05192336.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
Western North America USA6153]
gi|254741033|ref|ZP_05198721.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Kruger
B]
gi|254755276|ref|ZP_05207310.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
Vollum]
gi|254759812|ref|ZP_05211836.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
Australia 94]
gi|291612214|ref|YP_003541028.1| flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames
Ancestor']
gi|301053307|ref|YP_003791518.1| flagellar biosynthesis protein [Bacillus anthracis CI]
gi|30256001|gb|AAP25636.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. Ames]
gi|47502154|gb|AAT30830.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178534|gb|AAT53910.1| flagellar biosynthetic protein FlhB, putative [Bacillus anthracis
str. Sterne]
gi|49332486|gb|AAT63132.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977163|gb|AAU18713.1| flagellar biosynthetic protein [Bacillus cereus E33L]
gi|118416426|gb|ABK84845.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
Hakam]
gi|164715003|gb|EDR20521.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0488]
gi|167513230|gb|EDR88601.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0193]
gi|167531446|gb|EDR94124.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0442]
gi|170128628|gb|EDS97495.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0389]
gi|170669946|gb|EDT20687.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0465]
gi|172083722|gb|EDT68782.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0174]
gi|190562389|gb|EDV16356.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
Tsiankovskii-I]
gi|195993910|gb|EDX57866.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
gi|218539660|gb|ACK92058.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
AH820]
gi|225789484|gb|ACO29701.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
03BB102]
gi|227006512|gb|ACP16255.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. CDC 684]
gi|228599486|gb|EEK57091.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
gi|228826654|gb|EEM72425.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832918|gb|EEM78487.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845341|gb|EEM90377.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229266825|gb|ACQ48462.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
str. A0248]
gi|300375476|gb|ADK04380.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
str. CI]
Length = 348
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|83594153|ref|YP_427905.1| flagellar biosynthesis protein FlhB [Rhodospirillum rubrum ATCC
11170]
gi|83577067|gb|ABC23618.1| Flagellar biosynthetic protein FlhB [Rhodospirillum rubrum ATCC
11170]
Length = 356
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 182/353 (51%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTE PSS+K+ A +G S+E F + L + V
Sbjct: 1 MAD-DDKDSKTEDPSSRKLGKAREDGQVAQSQEVKSFLMLGGALFMVAVMGGWIADKVAL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ V L L+ + L L L +P + +F++ I + Q + +
Sbjct: 60 RVRVFLEQPDTFHLDAVGLRDLLARLLLDIGLVLAMP-IAMFIVLAILGGVGQFGLIFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +++S G KR++S+ LV +K VK+++V I+ + T F+ +
Sbjct: 119 KKITPELQKISPLAGFKRLFSVRALVEGVKGIVKVVVVSAIVAALMLPRLRTPELFMDQD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + +LI ++ + + D + ++ +LKM+KQE+KDE K + G+P
Sbjct: 179 ILVTLGQIHRLLVVLLISVVTIVGAIAAADFAFQKYKHIEELKMTKQEVKDEHKNAEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++ + + R R +MM A+++ITNPTH+A+AL+Y APVLVAKGQ+ IA
Sbjct: 239 QIKSKIRQLRMRRARERMMARVPEASVVITNPTHFAVALKYDMDMMSAPVLVAKGQDFIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R++A E+ +PI E P LAR+LF V I+ IPP YKAVA++I + K
Sbjct: 299 LKIREVAEENEVPIVENPPLARALFAAVEIDHEIPPDHYKAVAEVIGYVMRLK 351
>gi|229178177|ref|ZP_04305548.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
gi|228605307|gb|EEK62757.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
Length = 348
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|145301466|ref|YP_001144305.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|38201232|emb|CAD56767.1| ascU protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947955|emb|CAE83092.1| AscU protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856348|gb|ABO92557.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 352
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 88/345 (25%), Positives = 176/345 (51%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + IL+ + L+ + + + +
Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + ++H+V +L + L IP L + ++ + S+ Q +L+ +KP
Sbjct: 62 SHINLPFTQALNHVVE---NLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML + I
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMNCITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++
Sbjct: 179 VLGSMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A + IP+ + LAR+L++ +N+ IP +A A+++ +
Sbjct: 299 AEDEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQ 343
>gi|229172415|ref|ZP_04299974.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
gi|228610886|gb|EEK68149.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
Length = 348
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ +P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSVPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|91200239|emb|CAJ73283.1| similar to flagellar biosynthetic protein FlhB [Candidatus Kuenenia
stuttgartiensis]
Length = 349
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 186/353 (52%), Gaps = 5/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ K+I + +G+ S + S +IL + L + +
Sbjct: 1 MADT----EKTEQPTGKRISEVRQKGSVAQSPDLSSAIAILVGFLLLYALGNIMYAGMKE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + +Q+ + IV + + ++++++P L ++ G+ +Q + L
Sbjct: 57 ITVFTLQNLSQKDI-TPDIIVEKIIYYIYVSAKILLPILGGLLIVGLIVSYMQTGLLFTL 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP ++++ G+K+++++ + V + S VK++L+G I + + + + + I
Sbjct: 116 KPLKPDLTKLNVISGVKKLFNVQSFVKLLFSVVKLLLIGGIGILYIKKELAKLDNLIDIG 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+++ + + + L ++D + Q+ +KMSK+E+KDE KQ+ G+P
Sbjct: 176 IAQFFILTTKLTFGLVMRVSIALVILAMVDYIYQKWQYKRGMKMSKKEVKDERKQAEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK++ +S +M A +A +++TNPTHYA+AL+Y + AP +VAKG + IA
Sbjct: 236 VIKSKIRSAQIQMALKRMASAIPKADVVVTNPTHYAVALKYDRKSMHAPKVVAKGADYIA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA + IPI EE SLAR+L+K V + IP Y AVA+++ +Y K
Sbjct: 296 LKIKEIAKINKIPIVEERSLARTLYKTVDVGKEIPQKLYYAVAKVLSYVYGLK 348
>gi|228958050|ref|ZP_04119785.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801567|gb|EEM48449.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 348
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342
>gi|51597656|ref|YP_071847.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
32953]
gi|170022952|ref|YP_001719457.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
YPIII]
gi|186896790|ref|YP_001873902.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
PB1/+]
gi|51590938|emb|CAH22594.1| Putative flagellar assembly/export protein, flhB [Yersinia
pseudotuberculosis IP 32953]
gi|169749486|gb|ACA67004.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
YPIII]
gi|186699816|gb|ACC90445.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
PB1/+]
Length = 377
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 3/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P++ K+ A +G+ P S++ ++ + ++ I L F V+ + A+Q
Sbjct: 12 PTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFLPYYKALVSQSFVSVAQLASQL- 70
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
D + +L + L+ +F + + LI + P K++S
Sbjct: 71 --DDQGALEQFLLANLFIFAKFLATLIPIPLFSMLATLIPGGWNFTPVKLIPDLKKLSPL 128
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
GIKRI+S +N +K K +V + + + + +L + + F
Sbjct: 129 AGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEEAITQGFAQYH 188
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+L+ + + +DI S+H + K+KM+KQE+K E K + GNP IK+R + + R
Sbjct: 189 HILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQY 248
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA +R IA +H I
Sbjct: 249 AIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYIRSIAQKHKIE 308
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I E P LAR+++ +N IP Y+A+AQ++ + K
Sbjct: 309 IVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348
>gi|89072287|ref|ZP_01158866.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
gi|89051819|gb|EAR57271.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
Length = 375
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ + +KTE + +KI A +G P +++ ++I +I +F I+ +
Sbjct: 1 MSQSTS-QDKTEKATPQKIRKAREQGQIPRAKD-FTAATIFIAVIVFFYFQIDVIWQALN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ L + L +L++P L ++ I S L+ +
Sbjct: 59 GVFKLNMTMSRDDLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L +
Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDTNLSRLLGMQNLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLIMTILFHGILLMGIALFLFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + I + R ++ +A +A ++I NPTHYA+A++Y T ++A +VAKG + A
Sbjct: 239 EIKQRIRQIQQQFARRQIDKAVPKADVVIVNPTHYAVAIKYDTTLSEALFVVAKGIDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ IA +H++ I P L R+++ I AIP Y AVA ++ + K
Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351
>gi|229029449|ref|ZP_04185532.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
gi|228731908|gb|EEL82807.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|309388837|gb|ADO76717.1| flagellar biosynthetic protein FlhB [Halanaerobium praevalens DSM
2228]
Length = 352
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTE P+SK+ ++A EGN +E ++LA ++L F + V +
Sbjct: 1 MAD-DGTGEKTEEPTSKRKKEAKEEGNVAKGKEIGQAITLLASFMFLYFLMQQIFFGVLN 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + I +L S + P +++ GI +Q +
Sbjct: 60 EIQYYFKNLI-IEPFTIKMTFEILYDAFFSVIEKIYPIMIVTAAAGILVNFLQIGALFTT 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P K+V +G K I+S+ +V +KS K+ L+ I L N I+
Sbjct: 119 KPLVPDLKKVDPIKGAKNIFSLKGVVELLKSLFKLALIAVIAYHFLMGNLDIFQKSINQG 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + ++ +++ + L +LD+ + Q LKMSK E+K E K+ G+P
Sbjct: 179 LEEALSAIAHLISRMAFAVIIALIILGILDLLYQRWQHNKDLKMSKYEVKQERKEMEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+I+ ++K R ++MM + A ++ITNPTH A+AL Y E +APV+VAKG++ +A
Sbjct: 239 MIQQQRKRRQREMSMNRMMSSVKDADVVITNPTHIAVALEYDLEEMEAPVIVAKGEDFVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+K+++ A E + I E LARSL K I +P Y+AVA+++ +I+
Sbjct: 299 QKIKEKAREAEVKIIENKPLARSLNKMSEIGDQVPIELYQAVAEILAEIFK 349
>gi|30019814|ref|NP_831445.1| flagellar biosynthesis protein FlhB [Bacillus cereus ATCC 14579]
gi|229127096|ref|ZP_04256093.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
gi|29895359|gb|AAP08646.1| Flagellar biosynthetic protein flhB [Bacillus cereus ATCC 14579]
gi|228656212|gb|EEL12053.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G I + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYIAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342
>gi|162417792|ref|YP_001604479.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
gi|162354812|gb|ABX88759.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
Length = 354
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KKI DA +G S+E + I+A L++ + + L
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMWLSDYYFEHFSKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q L + +++ ++ L L P L + + I S+++Q +++ +KP
Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI + LAR+L+ ++ IP +A A+++ +
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 341
>gi|229078951|ref|ZP_04211503.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
gi|228704365|gb|EEL56799.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|254720636|ref|ZP_05182447.1| flagellar biosynthesis protein FlhB [Brucella sp. 83/13]
gi|265985680|ref|ZP_06098415.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
gi|306837360|ref|ZP_07470239.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
gi|264664272|gb|EEZ34533.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
gi|306407552|gb|EFM63752.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
Length = 356
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 122/347 (35%), Positives = 202/347 (58%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFAAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + I + Q P
Sbjct: 61 FLRELIDHPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLASIAASAFQNAPRFVS 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+S +G +RI+ V F+KS K++ I+ + + D ++ +
Sbjct: 121 ERIHPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFSDAVATD 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 347
>gi|229096254|ref|ZP_04227227.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
gi|229115209|ref|ZP_04244619.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
gi|228668349|gb|EEL23781.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
gi|228687214|gb|EEL41119.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKS-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|324325787|gb|ADY21047.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 348
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|283850714|ref|ZP_06368001.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
gi|283573957|gb|EFC21930.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
Length = 357
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 168/355 (47%), Gaps = 6/355 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + + KTE + K+ + A +G+ P S+E + +LA L L ++
Sbjct: 1 MARDPS---KTEKATQKRRDKAREKGSVPRSQELPKLTVLLAGLFTLRLLIDDLGDALRE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + L+ LS + +++P LL+ + G + Q V
Sbjct: 58 VFTTFLGQRLAFEA-TPDGVNALMWLLSQKLAVMLLPLLLVMAVVGYVTQRWQVGEVWYS 116
Query: 121 NHVKPSFKRV-SLREGI-KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
P F + + I K + + LV K +G + L +
Sbjct: 117 RLFNPDFSNLFNPVAAIQKLLINPKTLVQLGKQVAMAAAIGLAPYLILKNKFDEFFPLFY 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ +++ L+ + + VLD+ ++ + LKM+K EIKDE KQ+ G
Sbjct: 177 QTTENFAAFLLGNGFILVLYTLVPMVIIAVLDVWYTRWDYEENLKMTKDEIKDETKQAIG 236
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK +QK ++ +M++ +A ++ITNPTH+A ALRY E+ AP+L+AKG +
Sbjct: 237 DPAIKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHFACALRYNPKESPAPLLLAKGADH 296
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A+K+++IA EH IPI E LA++L+K V I IP Y+AVA ++ ++ K
Sbjct: 297 LAEKIKEIAREHRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351
>gi|327478779|gb|AEA82089.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
Length = 380
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 166/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE ++ KTE S +K++ + ++G S++ + S+LA L+ L + +
Sbjct: 1 MSEQNSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAELFLDGMQQ 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ Q ++ I + +LTH +L V+ LLL + I L+ V
Sbjct: 61 SFSYSYINFQQSEI-GIDDLQVILTH-NLLVFISVLLPLLLTPILVIAFALVPGGWVFAS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+ R+ N KS +KI + I L ++ +
Sbjct: 119 KNFAPKFSKLNPITGLGRMVGAQNWSELAKSLLKISALLGIAAWQLYYAAPRLVALQRTD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + AF + I +LL + +DI + K++M+KQE K+E K G P
Sbjct: 179 IFNAIGGAFSLTFDLAISLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEEHKNQEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R K + R+ + ++ + A ++I NPTHYA+ALRY + + P ++A+G + +A
Sbjct: 239 EVKARIKQLQRALAQRQIAKVIKDADVVIVNPTHYAVALRYDPKKAETPFVIARGVDEMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+RK+A + + E P LAR+++ +N IP Y AVA ++ I K
Sbjct: 299 LYIRKMAQANGREVVELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQLK 351
>gi|226225721|ref|YP_002759827.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
gi|226088912|dbj|BAH37357.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
Length = 366
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 181/354 (51%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+++ KTE S K++E+A +G S E + + +L L+ F +
Sbjct: 1 MAESESGGEKTEEASGKRLEEAREKGQIAKSPEFATAAFLLGFLLVFSFTGPQLWRFLLD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ LA+A + + ++ + +S ++ + + + Q +L
Sbjct: 61 TMGTSLATAGDSE-HMGAGLIPWMQVISFRTIVAMLGAVAAMAVVAVAVQAAQTGGLLTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
+ P F+R++ RI ++V K+ +K+++VG + +++++ + + ++A
Sbjct: 120 KTLAPKFERLNPMSNAGRILGKQSIVELAKALLKMMIVGYAVYMTVSDAWPDLQALALNA 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P ++L ++ + L + D G+ + LKM+KQE+K+E K GN
Sbjct: 180 SPMALLEVVQKYGFALIKNAGMMFLVLAMADYGYQRWKTMEDLKMTKQEVKEEHKSQEGN 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K R+++IAR RIR +M A +A +II NP H A+A++Y AP +VA G+ I
Sbjct: 240 PEVKGRRRAIARERIRRQMFAAVPKADVIIVNPVHIAIAIKYDPNVAPAPYVVALGERKI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A++++++A++H +P+ E LAR+L K + + IP Y AVA+++ + ++
Sbjct: 300 AQRIKELAFQHGVPVIENKPLARALIKVAKVGTVIPVEMYLAVAEVLAFVMRQR 353
>gi|254488460|ref|ZP_05101665.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
gi|214045329|gb|EEB85967.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
Length = 361
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 96/356 (26%), Positives = 165/356 (46%), Gaps = 3/356 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ +++K+ +A +G+ S + + + + S GI +++
Sbjct: 1 MSGEDDDSDKSFEATAEKLLEARRKGDIAKSTDLMTAAGYAGLFVAFAYVGSEGIALIST 60
Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L VLL + + + L +S +P LL + + + QR V
Sbjct: 61 ALMVLLDQPDRLIDIFFDGSAAAPASGLIISIILPALPIFLLPAIAVLVAIAAQRAFVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + P R+SL K + N L F KSF K+ + + + + N M+ +
Sbjct: 121 PSKIAPKLSRISLISNAKNKFGRNGLFEFAKSFFKLCIYSICLVLFIRANLHEMIAALQT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P S + L++ +L AT+ +D W + + K +MS++EI+DE K S G+
Sbjct: 181 DPASAISLMIEICLSFLLVTILISATIGGIDALWQHFEHLRKNRMSRKEIQDEQKNSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A + +MM +A +II NPTHYA+AL++ + +APV VAKG + I
Sbjct: 241 PHLKQERRQRAMIVSQSQMMADVPKADVIIVNPTHYAVALKWSRLPGEAPVCVAKGVDEI 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK--IYHKK 353
AK +R E +P+ +P AR+L I I P ++AVA I K
Sbjct: 301 AKAIRLKGAEAGVPLHSDPPTARALHATTDIGDMIAPEHFQAVAAAIRFAEAMRLK 356
>gi|56551546|ref|YP_162385.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543120|gb|AAV89274.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ZM4]
Length = 380
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y +
Sbjct: 1 MTDSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L + L+ + L +L I + +
Sbjct: 61 IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ +R++ G R++ + L KS VK++L+G++ L + ++
Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + + +++++ + +A + +D+ + +L+MSKQEIKDE KQ+ G+
Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK + + R +A +T++ITNPTH+A+AL+Y E+ AP++ AKG + +
Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A +R++A E ++P+ P LAR+++ I YKAVA ++ I+
Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351
>gi|110632668|ref|YP_672876.1| flagellar biosynthesis protein FlhB [Mesorhizobium sp. BNC1]
gi|110283652|gb|ABG61711.1| flagellar biosynthetic protein FlhB [Chelativorans sp. BNC1]
Length = 363
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 135/350 (38%), Positives = 217/350 (62%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTE + KKI D + +G P SREA + +S LA L++++FF +
Sbjct: 1 MAEGADKESKTEEATEKKIRDTVEKGQLPFSREAPVLASFLAILVFVVFFAEDRAVQLAG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + A L+ + + + + L ++V +LL + G+ + ++Q P L
Sbjct: 61 FLAIFIERADGWSLKTQTDAIAIYRIVFLQIGKVVGIVMLLLVAAGVSASILQNTPRFVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P RVSL +G R++ LV F KS K+++VG ++ +L +L + +
Sbjct: 121 ERIQPKLSRVSLAKGWSRLFGTRGLVEFAKSVGKMLVVGALVAFTLRHADTRLLSGMVTH 180
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + V +LI I LF+ + V D+ WS W L+MS+QE+KDE KQ+ G+P
Sbjct: 181 PVAFTVTIRDLVINILIAIALFMTLVAVADLVWSRFSWRQDLRMSRQEVKDEQKQTDGDP 240
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ R +S+AR R R +MM A +AT++I NPTHYA+ALRY + ++ APV+VAKGQ+L+A
Sbjct: 241 LMRARLRSVARDRARRRMMSAIPQATLVIANPTHYAIALRYQRDKDAAPVVVAKGQDLVA 300
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R++A EHNIP+FEEP+LARS++KQV ++S IPP FYKAVA+L+ ++Y
Sbjct: 301 LRIRELAREHNIPVFEEPALARSMYKQVSVDSLIPPQFYKAVAELVRRVY 350
>gi|229132597|ref|ZP_04261445.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
gi|228650829|gb|EEL06816.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
Length = 348
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAH 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVLKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDRAIPEDLYVAVIEVMRYLIQ 342
>gi|126738573|ref|ZP_01754278.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
gi|126720372|gb|EBA17078.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
Length = 360
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 84/354 (23%), Positives = 165/354 (46%), Gaps = 2/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++D D K+ P+ +K++ A +G S + S+ ++ L ++ + + +
Sbjct: 1 MSQDDDSD-KSFEPTPQKLQKAREKGEVAKSTDLSVAAAYLGLVLAFYAVGADMVAGTGT 59
Query: 61 DLHVLLASATQRKLEDI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L + + + L + + +IP L+ + + S L Q+ V
Sbjct: 60 VLMTFFDQPDRLAQQLFYGGGTAPVGGLLTAIATPLIPLFLIPAVLVLLSILGQKALVFA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P ++S+ K L F KS K+ + + + LT M+ +
Sbjct: 120 PSKLEPKLSKISIISNAKNKLGRAGLFEFGKSAFKLTIYSICLGVYLTHRMPEMIASVGT 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S++ + L++ LL + V+D + + + K MS++EI+DE K S G+
Sbjct: 180 GAFSVIKLLSELGMEFLVIALLVSLPIGVVDAVFQHAEHRRKNMMSRKEIQDEQKNSEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K +++ A++ +MM A A++++ NPTHYA+AL++ AP+ VAKG + +
Sbjct: 240 PHMKAKRRQKAQAIALGQMMGAVPDASVVVVNPTHYAVALKWEGGAGTAPICVAKGVDEV 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +R++A E+ +PI +P AR+L+ + I + Y VA I +
Sbjct: 300 AAAIRQVANENAVPIHSDPPTARALYATIEIGEEVMEEHYAPVAAAIRFAEEMR 353
>gi|291276831|ref|YP_003516603.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
gi|290964025|emb|CBG39864.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
Length = 364
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 167/353 (47%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ K EAPS++KI+ A EGN S E F S + + + F + ++
Sbjct: 1 MADE---QEKQEAPSARKIQKAREEGNVAKSPELVAFVSFVIGIFAVFGIFPFWLQNIKG 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + L L +++P L + G+ +IQ +L
Sbjct: 58 IYITCLQFFSME--FSLGNFFDLFLKLLWQTLLIILPVLGALLFAGVFGNIIQVGFLLAP 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ G+K ++S L+ + +K+ + + L + + N
Sbjct: 116 KVLQPKLGKLNPIAGLKNLFSFKKLLEGLLITLKVFVAFLLGGAILIHFLRQIPNVAMLN 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S ++ +L+ + ++D Q+ L+MSKQE+KDE KQ GNP
Sbjct: 176 VFSQAIWVRDKALILIASLLVLFFVMAIIDFLIKKFQYTKSLRMSKQELKDEYKQQEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + I KMM+A A +++TNPTHYA+ALR+ + AP++VAKG + +A
Sbjct: 236 EVKAKIRQIMMKNTMGKMMQAIPNADVVVTNPTHYAIALRFAPN-DPAPIVVAKGIDHLA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA E+ I I E P LAR+L+KQV + IP ++AVA + K
Sbjct: 295 IRIKGIARENEIEIVENPKLARALYKQVDLEEPIPRELFEAVAIIFA---QLK 344
>gi|3435112|gb|AAC32325.1| flagellar protein FlhB [Rhodobacter sphaeroides]
Length = 376
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 159/357 (44%), Gaps = 8/357 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P+ K+ E A +G+ S+E +F+++ L LL + ++
Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGL-ALLMMIEGLLPALVR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LE I+ + L + + + + +
Sbjct: 60 GWSGYLVIEPGADLERIAMV--RLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGINFST 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR+ S+ LV K+ K+ L+ + + L + + +A
Sbjct: 118 KALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLWTAA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S G+P
Sbjct: 178 PGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESNGSP 237
Query: 241 IIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
+K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++A G
Sbjct: 238 EVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVILAMG 297
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ +A + + + + P LAR+L+ I IP AVA ++ +Y
Sbjct: 298 KGPMALDIIERGRKAGVGTVRIPLLARALYFTGDIGQEIPDGLDGAVAVVLAHVYRL 354
>gi|254255044|ref|ZP_04948361.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
gi|124899689|gb|EAY71532.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
Length = 379
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 2/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + +KTE + +K+ A G SR+ + L L + +
Sbjct: 1 MSGGQSTGDKTEKATPQKLRKAKQRGQVARSRDIATAIGTLVSLKLAIVLAPAWLDDFRR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + H + L +L ++ + L V +
Sbjct: 61 LFAASL--VERFADGGAEHAMSTLFVTALLLIGKMLAPFAAVPACIVVGSLFPGGWVFSH 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +R++ G+KR+ S + + + K ++G + + +
Sbjct: 119 ENFMPKAERLNPMSGLKRLVSGKHYMQLAITVAKATVLGATLWHVGRSSIDRFVGLQRVP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++++ + ++D+ + +MSK+++KDE+KQS G P
Sbjct: 179 FETALAGGAALFVDATLVLVGVLVAFAMIDVPLQRMLFMRGQRMSKRDVKDEMKQSEGKP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I R R + + A +++ NPTHYA+AL+Y ++ AP +VAKG + A
Sbjct: 239 EVKGRIRQIQRQMARRGIRKVVPDADVVLMNPTHYAVALKYDVSKAQAPYVVAKGIDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+R +A EH I + E P LAR+++ +N IP Y+AVA++++ +
Sbjct: 299 HFIRDVAREHAIEVLELPPLARAIYHSSQVNQQIPAALYQAVAKVLFYVLQI 350
>gi|224825749|ref|ZP_03698853.1| type III secretion exporter [Lutiella nitroferrum 2002]
gi|224601973|gb|EEG08152.1| type III secretion exporter [Lutiella nitroferrum 2002]
Length = 380
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 153/353 (43%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E +KTE + K+ A +G SR+ + +L L +
Sbjct: 1 MAE-TRGGDKTEKATPHKLRQARQQGQVARSRDMASAIGLLVALKLAFLSMPGWLDDFRR 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + + + + +L +L+ +I L + + L V
Sbjct: 60 LFALSFATLSGQGA--LGNTWSMLFSGTLTLLVKMILPLAVIPLLVATVSLFPGGWVFAS 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
H +P R++ RI S + + KS VK +++G ++
Sbjct: 118 RHFQPRLDRLNPLAHFGRIASPQHASDIAKSIVKALVLGAVLYHVSRGAAQDFFALQGVP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A + L+ + ++D+ + + +MSKQEIKDE K + G P
Sbjct: 178 LDEALSRAASLLMDALLALTAVFIAFALIDLPLQTLLFLRQQRMSKQEIKDEYKTTEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK R + + + + ++ A ++I NP+HYA+AL+Y + +AP ++AKG + +A
Sbjct: 238 EIKQRVRQLQLQMAQRGVRKSVPTADVVIVNPSHYAVALKYDEDRAEAPFIIAKGIDEMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LYIRQVAAEHAVEVLPIPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350
>gi|10955567|ref|NP_052408.1| YscU [Yersinia enterocolitica]
gi|332163589|ref|YP_004424931.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|4324354|gb|AAD16831.1| YscU [Yersinia enterocolitica W22703]
gi|318608194|emb|CBY78168.1| type III secretion inner membrane protein
(YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
export components) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667819|gb|ADZ44462.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 354
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KKI DA +G S+E + I+A L+ ++ + L
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTTLIVALSAMLMGLSDYYFEHLSRLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q L + +++ ++ L L P L + + I S+++Q +++ +KP
Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI
Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI + LAR+L+ ++ IP +A A+++ +
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 341
>gi|28373013|ref|NP_783682.1| YscU [Yersinia enterocolitica]
gi|32470295|ref|NP_863530.1| YscU [Yersinia enterocolitica]
gi|122815819|ref|YP_001004085.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|14579353|gb|AAK69230.1|AF336309_25 YscU [Yersinia enterocolitica]
gi|23630585|gb|AAN37541.1| YscU [Yersinia enterocolitica]
gi|121663693|emb|CAL10055.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|310923238|emb|CBW54704.1| YscU, T3SS component, autocleavable regulator,PMID 19165725
[Yersinia enterocolitica (type O:8)]
Length = 354
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KKI DA +G S+E + I+A L+ ++ + L
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHLSRLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q L + +++ ++ L L P L + + I S+++Q +++ +KP
Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI
Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI + LAR+L+ ++ IP +A A+++ +
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 341
>gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum B str. Eklund 17B]
gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B
str. Eklund 17B]
Length = 613
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 92/356 (25%), Positives = 178/356 (50%), Gaps = 20/356 (5%)
Query: 8 DNKTEAPSSKKIEDALNE---------GNAPISREASLFSSILACLIYLLFFFSPGIYSV 58
D KTE + G S++ S+ ++ AC + + + + +
Sbjct: 265 DEKTEEATP---------KKKSDSKKKGQMARSKDVSVAITMAACTLAVSMLWGSLVDTF 315
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L L + + +++ + L++ L + + +P L M+ G+ S +IQ ++
Sbjct: 316 KGVLTYFLVFPSLKDFNELTAM-SLISFSLLKVATVFLPFALAIMIAGVASSIIQTGFLI 374
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+KPS +++ +G+K ++S +LV +K+ V + ++ + + NY +++ +
Sbjct: 375 TGEPLKPSLGKINPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISN 434
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
S+ V + I L + + D + +LKM+KQEIKDE KQ+ G
Sbjct: 435 LYLPSLGDEIKNLVIGIFKQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEG 494
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQN 297
+P +K + K R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG +
Sbjct: 495 DPQLKAKIKQKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGAD 554
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +++ IA ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K
Sbjct: 555 NVALRLKTIAKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610
>gi|16082735|ref|NP_395181.1| needle complex export protein [Yersinia pestis CO92]
gi|31795273|ref|NP_857735.1| needle complex export protein [Yersinia pestis KIM]
gi|31795476|ref|NP_857930.1| needle complex export protein [Yersinia pestis KIM]
gi|45478537|ref|NP_995364.1| putative type III secretion protein YscU [Yersinia pestis biovar
Microtus str. 91001]
gi|51593916|ref|YP_068483.1| yscU; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108793657|ref|YP_636807.1| type III secretion protein [Yersinia pestis Antiqua]
gi|149192692|ref|YP_001293924.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|165927774|ref|ZP_02223606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940072|ref|ZP_02228606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011729|ref|ZP_02232627.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214469|ref|ZP_02240504.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401916|ref|ZP_02307402.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422435|ref|ZP_02314188.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422465|ref|ZP_02314218.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422883|ref|ZP_02314636.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426855|ref|ZP_02318608.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897581|ref|YP_001874692.1| YscU/HrpY family type III secretion protein [Yersinia
pseudotuberculosis PB1/+]
gi|229896863|ref|ZP_04512023.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900218|ref|ZP_04515354.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491102|ref|ZP_06208174.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
D27]
gi|294496841|ref|YP_003560538.1| needle complex export protein [Yersinia pestis Z176003]
gi|322836573|ref|YP_004210069.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
gi|57015240|sp|P69986|YSCU_YERPE RecName: Full=Yop proteins translocation protein U
gi|57015241|sp|P69987|YSCU_YERPS RecName: Full=Yop proteins translocation protein U
gi|475126|gb|AAA27681.1| yscU [Yersinia pseudotuberculosis]
gi|2996233|gb|AAC62556.1| Yop proteins translocation protein U homolog [Yersinia pestis KIM
10]
gi|3822064|gb|AAC69784.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832467|emb|CAB54924.1| putative type III secretion protein [Yersinia pestis CO92]
gi|45357159|gb|AAS58555.1| putative type III secretion protein YscU [Yersinia pestis biovar
Microtus str. 91001]
gi|51591613|emb|CAF25417.1| yscU; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782204|gb|ABG16259.1| type III secretion protein [Yersinia pestis Antiqua]
gi|148872350|gb|ABR14840.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|165911982|gb|EDR30625.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920210|gb|EDR37511.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989336|gb|EDR41637.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204362|gb|EDR48842.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958173|gb|EDR55194.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958672|gb|EDR55693.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958702|gb|EDR55723.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048644|gb|EDR60052.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054154|gb|EDR63981.1| type III secretion appartus protein YscU [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700607|gb|ACC91235.1| type III secretion protein, YscU/HrpY family [Yersinia
pseudotuberculosis PB1/+]
gi|229686738|gb|EEO78818.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700134|gb|EEO88173.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|262363852|gb|ACY60572.1| needle complex export protein [Yersinia pestis D106004]
gi|262364009|gb|ACY64346.1| needle complex export protein [Yersinia pestis D182038]
gi|270334845|gb|EFA45624.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
D27]
gi|294352429|gb|ADE66486.1| needle complex export protein [Yersinia pestis Z176003]
gi|317374477|gb|ADV16652.1| type III secretion inner membrane protein [Yersinia pestis]
gi|321161347|gb|ADW67053.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
Length = 354
Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 176/343 (51%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KKI DA +G S+E + I+A L+ + + L
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q L + +++ ++ L L P L + + I S+++Q +++ +KP
Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI + LAR+L+ ++ IP +A A+++ +
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 341
>gi|167574623|ref|ZP_02367497.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
C6786]
Length = 375
Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 156/353 (44%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + +
Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+LA ++ + ++ + + A VIP ++ L V
Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIA------GSLFPGGWVFAS 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ KP R+S + ++ S + F S K + ++ L +
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H + + L I +D+ + + +M+KQE+KDE K + G P
Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG + +A
Sbjct: 234 EVRSRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A H + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346
>gi|167567199|ref|ZP_02360115.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
EO147]
Length = 375
Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 155/353 (43%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + +
Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+LA ++ + ++ + + A VIP ++ L V
Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIA------GSLFPGGWVFAS 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ KP R+S + ++ S + F S K + ++ L +
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ H + + L I +D+ + + +M+KQE+KDE K + G P
Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++ R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG + +A
Sbjct: 234 EVRGRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A H + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346
>gi|170748648|ref|YP_001754908.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
JCM 2831]
gi|170655170|gb|ACB24225.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
JCM 2831]
Length = 355
Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats.
Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 2/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
PS ++++ A+ G+ S E + F+ + A + LL ++ L LA+A
Sbjct: 14 PSQRRLDQAIERGDVATSTEINTFAMLGAFTLALLVAAPTIATNLLHGLKAYLANAHALP 73
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
+ + + L L + +P L + G+ + L+Q V + + P F R+S
Sbjct: 74 DDAAAMKAAMTRGLWLWLQAVAVPVGLAVV-AGLAAGLLQHPLVFSAETLMPKFSRLSPM 132
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
G+KR+ + L F K KI VG + + L + + F +P + +
Sbjct: 133 AGVKRLLGVEALFQFGKGLAKIAAVGVVGAVMLWNDRDRLEVFARLDPAASMPAILSLSL 192
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
K+L +L +T+ D ++ +W + +MSK+E+K E+K+S GNP +K R K + +R
Sbjct: 193 KLLAGMLCMHLAITLGDALYARFRWRKRHRMSKEELKQEMKESEGNPEVKGRLKQLRMAR 252
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
++ +MM A AT+++TNPTHYA+ALRY APV VAKG + +A ++R +A EH +
Sbjct: 253 VKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDALALRIRAVAAEHGVA 311
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ E P LAR+L V I+ IP Y+AVA++I + +
Sbjct: 312 VIENPPLARALHATVEIDREIPAEHYRAVAEVIGFVLRLR 351
>gi|229011062|ref|ZP_04168256.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
gi|228750234|gb|EEM00066.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
Length = 348
Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAH 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVLKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDQ 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + IP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344
>gi|160896049|ref|YP_001561631.1| type III secretion exporter [Delftia acidovorans SPH-1]
gi|160361633|gb|ABX33246.1| type III secretion exporter [Delftia acidovorans SPH-1]
Length = 391
Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 172/349 (49%), Gaps = 1/349 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D+ +K+ + +K++ ++G SR+ S + + + +L P I + L
Sbjct: 2 DSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQHLRMALAQ 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LA + + ++ + + ++ + + + S ++ +L+L ++
Sbjct: 62 QLA-FDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILSLKPIQ 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P F R++ G+ ++S +V +K V ++ + L+ + + S
Sbjct: 121 PQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAILSFVAWKFLSSHLAEIAAISSQPSAMA 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L + + ++LL + + V+D+ + + S+LKMS +E+K E K+S GNP IK+
Sbjct: 181 LSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDGNPQIKS 240
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ + R + A RA ++TNPTHYA+ALRY + AP +++KG +L+A K+R
Sbjct: 241 KIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDLVALKIR 300
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 301 EVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349
>gi|157738150|ref|YP_001490834.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
gi|315636293|ref|ZP_07891543.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
gi|157700004|gb|ABV68164.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
gi|315479382|gb|EFU70065.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
Length = 349
Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 180/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + KTE P+SKK+EDA NEGN S E S + I+LLFF + +
Sbjct: 1 MA---DDEEKTEEPTSKKLEDAKNEGNVSKSMEVVGASILTFGSIFLLFFSGSSMLEIKK 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + Q D + + ++ + + P +L ++ G+ Q
Sbjct: 58 LMMLSYNFIGQEM--DGPLYYAITYTVVITLLKALAPLFILVILLGLVGNWAQ--FGFIS 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +++ +G+K I+ + L+ +K +K+ ++ T++ I + Y L ++
Sbjct: 114 IPLKFDLQKLDPIKGLKNIFGLKKLLEALKLSLKLAIIITVMFIIFSLTYNEFLAMMNKE 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + IL I ++D +S + + LKMSKQEIKDE K G+P
Sbjct: 174 TMATISSMLQLTIYFIFTILFIIIIFAIMDFYFSKYYYMKSLKMSKQEIKDEYKNMEGDP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I + +MM A ++ITNPTHYA+AL+Y N APVLVAKG + +A
Sbjct: 234 QVKGRIRRIQMQMAQKRMMGNVPNADVVITNPTHYAVALKYDNKVNSAPVLVAKGIDFLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K++ IA E+N+ I E P+LAR+L+ Q+ ++ IP FYKA+A++ +Y K
Sbjct: 294 LKIKDIAKENNVTIIENPALARALYDQIEVDKEIPNQFYKAIAEIFSYLYELK 346
>gi|206974845|ref|ZP_03235760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
H3081.97]
gi|217959252|ref|YP_002337800.1| flagellar biosynthesis protein FlhB [Bacillus cereus AH187]
gi|206746864|gb|EDZ58256.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
H3081.97]
gi|217068144|gb|ACJ82394.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
AH187]
Length = 348
Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 180/351 (51%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342
>gi|229166624|ref|ZP_04294376.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
gi|228616878|gb|EEK73951.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
Length = 348
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAH 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVLKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + IP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344
>gi|229058418|ref|ZP_04196802.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
gi|228719927|gb|EEL71517.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
Length = 348
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAH 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVLKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R +A E IP+ E LARSL+ QV + IP Y AV +++ + K
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344
>gi|229017055|ref|ZP_04173974.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
gi|229023236|ref|ZP_04179746.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
gi|228738030|gb|EEL88516.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
gi|228744228|gb|EEL94311.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
Length = 348
Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 180/351 (51%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + + L + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVVALFDQIGKN-----TDVTEYLYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHALLQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342
>gi|120609156|ref|YP_968834.1| type III secretion system protein HrcU [Acidovorax citrulli
AAC00-1]
gi|58700626|gb|AAW81017.1| HrcU [Acidovorax citrulli]
gi|120587620|gb|ABM31060.1| type III secretion protein, YscU/HrpY family [Acidovorax citrulli
AAC00-1]
Length = 352
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G S++ + + A L+ L V + L
Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQ 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ LL+ ++L + +++ ++ + + L Q ++ + P F
Sbjct: 63 GVR--VHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + K+ L + LD G + + +MSK ++K E K S G+P +K KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ E AT+++TNPTHYA+ALRY P++VAKG + A +R +A
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
H+IP+ P LAR+L K +P++ IP ++AV+ ++ +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340
>gi|83647785|ref|YP_436220.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
2396]
gi|83635828|gb|ABC31795.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
2396]
Length = 351
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 88/346 (25%), Positives = 167/346 (48%), Gaps = 3/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S++ ++I A + LL + ++ + +
Sbjct: 2 SDEKTEKPTPKKLRDARKKGQVAHSKDVVSTATICAMFLLLLATSDTYLSHLSILIELPA 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ LE + +V ++ L + + + M I + +Q + + +KP
Sbjct: 62 QYMDRPFLEALPMVVD---NVIYELIYLTLMPVGVVMASAILANFLQVGALFAVESLKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+ + N + F+KS +K+ ++ ++ + + +N I
Sbjct: 119 LKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKDNLNDSARLHYCEVECIPD 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++++++ + L D Q+ + KMSK E+K E KQ G+P IK ++
Sbjct: 179 FVGTLLKQLILYSAITFIALAAADFFIQKQQFIKQQKMSKDEVKREYKQMEGSPEIKGKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K I R + + + + I+TNPTH A+ + Y + D P ++ KG + +AK +RKI
Sbjct: 239 KQIHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKGADQMAKVIRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A E IP+ E LAR L+K+ +N +PP ++AVA ++ +
Sbjct: 299 AEEEGIPMMENVPLARGLWKRAQVNDYVPPDLFEAVAAVLQWVDSL 344
>gi|317153078|ref|YP_004121126.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
gi|316943329|gb|ADU62380.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
Length = 353
Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 177/355 (49%), Gaps = 6/355 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ + KTE ++K+ + NEGN P S E + +L ++ L
Sbjct: 1 MAQDPS---KTEKATTKRRKRTRNEGNVPKSSELTKAIVLLMGVLTLRSLIGFYQDQFIE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
KL D S L + +V+P L + + +Q +
Sbjct: 58 IYEWTFREGIHTKL-DPSTTYALFVWGVKKLAIIVLPLLFVLAFTAWLTLRLQVGGLWTT 116
Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+KP F ++ ++ G+KR+ S V +S ++ + VG I + + +L
Sbjct: 117 KPMKPKFAKMFNIVAGLKRLLISPQAFVRLGRSILQALAVGIAPYIVIKQELPNLLPLFH 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
A+ H I+ + K+ L+ + + + D+ +S ++ +KM+K EIKDE +Q+ G
Sbjct: 177 ASTHGIIAYILGVGYKMACYALVPMLLIAIADLWYSRWKYEEGIKMTKDEIKDERRQAEG 236
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK +Q+ + +M + +A ++ITNPTH+A+AL+Y AP+++AKG N
Sbjct: 237 DPHIKRKQQQKMLQMMASRMFKDIPKADVVITNPTHFAVALQYDALVAPAPLVLAKGVNR 296
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A++++++A E++IPI P LAR+L+KQV I IP ++AVA ++ K+ K
Sbjct: 297 VAERIKEVARENSIPIEVNPPLARALYKQVEIGETIPEEMFQAVAAILAKLDKFK 351
>gi|330505669|ref|YP_004382538.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
gi|328919955|gb|AEB60786.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
Length = 377
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S+ K++ + ++G S++ S S++A L L F + +
Sbjct: 1 MSEQSSGQEKTEEASAHKLKKSKDDGQVARSKDLSTTISLIATLFILKFSAGLFLEGLND 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + + LL + L +L+ P LL ++ + S + V +
Sbjct: 61 SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLAPLLLTSLLVVVLSLVPGG-WVFSA 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+ RI+S N +KS +K++++ + + + ++ ++
Sbjct: 119 KNFAPKFSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPDLIALQRSS 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ AF + + ++L + +DI + + KL+M+KQE K+E K G P
Sbjct: 179 VLEAVSAAFDLTFNLTLCLMLIFVVFSFIDIPLQRYFFLKKLRMTKQERKEEHKNQEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R K + R ++ ++ A ++I NPTHYA+AL+Y + AP ++AKG + A
Sbjct: 239 EVKARIKQLQRQMLQRQISRVIKNADVVIVNPTHYAVALKYDTQKAAAPFVLAKGVDETA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A +H++ + E P LAR+++ IN IP Y AVA ++ I K
Sbjct: 299 LYMRQMAAKHSLEVVEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351
>gi|167576637|ref|ZP_02369511.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
TXDOH]
Length = 379
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + +
Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T +++ SL+ +I + + + L+ +L+
Sbjct: 60 LFLLDLVDVTGDGA--LANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPGGWMLSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
H+KP F R++ + R+ S + F S +K + + ++ L
Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + + D+ + + +M+KQE+KDE K + G P
Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350
>gi|163781850|ref|ZP_02176850.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
gi|159883070|gb|EDP76574.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
Length = 351
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 186/354 (52%), Gaps = 8/354 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +NKTE + + EGN S E + S+L + + F + V +
Sbjct: 1 MA----QENKTEKATPYRRRKLKQEGNVAKSVEIASSLSVLISSLIIFFTGALIFKEVVA 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +A + R E + S +L++P ++ ++ IG+++ Q + L
Sbjct: 57 FL---IAISGLRPAEFSILAGTTIKDSFTSIVKLLVPFFVVTILVVIGAHVAQFGFIFTL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ ++R++ EGIK++ SI L K+ +K L+ I L + +L+
Sbjct: 114 KPLQFKWERLNPVEGIKKMVSITTLFELSKNTLKASLLFGIALFILKGSVSLILNSAQMP 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + KV++++ + + +LD + + +++MSKQE+K+E KQ G P
Sbjct: 174 LLEGVNFLIDLLIKVVLILGVIAFLIALLDFAYKKWDYERRIRMSKQEVKEEFKQLEGQP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + K+ R R +MM +A+++ITNPTHYA+ALRY ++ APV+VAKG+ +A
Sbjct: 234 EVKAKVKARMREMARGRMMAEVPKASVVITNPTHYAIALRYDAEKDRAPVVVAKGKGTLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI-YHKK 353
+++ K+A E+ +P+ +P LAR+++ V + IPP FY+AVA++I I + KK
Sbjct: 294 ERIIKVAEENEVPVIRKPELARAMYSAVDVGDEIPPEFYRAVAEIIAFITFRKK 347
>gi|46398249|gb|AAS91803.1| AscU [Aeromonas hydrophila]
Length = 352
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK+ DA +G S+E + IL+ + L+ + + + L
Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLIAMSDYYLEHLGKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ L + ++ +L + L IP L + ++ + S++ Q +L+ +KP
Sbjct: 59 IPASHINLPFTEALNHVVENLMQEMAYLCIPILAVAVLVVLVSHIAQYGFLLSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K V+ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML +
Sbjct: 119 IKHVNPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWVTIEGNLQAMLQLPGCGMSCVAP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++
Sbjct: 179 VLGGMMGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M R+++I+ NPTH A+ + Y + E PV+ K + A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGILYERGETPLPVVTLKFTDAQALQVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ IN+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQINNYIPADQIEATAEVLRWLEQ 343
>gi|83716504|ref|YP_438366.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
E264]
gi|167614812|ref|ZP_02383447.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
Bt4]
gi|257141397|ref|ZP_05589659.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
E264]
gi|83650329|gb|ABC34393.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
E264]
Length = 379
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + +
Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T +++ SL+ +I + + + L+ +L+
Sbjct: 60 LFLLDLVDVTGDGA--LANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPGGWMLSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
H+KP F R++ + R+ S + F S +K + + ++ L
Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + + D+ + + +M+KQE+KDE K + G P
Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350
>gi|326315337|ref|YP_004233009.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372173|gb|ADX44442.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 352
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G S++ + + A L+ L V + L
Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ LL+ ++L + +++ ++ + + L Q ++ + P F
Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGKIA 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + K+ L + LD G + + +MSK ++K E K S G+P +K KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ E AT+++TNPTHYA+ALRY P++VAKG + A +R +A
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
H+IP+ P LAR+L K +P++ IP ++AV+ ++ +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340
>gi|196039022|ref|ZP_03106329.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
NVH0597-99]
gi|196030167|gb|EDX68767.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
NVH0597-99]
Length = 348
Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342
>gi|296502370|ref|YP_003664070.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
gi|296323422|gb|ADH06350.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
Length = 348
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342
>gi|228907402|ref|ZP_04071260.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
gi|228938882|ref|ZP_04101482.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228964753|ref|ZP_04125860.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971763|ref|ZP_04132384.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978372|ref|ZP_04138749.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
gi|228781389|gb|EEM29590.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
gi|228787853|gb|EEM35811.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228795003|gb|EEM42502.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228820731|gb|EEM66756.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228852263|gb|EEM97059.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
gi|326939382|gb|AEA15278.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 348
Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF Y + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342
>gi|222095392|ref|YP_002529452.1| flagellar biosynthesis protein flhb [Bacillus cereus Q1]
gi|228945372|ref|ZP_04107727.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|221239450|gb|ACM12160.1| flagellar biosynthetic protein [Bacillus cereus Q1]
gi|228814344|gb|EEM60610.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 348
Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 9/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A
Sbjct: 232 QVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+R +A E IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 292 LYIRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342
>gi|145597135|ref|YP_001154599.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|145212903|gb|ABP42309.1| type III secretion protein [Yersinia pestis Pestoides F]
Length = 354
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KKI DA +G S E + I+A L+ + + L
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSNEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q L + +++ ++ L L P L + + I S+++Q +++ +KP
Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI + LAR+L+ ++ IP +A A+++ +
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 341
>gi|188992470|ref|YP_001904480.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
campestris str. B100]
gi|167734230|emb|CAP52438.1| type III secretion system protein [Xanthomonas campestris pv.
campestris]
Length = 357
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + +
Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
AT + D + + L + + L +P + + G+ +Q +L V P
Sbjct: 62 DFATNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K ++G ++ L T++ P I
Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + +L + D + + +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L +V + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341
>gi|89111188|dbj|BAE80277.1| HrcU [Acidovorax avenae subsp. avenae]
Length = 352
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G S++ + + A L+ L V + L
Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ LL+ ++L + +++ ++ + + L Q ++ + P F
Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + K+ L + LD G + + +MSK ++K E K S G+P +K KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ E AT+++TNPTHYA+ALRY P++VAKG + A +R +A
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
H+IP+ P LAR+L K +P++ IP ++AV+ ++ +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340
>gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040]
gi|99039075|gb|ABF65687.1| Flagellar biosynthetic protein flhB [Ruegeria sp. TM1040]
Length = 363
Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats.
Identities = 85/355 (23%), Positives = 160/355 (45%), Gaps = 2/355 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ + +K+ P+ +K+ A EG+ P S + +S L LI I + +
Sbjct: 1 MSDENDDSDKSFEPTPEKLRKARQEGDVPKSNDLLQAASYLGLLIAFYTAGRSSIEQLGT 60
Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L ++ + + A VI + I + Q+ V
Sbjct: 61 VLMSMIDQPDRLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVILAVFAQKAMVF 120
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++P R+S+ + K + + L F KSF K++L + + L+ M+ +
Sbjct: 121 APKRIQPKLSRLSIIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLPEMIASVG 180
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+P +++ + LI+ L+ + ++D + ++ K MS++++ DE+K S G
Sbjct: 181 TSPFTVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEG 240
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P K ++K R + ++ A A ++I NPTHYA+AL++ + AP VAKG +
Sbjct: 241 DPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDG 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +R+IA E+ +P+ +P AR+L+ V + I Y VA I +
Sbjct: 301 VAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAIRFAEEMR 355
>gi|260767693|ref|ZP_05876628.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
gi|260617202|gb|EEX42386.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
gi|315179475|gb|ADT86389.1| flagellar biosynthesis protein FlhB [Vibrio furnissii NCTC 11218]
Length = 339
Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats.
Identities = 77/315 (24%), Positives = 162/315 (51%), Gaps = 1/315 (0%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
++ + L++F + + + L + ++ ++ D++ + +++ ++ ++
Sbjct: 1 MLVVGALSLMWFGDALARGLYAAMGRLF-NLSREEIFDVNKLFDIVSGAMVNLILPLLLI 59
Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
L+ + + + P F +++ G+KR++ + + V +KS +K++LV
Sbjct: 60 LITLFVAALIGAAGVGGINFSAEAAMPKFSKMNPLSGLKRMFGLQSWVELLKSILKVLLV 119
Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
+ + + + ++HA + +++I + + +D+ + Q
Sbjct: 120 AGVAFYLIEASKQDLFQLSLDTFPQNIFHALDILLNFVLLISCSLLVVVAIDVPFQIWQH 179
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
++LKM+KQE+KDE K + G P +K R + + R + +MM +A +IITNP H+++A
Sbjct: 180 ANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVA 239
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
LRY Q + APV+VAKG + +A K+R++A EH+I I P LAR+L+ + IP
Sbjct: 240 LRYKQNTDRAPVVVAKGIDHLALKIREVAREHDIMIIPAPPLARALYHTTELEQEIPDGL 299
Query: 339 YKAVAQLIYKIYHKK 353
+ AVAQ++ ++ K
Sbjct: 300 FVAVAQVLAYVFQLK 314
>gi|89111155|dbj|BAE80245.1| HrcU [Acidovorax avenae subsp. avenae]
Length = 352
Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G S++ + + A L+ L V + L
Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ LL+ ++L + +++ ++ + + L Q ++ + P F
Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFSKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + K+ L + LD G + + +MSK ++K E K S G+P +K KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFVRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ E AT+++TNPTHYA+ALRY P++VAKG + A +R +A
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
H+IP+ P LAR+L K +P++ IP ++AV+ ++ +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340
>gi|34498065|ref|NP_902280.1| secretion system apparatus protein SsaU [Chromobacterium violaceum
ATCC 12472]
gi|34103920|gb|AAQ60280.1| type III secretion system EscU protein [Chromobacterium violaceum
ATCC 12472]
Length = 351
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 86/339 (25%), Positives = 161/339 (47%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI DA N+G S E + + L Y F + ++ L+V ++
Sbjct: 3 EKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAISV 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q + I+ + L A R + L ++ I + + Q P+L +KPS +
Sbjct: 63 VNQDLVFGINQLTGAFLEL---AMRFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K+++S+ +L FMKS K+ ++ I L + ++ ++ + + +
Sbjct: 120 KLNPVSNLKQMFSMRSLFEFMKSIFKVTILSLIFFYLLRQYSPSIQFLPLSDVATGMRVS 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + ++ F + D + + +L MS ++IK E K S GNP IK ++K
Sbjct: 180 TQLLFWMWASLIGFYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQKRKE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
R + + S++T ++ NPTH A+ LRY E P + A G++ +A + K+A
Sbjct: 240 AHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIVKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ IP+ E +AR+L + I I ++ VAQ++
Sbjct: 300 KAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQILR 338
>gi|21230687|ref|NP_636604.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769318|ref|YP_244080.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
campestris str. 8004]
gi|21112276|gb|AAM40528.1| HrcU protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574650|gb|AAY50060.1| HrcU protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 357
Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + +
Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T + D + + L + + L +P + + G+ +Q +L V P
Sbjct: 62 DFTTNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K ++G ++ L T++ P I
Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + +L + D + + +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L +V + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341
>gi|283782110|ref|YP_003372865.1| type III secretion exporter [Pirellula staleyi DSM 6068]
gi|283440563|gb|ADB19005.1| type III secretion exporter [Pirellula staleyi DSM 6068]
Length = 363
Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 182/350 (52%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D K+ + + + A EG S++ + + L + LL++FS G++ +
Sbjct: 2 DDDNGEKSHEATQHRRDKAREEGQVVKSQDLTSAAM-LMACLLLLWYFSSGMFELVGAFT 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ + ++ + + +R ++P LL+ M+ I L Q + N +
Sbjct: 61 RDQITGQLWQPITLADVTSDFARIGGLLARTLLPLLLMMMLAAITIQLSQTGFLFLPNKL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+R++ KRI++++NLV+ +K++L+G + +SL + T+L+ +
Sbjct: 121 AMDLERINPLNNSKRIFAVSNLVSLGFGLLKVLLIGVVAGLSLWQQRATILELTDQSAAV 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
I T I I + L +LD G+ + + L+M+ Q++++E+K+ G+P
Sbjct: 181 IGKFVLETALWTSIKIAAALLVLAILDYGYQWWKHEQDLRMTTQQVREEMKEQTGDPQTM 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R+K I R + +++ + +A +I+TNPT A+AL+Y AP+++AKG ++A+++
Sbjct: 241 QRRKQIQRQLVMNRLSTSIPKADVIVTNPTELAIALQYDPNTMPAPIVIAKGAGVLAQRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A E+N+P+ E LAR+L++ V +N +P Y AVA+++ +Y K
Sbjct: 301 RRLALENNVPVVERKELARALYQLVEVNQPVPSEQYAAVAEVVRYVYQLK 350
>gi|312884592|ref|ZP_07744296.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367904|gb|EFP95452.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 346
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 161/350 (46%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K+I+DA +G S E + Y L + ++
Sbjct: 1 MAE------KTEKPTQKRIKDARKKGQVVKSVEIVTGFQMAIICGYFLVEGQGLMEAIWK 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + S S +V ++ L + L+L + F S L+Q P+L
Sbjct: 55 MIDIAIHSINLPLKVAASSVVGAFVYIMLRFISGLAALLVLTVAF---SCLVQTGPLLAT 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPSF ++++ K I+S+ ++ K+ +K++++ + L ++ +
Sbjct: 112 ESLKPSFNKINVINNAKNIFSMKSIFELCKNMLKVLVLSLVFYYLLHQHVNMFQYLPTCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ + L+ D + + Q +LKMSK++ K E K++ GNP
Sbjct: 172 AECGVEVISTLLKWLWTAFLICYVIFAAADYAFVHFQTMKQLKMSKEDTKQEYKETEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ + R + ++T+++ NPTH A+ L Y E P+++ K Q +A
Sbjct: 232 EVKQKRRELQRETANGSLATNVKKSTVVVRNPTHIAVCLYYNPDEAPVPIVLDKAQEHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++A +H+IP+ E LAR+L+ QV IP ++ VA+L+ +
Sbjct: 292 LHTVELAEKHSIPLIENIPLARALYHQVEPGQLIPESLFEPVAELLRVVM 341
>gi|296534146|ref|ZP_06896642.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
49957]
gi|296265522|gb|EFH11651.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
49957]
Length = 353
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 95/357 (26%), Positives = 182/357 (50%), Gaps = 11/357 (3%)
Query: 1 MSEND----APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY 56
M+E + + K PS K+ A G P++REA +S+ L +F +
Sbjct: 1 MAEKEGPGGDSEEKELDPSEAKLRKARESGEVPLAREAVQLASLCGGAFALSWFGPALGH 60
Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
+ L A + + + + L+ +++ A+ L + L + L Q
Sbjct: 61 HMVEQGRSLFALSHEARWQ------LELSEMAVRAAPLALGVAGLAATGAVVVTLAQTRL 114
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
+++ + P+ ++S G+KR++ LV F ++ +K++ G + +
Sbjct: 115 LVSAKPLAPNPMKLSPLRGLKRMFGPQALVEFGRAMLKVVACGLAMWWVSDGITERLPQT 174
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
++ + A + ++L LL + ++D+GW + K++MS+QE+KDE+K+S
Sbjct: 175 LALPLEELGGLAAELIERLLRGALLAFTVVALVDLGWVRLRHMQKMRMSRQEMKDEMKES 234
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P I+ R++ IA R R + M +AT+I+TNPTHYA+AL Y + + AP +VA+G
Sbjct: 235 EGDPHIRGRRRQIALRRSRSRAMAEVPKATVIVTNPTHYAVALSYRRGIDAAPRVVARGV 294
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ +A ++R+ A +H +P+ P LAR+L++ V + IP ++AVA+LI ++ +
Sbjct: 295 DSMAARIRREAEKHGVPVLPNPPLARALYR-VEEGAQIPAEHFEAVAELIALVWKLR 350
>gi|304408584|ref|ZP_07390205.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
OS183]
gi|307305412|ref|ZP_07585160.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
BA175]
gi|304352405|gb|EFM16802.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
OS183]
gi|306911715|gb|EFN42140.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
BA175]
Length = 349
Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K++ +A N G S E + L Y L+ + ++ +
Sbjct: 1 MAE------KTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + IV + A R + L+ + + L+Q PV
Sbjct: 55 LIDLTINAINLPLETAAEQIVGTFA---MLALRFLGGLTLVLVFTIVVGNLVQTGPVWAT 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ PS ++++ K++ S+ +L K+ VK+ ++ + L
Sbjct: 112 ESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L + D + + +LKMSK + K E K S GNP
Sbjct: 172 EACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A
Sbjct: 232 EMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+ +A + +PI E LAR+LFK V IP ++ VA+L+ +
Sbjct: 292 LHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVM 341
>gi|332297777|ref|YP_004439699.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
12168]
gi|332180880|gb|AEE16568.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
12168]
Length = 378
Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 169/352 (48%), Gaps = 8/352 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE PS K+ A EG P S+E S +L ++ L+ L
Sbjct: 29 EDEGRTEQPSETKLRKAREEGRIPKSQELSGALVLLFPVLALIMLAPWLFTGFIKILRFY 88
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
+L D + + R+V+P L ++ GI + +IQ + ++
Sbjct: 89 FDRCVSVELNDPALAAEFFSA----VIRMVLPVSLTALVAGIAANVIQNRGFLFTTKPIE 144
Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P F ++ G K ++S N +KS +K+ ++ I + + +L + +
Sbjct: 145 PKFSKILPHFGEYFKKTLFSFEGAFNIVKSLLKVTVIFAAAYILVKNDLPKLLSLMDVSL 204
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ + + K+L++ + + + D Q+ +KMSKQE+K+E K+ G+P+
Sbjct: 205 WTGVAYIAGMTAKLLVIAAVIFIVIAIPDYLVQRRQFMESMKMSKQEVKEEFKEMEGDPL 264
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K+R + + M +++ ++ITNPTHYA+A+ Y + P++ AKG + +A+
Sbjct: 265 VKSRIRQYMHQMLSQNMPANVAKSDVVITNPTHYAVAIEYDSSVMQGPMVTAKGVDSLAR 324
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA E+ +PI E LAR+L+ + I +P +Y+A+A ++ +Y+ K
Sbjct: 325 RIKDIARENAVPIVENRPLARALYAEAEIGEIVPENYYQALAVILANVYNMK 376
>gi|260222456|emb|CBA32037.1| hypothetical protein Csp_D30120 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 384
Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats.
Identities = 83/350 (23%), Positives = 161/350 (46%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ S +K++ A ++G S++ S + + A + +L + +
Sbjct: 2 EQGSQDRNLPASERKLKKARDDGQVSRSQDLSHLAVLGAGAVAVLSLSPILFEQLKLSMV 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + +V L S + + + M I + + V +L +
Sbjct: 62 QQL-SFDAETVRRTGTMVQRLGDASTIGTAGCVAFAAIVMTAAILAAVASGGWVSSLKPL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P F R++ G ++S L++ K + ++ I + L M + +
Sbjct: 121 MPDFSRLNPLSGFANLFSKKKLLDTAKMALMTAILFVIAGLFLKSGMQEMAAMLLQPSPA 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ H + L ++LL I ++D+ ++KMS QE+K+E K+S GNP +K
Sbjct: 181 AISHLTQWMTGGLGLMLLVILLAAMVDVPLQLFLHKDQMKMSHQEVKEEGKESDGNPQLK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ + R + + A +A ++ NPTH+A+A+RY + AP +V+KG +L+A K+
Sbjct: 241 GKIRQKQREMAQKSSVGAVPKADFVVMNPTHFAVAIRYDEASMRAPRVVSKGADLLAMKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R +A +H+IP+ + P LAR+L+ ++ IP Y AVAQ++ +Y +
Sbjct: 301 RDVAKQHSIPVLQSPMLARALYANAELDQDIPSTLYTAVAQVLAYVYRLR 350
>gi|126442503|ref|YP_001061219.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
gi|254182916|ref|ZP_04889509.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1655]
gi|126221994|gb|ABN85499.1| flagellar biosynthesis pathway, component FlhB [Burkholderia
pseudomallei 668]
gi|184213450|gb|EDU10493.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
1655]
Length = 379
Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 158/353 (44%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ N +K+E + +K+ +A +G SR+ S +L L L+ + +
Sbjct: 1 MA-NQDSGDKSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T +++ + +S++ +I + + + L+ +L+
Sbjct: 60 LFLLELVDVTGDGA--LANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F R++ + R+ S + F S +K + + ++ L
Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + + D+ + + +M+KQE+KDE K + G P
Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350
>gi|269976286|ref|ZP_06183282.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
gi|306817706|ref|ZP_07451448.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
35239]
gi|269935615|gb|EEZ92153.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
gi|304649520|gb|EFM46803.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
35239]
Length = 373
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 174/350 (49%), Gaps = 5/350 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
KTE + ++ +G S++ + + S+ A L ++ +
Sbjct: 2 SDSGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGREQIAA 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHV 123
+ + + I+ L ++P +L M+ + +IQ V + H+
Sbjct: 62 VRELVNGVSMTE---ILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPSAKHL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP + ++L +G+K+I + L N +K+ +K + VG ++ + ++ M +
Sbjct: 119 KPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHMSGRD 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++ + + ++ ++ +++LD + + + + KMSKQE+K+E KQ G+P IK
Sbjct: 179 LVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++++S A R++MM + A +++ NPTHYA+AL+Y + AP +VAKG + +A ++
Sbjct: 239 SQRRSRALQMSRNRMMNDAAGADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHLASRI 297
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA ++ +P+ E+ +LAR+L+ I IP Y AVAQ++ K
Sbjct: 298 REIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347
>gi|238762378|ref|ZP_04623349.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
gi|238699363|gb|EEP92109.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
Length = 377
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 169/350 (48%), Gaps = 3/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ K+E P+S K+ A +G+ P S++ ++ + ++ L+ L F +
Sbjct: 2 SSNSGEKSEKPTSGKLLKARKKGDIPRSKDVTMAAGLVTSLVTLTLFLPYYKELIGESFL 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ +A + D + L +LS + L + I + L+ +
Sbjct: 62 AVGRTAGRI---DDPAALEQLLLTNLSIFFKFLLTLTPIPLVSILATLVPSGWNFTPVKL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P FK++S GIK+I+S +N +K K +V + + + + +L +
Sbjct: 119 IPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVNSSLVDLLRLQALPLQE 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ F +L+ + I +DI S + + K+KM+KQE+K E K + GNP IK
Sbjct: 179 AITEGFILYHGILVYFIAIIVIFAAIDIPLSKYLFTKKMKMTKQEVKLEHKSNDGNPEIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
NR + + R ++ + A +IITNPTH+++AL+Y + AP ++AKG++ IA +
Sbjct: 239 NRVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYI 298
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R IA ++I I E P LAR+++ +N +P Y+A+AQ++ + K
Sbjct: 299 RTIAKNNDIEIVEFPPLARAIYHTTKVNQQVPIQLYRAIAQVLTYVMQVK 348
>gi|331657929|ref|ZP_08358891.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
gi|331056177|gb|EGI28186.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
Length = 345
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 88/314 (28%), Positives = 167/314 (53%), Gaps = 1/314 (0%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L + + F ++ L L + D + I+ + L A ++P +
Sbjct: 1 MLVGVSVIWFGGVSLARRLSGMLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLI 59
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
++ I S ++ V + ++P F +++ GIKR++S +K+ +K ILVG
Sbjct: 60 SGVVLVAIISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVG 119
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
++ L ++ M+ ++ +P + + +A V ++++L + + D+ +
Sbjct: 120 SVTGFFLWHHWPQMMRLMAESPLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHL 179
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
KL+MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL
Sbjct: 180 KKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVAL 239
Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
+Y + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y
Sbjct: 240 QYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLY 299
Query: 340 KAVAQLIYKIYHKK 353
AVA+++ ++ K
Sbjct: 300 AAVAEVLAWVWQLK 313
>gi|227876759|ref|ZP_03994868.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
35243]
gi|307701577|ref|ZP_07638594.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
FB024-16]
gi|227842656|gb|EEJ52856.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
35243]
gi|307613256|gb|EFN92508.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
FB024-16]
Length = 373
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 174/350 (49%), Gaps = 5/350 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
KTE + ++ +G S++ + + S+ A L ++ +
Sbjct: 2 SDSGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGREQIAA 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHV 123
+ + + I+ L ++P +L M+ + +IQ V + H+
Sbjct: 62 VRELVNGVSMTE---ILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPSAKHL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP + ++L +G+K+I + L N +K+ +K + VG ++ + ++ M +
Sbjct: 119 KPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHMSGRD 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++ + + ++ ++ +++LD + + + + KMSKQE+K+E KQ G+P IK
Sbjct: 179 LVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++++S A R++MM + A +++ NPTHYA+AL+Y + AP +VAKG + +A ++
Sbjct: 239 SQRRSRALQMSRNRMMNDAAEADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHLASRI 297
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA ++ +P+ E+ +LAR+L+ I IP Y AVAQ++ K
Sbjct: 298 REIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347
>gi|160875393|ref|YP_001554709.1| secretion system apparatus protein SsaU [Shewanella baltica OS195]
gi|160860915|gb|ABX49449.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
OS195]
gi|315267593|gb|ADT94446.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
OS678]
Length = 349
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K++ +A N G S E + L Y L+ + ++ +
Sbjct: 1 MAE------KTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L A LE + ++ ++ A R + L+ + + L+Q PV
Sbjct: 55 -LIDLTIHAINLPLETAAE--QIVGTFAVLALRFLGGLTLVLVFTIVVGNLVQTGPVWAA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ PS ++++ K++ S+ +L K+ VK+ ++ + L
Sbjct: 112 ESIMPSMDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L + D + + +LKMSK + K E K S GNP
Sbjct: 172 EACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A
Sbjct: 232 EMKQKRRETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+ +A + +PI E LAR+LFK V IP ++ VA+L+ +
Sbjct: 292 LHIVALAEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLVM 341
>gi|325921925|ref|ZP_08183736.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
gi|325547627|gb|EGD18670.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
Length = 357
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 164/343 (47%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + +
Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T + D + + L + + A L +P + + G+ +Q +L V P
Sbjct: 62 DFTTNTR--DATALQRALGRIGIQAVLLTLPFVAACLAAGLIGTFLQTGLNASLKPVTPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G K+I+S+ N ++ MK +K ++G ++ L T++ + I
Sbjct: 120 FDSLNPVNGFKKIFSLKNFIDLMKLGIKAAVIGVVLWYGLRALMPTIIGLVYEPTPYIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + +L + D + + +MSK E K E K+S G+P +K ++
Sbjct: 180 ICWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPELKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LAR+L +V + A+P ++ VA ++ +
Sbjct: 300 AQNQGIPIVANPPLARALH-EVDLGDAVPESLFETVAVVLRWV 341
>gi|304414279|ref|ZP_07395647.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
gi|304283493|gb|EFL91889.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
Length = 353
Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 82/349 (23%), Positives = 155/349 (44%), Gaps = 9/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E K E P+ KKI+DA +G S E + + ++ LIY + I +
Sbjct: 1 MAE------KNEKPTPKKIKDAREKGQVIKSVEITSGAQLVVVLIYFTLTGNDLIDQAAA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + +Q I T L + + ++ L++ + S Q P+
Sbjct: 55 LIRSSIEQLSQPMNIAALRIGAEATALLMHITGILGGALIIITLLMGIS---QIGPLWAP 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +R++ ++ + S +L KS +KI+ + I L+ T
Sbjct: 112 KALSIKGERINPINNLRNLISFRSLFELGKSLIKIVSLSLIFGYLLSRYAPTFGYLSYCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + +L ++ +LD + H +LKMS +EIK E K S G+P
Sbjct: 172 SVCAMPVFGTLMSWLLGSLIACYLLFALLDYSFQRHSVMKQLKMSPEEIKREYKDSEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +++ + + + +R+T ++ NPTH+A+ L Y E P+++ KG + +A
Sbjct: 232 HIKQKRRELQQQIQSGSLSTNVNRSTAVVRNPTHFAVCLFYHPEEAPLPIVLEKGHHEMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
K + K+A +P+ E +LAR+L++ V + IP ++ VA L+ +
Sbjct: 292 KTIIKMAERAGVPVIENVALARALYRDVDCGNTIPEKLFEPVATLLRMV 340
>gi|182412230|ref|YP_001817296.1| type III secretion exporter [Opitutus terrae PB90-1]
gi|177839444|gb|ACB73696.1| type III secretion exporter [Opitutus terrae PB90-1]
Length = 367
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 170/351 (48%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D KTE PS KK+ +A++ G S E ++ ++A L L F V +
Sbjct: 1 MAEHDQDQ-KTEQPSEKKLSEAMDRGQFARSPELAVLFLLVAVLAALSFSVREASREVAT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + K+E + I L++ + P LL ++ + + +Q L
Sbjct: 60 YAASLFSRFGSMKVEHDT-IRAYFGEAMLTSGTALAPLLLACVVAALLAGGVQSGFRLTP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+R++ EG KR+++ + LV +K++ +G + + L
Sbjct: 119 EAFGFKPERLNPVEGFKRVFNKSALVRAGVDLLKLVALGAALYLGARGLMMDPLFSAPVE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++L + +T + + + + L M++QE+KDE K G+
Sbjct: 179 AAYLGQFLTDATYVFLSRLILALGVITAISYSYEKFKTHRDLMMTRQELKDEHKNQEGSS 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
K + +AR + +MM A A +++TNPTH+A+AL+Y + ++ APV++AKG+N A
Sbjct: 239 QAKMAMRRMARRLTQRQMMSAVPTADVVVTNPTHFAVALKYERGKDAAPVVLAKGENRFA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++++ IA EH +P+ E +AR LF + AIPP Y+AVA ++ +Y
Sbjct: 299 QRIKAIAAEHGVPMVENKPVARLLFSMGKVGEAIPPELYQAVASILAVVYR 349
>gi|218663130|ref|ZP_03519060.1| flagellar biosynthesis protein FlhB [Rhizobium etli IE4771]
Length = 360
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 135/351 (38%), Positives = 214/351 (60%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++
Sbjct: 1 MAD-DDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGRMSE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-GIGSYLIQRIPVLN 119
L + Q K+E ++ L L + + L+ P +L M+F L +
Sbjct: 60 TLRDIFEQPDQWKIETGPDVLALFVRLGWAIAALLAPAFILLMVFGHRIVDLPEPADACA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
N + + + K+++VG I+ L YF +D + +
Sbjct: 120 GNASDRRLRASRRPRAGHGSSACLASSSSESPLFKVVVVGVILFFVLRSEYFGSIDAMFS 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+P +IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+
Sbjct: 180 DPQTILVRMMTAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LI
Sbjct: 240 PFVKGRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
A K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 300 ALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 350
>gi|167905062|ref|ZP_02492267.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
13177]
Length = 379
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 77/350 (22%), Positives = 156/350 (44%), Gaps = 2/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
N +K+E + +K+ +A +G SR+ S +L L L+ + +
Sbjct: 3 NQDSGDKSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRALFL 62
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ L T +++ + +S++ +I + + + L+ +L+ +
Sbjct: 63 LELVDVTGDGA--LANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSGAQL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP F R++ + R+ S + F S +K + + ++ L
Sbjct: 121 KPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLPLQE 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L F + + + + D+ + + +M+KQE+KDE K + G P ++
Sbjct: 181 ALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRPEVR 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A +
Sbjct: 241 SRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMALAI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 301 RRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350
>gi|134280655|ref|ZP_01767365.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
gi|167725903|ref|ZP_02409139.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
DM98]
gi|254299711|ref|ZP_04967160.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
406e]
gi|134247677|gb|EBA47761.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
gi|157809492|gb|EDO86662.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
406e]
Length = 379
Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 158/353 (44%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ N +K+E + +K+ +A +G SR+ S +L L L+ + +
Sbjct: 1 MA-NQDSGDKSEKATPQKLRNARRQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L T +++ + +S++ +I + + + L+ +L+
Sbjct: 60 LFLLELVDVTGDGA--LANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F R++ + R+ S + F S +K + + ++ L
Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + + D+ + + +M+KQE+KDE K + G P
Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350
>gi|126174201|ref|YP_001050350.1| secretion system apparatus protein SsaU [Shewanella baltica OS155]
gi|125997406|gb|ABN61481.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
OS155]
Length = 349
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K++ +A N G S E + L Y L+ + ++ +
Sbjct: 1 MAE------KTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + + IV + A R + L+ + + +Q PV
Sbjct: 55 LIDLTINAINLPLETAAEQIVGTFA---MLALRFLGGLTLVLVFTIVVGNSVQTGPVWAT 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ PS ++++ K++ S+ +L K+ VK+ ++ + L
Sbjct: 112 ESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCE 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L + D + + +LKMSK + K E K S GNP
Sbjct: 172 EACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A
Sbjct: 232 EMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+ +A + +PI E LAR+LFK V IP ++ VA+L+ +
Sbjct: 292 LHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVM 341
>gi|254461227|ref|ZP_05074643.1| flagellar protein FlhB [Rhodobacterales bacterium HTCC2083]
gi|206677816|gb|EDZ42303.1| flagellar protein FlhB [Rhodobacteraceae bacterium HTCC2083]
Length = 383
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 84/360 (23%), Positives = 172/360 (47%), Gaps = 12/360 (3%)
Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E KTE P+ K+++ A +G P S+E +F+++ ++ + P + S+
Sbjct: 1 MAEGGSDGQEKTEEPTQKRLDKAKEDGQVPSSKELFVFTTLFIGML-IYVGLVPVLPSLV 59
Query: 60 SDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+ +L + + ++ L D ++ + + +P L++ + + +
Sbjct: 60 QEWGMLFSFSGEKGLTDAIFGNLGASFRFMFWKSVVFALPMLVVVIATQ---AAMSGLIN 116
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
+ + R++ G+KR+ S+ LV +K+ K+ L+ + + ++L
Sbjct: 117 WSNGALAFKASRINPLSGLKRMVSMKALVEMLKAIGKVTLLISASVMVFVSQIESLLVSN 176
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ + L ++I+ L + + + D+ + ++Q +LKM+ QE++DE KQ+
Sbjct: 177 ATHLTGGLSRMNDVFVLLIIVFLFVLGIMAMADVMYQHYQHNKQLKMTLQEVRDESKQTE 236
Query: 238 GNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
G+P +K + + + R++ R M+A AT IITNPTH+A+AL+Y AP ++
Sbjct: 237 GSPEVKAKIRRMQMTAGSRAKARKAAMDAVPTATAIITNPTHFAVALKYEVGTVGAPTIL 296
Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A G+ A+++ + + IF LAR+LF + IP + AVA ++ IY
Sbjct: 297 AMGRGHFAQEIISTGRDAGVTIFRNELLARALFFAGQVGEEIPAPLFSAVAGVLAFIYRL 356
>gi|256376454|ref|YP_003100114.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
gi|255920757|gb|ACU36268.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
Length = 363
Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 171/343 (49%), Gaps = 4/343 (1%)
Query: 11 TEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT 70
TE P++KK+ DA EG + + + IL L + + L +A
Sbjct: 9 TEEPTAKKVRDAKREGRMARTPDLGTWLGILGATWTLPMTLTSLLDIGQGLLKK---AAG 65
Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
+ + V ++ L + V+P L ++ + + +Q ++ KP F ++
Sbjct: 66 FMAAPEPALAVAIVKDGVLDGALAVLPLSLTIIVATLVAAGLQGTLRMSTKQFKPKFTQL 125
Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
+ +GIK ++ ++L +K+ +K L+ ++ +S++ +++ + + ++ A
Sbjct: 126 NPLKGIKNMFGPHSLWEALKTLIKTSLLAGLLYVSVSGLVPSVVASGTLSLAALTDVATG 185
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
T +L + + + V+D + + + +LKM+KQE+KDE KQS G+P +K +S
Sbjct: 186 TAMSLLRLAAIGGLVMAVVDYAVAKRRIHKELKMTKQEVKDEHKQSEGDPQLKGAIRSKQ 245
Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
R++MM A +++ NPTH A+ALRY AP +VAKG IA K+R++A EH
Sbjct: 246 MQMSRNRMMAEVPNADVVLVNPTHIAVALRYDPAR-GAPRVVAKGAGAIATKIRELATEH 304
Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+PI ++ LAR+L K + IP + VAQ++ ++ K
Sbjct: 305 RVPIVQDVPLARALHKACEVGHEIPFEMFGPVAQVLAFLHRLK 347
>gi|167568047|ref|ZP_02360963.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
EO147]
Length = 377
Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats.
Identities = 77/345 (22%), Positives = 158/345 (45%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK+ DA +G S E + + L Y LF + + + + + V +A
Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L + R + +L + + + + Q P+L + +KPS
Sbjct: 63 VNDDFAAATARWTSALGAV---LIRFTLGMAVLVIAMTVVAAIAQIGPLLAVEALKPSLD 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K+++S+ +L F KS K+ ++ I + + ++ + L +
Sbjct: 120 KINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAVS 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + ++ F + D + + +L MS ++IK E K S GNP IK++++
Sbjct: 180 TQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R + +++T+++ NPTH A+ L Y + E P ++ G++ +A + +A
Sbjct: 240 IHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+P+ E LAR+L ++ + IPP ++ VA L+ +
Sbjct: 300 RERVPVVENVPLARALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344
>gi|332159965|ref|YP_004296542.1| type III secretion protein, YscU/HrpY family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318607483|emb|CBY28981.1| type III secretion inner membrane protein
(YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
export components) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664195|gb|ADZ40839.1| Type III secretion protein, YscU/HrpY family [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862410|emb|CBX72569.1| secretion system apparatus protein ssaU [Yersinia enterocolitica
W22703]
Length = 358
Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 150/342 (43%), Gaps = 5/342 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + K E P++K++ +A +G S E + ++ + Y + I + +
Sbjct: 1 MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYFFLVGNTIIDQIGA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + Q ++ I + + +V ++ I + + Q P+
Sbjct: 59 LIRSTINQLQQPFTFALARIG---SECTAVLIHIVGILGGALILMTIIAGIAQVGPLFAT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V + ++ + K+++S+ +L +KS +K+ ++ I L + +
Sbjct: 116 KAVAFKSEHINPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYLAYCG 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + +L ++ ++LD + ++ +LKMS +E+K E K S G+P
Sbjct: 176 SSCAIPVFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +++ + + + R+T I+ NPTH+A+ L Y + P+++ KG+ A
Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ K+A + IPI E +LAR+L + V IP ++ V
Sbjct: 296 ALIIKLAEQQGIPIVENIALARALHRDVVCGDTIPETLFEPV 337
>gi|42525573|ref|NP_970671.1| flagellar biosynthesis protein FlhB [Treponema denticola ATCC
35405]
gi|13122809|gb|AAK12645.1|AF232219_4 FlhB [Treponema denticola]
gi|41815584|gb|AAS10552.1| flagellar biosynthetic protein FlhB [Treponema denticola ATCC
35405]
Length = 390
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 90/352 (25%), Positives = 173/352 (49%), Gaps = 8/352 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ KI A EG S++ + +L +I L+ S+ +
Sbjct: 33 EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
T + + + L + V P + ++ G+ +IQ + + ++
Sbjct: 93 FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148
Query: 125 PSFKRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P FKRV + KR +S L N KS K++++G I + + N M+ + ++
Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ + T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P+
Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+
Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGIMPAPMVISKGVDATAQ 328
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+NIP E LAR+L+ V + IP +Y++++ + KIY K
Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYQSLSIIFLKIYSMK 380
>gi|312602783|ref|YP_004022628.1| type III secretion inner membrane protein SctU [Burkholderia
rhizoxinica HKI 454]
gi|306431586|emb|CBK52138.1| type III secretion inner membrane protein SctU [Burkholderia
rhizoxinica HKI 454]
gi|312170097|emb|CBW77109.1| type III secretion inner membrane protein SctU [Burkholderia
rhizoxinica HKI 454]
Length = 360
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 159/347 (45%), Gaps = 4/347 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ K++ DA +G S + + + + A + L+ S + + +H L
Sbjct: 2 SDEKTEEPTEKRLRDARRDGQVAKSTDLTDAAVMCASIAVLVAAASMFTDAFRALIHTTL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T + + +V L + +++P + + + Q ++ V P+
Sbjct: 62 DFVTTNRSNTM--LVASAFKLGRQSLTIIVPCVAATALCAFAALFAQVGFQISTKPVTPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
V+ GIKRI+S+ +V+ KS +K LV ++ ++ + + +
Sbjct: 120 PTAVNPASGIKRIFSLRTVVDMTKSLLKAALVACVMWYTIRGLIPLIATSLYQPLPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K+ L + LD + +++MSK EIK E KQ G+P +K +
Sbjct: 180 LFWTVLLKLFSAAALVFIVIAALDFKLQKFLFTRQMRMSKDEIKREYKQQEGDPQLKGER 239
Query: 247 KSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K IAR + A +I NPTHYA+A+RY E PV++AKG + A ++R+
Sbjct: 240 KRIAREWAQEAPPRLRVGLANALIVNPTHYAVAIRYAPEECPLPVVIAKGHDESAAELRR 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + +PI P +AR+L + V I+ IP ++AVA ++ +
Sbjct: 300 YAAQARVPIIGNPPIARALHR-VKIDEPIPEALFEAVAAILRWVDSL 345
>gi|284007636|emb|CBA73289.1| type III secretion inner membrane protein YscU,SpaS,EscU,HrcU,SsaU
[Arsenophonus nasoniae]
Length = 352
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 160/345 (46%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ K++ +A +G S E + L YL+ ++ + + + S
Sbjct: 6 EKTEKPTQKRMNEARKKGQVIKSNEIVTVLKMAVILGYLIVEGHALFNAIGELIILTVRS 65
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L ++ + R ++ +++ ++ S ++Q P+ + SF
Sbjct: 66 LS---LPIDVAAKTIIGSFIMLLLRFMVGLVVVLIVTICLSCIVQTGPIWAHKSLAFSFN 122
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++++ + K+I+S+ NL F K+ +K+I++ + L + +
Sbjct: 123 KMNIIKNAKQIFSMKNLFEFGKNILKVIVLTLVFYYLLDYYVNLFQYLPTCGIDCGVMVT 182
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F ++ + L+ + D G+ Y+ +LKMSK++ K E K + GNP IK +++
Sbjct: 183 FTLIQWLWGGFLVCYIVFAIADYGFQYYHVMKELKMSKEDTKREFKDTEGNPQIKQKRRE 242
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R + ++ ++T+II NPTH + L Y P +V K Q+ +A + K+A
Sbjct: 243 IQREITSNSVVANVRKSTVIIRNPTHIVVCLYYQPGITPLPQVVEKFQDNMALHIVKLAE 302
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ IP+ E LAR+LF+QV IP ++ VA+L+ + +
Sbjct: 303 KAGIPMVENILLARALFQQVETGQMIPESLFEPVAELLRLVMDLR 347
>gi|85710192|ref|ZP_01041257.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
gi|85688902|gb|EAQ28906.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
Length = 378
Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE K P+ K+ DA +G+ S+E + + + A +L + S+
Sbjct: 1 MSEETNG-EKRFDPTPKRRSDAAKKGDVLRSKEVATAAVMAAGTFMILIIGPWLLDSMER 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L D + +++ ++ + L+ + +GS ++
Sbjct: 60 VARAAFG-FDPAGLGDFA-PGAMISQIAQEILPPIFAIGLVVIAVTVGSQMVLGEGRWVP 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++KP R++ G+KRI+ + L+ KS +K++L+G+I ++ + ML
Sbjct: 118 QNLKPKPSRINPLSGLKRIFGMQGLIELGKSILKLLLLGSIAAWWVSGSLDGMLGLGRGT 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A+ + ++ M+++ + + V+D Q +LKMS Q++KDE KQS G+P
Sbjct: 178 LDAQLNFAWDAMTTLVAMLVVGLLVIAVIDYPLQRLQRDKRLKMSFQDLKDENKQSEGSP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++ R R + +A A I+ NP H+A+AL Y APV++AKG+ A
Sbjct: 238 EMKMARRQRQRDLSRGSIGKAMKEAQFIVVNPMHFAVALTYDPNLAPAPVVLAKGRGETA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
MR++A E +P+ P LAR+L+ + + Y A+A L+ + K
Sbjct: 298 MAMRELASEMELPVLHYPQLARALYFTTRADQMVREELYVAIAALVAFVMSLK 350
>gi|166154312|ref|YP_001654430.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
gi|166155187|ref|YP_001653442.1| type III secretion system protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335563|ref|ZP_07223807.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
gi|165930300|emb|CAP03786.1| type III secretion system inner membrane protein [Chlamydia
trachomatis 434/Bu]
gi|165931175|emb|CAP06740.1| type III secretion system inner membrane protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
Length = 360
Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+A Q D ++ L + + + +P L G+ + P + KP
Sbjct: 62 TAPQN--HDPHLAIYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + + +K+ + + + +KS KI I+ I L +++ P
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQV 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I LF + V+D+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGLFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L + IP Y+AV +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344
>gi|297516775|ref|ZP_06935161.1| flagellar biosynthesis protein FlhB [Escherichia coli OP50]
Length = 345
Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats.
Identities = 87/314 (27%), Positives = 168/314 (53%), Gaps = 1/314 (0%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L + + F ++ L L ++D + I+ + L A ++P +
Sbjct: 1 MLVGVSVIWFGGVSLARRLSGMLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLI 59
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG
Sbjct: 60 SGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVG 119
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
++ L ++ M+ ++ +P + + +A V ++++L + + D+ +
Sbjct: 120 SVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHL 179
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
KL+MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL
Sbjct: 180 KKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVAL 239
Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
+Y + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y
Sbjct: 240 QYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLY 299
Query: 340 KAVAQLIYKIYHKK 353
AVA+++ ++ K
Sbjct: 300 AAVAEVLAWVWQLK 313
>gi|118592629|ref|ZP_01550019.1| translocation protein in type III secretion [Stappia aggregata IAM
12614]
gi|118434680|gb|EAV41331.1| translocation protein in type III secretion [Stappia aggregata IAM
12614]
Length = 371
Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats.
Identities = 88/349 (25%), Positives = 169/349 (48%), Gaps = 4/349 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ KTE P+ KK+ DA +G S++ S+L + YL +
Sbjct: 1 MSQQPTG-EKTEQPTHKKLRDARKKGQVARSQDLVTTISLLGVIAYLWLAWDYNFAKFVE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L ++ A + L + + +V+P L + GI Q +
Sbjct: 60 MLDIVAALHGAGFR---ASAFNALQAMFDISIVVVLPLLGVGFALGIAGNYFQFGSIFAF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++KP + +S +G+K+I+S+ LV F+KS +KII + ++ + + ++ +
Sbjct: 117 ENLKPKIENISPAKGLKKIFSVKQLVEFLKSLIKIIFLSVLLFFVIRDAIGPYMNAVQCG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + L+ L A ++ D + Q +L M+K E++ E K++ G+P
Sbjct: 177 LQCLTAVTSSMLLTTLLFTALAFAIVSGFDFIFQKFQHKKELMMTKTEVQREYKETEGDP 236
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK R+K +A+ + ++ T AT +I NPTH+A+ + Y P++VAKG+NL A
Sbjct: 237 LIKGRRKQLAQEMVLSDGIDRTRNATAVIVNPTHFAVVIDYKPDIAPLPLIVAKGRNLHA 296
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+R A +H +P+F LARSL+ + + + +P +++ +A+++ +
Sbjct: 297 HDLRTEAEKHGVPVFRNVLLARSLYAESDVGAFVPDEWFEVIAKILVWV 345
>gi|323698077|ref|ZP_08109989.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. ND132]
gi|323458009|gb|EGB13874.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
ND132]
Length = 356
Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 175/351 (49%), Gaps = 3/351 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+KTE + K+ + EGN +E ++LA ++ L F T
Sbjct: 4 QEDPSKTERATQKRRDKQREEGNVAKGQEIPKVMTLLAGVLTLRFMIGFYSDQFTEIYRW 63
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
A ++ D L + LV+P +L+ + S +Q + ++
Sbjct: 64 TFLEAINFQV-DKPMAYALFAWGLKKMALLVVPFMLVLALVAFLSLRLQVGSLWTTKPLE 122
Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
P F ++ ++ GIK+ + S + L+ KS ++ + V I + + +L +N
Sbjct: 123 PKFGKLFNIMSGIKKLMLSPDALLKLGKSLLQAMAVAIAPYIVIRQELPNLLPLFHSNVQ 182
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
IL +++ L+ + + V D+ + + ++KM+K EIKDE KQ+ G+P I
Sbjct: 183 GILAFIVTVGYRMVCYALIPMLLIAVADLVYERWNYEEQIKMTKDEIKDERKQAEGDPKI 242
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K +Q+ + +M + +A ++ITNPTHYA+AL+Y + AP+++AKG N +A++
Sbjct: 243 KQKQRQKMMEVMASRMFQDIPKADVVITNPTHYAVALQYDPLKAPAPLVLAKGVNKVAER 302
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++++A E++IPI E LA++L+KQV I IP ++AVA ++ K+ K
Sbjct: 303 IKEVARENSIPIEENRPLAQALYKQVEIGETIPEELFQAVAAILAKLEKFK 353
>gi|119947198|ref|YP_944878.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
gi|119865802|gb|ABM05279.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
Length = 374
Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats.
Identities = 84/350 (24%), Positives = 174/350 (49%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D +KTE S++K++ + EG ++E + +L +Y F + + L
Sbjct: 2 SDNAQDKTEQASAQKLKKSKGEGQIARAKEFASACMLLGFCLYFYLSFERIAEAALN-LF 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + L+D ++ L + + P + + ++ + L+ V + +
Sbjct: 61 KLNFSFSVATLQDNDQMLIRLNKSLFTLIEIFFPFIFVVVLSTLIGSLVLGGWVFSFKTI 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+P ++S +GIKR++S+ LV +KS +K+ ++ ++ L+ N ML +
Sbjct: 121 QPKLDKLSFLKGIKRMWSLKTLVELIKSILKVAVIVYLLYSFLSNNLLYMLSLQRLPIEA 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + I+ + ++D+ + +++ ++KMSKQE+K+E KQ+ G P +K
Sbjct: 181 SSIAVLTKLATYSLYIIAILLLYGLIDLPYQLYEFNKQMKMSKQELKEEHKQAEGRPEVK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + I + + + + A +II NPTHYA+A++Y +AP LVAKG + A +
Sbjct: 241 QRIRQIQQQMSQRAITKTVPDADVIIMNPTHYAVAIKYDPKRAEAPFLVAKGNDQTALFI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++IA ++N+ + P+LAR+++ + IP + A+A ++ + +
Sbjct: 301 QRIALDNNVEVVISPALARAIYHTTQLEQMIPNQLFVAIAHVLSYVMQLR 350
>gi|76788804|ref|YP_327890.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
gi|237802523|ref|YP_002887717.1| type III secretion system protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804440|ref|YP_002888594.1| type III secretion system protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255310893|ref|ZP_05353463.1| type III secretion system protein [Chlamydia trachomatis 6276]
gi|255317193|ref|ZP_05358439.1| type III secretion system protein [Chlamydia trachomatis 6276s]
gi|255348453|ref|ZP_05380460.1| type III secretion system protein [Chlamydia trachomatis 70]
gi|255502995|ref|ZP_05381385.1| type III secretion system protein [Chlamydia trachomatis 70s]
gi|76167334|gb|AAX50342.1| SctU [Chlamydia trachomatis A/HAR-13]
gi|231272740|emb|CAX09644.1| type III secretion system inner membrane protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231273757|emb|CAX10538.1| type III secretion system inner membrane protein [Chlamydia
trachomatis B/Jali20/OT]
gi|289525135|emb|CBJ14607.1| type III secretion system inner membrane protein [Chlamydia
trachomatis Sweden2]
gi|296434679|gb|ADH16857.1| type III secretion system protein [Chlamydia trachomatis E/150]
gi|296435608|gb|ADH17782.1| type III secretion system protein [Chlamydia trachomatis G/9768]
gi|296436531|gb|ADH18701.1| type III secretion system protein [Chlamydia trachomatis G/11222]
gi|296437468|gb|ADH19629.1| type III secretion system protein [Chlamydia trachomatis G/11074]
gi|296438396|gb|ADH20549.1| type III secretion system protein [Chlamydia trachomatis E/11023]
gi|297139967|gb|ADH96725.1| type III secretion system protein [Chlamydia trachomatis G/9301]
Length = 360
Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+A Q D V+ L + + + +P L G+ + P + KP
Sbjct: 62 TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + + +K+ + + + +KS KI I+ I L +++ P
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L + IP Y+AV +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344
>gi|254511494|ref|ZP_05123561.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
KLH11]
gi|221535205|gb|EEE38193.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
KLH11]
Length = 362
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 1/337 (0%)
Query: 13 APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQR 72
+ +K+E A +G S + S+ ++ I LL ++ + VL+ + Q
Sbjct: 13 EATPQKLEKARKKGEVAKSNDLSVVAAYAGLFIALLTAGQYTAQNLGTLFVVLIDQSDQI 72
Query: 73 K-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
L V + + +A V ++ + S + QR V + +KP R+S
Sbjct: 73 ATLLTQGPAVVPVAGMLKAAMVPVSALFIVPAAAVLLSLIAQRALVFAPSKLKPRASRIS 132
Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
+ K + L F KSFVK+++ GT + + L + +L +A S +
Sbjct: 133 IPSNAKNKFGRGGLFEFAKSFVKLLIYGTCLALFLQAHLPEILTASAAPARSSILLMMTL 192
Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+ + L +++ + ++D W + + K +MS++E++DE K S G+P +K +++ A+
Sbjct: 193 LTRFLFIVITIALAIGIVDYLWQHAEHMRKNRMSRKEVQDETKDSEGDPHVKQQRRQRAQ 252
Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
++MM +A ++I NPTHYA+AL++ + APV VAKG + +A +R A +
Sbjct: 253 EIAANQMMADVPKADVVIVNPTHYAVALKWSREAGSAPVCVAKGVDEVAATIRATADDAG 312
Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+PI +P AR+L V I + +Y+ VA I
Sbjct: 313 VPIHSDPPTARALHATVEIGQEVTEEYYRPVAAAIRF 349
>gi|171915731|ref|ZP_02931201.1| Type III secretory pathway, component EscU [Verrucomicrobium
spinosum DSM 4136]
Length = 347
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 84/341 (24%), Positives = 177/341 (51%), Gaps = 3/341 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ KK+ DA +G S++ + +A + + + + +L +L
Sbjct: 3 EKNEPPTPKKLRDARKKGQVAKSQDVGTAALTIASFVTIGIMWPSMVEQ-AKELILLPVQ 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + S + L+ + + +P L++ M+ G+ + Q +L +KP K
Sbjct: 62 YYDKPFQQGS--MELMLAIGRKVLLMSLPILMVVMVVGLAAGFGQIGFMLTFEPLKPELK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ + K+I+S+ +LV +KS +K+ ++G II + + S+L
Sbjct: 120 KLNPMDKAKQIFSMKSLVELLKSTIKVGVIGIIIYYVTKASLDPLTRLPYGGEESVLTAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + +++ + D + +Q +LKMSK E+K E K+S GNP IK ++K
Sbjct: 180 QPMIKALTMNVVMAYIIIAAADFFFQKYQHIKQLKMSKDEVKREYKESEGNPEIKGKRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+A+ + M T +A++++TNPTH A+A+ Y + ++ P ++AKG++ +A++M ++A
Sbjct: 240 LAQEAAQSDTMGRTRKASVVVTNPTHLAIAIYYDENDDKMPRVLAKGEDHVARRMVEVAR 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
E IP+ + LAR+L++ V I+ +P + +A+++ +
Sbjct: 300 EEGIPVMQHVPLARALYENVDIDRFVPSDLIEPMAEVLRWV 340
>gi|289433957|ref|YP_003463829.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170201|emb|CBH26741.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 348
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 183/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGGMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL +++ I + ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPP-----NLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLKQIFSLFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|325475307|gb|EGC78492.1| FlhB [Treponema denticola F0402]
Length = 390
Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 8/352 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ KI A EG S++ + +L +I L+ S+ +
Sbjct: 33 EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
T + + + L + V P + ++ G+ +IQ + + ++
Sbjct: 93 FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148
Query: 125 PSFKRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P FKRV + KR +S L N KS K++++G I + + N M+ + ++
Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ + T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P+
Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+
Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGVMPAPMVISKGVDATAQ 328
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++IA E+NIP E LAR+L+ V + IP +YK+++ + KIY K
Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYKSLSIIFLKIYSMK 380
>gi|255264526|ref|ZP_05343868.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
gi|255106861|gb|EET49535.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
Length = 374
Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 3/349 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E+D K ++KK+EDA +G P S + + +S LI + F S I +
Sbjct: 15 MAEDDT--EKPHEATAKKLEDARKKGEFPKSVDLTTSASYAGMLIVMAVFGSFSIERFGA 72
Query: 61 DLHVLLASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ L++ + ++ + L + + P + + + + + QR V
Sbjct: 73 LMVQLISEPVALAHVAFLAPGGAQAKWVILGLATQLAPWFTVPALCALVALVTQRAIVFA 132
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P R+SL K + + L F+KSF K+ + I+++ L+ +L ++
Sbjct: 133 PTKLAPKISRISLLSNAKNKFGRSGLFEFLKSFSKLTIYSIILSVFLSIKLPIILSSMTT 192
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P I + ++L ++L+ + +D W + + K MS QEIKDE K + G+
Sbjct: 193 QPRLISAQLATLIVELLSLVLVVSIIIGGVDYLWQHAEHLRKNMMSDQEIKDEHKNNEGD 252
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ ++M+ A A ++I NPTH+A+AL++ ++ P +AKG + I
Sbjct: 253 PGMKQERRQRGYDIAMNQMLGAVEEADVVIVNPTHFAVALKWDRSRGSVPKCLAKGVDEI 312
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
A ++R+ A E IPI +P AR+L+ V I I P YKAVA I
Sbjct: 313 AARIRERAAEEAIPIHSDPPTARALYATVEIGQEIRPDHYKAVAAAIRF 361
>gi|15604810|ref|NP_219594.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
gi|255506666|ref|ZP_05382305.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
gi|3328487|gb|AAC67682.1| Yop proteins translocation protein U [Chlamydia trachomatis
D/UW-3/CX]
gi|297748220|gb|ADI50766.1| SctU [Chlamydia trachomatis D-EC]
gi|297749100|gb|ADI51778.1| SctU [Chlamydia trachomatis D-LC]
Length = 360
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+A Q D V+ L + + + +P L G+ + P + KP
Sbjct: 62 TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + + +K+ + + + +KS KI I+ I L +++ P
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L + IP Y+AV +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344
>gi|121607921|ref|YP_995728.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
gi|121552561|gb|ABM56710.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
Length = 387
Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ K+ S +K++ A +G SRE + + A + + + L
Sbjct: 3 SSQEKSLPASGRKLQKARADGQGARSRELLHLAILGAGSAGMWLLAPQWLDRMQLALSRQ 62
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
LA ++ L + L +L + + L +L+ ++P
Sbjct: 63 LAFDAAAIAA-PGTMLDRLRDMVLPGLVAGTGFAVLTGVAALVGALGAGGWILSTRPIQP 121
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F R+ G+ ++S + N +K + ++G + L + T+ + L
Sbjct: 122 RFSRLDPVAGLTHLFSRQQMANVLKMVLMTGVLGVVAWQFLAGSMATVAMLVLQPSPRAL 181
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ L +LL + ++D+ + ++L+MS QE++ E ++S GNP K R
Sbjct: 182 GLLVDWLGAGLGWLLLVLLLAALVDVPMQAWFFKARLRMSHQEVRQEHQESDGNPHTKGR 241
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ R + A RA ++ NP HYA+ALRY + AP ++A+G +L+A ++R
Sbjct: 242 IRQRQRDLAERASVGAVPRADFVVMNPAHYAVALRYDEKTMGAPQVIARGTDLLAFRIRD 301
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A EH +P+ + P LAR+L+ ++ AIP Y AVAQ++ +Y K
Sbjct: 302 LAREHGVPVLQSPRLARALYAHAALDQAIPAPLYAAVAQVLAHVYRLK 349
>gi|167572950|ref|ZP_02365824.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
C6786]
Length = 377
Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 157/345 (45%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK+ DA +G S E + + L Y LF + + + + + V +A
Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L + R + +L + + + + Q P+L + +KPS
Sbjct: 63 VNDDFAAATARWTSALGAV---LIRFTLGMAVLVIAMTVAAAIAQIGPLLAVEALKPSLD 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K+++S+ +L F KS K+ ++ I + + ++ + L +
Sbjct: 120 KINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAVS 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + ++ F + D + + +L MS ++IK E K S GNP IK++++
Sbjct: 180 TQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R + +++T+++ NPTH A+ L Y + E P ++ G++ +A + +A
Sbjct: 240 IHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+P+ E LA +L ++ + IPP ++ VA L+ +
Sbjct: 300 RERVPVVENVPLAHALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344
>gi|159045796|ref|YP_001534590.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
gi|157913556|gb|ABV94989.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
Length = 362
Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 162/349 (46%), Gaps = 1/349 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE+++PD+K S KK+ DA +G S + S ++ L+F + + +
Sbjct: 1 MSEDESPDDKPFEASEKKLLDARKKGELVKSTDLIATGSYGGLILGLVFAGAGTLTISAA 60
Query: 61 DLHVLLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ LL A E + L L + L M+ I S ++QR V
Sbjct: 61 TMQGLLREADTLAPELFAGGASSISLTLILGTVGALSLWFFLPMLGAIASLVLQRALVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
++P R+S+ K + L F+KS K+++ ++ + TM+ +
Sbjct: 121 PTKLEPKLNRISILSNAKNKFGREGLFEFLKSTFKLVVFSILLGLLFMYELDTMISLAAQ 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+I+ F+ + + L ++ L + +D W Q K +MS+QE+ DE K + G+
Sbjct: 181 PVSAIIGFVFYLLIEFLALVFLATLLIGGVDYIWQRAQHLRKNRMSRQEVVDETKSAEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P K ++ A +M+ A++++ NPTHYA+AL++ + AP++VA G + +
Sbjct: 241 PHSKQYRRQRAIEIATQQMLADVPDASVVVVNPTHYAVALKWDRFSPTAPIVVASGVDHV 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
A +R+ A E +PI +P AR+L+ + IP +KAVA I
Sbjct: 301 AAAIRQRAQEAGVPIHRDPPTARALYATCKLGQEIPRAQFKAVAAAIRF 349
>gi|238764055|ref|ZP_04625010.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
ATCC 33638]
gi|238697726|gb|EEP90488.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
ATCC 33638]
Length = 358
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 5/342 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + K E P++K++ +A +G S E + + + Y + V
Sbjct: 1 MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGIQLAVLVAYFFLAGDTLLDQVGV 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + Q ++ I + +V ++ I + L Q P+L
Sbjct: 59 LIRSSIKQLQQPFTFALARIG---SECMAVLIHIVGILGGALILMTIIAGLAQVGPLLAT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V + ++ K+++S+ +L KS +K+ ++ I L +
Sbjct: 116 KAVAFKGEHINPINNAKQLFSLRSLFELTKSLLKVGVLTLIFGYLLARYASSFGYLAYCG 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + +L ++ ++LD + + +LKMS +E+K E K S G+P
Sbjct: 176 SYCAIPVFGTLMSWLLGALIACYGVFSLLDYSFQRYNTLKQLKMSHEEVKREHKDSDGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +++ + + + R+T ++ NPTH+A+ L Y + PV++ KG+ A
Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHPDDAPLPVVIEKGKGERA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ K+A + IPI E +LAR+L + V IP ++ V
Sbjct: 296 ALIIKLAQQQGIPIVENIALARTLHRDVACGDTIPEPLFEPV 337
>gi|257457600|ref|ZP_05622767.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
35580]
gi|257444986|gb|EEV20062.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
35580]
Length = 383
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 172/351 (49%), Gaps = 8/351 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ KI A EG S++ + +L L+F S + L
Sbjct: 27 EDEGRTEDPTDYKIRKAREEGRVAKSQDINAALVLLFPAGALIFLSSFFLEECMEILRFF 86
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
+TQ + +L +P L+ M+ G+ + ++Q + + ++
Sbjct: 87 FLRSTQSDINS----GIWFGIFVQYFLKLALPLALIAMLAGVIANILQNNGFLFSTKPIQ 142
Query: 125 PSFKRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P F ++ + KR +S L NF KS K++++ + + + N ++ +S +
Sbjct: 143 PQFNKIVPNFMRFFKRALFSAEGLFNFAKSLTKVVVLVFVSFLMIRANLPHFIELLSVSF 202
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
++ K+L L + L + D + Q+ LKM+KQEIK+E K+ G+P
Sbjct: 203 PQAVFFIAGLGAKLLATAALLLLILAIPDYFFQRKQFIDSLKMTKQEIKEEYKELEGDPQ 262
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K R + ++ + + +A ++ITNPTH+A+A+++ AP+++AKG + +A+
Sbjct: 263 VKGRIRQQMQAILSQNAIRNVPKADVVITNPTHFAIAMQWDSKTMAAPMVLAKGADAMAQ 322
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++ IA EHNIP+ E LAR+L+ +V I IP +Y+A++ + ++Y
Sbjct: 323 RIKAIAREHNIPLIENKPLARALYAKVQIGDIIPEEYYRALSLVFAEVYTL 373
>gi|15607000|ref|NP_214382.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
gi|6225349|sp|O67813|FLHB_AQUAE RecName: Full=Flagellar biosynthetic protein flhB
gi|2984250|gb|AAC07777.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
Length = 350
Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 184/353 (52%), Gaps = 8/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E ++KTE + K EGN S E + +L L+ LLF + +
Sbjct: 1 MAE----EHKTERATPYKRRKVREEGNVAKSHEIASSLVVLLSLLLLLFLGTY----IAK 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ ++ + T DIS + L + + +++ P L ++ I S++ Q + L
Sbjct: 53 EVILIFLAVTGYVHADISELGSLYENFYENIVKVLTPLFFLALLVVILSHVAQFGFIFTL 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++R++ EGIKR+ S+ L +K+ +K L+ I L + + L +
Sbjct: 113 KPLSFKWERINPFEGIKRLISLTTLFETVKNTLKAFLLIGIAVFVLKGSLYFFLSSSTYP 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L T LI + + + LD + Q+ K+ MS++E+K+E KQ G+P
Sbjct: 173 LAETLKSFIKTSAITLITLGVVALLIAFLDYAFKRWQYEKKIMMSRRELKEEYKQLEGHP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K+R K+ R + +MM +AT++ITNPTH A+AL+Y ++ APV+VAKG+ IA
Sbjct: 233 EVKSRIKARMRELAKSRMMAEVPKATVVITNPTHIAIALKYNPEKDKAPVVVAKGKGTIA 292
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+K+ +IA ++IP+ +P LAR+L+ V + I P FYKAVA++I + KK
Sbjct: 293 QKIVEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVAEIIAYVMFKK 345
>gi|217976220|ref|YP_002360367.1| flagellar biosynthesis protein FlhB [Methylocella silvestris BL2]
gi|217501596|gb|ACK49005.1| type III secretion exporter [Methylocella silvestris BL2]
Length = 359
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 135/352 (38%), Positives = 218/352 (61%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +++TE + KKI D L GNAP SREA+LF+S+ A LI FF I S+T
Sbjct: 1 MADE-STESRTEEATEKKIGDELERGNAPFSREAALFASVSAMLIIGAFFAQQCIASMTL 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LH LL A +L + + V L+ +S +++I ++F G+ + +Q P L +
Sbjct: 60 LLHHLLDDAGGVRLRNGNDAVALMKLVSWDVFKVLIAPFVVFAAGGVLASALQNAPRLVV 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P+FKR+SL EG +R++ F KS VK+ + I+ L +++ ++
Sbjct: 120 DRILPNFKRISLTEGWQRLHGARGYAEFSKSVVKLASISVIVLAVLQSQQNKLVNAVALE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++ K++ ++ + A L +D+ WS W ++MS+QEIKDE+KQS G+P
Sbjct: 180 PEALPELILSVAMKLMSVVCIVTAALLAIDLVWSRFHWRRDMRMSRQEIKDEMKQSDGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ K R +S+A+ R+R M+ A +AT++I NPTHYA+ALRY++ E AP++++KGQ+LIA
Sbjct: 240 VRKARLRSLAQDRVRKNMIAAVPKATLVIANPTHYAIALRYVKEEGGAPMVISKGQDLIA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R++A H+IPI E+ LARS++ V ++ IPP FYKAVA+LI+ +Y K
Sbjct: 300 LKIRELAERHSIPIIEDKLLARSMYDSVEVDHPIPPQFYKAVAELIHYLYSK 351
>gi|2444073|gb|AAB71508.1| cytoplasmic membrane component required for type III
(contact-dependent) secretion [Chlamydophila caviae]
Length = 360
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + + +P L GI + P + KP
Sbjct: 62 QA--PINHDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + + +K+ + + L+ +KS +KI I+ ++L +++ +P I
Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIGVI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|299822255|ref|ZP_07054141.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
gi|299815784|gb|EFI83022.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
Length = 348
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 176/350 (50%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE P+ ++I+ A EGN S+E + S+L + FF I ++ +
Sbjct: 1 MA----KDNKTEKPTPRRIKKAREEGNVAKSKELNNAFSLLIVAGMIFFFGKWWIGNMVT 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + L ++++P +++ ++ GI +Y +Q + +
Sbjct: 57 AFKALLEQPP-----TLGNASSYSLFFILQFGKVLLPVMVMVLVIGILNYAVQVGFLFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP FKR++ KR++S+ +V +K+ + I L+ + + T++ F N
Sbjct: 112 KSIKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSAVAYKGFQSHLQTLISFTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + + + L I + +LD + +++ L+MSKQ+IK+E+K S G P
Sbjct: 172 WLYSLRQILQLFKNEFLALFLIIVVIGLLDFLYQRYEYKKGLRMSKQDIKEEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGAITKKMLDATFVVNNPTHISVVMRYDKGKDHAPKLLAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R+IA IP+ +AR ++ I Y AV +++ ++
Sbjct: 292 LFIRQIAETDGIPMITNRQVARMIYYSTNEEEYIQEDLYAAVIEIMKELM 341
>gi|294675615|ref|YP_003576230.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
1003]
gi|294474435|gb|ADE83823.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
1003]
Length = 362
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D +K P+ +KIE A +G+ S E + + A +I L F + S +
Sbjct: 1 MSEEDDS-SKEFDPTPQKIEQARKQGDLVKSTEVTGAAVYAAIVITALAFGKSSLESFGT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
VL+ A ++ + + ++ + V P LLL + + + QR V
Sbjct: 60 WASVLIDQADSISVQLLGGGTVVAGNILGRMALTVAPWLLLPGVLVLAALAAQRAIVFAP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+ K+ + L F KSFVK++++ I+ + +L
Sbjct: 120 EKLMPKVNRIDPIANFKQKFGSTGLFEFAKSFVKLVVISIILGNFMLRELPAILLSQKFE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L+++LL + +D W + + KM+++E+ DE+KQS G+P
Sbjct: 180 ATVVAVSFPQMIVEFLLLMLLLAGVIAAIDYLWQRFDFLRRNKMTRKELTDEMKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +++ A +M+ ++A ++I NPTHYA+AL++ + AP+ VAKG + +A
Sbjct: 240 HIKAQRRQKAIEIATKQMIADVAKADVVIVNPTHYAVALKWERGAKRAPLCVAKGVDEVA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R++A E +PI +P AR+L+ V I I P Y+ VA I
Sbjct: 300 ARIREVAAEAGVPIHSDPPTARALYAAVDIGQEIHPDHYRPVAAAIRFAEKM 351
>gi|15834985|ref|NP_296744.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270285154|ref|ZP_06194548.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270289175|ref|ZP_06195477.1| type III secretion system protein [Chlamydia muridarum Weiss]
gi|301336549|ref|ZP_07224751.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
gi|7190408|gb|AAF39227.1| type III secretion inner membrane protein SctU [Chlamydia muridarum
Nigg]
Length = 360
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFR 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+A Q+ D V+ L + + + +P L G+ + P + KP
Sbjct: 62 TAPQQ--HDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E +K+ + + + +KS KI I+ I L +++ P
Sbjct: 120 KKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL A+++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L + IP Y+AV +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344
>gi|294140998|ref|YP_003556976.1| type III secretion system EscU protein [Shewanella violacea DSS12]
gi|293327467|dbj|BAJ02198.1| type III secretion system EscU protein [Shewanella violacea DSS12]
Length = 349
Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 153/350 (43%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K++++A N G S E + L Y LF + S+
Sbjct: 1 MAE------KTEKPTEKQLKEARNRGQVIKSPEIVTGLQMAIILGYFLFEGQNLMQSI-- 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++++ ++ L + +L ++ A R + L+ + I + Q PV
Sbjct: 53 -MYLINSTIDAINLPLETAANQILDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPS ++++ K++ S ++ +K+ VK+ ++ + L +
Sbjct: 112 ESLKPSMNKLNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRYVNSFQYLPLCG 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + L V D + +LKMSK +IK E K S GNP
Sbjct: 172 EECGIEVISTLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ I R + ++++++ NPTH A+ L Y E P+++ K ++ +A
Sbjct: 232 EVKQKRREIQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+ +A + IP+ E LAR+++ Q+ S I ++ VA L+ +
Sbjct: 292 LHIVGMAEKAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLLRVVM 341
>gi|254446395|ref|ZP_05059871.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
gi|198260703|gb|EDY85011.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
Length = 369
Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 187/351 (53%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTE P++K++ D +GN P ++E + ++LA L+ ++F + S
Sbjct: 1 MADTD-QDSKTEKPTAKRLTDEQEKGNFPQAQEVGVTFTLLAGLLVVMFSGQTIASNAFS 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L ++I + + + RL P +L M+ GI + +Q
Sbjct: 60 FSSSILGNLSSIDLST-NNISYFFNEVIVVLGRLAAPFMLAGMVSGIIAGGLQTRFRFTP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ F +++ G K++ S + V F +K+ +G I+ +++ + + + +
Sbjct: 119 KALGIKFNKLNPINGAKQLVSKDVFVRFGIDLLKMGAMGLILWVAMRKIIKDPIFYAPID 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ T+ V I + + + + ++ W + K+KM+K+E+K E K +P
Sbjct: 179 IVHVGMFITDTLVYVFIRLTIAVGLIAIISYLWQSKKTMDKMKMTKEEVKQERKDQDMSP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ + +A ++ +M++ + A +++TNPTHYA+AL+Y + + AP+++AKG+N A
Sbjct: 239 EIRKARMQMAMRLMQGQMLDEVATADVVVTNPTHYAVALKYERGVDSAPMVLAKGENAFA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++++++A EH +P+ E +AR L+K + +AIP +++VA+++ +Y
Sbjct: 299 QRIKEVAAEHGVPVVENKMVARMLYKVAQVGAAIPMEMFQSVAEILAFVYK 349
>gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC]
gi|29834570|gb|AAP05206.1| type III secretion protein, hrpY/hrcU family [Chlamydophila caviae
GPIC]
Length = 360
Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + + +P L GI + P + KP
Sbjct: 62 QA--PINHDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + + +K+ + + L+ +KS +KI I+ ++L +++ +P I
Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ +PI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|311695200|gb|ADP98073.1| flagellar biosynthesis protein FlhB [marine bacterium HP15]
Length = 341
Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats.
Identities = 81/317 (25%), Positives = 157/317 (49%), Gaps = 1/317 (0%)
Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
+ +LA +L F + S+ + + + + D+ H+ L S A+ +
Sbjct: 1 MAVLLAGAGGMLMFGASLGASLEAIMRDSFV-IERSAIFDMRHMSVQLIESSKEAAWALS 59
Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
P L+L ++ I + +++ V P R+ +G+ R++S+ +L+ +K+ K+
Sbjct: 60 PILVLLLIAAIFGSIGIGGLLISGKAVAPKLNRMDPIKGLGRMFSMRSLIELVKAIAKVG 119
Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
LV + + L +L + H +T+ ++ + +D+ + +
Sbjct: 120 LVMALAILILDLRTEDLLAIAEEPVVPAMEHVLWTIAWSFFLLSCATIIIAAIDVPFQIY 179
Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
KL+M+KQE+KDE K + G P +K + + + R + +MM+ A ++ITNPTHYA
Sbjct: 180 DHQKKLRMTKQEVKDEYKDTEGKPEVKGKIRQLQREMAQRRMMQDVPTADVVITNPTHYA 239
Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
+AL+Y Q AP++VAKG + +A K+ +IA E+ + I P L R+++ I IP
Sbjct: 240 VALKYDQKAMAAPIVVAKGADEVAFKIMEIARENKVEILRTPPLTRAVYHNTDIGEEIPD 299
Query: 337 VFYKAVAQLIYKIYHKK 353
Y A+AQ++ ++ +
Sbjct: 300 GLYMAIAQVLAYVFQLR 316
>gi|332162921|ref|YP_004299498.1| flagellar assembly protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667151|gb|ADZ43795.1| Flagellar assembly protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 377
Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 167/340 (49%), Gaps = 3/340 (0%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+S K+ A +G+ P S++ ++ + ++ LI L F + + +A +
Sbjct: 12 PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
++D + I LL + ++ + + I + L+ + P FK++S
Sbjct: 70 IDDPTAIEQLLLANLFIFFKFLLTLAPIPL-VSILATLVPGGWNFTPVKLIPDFKKLSPL 128
Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
GIK+I+S +N +K K +V + + + + +L + + F
Sbjct: 129 AGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYH 188
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+L+ + I +DI S + + K+KM+KQE+K E K + GNP IK R + + R
Sbjct: 189 GILVYFIAIIVIFAAIDIPLSNYLFTKKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQF 248
Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
++ + A +IITNPTH+++AL+Y + AP ++AKG++ IA +R +A ++I
Sbjct: 249 AMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIE 308
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
I E P LAR+++ +N +P Y+A+AQ++ + K
Sbjct: 309 IVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348
>gi|89898354|ref|YP_515464.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
gi|89331726|dbj|BAE81319.1| type III secretory flagellar biosynthesis Yop translocation protein
U [Chlamydophila felis Fe/C-56]
Length = 360
Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + +P L GI + P + KP
Sbjct: 62 EA--PINHDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I
Sbjct: 120 KKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVSPLVIAAI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC]
gi|313847984|emb|CBY16981.1| putative membrane transport protein [Chlamydophila psittaci RD1]
gi|325506497|gb|ADZ18135.1| type III secretion system protein [Chlamydophila psittaci 6BC]
gi|328815072|gb|EGF85061.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
gi|328914653|gb|AEB55486.1| type III secretion protein, hrpY/hrcU family [Chlamydophila
psittaci 6BC]
Length = 360
Score = 285 bits (731), Expect = 4e-75, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + +P L GI + P + KP
Sbjct: 62 EA--PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I
Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIVETAGVSPIVIAVI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|110615403|gb|ABF04070.1| putative part of export apparatus for flagellar proteins [Shigella
flexneri 5 str. 8401]
Length = 358
Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats.
Identities = 87/312 (27%), Positives = 165/312 (52%), Gaps = 1/312 (0%)
Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL 101
+ + F ++ L L ++D + I+ + L A ++P +
Sbjct: 1 MGVSVIWFGGVSLARRLSGMLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISG 59
Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
++ + S ++ V + ++P F +++ GIKRI+S +K+ +K ILVG++
Sbjct: 60 VVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSV 119
Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
L ++ M+ ++ +P + + +A V ++++L + + D+ + K
Sbjct: 120 TGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKK 179
Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
L+MS+Q+I+DE KQS G+P +K R + R+ R +MM +A +I+ NPTHY++AL+Y
Sbjct: 180 LRMSRQDIRDEFKQSEGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQY 239
Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
+ + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y A
Sbjct: 240 DENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAA 299
Query: 342 VAQLIYKIYHKK 353
VA+++ ++ K
Sbjct: 300 VAEVLAWVWQLK 311
>gi|332526006|ref|ZP_08402146.1| Translocation protein in type III secretion [Rubrivivax
benzoatilyticus JA2]
gi|332109851|gb|EGJ10479.1| Translocation protein in type III secretion [Rubrivivax
benzoatilyticus JA2]
Length = 387
Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 163/350 (46%), Gaps = 5/350 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTE P+ KK++DA +G SR+ S +LA L ++ + + +
Sbjct: 1 MADKNDGGDKTEKPTPKKLQDARRKGQVSKSRDLSSTVPLLAWLAVVVLGSAYAGRELGA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LAS + + L + L LL G+ +Q PV +
Sbjct: 61 LADAALASIGRPFEVAAPALGEL---AWRTTLWLSALALLPAAALGVLVEFLQAGPVFSA 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP + ++ EGIKR++ ++NLV KS K +L+ I + L + A
Sbjct: 118 ERLKPKAEHLNPVEGIKRMFGLDNLVELAKSLAKCVLLLAIGALVLRGVLADSARLLQAP 177
Query: 181 --PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
++ R+ L L+ + LD+ W H + KL+MS ++IK E K+S G
Sbjct: 178 AGVGAVGTLLLEVTRQALTWTLVAFVLVAALDMAWQRHSFTKKLRMSLRDIKQETKESEG 237
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P ++ +++ + + +A +A +++ NPTH A+A+ Y + P + AKG++
Sbjct: 238 DPQVRQQRRQAHQEWSQRNAQQAARQANVLVVNPTHVAIAIDYDRDTCPVPTISAKGEDH 297
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+A+ MR+ A E +PI LAR L + + +P + VA++I
Sbjct: 298 VARAMREAAEEAGVPIVRNVPLARDLLGRGEVGQLVPADLFDVVAEVILW 347
>gi|54124949|gb|AAV30217.1| AscU [Aeromonas hydrophila]
Length = 352
Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA N+G S+E + IL+ + L+ + + + L
Sbjct: 2 SGEKTEQPTAKKLRDARNKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLM---L 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ L + ++ +L + L IP L + + + S++ Q +L+ +KP
Sbjct: 59 IPESHLNLPFSQALNHVVENLLQELAYLCIPILAVSALVVLVSHIAQYGFLLSGESIKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML I
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIEGNLQAMLQLPGCGMSCIPP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ + + + + D + +HQ +LKMSK E+K E K+ G+P +K+++
Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHHQHIKQLKMSKGEVKREYKEMEGSPEVKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + M R+++I+ NPTH A+ +RY + E PV+ K + A + KI
Sbjct: 239 RQFHQELQPSNMRADVKRSSVIVANPTHIAIGIRYGRGETPLPVVTLKFTDAQALLVCKI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A E IP+ + LAR+L++ IN+ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQ 343
>gi|302338096|ref|YP_003803302.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
11293]
gi|301635281|gb|ADK80708.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
11293]
Length = 379
Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 171/349 (48%), Gaps = 8/349 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +KI A EG S E + +L ++ L ++ L
Sbjct: 28 EDEGRTEDPTEQKIRKAREEGKVAKSSEFTSSLVLLFPIVALGILAPRMFGTMEEMLRYY 87
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L+ ++ L + RLV P + + + +IQ + + P
Sbjct: 88 LSLLSEADLT-----GEQIVAFFRYFIRLVAPVASVAVAAALFGNIIQVGFLFTSKPITP 142
Query: 126 SFKRVSLREG--IKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
F ++ R G I+R + S L N MKS +K++++G I I++ N F++A
Sbjct: 143 DFSKIVPRFGKFIQRSFLSGEALFNLMKSILKVLIIGIIAYINIKNNLDIFAFFVNAPFE 202
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
++L+ + + L++ D + Q LKM+KQEIK+E K G+P+I
Sbjct: 203 VAFSTIGSVAFRILVESSIALLALSLPDYLFQRRQHRESLKMTKQEIKEERKTMEGDPLI 262
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K+R + R + M+ A +IITNPTH+A+ + + + AP+++AKGQ+ +A++
Sbjct: 263 KSRLRERMRDVLNRNMIRKVPEADVIITNPTHFAVGMEWERERMVAPMVIAKGQDNMAQR 322
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++ IA EH++PI E LAR+L+ +V + IP +Y+ +A ++ ++Y
Sbjct: 323 IKAIAREHDVPIVENKPLARALYAEVEVGEVIPERYYEVMATILAEVYR 371
>gi|161503484|ref|YP_001570596.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864831|gb|ABX21454.1| hypothetical protein SARI_01560 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 351
Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats.
Identities = 79/344 (22%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y F I + ++ L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + + L S + G+++ + S +Q V+ +
Sbjct: 63 INKPFSYALTQLSYSLVDSLSSVILFLGAGIII---STVASVFLQVGVVIASKAIGFKSD 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I+ T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFFYYYVSTFRALPYCGLACALPVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 FCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|114799674|ref|YP_759006.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
15444]
gi|114739848|gb|ABI77973.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
15444]
Length = 357
Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 168/354 (47%), Gaps = 1/354 (0%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
M+E D K S +++ DA +G+ P S+EA+ F+ IL LI L + +
Sbjct: 1 MAEQDQDSGEKEFDASEQRLRDARKDGDVPQSKEANAFALILGILIAALILDAVVGPKLF 60
Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
D +L + + + P LL+ + + +IQ+ +
Sbjct: 61 DDFSRILYHGDAFAADIFEGDGGATWAWIATTLLALSPLLLVMAALVLVALIIQQSIAFS 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P K+++ + IK Y L +F+K VK++ + T+ L + S
Sbjct: 121 AKKIMPDMKKINPVDNIKNKYGTKGLTDFLKDTVKMLFAAGLGTLFLIQFTRDYYGSSSV 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ F ++++ F L LD+ + KL+M+++++K E+KQS G+
Sbjct: 181 DTADFYQFTFNQTLRLILYFFAFQFVLAALDLPLQWRIHSHKLRMTREDMKKEMKQSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P ++ +++ A R +M++ AT+++ NPTHYA+AL++ APV VAKG + +
Sbjct: 241 PHMRQQRREKATKISRGQMLQNVKSATVVMVNPTHYAVALKWDPDSKLAPVCVAKGTDHL 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+R++A E+N+PI+ +P RS++ V ++ I + AVA I + +
Sbjct: 301 AMKIRELAIENNVPIYSDPPATRSIYSMVEVDQEIQAEHFAAVAAAIQFVDRLR 354
>gi|225871939|ref|YP_002753393.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
51196]
gi|225794521|gb|ACO34611.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
51196]
Length = 409
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 83/348 (23%), Positives = 170/348 (48%), Gaps = 8/348 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+TE S ++ ++A +G+ P SR+ + +++LA + L + +L
Sbjct: 2 SGERTEKASPRRKQEAREKGDIPHSRDLTSAAAMLAGTLVLGWAGPMWEARWAGSYSEML 61
Query: 67 ASATQRKLEDISHIVFLLT--HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNHV 123
+ R D + +L ++ ++ L + + + Q V +
Sbjct: 62 DLSQPRSWLDGQMVEKMLAIRAAMMTVLWPLVVMFLACFAAAVLAGVAQGRGVQFAGEAI 121
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P +R++ +++ +S L +KS + + + + + E + ++ P
Sbjct: 122 APKIERLNPLTVLQQTFSSRGLTRMLKSALPVAALACFVAGKVREQTAIPVFSLTRLPS- 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
F ++ +++ + + +D + W +L+MSKQE+++E KQ+ GNP ++
Sbjct: 181 ----LFTSMYSLMVAAAAVLFVWSAIDYAVEWWSWEQRLRMSKQEVREEFKQTEGNPEVR 236
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R SI R R + SRA+++ITNPTHYA+AL++ +AP ++AKG++L+A+++
Sbjct: 237 RRIASIRRQLRRKALRADVSRASVVITNPTHYAVALQFSLELMEAPRVLAKGRDLLAEQI 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++ A +P+ E P LAR+L++QV + +IP Y AVA ++ +Y
Sbjct: 297 KQEARWAGVPLVENPPLARALYRQVEVGQSIPFALYAAVAAILAWLYR 344
>gi|258404720|ref|YP_003197462.1| flagellar biosynthesis protein FlhB [Desulfohalobium retbaense DSM
5692]
gi|257796947|gb|ACV67884.1| flagellar biosynthetic protein FlhB [Desulfohalobium retbaense DSM
5692]
Length = 354
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 182/353 (51%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + +TE P+ K+ + EG S+E + + L+ ++ + +
Sbjct: 1 MA-QQGDEERTEEPTEKRRREFREEGKVAQSKEVNTALLLSTALLLWFWYAPNFVEGLER 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A + +V L + L+ P L+L ++ G S IQ + +
Sbjct: 60 FLAGFWDQAGYWNV-TPQAVVGWLGKGLIHLGLLLSPILILSIVVGFLSSYIQFGWLFSP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P K++ +G + S + + +KS K+ +VG++ +L++++ + I
Sbjct: 119 KALQPDIKKLDPIQGAAKFVSKRSAMELLKSLAKVAVVGSVAYWTLSDHFEQAIQLIGQP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I +T ++L+ + + + V+D ++ + ++KM+K+E++DE K++ G+P
Sbjct: 179 IERIFVFIGWTAAEILLKCCIALLFIAVIDFAYTKWEMEEQMKMTKKELQDEHKETEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +SI R R +MM +A ++ITNPTHYA+ALRY ++ +AP + AKG N++A
Sbjct: 239 QLKQRMRSIQRDMARKRMMAEVPQADVVITNPTHYAVALRYDRSSMEAPEVTAKGSNIVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R+IA E +P+ E P +AR L + + +P YKAVA+++ +Y K
Sbjct: 299 QRIREIAEESGVPLVENPPVARVLHG-LELGETVPESMYKAVAEILAYVYSLK 350
>gi|304392516|ref|ZP_07374456.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
gi|303295146|gb|EFL89506.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
Length = 354
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 118/346 (34%), Positives = 195/346 (56%), Gaps = 1/346 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D +K+E PS KKI+DAL++G +SRE ++ +S++ +++ F ++
Sbjct: 1 MSDEDDG-SKSEEPSEKKIKDALDKGQTAVSREVAIVASLIVLTVFVSTFARDMAVGLSD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L A ++ S L ++ AS + L++ ++ + S IQ P +
Sbjct: 60 KLGGLWEHAGTIRILSGSDAATLSGSIAAEASLALAAFLIMVIIGALISAFIQAEPRMVA 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P ++R+S +G KR++ L +F K K+ + T + L M+ +
Sbjct: 120 DRITPKYERISPAKGAKRLFGQQGLFDFAKQLAKLSVATTAVVSVLAGAPEKMMQAMPLG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P+ I + +L ILL + + V+D+ W+ W L+MS +E+KDE+KQS G+P
Sbjct: 180 PYYIGDTVRDLLGGMLTAILLAMVFVAVVDVVWTRFSWRKGLRMSLKEVKDEVKQSDGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+K RQ+S+AR R R++MMEA AT+++ NP H A+ALRY T++ APV+VAKGQ +
Sbjct: 240 IVKARQQSVARDRARNRMMEAVPNATLVVANPIHVAVALRYDPTKDVAPVVVAKGQERLC 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
++R+IA E +P+ E +AR L K VP+ + IP FY VA+LI
Sbjct: 300 WRIREIAEEAGVPVVENIPVARGLHKSVPLGALIPESFYVVVAELI 345
>gi|242280058|ref|YP_002992187.1| flagellar biosynthesis protein FlhB [Desulfovibrio salexigens DSM
2638]
gi|242122952|gb|ACS80648.1| type III secretion exporter [Desulfovibrio salexigens DSM 2638]
Length = 353
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 174/353 (49%), Gaps = 6/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ + KTE + K+I+ A +G+ E +++A +I L
Sbjct: 1 MSKDPS---KTEKATPKRIDKARKDGSVAKGEEMGKIMTLIAGVICLRAIMDMYYEQFYE 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L D + L S + +++P L +Q +
Sbjct: 58 IFQWFFTKGIFIDL-DKQSVYQLFQWCSQKLALILLPLFLFIAFIAFLVLRLQVGKLWTT 116
Query: 121 NHVKPSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
KP F ++ +L +G KR I+++ ++ +KS + I+VG I + L
Sbjct: 117 KVFKPKFSKMFNLVQGFKRLIFNVKTIIRLVKSLLFAIIVGIAPYIIIKNEVGNFLPLFY 176
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
++ H + + K++ +L + L + D+ + + + ++KM+K E+KDE KQ+ G
Sbjct: 177 SSAHELAIYMLQIGYKMVTYTMLPMLVLALADLWYQRYNYQEEMKMTKDEVKDERKQAEG 236
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK +QK + ++ +MM A ++ITNPTHYA+AL+Y AP+++AKG N
Sbjct: 237 DPKIKQQQKQKMMAILQQRMMAEVPNADVVITNPTHYAIALKYDPMVAPAPLVLAKGMNK 296
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+A++++++A E+ +PI E LA++L+KQV I IP YKAVA ++ K+
Sbjct: 297 VAERIKEVARENKVPIRENKPLAQALYKQVEIGDIIPEELYKAVAAILAKLNK 349
>gi|89902466|ref|YP_524937.1| type III secretion exporter [Rhodoferax ferrireducens T118]
gi|89347203|gb|ABD71406.1| type III secretion exporter [Rhodoferax ferrireducens T118]
Length = 385
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats.
Identities = 79/350 (22%), Positives = 161/350 (46%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ ++ S +K++ AL++G SR+ + + + L+ + L
Sbjct: 2 EPSSQDRNLPASERKLQKALDDGQVSRSRDLGHLAVLGTGALSLMALAPLMFDRLRVLLR 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L S + + + ++ + ++ + + + + + S + V +L +
Sbjct: 62 QQL-SFDALAVSNPTTMITRMQDMATAGLIGCVIFAAITTVAVLLSSIAAGGWVSSLKPI 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P F R++ G+ R+++ +K ++ T+ T L+ + + +
Sbjct: 121 MPDFSRLNPLTGMGRMFTKEKFTEVLKMSFVAAMLITLGTTYLSSTIHALAMLVLQPSRA 180
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
L + + ++LL + + ++D+ S++KMS QE+K E K+S GNP +K
Sbjct: 181 ALPMLTEWLTSGMALLLLVVLLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDGNPQMK 240
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ + R + A +A ++ NPTH+A+A++Y AP +V+KG +L+A K+
Sbjct: 241 GKLRQRQREISHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADLLAMKI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R IA + IP+ + P LAR+L+ ++ IP Y AVAQ++ IY K
Sbjct: 301 RDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK 350
>gi|315281330|ref|ZP_07869978.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
gi|313615028|gb|EFR88524.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
Length = 348
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLANMESYSLFYLM-----EFGKVLLPVMIMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|126734112|ref|ZP_01749859.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
gi|126716978|gb|EBA13842.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
Length = 361
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 2/350 (0%)
Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS + + +K PS KK++DA +G S + + ++ L+ +L + ++
Sbjct: 1 MSGQEEEDSDKQYEPSQKKLDDARKKGEIARSADLTTAAAYAGLLLAMLTIGPVALLDLS 60
Query: 60 SDLHVLLASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+ L +LL + L L + + V P + + I S ++QR +
Sbjct: 61 TSLSILLEQSNDLSSLAFAGGGTALHGGILREVAWGVAPWFAVPAVLAIVSVILQRGFLF 120
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ + P R+S G+K + L F KS K+ + ++ L ++ +
Sbjct: 121 TGSKLVPKLNRISPISGVKNKFGRQGLFEFAKSSTKLTIYCVVLGFFLVGQIERIIGSMQ 180
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
P I+ + ++ ++LL L +D W + K +MS++E+ DE+KQS G
Sbjct: 181 LPPRLIIAELGHMLLALMGIVLLISLALGTIDFLWQRAEHTRKNRMSRKEMMDELKQSEG 240
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK +++ +KM+ A ++I NPTHYA+AL++ +++ AP+ VAKG +
Sbjct: 241 DPFIKQQRRQRGHDIATNKMLLDVPTADVVIVNPTHYAIALKWDRSQAMAPICVAKGVDE 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+A ++R+IA E +P+ +P AR+L +V + I Y+AVA I
Sbjct: 301 VAARIREIAAESAVPMHSDPPTARALHAEVTLGQEISQHHYRAVAAAIRF 350
>gi|320187319|gb|EFW62016.1| Flagellar biosynthesis protein FlhB [Shigella flexneri CDC 796-83]
Length = 341
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 86/309 (27%), Positives = 167/309 (54%)
Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
+ +++F + S + ++D + I+ + L A ++P + ++
Sbjct: 1 MCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVL 60
Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
+ S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++
Sbjct: 61 VALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGF 120
Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
L ++ M+ ++ +P + + +A V ++++L + + D+ + KL+M
Sbjct: 121 FLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRM 180
Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
S+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y +
Sbjct: 181 SRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDEN 240
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
+ AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+
Sbjct: 241 KMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAE 300
Query: 345 LIYKIYHKK 353
++ I+ K
Sbjct: 301 VLAWIWQLK 309
>gi|51594685|ref|YP_068876.1| secretion system apparatus protein SsaU [Yersinia
pseudotuberculosis IP 32953]
gi|186893688|ref|YP_001870800.1| secretion system apparatus protein SsaU [Yersinia
pseudotuberculosis PB1/+]
gi|51587967|emb|CAH19570.1| putative type III secretion apparatus protein EscU/SsaU/YscU
[Yersinia pseudotuberculosis IP 32953]
gi|186696714|gb|ACC87343.1| type III secretion protein, YscU/HrpY family [Yersinia
pseudotuberculosis PB1/+]
Length = 355
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 63
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 64 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ + K+++S+ ++ MKS +K+ ++ I L + + L
Sbjct: 121 RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L ++ +++D + + +LKMS E+K E K S G+P IK +++
Sbjct: 181 STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+T ++ NPTH+A+ L Y E P+++ KG + A + +A
Sbjct: 241 LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E +LAR+L + V IP F++ VA L+
Sbjct: 301 QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALEL 344
>gi|170026112|ref|YP_001722617.1| secretion system apparatus protein SsaU [Yersinia
pseudotuberculosis YPIII]
gi|169752646|gb|ACA70164.1| type III secretion protein, YscU/HrpY family [Yersinia
pseudotuberculosis YPIII]
Length = 355
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 63
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 64 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ + K+++S+ ++ MKS +K+ ++ I L + + L
Sbjct: 121 RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQYAPSFGYLTHCGSRCALPVF 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L ++ +++D + + +LKMS E+K E K S G+P IK +++
Sbjct: 181 STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+T ++ NPTH+A+ L Y E P+++ KG + A + +A
Sbjct: 241 LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E +LAR+L + V IP F++ VA L+
Sbjct: 301 QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALEL 344
>gi|56695095|ref|YP_165442.1| flagellar biosynthesis protein FlhB [Ruegeria pomeroyi DSS-3]
gi|56676832|gb|AAV93498.1| flagellar biosynthetic protein FlhB [Ruegeria pomeroyi DSS-3]
Length = 362
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 1/349 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ P+ +K++ A +G S + S+ ++ L+ L + I + +
Sbjct: 1 MSGQDDDSDKSYEPTPQKLQKAREKGEVAKSADLSVVAAYAGLLLALSALGAASITKLGT 60
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L VL+ A +L V + L + ++P L+ I S + QR V+
Sbjct: 61 ALTVLIGQADGLSRLVFEGRAVGPVGGLMGTVGASILPWFLVPAAAVILSVVAQRAFVMA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + P R+S+ + K + L F KSFVK++L + + N ++
Sbjct: 121 PSKLVPKISRISILQNAKNKFGRGGLFEFAKSFVKLLLYSVCLGFFIKLNLSDIVSSAGM 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ + + + ++ + +D W + + K MS++E+ DE K + G+
Sbjct: 181 EARQSVLLMARLLMRFMFLVATVALVIGAIDYLWQHAEHIRKNMMSRKELMDETKDAEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K +++ + ++M+ A ++I NPTHYA+AL++ + APV VAKG + +
Sbjct: 241 PHMKQKRRQKGQEIAMNQMLADVPGADVVIVNPTHYAVALKWSRLPGAAPVCVAKGVDEV 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
A +R+ A E +PI +P AR+L V I I Y+ VA I
Sbjct: 301 AAAIRRSAAEAGVPIHSDPPTARALHAGVEIGQEISEEHYRPVAAAIRF 349
>gi|116872068|ref|YP_848849.1| flagellar biosynthesis protein FlhB [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740946|emb|CAK20066.1| flagellar biosynthetic protein FlhB, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 348
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYAVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|108809999|ref|YP_653915.1| secretion system apparatus protein SsaU [Yersinia pestis Antiqua]
gi|108813554|ref|YP_649321.1| secretion system apparatus protein SsaU [Yersinia pestis Nepal516]
gi|145600944|ref|YP_001165020.1| secretion system apparatus protein SsaU [Yersinia pestis Pestoides
F]
gi|150260678|ref|ZP_01917406.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|162421928|ref|YP_001608225.1| secretion system apparatus protein SsaU [Yersinia pestis Angola]
gi|165926775|ref|ZP_02222607.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165936397|ref|ZP_02224965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. IP275]
gi|166010522|ref|ZP_02231420.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166213930|ref|ZP_02239965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167402227|ref|ZP_02307700.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167426123|ref|ZP_02317876.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167467562|ref|ZP_02332266.1| type III secretion protein, YscU/HrpY family [Yersinia pestis FV-1]
gi|218927480|ref|YP_002345355.1| secretion system apparatus protein SsaU [Yersinia pestis CO92]
gi|229836528|ref|ZP_04456694.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|229840136|ref|ZP_04460295.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842217|ref|ZP_04462372.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229904044|ref|ZP_04519157.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|270488971|ref|ZP_06206045.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
gi|294502345|ref|YP_003566407.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
gi|108777202|gb|ABG19721.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|108781912|gb|ABG15970.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|115346091|emb|CAL18959.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|145212640|gb|ABP42047.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
gi|149290086|gb|EDM40163.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|162354743|gb|ABX88691.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
Angola]
gi|165915513|gb|EDR34122.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. IP275]
gi|165921398|gb|EDR38622.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990612|gb|EDR42913.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166204905|gb|EDR49385.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167048408|gb|EDR59816.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167054834|gb|EDR64636.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229679814|gb|EEO75917.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|229690527|gb|EEO82581.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696502|gb|EEO86549.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229706212|gb|EEO92220.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|262364375|gb|ACY60932.1| putative type III secretion apparatus protein [Yersinia pestis
D182038]
gi|270337475|gb|EFA48252.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
gi|294352804|gb|ADE63145.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
Length = 355
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 63
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 64 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ + K+++S+ ++ MKS +K+ ++ I L + + L
Sbjct: 121 RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L ++ +++D + + +LKMS E+K E K S G+P IK +++
Sbjct: 181 STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+T ++ NPTH+A+ L Y E P+++ KG + A + +A
Sbjct: 241 LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE 300
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E +LAR+L + V IP F++ VA L+
Sbjct: 301 QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALEL 344
>gi|224584067|ref|YP_002637865.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468594|gb|ACN46424.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 352
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGGVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|153948750|ref|YP_001402765.1| secretion system apparatus protein SsaU [Yersinia
pseudotuberculosis IP 31758]
gi|152960245|gb|ABS47706.1| type III secretion protein, YscU/HrpY family [Yersinia
pseudotuberculosis IP 31758]
Length = 356
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 5 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 64
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 65 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 121
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ + K+++S+ ++ MKS +K+ ++ I L + + L
Sbjct: 122 RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF 181
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L ++ +++D + + +LKMS E+K E K S G+P IK +++
Sbjct: 182 STLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQ 241
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+T ++ NPTH+A+ L Y E P+++ KG + A + +A
Sbjct: 242 LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLAE 301
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E +LAR+L + V IP F++ VA L+
Sbjct: 302 QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALEL 345
>gi|332096673|gb|EGJ01664.1| flagellar biosynthetic protein FlhB [Shigella boydii 3594-74]
Length = 343
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 87/312 (27%), Positives = 166/312 (53%), Gaps = 1/312 (0%)
Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL 101
+ + F ++ L L ++D + I+ + L A ++P +
Sbjct: 1 MGVCVIWFGGVSLARRLSGMLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISG 59
Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++
Sbjct: 60 VVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSV 119
Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
L ++ M+ ++ +P + + +A V ++++L + + D+ + K
Sbjct: 120 TGFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKK 179
Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
L+MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y
Sbjct: 180 LRMSRQDIRDEFKQSEGDPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQY 239
Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
+ + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y A
Sbjct: 240 DENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAA 299
Query: 342 VAQLIYKIYHKK 353
VA+++ I+ K
Sbjct: 300 VAEVLAWIWQLK 311
>gi|170743254|ref|YP_001771909.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
gi|168197528|gb|ACA19475.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
Length = 353
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 100/351 (28%), Positives = 176/351 (50%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ +++TE P+ K+++DA+ G+ S E + + + LL +
Sbjct: 1 MAGEGEQEDRTEEPTQKRLDDAIKRGDVATSTEINTLLLLGGFTLVLLVGAGSIARGLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L LLA Q D + L + + + + + + L+Q V
Sbjct: 61 ELRDLLAGLHQVP-GDAAGYAALARRALAALALALAAPVGAAVAAALVGGLLQHPLVWTT 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++RVS G+KR++ F K +K+ LVGT+ + L + +
Sbjct: 120 ETLGAKWERVSPAAGLKRLFGPEAWFQFGKGILKVALVGTVAALVLWGDRDRLDALARLE 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P ++L V +++ IL + + D + +W ++L+M+K EIK+E+K+S G+P
Sbjct: 180 PSALLPATLALVLRLMAGILAAYLVIALGDAAYQRLRWRARLRMTKAEIKEEMKESEGSP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + I +R + +MM A AT+++ NPTH+A+AL Y APV VAKG +++A
Sbjct: 240 EVKARLRRIRATRAKKRMMAAVPGATVVVANPTHFAVALLYETG-MAAPVCVAKGVDVLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++R +A E+ +P+ E P LAR+L V I+ AIP YKAVA++I +
Sbjct: 299 LRIRALAAENGVPVVENPPLARALHATVEIDQAIPTEHYKAVAEVIGFVLR 349
>gi|16764772|ref|NP_460387.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161614161|ref|YP_001588126.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167995056|ref|ZP_02576146.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|197262232|ref|ZP_03162306.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|3024668|sp|P96069|SSAU_SALTY RecName: Full=Secretion system apparatus protein ssaU
gi|1695196|emb|CAA68202.1| secretion system apparatus, SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419943|gb|AAL20346.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161363525|gb|ABX67293.1| hypothetical protein SPAB_01903 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197240487|gb|EDY23107.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205327191|gb|EDZ13955.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|267993311|gb|ACY88196.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157957|emb|CBW17452.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912407|dbj|BAJ36381.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|323129694|gb|ADX17124.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988309|gb|AEF07292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 352
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 80/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|322615094|gb|EFY12017.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619935|gb|EFY16808.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622247|gb|EFY19092.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627769|gb|EFY24559.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632886|gb|EFY29630.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636623|gb|EFY33326.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641184|gb|EFY37826.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644881|gb|EFY41414.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650283|gb|EFY46697.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655856|gb|EFY52158.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660182|gb|EFY56421.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665252|gb|EFY61440.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669509|gb|EFY65657.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673435|gb|EFY69537.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677363|gb|EFY73427.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679974|gb|EFY76013.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687446|gb|EFY83418.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194101|gb|EFZ79300.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198582|gb|EFZ83683.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202908|gb|EFZ87943.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208628|gb|EFZ93566.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211164|gb|EFZ96011.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217605|gb|EGA02320.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218954|gb|EGA03464.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223784|gb|EGA08088.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229407|gb|EGA13530.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232630|gb|EGA16726.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240332|gb|EGA24376.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242679|gb|EGA26700.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245890|gb|EGA29878.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323256473|gb|EGA40206.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260036|gb|EGA43661.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323271476|gb|EGA54897.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 352
Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLTHALIESLTSALLFLGAGVIV---ATVGSVFLQVGGVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|298346009|ref|YP_003718696.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
43063]
gi|315657498|ref|ZP_07910380.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236070|gb|ADI67202.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
43063]
gi|315491970|gb|EFU81579.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 367
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 183/350 (52%), Gaps = 5/350 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
KTE + +K++ EG S++ + + S+ A L +
Sbjct: 2 SDSGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNAR---RQ 58
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHV 123
+ + T K+ S +V L + ++P +L ++ + +IQ V + H+
Sbjct: 59 TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M + +
Sbjct: 119 KPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHISLWN 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+P+IK
Sbjct: 179 LIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A ++
Sbjct: 239 SQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHVAARI 297
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K
Sbjct: 298 REVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347
>gi|200389631|ref|ZP_03216242.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199602076|gb|EDZ00622.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 352
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + +L S + +++ ++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHVLIE---SLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|255022047|ref|ZP_05294053.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
51756]
gi|254968533|gb|EET26089.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
51756]
Length = 380
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 163/352 (46%), Gaps = 8/352 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + KTE S K+++DA +G P S++ + + A L + S
Sbjct: 1 MSE---AEEKTEKASQKRLDDAKKDGKVPRSQDWTASLVLFAATALLWAASGSWGTEILS 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ V L+ ++ L + + + + + + ++ I S L+ V +
Sbjct: 58 RMVVGLSVSS---LHFRADWQRTILQEAAPLFVVFLMFGGVILVSAIASILLVGGWVWSP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + R+S G+KR ++ + VK L+G + + + +
Sbjct: 115 GKL-WEWDRLSWTSGLKRPFTKKGFSVLWEDSVKTGLLGVCMGLIVWGQKGVWFALLDIP 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + K + + +D + KMSKQ+IKDE K+ GNP
Sbjct: 174 PRRAISLGAAILVKDFFIFASLLLVPGAIDWFLQRRFFLESQKMSKQDIKDEHKEVDGNP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+R + + R R +MM++ +A++++ NP HYA+ALRY P++ AKG + IA
Sbjct: 234 LIKSRIRRLQRRIARMRMMKSVEKASVVLINPEHYAVALRY-TESMTVPIVTAKGIDTIA 292
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
K+R+IA H +PI E PS+ARSL+K I IP Y+AVA ++ I H
Sbjct: 293 LKIREIAKIHGVPILEAPSMARSLYKVCDIGDLIPAGLYEAVAIVLAYIDHL 344
>gi|261246628|emb|CBG24438.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
Length = 352
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 80/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|16760489|ref|NP_456106.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141751|ref|NP_805093.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413607|ref|YP_150682.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|168233617|ref|ZP_02658675.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168263746|ref|ZP_02685719.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463168|ref|ZP_02697099.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168822292|ref|ZP_02834292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194470706|ref|ZP_03076690.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197250158|ref|YP_002146621.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197362531|ref|YP_002142168.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|213426013|ref|ZP_03358763.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213613054|ref|ZP_03370880.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647290|ref|ZP_03377343.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289827203|ref|ZP_06545926.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25322219|pir||AF0696 probable type III secretion protein ssaU [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502785|emb|CAD01943.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137379|gb|AAO68942.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56127864|gb|AAV77370.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|194457070|gb|EDX45909.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195634165|gb|EDX52517.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094008|emb|CAR59504.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197213861|gb|ACH51258.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205332387|gb|EDZ19151.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205341285|gb|EDZ28049.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347621|gb|EDZ34252.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|320086100|emb|CBY95874.1| Secretion system apparatus protein ssaU [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 352
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 80/344 (23%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|283836566|ref|ZP_06356307.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
29220]
gi|291067495|gb|EFE05604.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
29220]
Length = 347
Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 155/340 (45%), Gaps = 3/340 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KT+AP+SKKI DA EG + E + + L+YL + ++ L +
Sbjct: 2 SGEKTQAPTSKKIRDAREEGQVAKTAELAAGVQLAVILMYLYLWGDDIWQDLSDLLLFTI 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + +I + + +YL Q + + + P
Sbjct: 62 DKMNDPLPIAFAGFISMFGKF---VFEDLIFLFAVLFFASMSAYLAQIGFLFSGKAMMPK 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ + + +K I+S+ +LV +K+ VK+ ++G++ ++ + + P +
Sbjct: 119 LDKLDVVKNLKNIFSVKSLVELLKNLVKMTIIGSVFYYLFCRYIPSLRNMVYIEPADAMQ 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + ++L ++ D + ++ L+MS +E+K E K+ G+ +K+ +
Sbjct: 179 VTLKIIFWLWGGLVLCYIVFSLADYAYQRYELMKNLRMSHEEVKQEYKEMEGSAEVKSHR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
KS+ + + +++ +I NPTH A+ + Y + PV+ AKG +LIA+ + I
Sbjct: 239 KSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDENITPLPVITAKGADLIARYIVDI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
A + +P+ E LAR L K++ I P F+ A+++++
Sbjct: 299 AEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAISEIL 338
>gi|238913175|ref|ZP_04657012.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 352
Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats.
Identities = 82/344 (23%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLVALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S+++LV KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSLVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLVCGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQASYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|290893976|ref|ZP_06556951.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J2-071]
gi|290556422|gb|EFD89961.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J2-071]
Length = 348
Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats.
Identities = 99/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +KS + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKSLLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|198243973|ref|YP_002215710.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197938489|gb|ACH75822.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|326623457|gb|EGE29802.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 352
Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats.
Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + +L S + +++ ++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHILIE---SLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|325917015|ref|ZP_08179254.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
gi|325536766|gb|EGD08523.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
Length = 357
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 84/343 (24%), Positives = 164/343 (47%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + +
Sbjct: 2 SDEKTEKPTEKKLQDARRDGEIPISPDVTAAAVLLAALLVMKLAGSYFVEHMNALVSIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + + L + + + L +P ++ + G+ +Q +L V P
Sbjct: 62 D--FTANTRDATALNRALARIGIQGALLTLPFVVACLAAGLIGTFLQTGLNASLKPVTPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+++++S+ +L+N +K +K ++G ++ L T++ I
Sbjct: 120 FDSLNPVNGVQKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPVPDIAQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + +L + D + + +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILSALAVLVFVLVGAADWSIQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A+ IPI P LAR+L V + A+P ++ VA ++ +
Sbjct: 300 AHNQGIPIVANPPLARALH-LVELGEAVPESLFETVAVVLRWV 341
>gi|315654597|ref|ZP_07907503.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
gi|315491061|gb|EFU80680.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
Length = 367
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 183/350 (52%), Gaps = 5/350 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
KTE + +K++ EG S++ + + S+ A L +
Sbjct: 2 SDSGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNAR---RQ 58
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHV 123
+ + T K+ S +V L + ++P +L ++ + +IQ V + H+
Sbjct: 59 TITAVTLTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGKGVFPSAKHL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M + +
Sbjct: 119 KPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHISLWN 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+P+IK
Sbjct: 179 LIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A ++
Sbjct: 239 SQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHVAARI 297
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K
Sbjct: 298 REVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347
>gi|22124447|ref|NP_667870.1| secretion system apparatus protein SsaU [Yersinia pestis KIM 10]
gi|45440283|ref|NP_991822.1| secretion system apparatus protein SsaU [Yersinia pestis biovar
Microtus str. 91001]
gi|167418837|ref|ZP_02310590.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|21957234|gb|AAM84121.1|AE013654_10 putative type III secretion system component [Yersinia pestis KIM
10]
gi|45435139|gb|AAS60699.1| putative type III secretion system component [Yersinia pestis
biovar Microtus str. 91001]
gi|166962831|gb|EDR58852.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
biovar Orientalis str. MG05-1020]
Length = 356
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 5 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 64
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 65 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 121
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ + K+++S+ ++ MKS +K+ ++ I L + + L
Sbjct: 122 RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF 181
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L ++ +++D + + +LKMS E+K E K S G+P IK +++
Sbjct: 182 STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ 241
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+T ++ NPTH+A+ L Y E P+++ KG + A + +A
Sbjct: 242 LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE 301
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E +LAR+L + V IP F++ VA L+
Sbjct: 302 QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALEL 345
>gi|167551609|ref|ZP_02345363.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168240935|ref|ZP_02665867.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194445677|ref|YP_002040673.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451297|ref|YP_002045425.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194404340|gb|ACF64562.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409601|gb|ACF69820.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205323578|gb|EDZ11417.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205339685|gb|EDZ26449.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 352
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + +L S + +++ ++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHVLIE---SLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|323143905|ref|ZP_08078567.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
YIT 12066]
gi|322416332|gb|EFY07004.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
YIT 12066]
Length = 348
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 76/347 (21%), Positives = 170/347 (48%), Gaps = 2/347 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ K++ DA +G+ S+E ++++A + + + + S +
Sbjct: 2 SGEKTEQPTDKRLRDAREQGDIAKSQEVVSAATVIAVVFFFIANADNIFKKLLSTTDYVF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+++ ++ ++ + +V+P + + + + L Q + P
Sbjct: 62 SNSITMPYDEALRLIGAAVIDC--SIGIVLPIVAAVLCAALVALLSQTGFLFAPKGAIPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ +S + K+++S+ NL+ F+K+ +K+ ++ + ++ ++ ++N S+
Sbjct: 120 LENLSPAKWFKQVFSVKNLIEFIKNIIKVTVLSVAVYMAAKNSFREFFKIQNSNIGSVWE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ + I ++ + L +D ++ ++ MS E+K E K+ G+P IK+++
Sbjct: 180 LSAVLLKDLAIYAIVAFSILAAIDFVYTKFKYTKDHMMSPDEVKQEYKEMEGDPQIKSKR 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + T +A ++ITNPTHYA+A+ Y + PV++AKGQ +A++M I
Sbjct: 240 RQLHQEMANQSTLANTRKAKVLITNPTHYAVAIDYEEGRTKLPVILAKGQGDLARRMIAI 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A E +IPI +P LAR+LF + +P VA+++ I +
Sbjct: 300 AKEEHIPIMRQPPLARALFAEGSEEQYVPSDLLVQVAEVLRFIDKMR 346
>gi|205352862|ref|YP_002226663.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857072|ref|YP_002243723.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205272643|emb|CAR37553.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206708875|emb|CAR33205.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|309243390|gb|ADO51966.1| SsaU [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|322714480|gb|EFZ06051.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|326627934|gb|EGE34277.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 352
Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|269303197|gb|ACZ33297.1| putative Yop translocation protein U [Chlamydophila pneumoniae
LPCoLN]
Length = 360
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + + L +L+
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A R D +F L + + +P L + G+ + P + KP
Sbjct: 62 QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P
Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K + I +F + VLD+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEIFYKAVTSIGIFFLIVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|304390233|ref|ZP_07372187.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326715|gb|EFL93959.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 367
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 183/350 (52%), Gaps = 5/350 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
KTE + +K++ EG S++ + + S+ A L +
Sbjct: 2 SDSGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNAR---RQ 58
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHV 123
+ + T K+ S +V L + ++P +L ++ + +IQ V + H+
Sbjct: 59 TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M + +
Sbjct: 119 KPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHISLWN 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+P+IK
Sbjct: 179 LIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMIK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A ++
Sbjct: 239 SQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHVAARI 297
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K
Sbjct: 298 REVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347
>gi|15618242|ref|NP_224527.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
gi|15835857|ref|NP_300381.1| type III secretion system protein [Chlamydophila pneumoniae J138]
gi|16752716|ref|NP_444983.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
gi|33241667|ref|NP_876608.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
gi|4376600|gb|AAD18471.1| Yop proteins translocation protein U [Chlamydophila pneumoniae
CWL029]
gi|6672052|dbj|BAA88663.1| Yop translocation protein U [Chlamydophila pneumoniae]
gi|7189359|gb|AAF38277.1| type III secretion inner membrane protein SctU [Chlamydophila
pneumoniae AR39]
gi|8978696|dbj|BAA98532.1| Yop translocation protein U [Chlamydophila pneumoniae J138]
gi|33236176|gb|AAP98265.1| YopU [Chlamydophila pneumoniae TW-183]
Length = 360
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + + L +L+
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A R D +F L + + +P L + G+ + P + KP
Sbjct: 62 QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P
Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K + I +F + +LD+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|15645389|ref|NP_207563.1| flagellar biosynthesis protein FlhB [Helicobacter pylori 26695]
gi|3023763|sp|P56416|FLHB_HELPY RecName: Full=Flagellar biosynthetic protein flhB
gi|2313898|gb|AAD07819.1| flagellar biosynthetic protein (flhB) [Helicobacter pylori 26695]
Length = 358
Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKNKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|315648120|ref|ZP_07901221.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
gi|315276766|gb|EFU40109.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
Length = 316
Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats.
Identities = 82/311 (26%), Positives = 157/311 (50%), Gaps = 1/311 (0%)
Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
LL F + + + +++ L + L+ P +
Sbjct: 3 LFFVLLIFGGYMRDHTVRLFTDVYINRLSMDVTK-DNVMQLFGEYGIQILLLLAPLFISI 61
Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
+ + S +Q +L +K F+++ +G K I+S+ +LV F+KS +K+ ++G ++
Sbjct: 62 FVIALISNYLQVGFMLTGEPLKMKFEKLDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLV 121
Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
+L + + P +I + + I + + L VLD + + + +
Sbjct: 122 YSTLWAAREGLSSLSTMGPDAIFHFVADITMSLGFKIAIGLIILAVLDYMYQRYDYEKNI 181
Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
+MSKQ+IKDE K+ G+P+IK + + R +MM+ A +IITNPTH+A+A++Y
Sbjct: 182 RMSKQDIKDEYKKMEGDPLIKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYD 241
Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ +AP ++AKGQ+ +A ++++IA EH I E LAR+L+++ I +IP ++AV
Sbjct: 242 GSMMEAPQIIAKGQDFMALRIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAV 301
Query: 343 AQLIYKIYHKK 353
A+++ +Y K
Sbjct: 302 AEVLAYVYKLK 312
>gi|194734066|ref|YP_002114435.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194709568|gb|ACF88789.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
Length = 352
Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLTHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|16802721|ref|NP_464206.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes EGD-e]
gi|46906930|ref|YP_013319.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
serotype 4b str. F2365]
gi|47091642|ref|ZP_00229438.1| flagellar biosynthetic protein flhB, putative [Listeria
monocytogenes str. 4b H7858]
gi|47095244|ref|ZP_00232855.1| flagellar biosynthetic protein flhB, putative [Listeria
monocytogenes str. 1/2a F6854]
gi|217965223|ref|YP_002350901.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|224498762|ref|ZP_03667111.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes Finland
1988]
gi|224502016|ref|ZP_03670323.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
R2-561]
gi|226223310|ref|YP_002757417.1| flagellar biosynthetic protein flhB [Listeria monocytogenes
Clip81459]
gi|254824041|ref|ZP_05229042.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J1-194]
gi|254829336|ref|ZP_05234023.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
N3-165]
gi|254830330|ref|ZP_05234985.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 10403S]
gi|254900085|ref|ZP_05260009.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes J0161]
gi|254911362|ref|ZP_05261374.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254932041|ref|ZP_05265400.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
HPB2262]
gi|254935689|ref|ZP_05267386.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
gi|254992440|ref|ZP_05274630.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J2-064]
gi|255521624|ref|ZP_05388861.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J1-175]
gi|284801009|ref|YP_003412874.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
08-5578]
gi|284994151|ref|YP_003415919.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
08-5923]
gi|16410068|emb|CAC98757.1| lmo0679 [Listeria monocytogenes EGD-e]
gi|46880196|gb|AAT03496.1| putative flagellar biosynthetic protein flhB [Listeria
monocytogenes serotype 4b str. F2365]
gi|47016315|gb|EAL07237.1| flagellar biosynthetic protein flhB, putative [Listeria
monocytogenes str. 1/2a F6854]
gi|47019961|gb|EAL10698.1| flagellar biosynthetic protein flhB, putative [Listeria
monocytogenes str. 4b H7858]
gi|217334493|gb|ACK40287.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|225875772|emb|CAS04475.1| Putative flagellar biosynthetic protein flhB [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258601748|gb|EEW15073.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
N3-165]
gi|258608271|gb|EEW20879.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
gi|284056571|gb|ADB67512.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
08-5578]
gi|284059618|gb|ADB70557.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
08-5923]
gi|293583594|gb|EFF95626.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
HPB2262]
gi|293589298|gb|EFF97632.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293593270|gb|EFG01031.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J1-194]
gi|307570218|emb|CAR83397.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
gi|328467248|gb|EGF38328.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 1816]
gi|328475644|gb|EGF46393.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 220]
gi|332311104|gb|EGJ24199.1| Flagellar biosynthesis protein [Listeria monocytogenes str. Scott
A]
Length = 348
Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|15611774|ref|NP_223425.1| flagellar biosynthesis protein FlhB [Helicobacter pylori J99]
gi|12230110|sp|Q9ZL73|FLHB_HELPJ RecName: Full=Flagellar biosynthetic protein flhB
gi|4155273|gb|AAD06292.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ +++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKILDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ ++ +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKSNVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|317014180|gb|ADU81616.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
Gambia94/24]
Length = 358
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|330444474|ref|YP_004377460.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
E58]
gi|328807584|gb|AEB41757.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
E58]
Length = 359
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 82/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + S + L L
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMSMAFYLSSFFYQHLGGFLVSTLT 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + +P L+ + G+ + PV + KP
Sbjct: 62 QA--PINHDPRLALYYLKNCLTLILAASLPLLVSVGIIGLIVGFLIVGPVFSTEVFKPDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E IK+ + + L+ +KS KI I+ + L +++ P
Sbjct: 120 KKFNPIENIKQKFKVKTLIELLKSVFKIFGAALILYVVLKNRVPLIIETAGVAPIVTAQI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
K + I +F + VLD+ + H + +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQIFYKAVTSIGIFFVVVAVLDLVYQRHNFSKELKMEKFEVKQEFKDTEGNPEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDPSSQIKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILAEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|94968667|ref|YP_590715.1| type III secretion exporter [Candidatus Koribacter versatilis
Ellin345]
gi|94550717|gb|ABF40641.1| type III secretion exporter [Candidatus Koribacter versatilis
Ellin345]
Length = 351
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 96/351 (27%), Positives = 172/351 (49%), Gaps = 8/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ +KTE P+ ++ + A +G SRE +I+ L+++L S +++
Sbjct: 1 MADS----SKTEQPTQQRRKKAREKGQVARSRELPGALTIIVVLVWILSLNSVALFTWRG 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL A L++++ LL A++ + +L S L+Q V +
Sbjct: 57 FYRSLLQQA---ALQELTLSPALLQKTIWVAAQWTVVPMLGAFAIATASTLLQGGFVFSS 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +R+S +K+I+S L N +KS + + + + + T +
Sbjct: 114 EALAWKPERLSPGHRLKQIFSAAGLSNTLKSLLPFAAILWLAVSQIRSEWVTFIRLGGLP 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
I ++ L + + LD + LKMS++EIK E K+S GNP
Sbjct: 174 VARIGSWLLAQCVALVWKCCLVLLLWSALDYLLQRQRLEGDLKMSREEIKQEFKESEGNP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + R R +M+ A AT+++TNPTHYALAL Y APVLVAKG + +A
Sbjct: 234 QVKAKIRRMQRQVRRQQMLHAVKAATVVVTNPTHYALALEYRPD-FAAPVLVAKGLDRLA 292
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++++++A H IP+ E +LA +L++ V + AIP + AVA+++ +Y
Sbjct: 293 EEIKQVAIWHEIPLVENRALAHALYRSVEVGQAIPSKLFTAVAEVLAAVYR 343
>gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3]
gi|62148142|emb|CAH63899.1| putative membrane transport protein [Chlamydophila abortus S26/3]
Length = 360
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 148/345 (42%), Gaps = 2/345 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + K++ DA +G S++ + + + + S + S L +
Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
A D ++ L + +P L GI + P + KP
Sbjct: 62 EA--PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I
Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ K + I +F + VLD+ + + +LKM K E+K E K + GN IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEIKGRRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
IA+ A+ +++NP A+A+ YI + AP ++A G NL AK++ A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKRIITEA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++ IPI LA L+ + IP Y+A+ +++ I
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344
>gi|325527806|gb|EGD05073.1| flagellar biosynthesis protein FlhB [Burkholderia sp. TJI49]
Length = 308
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 80/262 (30%), Positives = 143/262 (54%)
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
++P L L + + + + +++ + F R++ G+ RI+SI + S
Sbjct: 2 FAALLPILALTGLAALLAPMALGGWLISQKTFELKFDRLNPISGLGRIFSIQGPIQLGMS 61
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
K ++VG I I++ + +L + + L A V + + + LD+
Sbjct: 62 IAKTLVVGGIGGIAIWRSKDELLGLATQPLDAALVDALHLVAVCCGTTVAGMLVVAGLDV 121
Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
+ Q+ KL+M+K+E+K E +++ G+P +K R + R+ R +MM A +A +++TN
Sbjct: 122 PYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTN 181
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH+A+AL+Y E AP +VAKG NL+A ++R++A EHN+P+ E P LAR+L+ V +
Sbjct: 182 PTHFAVALQYTDGEMRAPKVVAKGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELE 241
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
IP Y AVA+++ +Y K
Sbjct: 242 REIPGSLYAAVAEVLAWVYQLK 263
>gi|149203120|ref|ZP_01880091.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
gi|149143666|gb|EDM31702.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
Length = 362
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 2/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + +KT + K+++A +G S + + + L+ L + +V +
Sbjct: 1 MAEQNDDSDKTLEATQHKLDEARKKGEFARSADLNTVGTYAGLLLALSLASGTPVETVGA 60
Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+L L+ + Q + L ++ + LLL M+ + + + QR V+
Sbjct: 61 NLMTLVEHSDQLAKLIFQGGLGASALGGIAAQIVFGLSLFLLLPMVMALAAVIAQRAFVV 120
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++P R++ E K + L F KSF K+ L ++ LT M+ +
Sbjct: 121 APTKIEPRVSRINPVENAKNKFGATGLFEFAKSFGKLFLYSLLLGGFLTYRLPEMMSTLH 180
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
A I + + +I++LL + LD W Y + +MS ++++DE+KQ+ G
Sbjct: 181 AEAPIIGAVMGKLIIEFMIIVLLISLAIGGLDYLWQYFDHLRRQRMSHKDLRDELKQNDG 240
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P +K +++ A +MM A ++I NPTH+A+AL++ + AP VAKG +
Sbjct: 241 DPAVKQQRRRRAMELASGRMMADVPTADVVIVNPTHFAVALKWSRKPGAAPTCVAKGMDH 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
IA +R +A E +PI E+ AR+L I I P Y AVA I
Sbjct: 301 IALAIRDLARESGVPILEDAPTARALHATTEIGREIDPAHYAAVAVAIRF 350
>gi|213854181|ref|ZP_03382713.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 352
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + ++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFL---GAEVIVATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|46200838|ref|ZP_00207865.1| COG1377: Flagellar biosynthesis pathway, component FlhB
[Magnetospirillum magnetotacticum MS-1]
Length = 324
Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 98/318 (30%), Positives = 180/318 (56%), Gaps = 1/318 (0%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
+++S++ L+ + F + L + +E S + LL+ +++ +++
Sbjct: 3 MWASLVGALVIITLFAPYMARDMGRLLLPFIEHPHAFPMEQ-SDVGNLLSMITMDMLKIL 61
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
+ +++ ++ + S + Q + + + F ++S +GI RI+S NLV F KS K+
Sbjct: 62 VLPMMMLVVLALVSAMGQSGLMFLPDKLTMDFSKLSPMKGITRIFSGRNLVEFAKSLFKV 121
Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
+G +I + L + + + ++L + V ++++++L + L D +
Sbjct: 122 SAIGFVIFLVLKSHMSEYAGLAALDLMAVLDYMRHQVIAMIMIVVLMVFVLAAADWFYQR 181
Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
+ ++KM+KQEIKDE KQ+ G+P+IK R +++ R R +MM A +A++++TNPTHY
Sbjct: 182 WAFNQQMKMTKQEIKDEHKQTEGDPMIKGRLRALRMQRARQRMMAAVPKASVVVTNPTHY 241
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y Q APVLVAKG +LIAK++R +A E+ +PI E P LAR+L+ V ++ IP
Sbjct: 242 AVALQYDQDSMGAPVLVAKGVDLIAKRIRDLATENEVPIVENPPLARALYATVELDEEIP 301
Query: 336 PVFYKAVAQLIYKIYHKK 353
P YK VA++I + K
Sbjct: 302 PEHYKTVAEIIGYVMKLK 319
>gi|33596846|ref|NP_884489.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33600620|ref|NP_888180.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568219|emb|CAE32132.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33573547|emb|CAE37538.1| putative type III secretion protein [Bordetella parapertussis]
Length = 349
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ K++ D+ +G SR+ + + I A + L + S+ + +
Sbjct: 2 SGEKTEQPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A A Q + + LT + A R++ P +L+ + G+ + +Q VL +KPS
Sbjct: 62 AFADQAFAVALGPV---LTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ ++ + +
Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ ++ I L +++ D+ W +Q+ L+MSK E+K E K+ G+P IK ++
Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A M +
Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A + +P+ + +LAR+L Q ++ IP + VA ++ +
Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343
>gi|304312007|ref|YP_003811605.1| Translocation protein in type III secretion [gamma proteobacterium
HdN1]
gi|301797740|emb|CBL45962.1| Translocation protein in type III secretion [gamma proteobacterium
HdN1]
Length = 358
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 184/348 (52%), Gaps = 5/348 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + TE P+ K+IEDA +GN S++ + ++ I LL P ++
Sbjct: 1 MAEKQSDQ--TELPTPKRIEDARRDGNVSRSQDLGK-TLLIPVWIGLLGGLLPVLFQ--R 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+H + + ++++ ++ + + +++P + G+ +Q VL L
Sbjct: 56 WIHYVRTTWQNLPPDNLNGLLDAMMSGAGVFLAILLPLIFFAAAIGVFIEFVQVGKVLAL 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP R++ G+KR++S N V KS K L+ + I L + L +
Sbjct: 116 KPVKPDLNRLNPAAGLKRMFSQRNFVELAKSVGKSSLIILLSMIVLRDQLGDTLKLPYGS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + T+R +LI + + + +D+ + + W L MS+++I+ E K S G+P
Sbjct: 176 HETLFAVLWLTLRAMLISVTIAFLLIAAMDVAYQKYAWTKDLMMSRRDIQQEHKNSEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K +++++ + + M + A++++TNPTHYA+A+ Y + + D P++VAKG++ A
Sbjct: 236 MLKGQRRALHQEWSQENAMGSVRGASVVVTNPTHYAVAIHYEKGKTDLPLVVAKGEDYFA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ +R+ A E +PI E LAR+L++ + +++ I F++AVAQL++
Sbjct: 296 RMIREAAQEAGVPIMENVDLARALYRDIDVHNPITSEFFEAVAQLLHW 343
>gi|62180013|ref|YP_216430.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62127646|gb|AAX65349.1| Secretion system apparatus SsaU [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 352
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T L
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ IP+ E LARSLF +V IP ++ VA L+ +
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 343
>gi|332701286|ref|ZP_08421374.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
Walvis Bay]
gi|332551435|gb|EGJ48479.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
Walvis Bay]
Length = 357
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 99/351 (28%), Positives = 181/351 (51%), Gaps = 3/351 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +KTE+ ++K+ + + +EGN P S+E S + IL L+ L + S
Sbjct: 3 QSDPSKTESATAKRRKKSRDEGNVPRSQELSKLAVILVGLLVLRLLIGFIGDEMKSLFAS 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L++ +L + L L++ +++++P L + IQ + K
Sbjct: 63 FLSNWGNLELTT-EGLYILFVDLAVHLAKMLLPVLFSLALAAFVINRIQVGQLWTTKVFK 121
Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
P ++ ++ GIKR I++++ V +S + V I L +L S
Sbjct: 122 PKMEKFVNIVGGIKRLIFNVDAFVRLARSILGAAAVAIGPIILLRHEMNNLLPLFSQTTE 181
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I + K+++ L+ + T+ V+D ++ + KLKM+K E+KDE KQ+ G+P I
Sbjct: 182 GIAVYMLTVSYKMVLYSLIPMITVAVIDTVYTRWDYEEKLKMTKDEVKDERKQAEGDPKI 241
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
+ RQK + +M+ +A +++TNPTH+A+AL Y ++ AP++VAKG + +AK+
Sbjct: 242 RQRQKQKMMAMSMSRMLHNVPKADVVVTNPTHFAVALSYDLSKAPAPLVVAKGADHMAKR 301
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E +PI E LAR+L+ QV + IP YKAVA ++ +++ +
Sbjct: 302 IREMAREAGVPIRENKPLARALYDQVEVGDIIPEDLYKAVATILARLHKFR 352
>gi|254779257|ref|YP_003057362.1| flagellar biosynthesis protein FlhB [Helicobacter pylori B38]
gi|254001168|emb|CAX29127.1| Flagellar biosynthesis and export/adhesin [Helicobacter pylori B38]
Length = 358
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLTKDTFLLLLPILIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|308184555|ref|YP_003928688.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
gi|308060475|gb|ADO02371.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
Length = 358
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPLLIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|315452646|ref|YP_004072916.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
gi|315131698|emb|CBY82326.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
Length = 352
Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 171/349 (48%), Gaps = 7/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKIE A EGN S E F ++A ++ FFS + S
Sbjct: 1 MAE----EEKTELPSAKKIEKAREEGNVAKSLEVVGFLGLVAGFGGVMAFFSMWLDHFES 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L ++ L L + +++P L L + + ++Q + +
Sbjct: 57 IFRQSLRWIALD--FTPHNLHLLSLQLLKDVAWVLLPFLFLMFVVAFLANVVQFGLLFSP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P F +++ G+K ++S+ L++ + K+ + + + ++ +
Sbjct: 115 KAIVPKFSKINPINGLKNLFSLKKLLDGLLITAKVCIAFVLGFVVVSLFIGELAKIARVE 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ +L ++LD Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 IRDQALWFEHKALILIASLLFLFLVASLLDFLLKRRQYINSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + K + KMM A A +++TNPTHYA+ALR+ ++ APV+VAKG +A
Sbjct: 235 EIKAKIKQLMLKNSMSKMMAAIPSANVVVTNPTHYAVALRFE-EKDVAPVVVAKGIEHLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+++ IA EH I I E P LAR L+K+V ++ IP + ++AVA + ++
Sbjct: 294 IRIKAIAREHEIEIIENPKLARELYKEVDVDEVIPKMLFEAVAIVFAQV 342
>gi|162147444|ref|YP_001601905.1| flagellar biosynthetic protein flhB [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545554|ref|YP_002277783.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
5]
gi|161786021|emb|CAP55603.1| putative flagellar biosynthetic protein flhB [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533231|gb|ACI53168.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
5]
Length = 358
Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E K++ P+ K++E A EGN SRE + + + L+ + +
Sbjct: 1 MAEGSGGGEKSQDPTGKRLETAREEGNVAQSRELLMLAILGGFLLVFTMATADSARRFVA 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + D++ I + +L L P + + I ++Q +
Sbjct: 61 HVGGTMEHFDSIP-TDMTSIYRIAVQTALEGVLLAAPLVFTGFVVTIACGMLQTGFLYRP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R+S G++R++ + N+V +KS K ++ G ++ + +
Sbjct: 120 QAILPDITRLSPMRGLQRMFGMTNVVEMLKSLTKFVVFGVVLYAVAKGTLHVAPEAERWS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ ++++LL + +LD W+ + L+MS Q+IKDE +Q+ G+P
Sbjct: 180 MLRLVSELSSWFAYAVLVVLLVQCVIAILDDLWTRYHRIVGLRMSFQDIKDEFRQTEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R K + R R R +M++A AT++ITNPTHYA+AL Y + AP +VA G + +A
Sbjct: 240 KVKGRLKQMRRRRARRRMLQAVKTATVVITNPTHYAVALSYESGADSAPKIVASGTDELA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R A + +P+ P LAR+L +P++S IP +++ VA +I + K
Sbjct: 300 ARIRHAAEDAKVPVVANPPLARALHA-LPLDSEIPSEYFQPVAAIIAYVMKLK 351
>gi|82543640|ref|YP_407587.1| flagellar biosynthesis protein FlhB [Shigella boydii Sb227]
gi|81245051|gb|ABB65759.1| putative part of export apparatus for flagellar proteins [Shigella
boydii Sb227]
Length = 343
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 87/312 (27%), Positives = 165/312 (52%), Gaps = 1/312 (0%)
Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL 101
+ + F ++ L L ++D + I+ + L A ++P +
Sbjct: 1 MGVCVIWFGGVSLARRLSGMLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISG 59
Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++
Sbjct: 60 VVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSV 119
Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
L ++ M+ ++ +P + + +A V ++++L + + D+ + K
Sbjct: 120 TGFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKK 179
Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
L+MS+Q+I+DE KQS G P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y
Sbjct: 180 LRMSRQDIRDEFKQSEGEPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQY 239
Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
+ + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y A
Sbjct: 240 DENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAA 299
Query: 342 VAQLIYKIYHKK 353
VA+++ I+ K
Sbjct: 300 VAEVLAWIWQLK 311
>gi|327394193|dbj|BAK11615.1| flagellar biosynthetic protein FlhB [Pantoea ananatis AJ13355]
Length = 346
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 166/315 (52%), Gaps = 1/315 (0%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
+LA ++ L + + + + + L + D I+ + +L + A ++P
Sbjct: 1 MLLAGIMILWVGGAMMAHRLAAMVSTGLR-FDHAMVTDDKIIIAHVGNLIMQAIAALLPL 59
Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
L ++ I S ++ V++ +K F +++ G+KR+++ K +K ILV
Sbjct: 60 LGGLVLVAIASPMLLGGVVISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILV 119
Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
G + + ++ ML I+ +P + L H + +++L + + D+ W +
Sbjct: 120 GCVAGWYVWSHWPDMLRLIAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSH 179
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
+ KL+MS+QEI+DE KQ G+P +K R + R+ R +MM +A +I+TNPTHY++A
Sbjct: 180 FKKLRMSRQEIRDEHKQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVA 239
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
L+Y + + AP ++AKG IA ++R++ EH IP+ E P LAR+L++ I IP
Sbjct: 240 LQYNEKKMSAPKVIAKGAGDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGAL 299
Query: 339 YKAVAQLIYKIYHKK 353
Y AVA+++ ++ +
Sbjct: 300 YGAVAEVLAWVWQLR 314
>gi|307637461|gb|ADN79911.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
gi|325996051|gb|ADZ51456.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
gi|325997646|gb|ADZ49854.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
Length = 358
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSVFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|210134972|ref|YP_002301411.1| flagellar biosynthesis protein FlhB [Helicobacter pylori P12]
gi|210132940|gb|ACJ07931.1| flagellar biosynthetic protein [Helicobacter pylori P12]
Length = 358
Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L+K V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYKDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|238899254|ref|YP_002924937.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229467015|gb|ACQ68789.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 352
Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K+I+++ +G S E + + + LIY + + + +
Sbjct: 3 EKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGPNLVNLMGLLITSSIKK 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + + + L ++ GL L + + S Q P+L + + +
Sbjct: 63 LDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMS---QVGPLLAIKAIGFKGQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K + S+ +L KS K+ILV I L E T H
Sbjct: 120 HINPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREYAPTFGYLSYCGTHCAFPIF 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ +L +L +LD + ++ K+KMS++EIK E K + G+P IK++++
Sbjct: 180 GTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + +T +I NPTH+A+ L Y E P+++ KG+ A+ + K+A
Sbjct: 240 LQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++P+ E LA+ L +V + IP ++ VA ++ + + +
Sbjct: 300 KFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAILRFVLNLE 344
>gi|33593237|ref|NP_880881.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|29603237|emb|CAC79582.1| bscU [Bordetella pertussis Tohama I]
gi|33563612|emb|CAE42513.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382646|gb|AEE67493.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 349
Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ K++ D+ +G SR+ + + I A + L + S+ + +
Sbjct: 2 SGEKTERPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A A Q + + LT + A R++ P +L+ + G+ + +Q VL +KPS
Sbjct: 62 AFADQGFAVALGPV---LTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ ++ + +
Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ ++ I L +++ D+ W +Q+ L+MSK E+K E K+ G+P IK ++
Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A M +
Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A + +P+ + +LAR+L Q ++ IP + VA ++ +
Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343
>gi|282891999|ref|ZP_06300476.1| type III secretion inner membrane protein SctU [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281498041|gb|EFB40383.1| type III secretion inner membrane protein SctU [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 356
Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 83/346 (23%), Positives = 159/346 (45%), Gaps = 3/346 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK+ DA N+G S++ + + + L + S +
Sbjct: 2 GEKTEKATPKKLRDARNKGQVAKSQDLPSAFTFIVSIWVTLAASKFLFDHLGSFTVMTFH 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L+ + I L IP L + + G+ + P+ L K
Sbjct: 62 QIAKGSLD--TAIPDLYIQGLTEIFITSIPILGMVSVIGVLINFLVVGPMFALEVFKFDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ +K + + LV +KS +KI + I+ + ++ ++ +S + L
Sbjct: 120 KKFDPISNLKSKFKLKTLVELLKSVLKISIACYIVYDVMWKSLPVLIRAVSLPIDASLMV 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + +V+I + LF + V D + + S++KM K E+K E K S G+P IK+++K
Sbjct: 180 FYAFLMEVVIKVGLFFIIIAVADFIYQKKTFASEMKMEKFEVKQEYKNSEGDPQIKSKRK 239
Query: 248 SIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
IA+ + RA ++TNPTH A+A+ Y + + AP ++AKG++ +A+++ K
Sbjct: 240 QIAQEIAYQEGPRGGVKRAQAVVTNPTHLAIAIGYKKDYDAAPFVLAKGEDALAERIIKY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A E N+P+ LA L+++ + +P Y+ +A+++ I
Sbjct: 300 AEEFNVPVVRNIKLAHKLWEEADVYEFVPEDTYELIAEILRWISSL 345
>gi|300764490|ref|ZP_07074483.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
N1-017]
gi|300514844|gb|EFK41898.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
N1-017]
Length = 348
Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDEVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|300722693|ref|YP_003711983.1| putative flagellar export protein [Xenorhabdus nematophila ATCC
19061]
gi|297629200|emb|CBJ89797.1| putative part of export apparatus for flagellar proteins
[Xenorhabdus nematophila ATCC 19061]
Length = 339
Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats.
Identities = 84/307 (27%), Positives = 154/307 (50%)
Query: 47 LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
+L+ I S + + + + ++ + L A ++P ++
Sbjct: 1 MLWMSGQSITHELSLMVFEGFNFDHNMVSNDKQMLQQVGRLLKQAVWALLPVFAGLVLIA 60
Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
+ + + + + +K +++ G+K+I+S+N L K+ +K LVG + +
Sbjct: 61 LSAPALMGGLLFSSKSIKFDLTKLNPISGLKKIFSMNALAELFKAILKASLVGGGAALFI 120
Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
N+ ML+ I+ P L A + +IL + + D+ + KL+M++
Sbjct: 121 WLNWPAMLNLIAQPPLMALNDAVLMMIFASYIILFMLIPMVAFDVLYQIRSHLKKLRMTR 180
Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
QEIKDE K+ G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +
Sbjct: 181 QEIKDEFKEQEGDPHVKARIRQQQRAAARKRMMADVPKADVIVTNPTHYAVALQYDSKKM 240
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
AP ++AKG LIA +++++ E+ IP+ E P LAR+LF+ + IP Y AVA+++
Sbjct: 241 SAPKVLAKGAGLIALRIKEMGAENRIPLLEAPPLARALFRYAEVGGFIPAALYAAVAEVL 300
Query: 347 YKIYHKK 353
+Y K
Sbjct: 301 AWVYQLK 307
>gi|225181592|ref|ZP_03735033.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
gi|225167700|gb|EEG76510.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
Length = 309
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 1/308 (0%)
Query: 46 YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
L +++ + + R L ++ L + P + ++
Sbjct: 3 ALFMAVGQFLFNHLAQTMLRFLQMDGRLL-TPGNLNALTMRAFGDFFLFMAPVFAVSLIA 61
Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
G+ +Q + + P F R++ EG K+I S L KS +K+++VG + +
Sbjct: 62 GLAVNYLQVGFLFTTEPLNPQFNRLNPAEGFKKIASKRALFELAKSLLKVLMVGFVAFLF 121
Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
+ N +L + + + + + I L+VLD + ++ LKMS
Sbjct: 122 VRGNLENLLATLYQDAAGVWETLRSLSLNLALRIGALFLVLSVLDYIYQRYEHNQNLKMS 181
Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
KQEIK+E KQ G+P +K++ + RS +MM+ AT++ITNPT A+A+RY +
Sbjct: 182 KQEIKEEHKQMEGDPQLKSQLRERQRSIATQRMMQDVPEATVVITNPTELAVAIRYREDR 241
Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
++AP +VAKG L+AK++R+ A E+N+PI E +AR L+ QV I IP Y+AVA++
Sbjct: 242 DEAPTVVAKGAALMAKRIRETAKENNVPIMENKPVARMLYDQVEIGQEIPVDLYQAVAEI 301
Query: 346 IYKIYHKK 353
+ +Y +
Sbjct: 302 LALVYKLR 309
>gi|213581364|ref|ZP_03363190.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 338
Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats.
Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ IP+ E LARSLF +V IP ++ VA L+
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLR 338
>gi|74101643|gb|AAZ99733.1| FlhBL [Aeromonas hydrophila]
Length = 378
Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+N + +KTE SS+K+ A EG S+E S +L + + + P +
Sbjct: 1 MSQN-SAQDKTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + D ++ LS +++P + + ++ VL
Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ PS ++++ +G+KR++S ++L+ +KS +KI+L+G+ + + L + ++
Sbjct: 119 KKLLPSAEKLNPLKGLKRMFSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + A + + I++ + VLD+ + +L+M+KQE+KDE K S G P
Sbjct: 179 PQAAMEQALRILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R ++ + +A +II NPTHYA+A++Y +AP ++AKG + +A
Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNPTHYAVAIKYDPERANAPYVIAKGVDGMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R++A +H+ + P L R+++ ++ +P Y AVA ++ + +
Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351
>gi|268316329|ref|YP_003290048.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
gi|262333863|gb|ACY47660.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
Length = 360
Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats.
Identities = 102/349 (29%), Positives = 177/349 (50%), Gaps = 2/349 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
D K P+ ++++ A EGN S+E S +L L+ L +
Sbjct: 3 DRDQKQFDPTPRRLQKAREEGNVFRSQETSAVLLLLGGLLTLALSLPYAYGLMRQFTART 62
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L SA L ++ L + RL++P L ++ G + Q L + P
Sbjct: 63 LMSAPFYPLTS-GSVIGALQEALMVLGRLLVPFFALLLVIAFGVNVWQTGWHPTLKPLLP 121
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+R+S G++R++S L N +K+ +KI +VG I + + + +L+ + + +IL
Sbjct: 122 KPERISPLRGLQRLFSSRGLFNVLKALLKIAIVGPIAFLVIYRHLPEILELHTHSLEAIL 181
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ ++ L + L+ D + ++ LKM+ QE+KDE +++ G+P++K+R
Sbjct: 182 QATGLWMLQLAAYTLGALLLLSAADFAYEKWKYRQDLKMTAQEVKDEHRETEGDPMVKSR 241
Query: 246 Q-KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+ K R ++ A R+ ++ITNPTHYA+ALRY +E AP ++AKG A ++R
Sbjct: 242 RLKKARELARRRRLDHAVLRSDVVITNPTHYAVALRYDPSEAPAPRVLAKGIRKRALRIR 301
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A EH IP+ E+P LAR+L+ VP IP Y AVA ++ +IY ++
Sbjct: 302 ALALEHGIPVVEDPPLARALYHNVPEEQEIPEELYLAVATILAEIYRQR 350
>gi|89056679|ref|YP_512130.1| flagellar biosynthesis protein FlhB [Jannaschia sp. CCS1]
gi|88866228|gb|ABD57105.1| flagellar biosynthetic protein FlhB [Jannaschia sp. CCS1]
Length = 362
Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats.
Identities = 94/355 (26%), Positives = 166/355 (46%), Gaps = 12/355 (3%)
Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
MS++D +P +K + KK+EDA +G S++ + L+ + ++
Sbjct: 1 MSDDDTSPGDKPFDATPKKLEDARKKGEIVRSQDLNTAVMYAGFLLSGAILAPWLVQNLG 60
Query: 60 SDLHVLLASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
L A D I L L SA+ +++P LL + S L Q
Sbjct: 61 QLTQTTLGQAEVIAPLMLGPGGDGPAIGLLSGSLIASAAIVLVPAGLLLI-----SLLAQ 115
Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
R + + + P R+S K+ Y L F KS VK+ LV + I L T+
Sbjct: 116 RALLFTPSKLMPKLNRLSPISNAKQKYGSQGLFQFAKSAVKLALVSIFLAIYLWARAETI 175
Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
L + +L L+++ + ++D W + Q + +M++QE+ DE
Sbjct: 176 LASLYGTAGQLLELLGRLSLDFLMVVAGMTGIIGIIDWFWEWSQLQLRNRMTRQEVMDES 235
Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
K + G+P IK ++++ + ++M+ A +++ NPTHYA+AL++ + P+ VA
Sbjct: 236 KSAEGDPHIKQQRRARGQGIAMNQMLGDVPNADVVVVNPTHYAVALKWDRAGGGVPICVA 295
Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
KG + +A+++R+ A E +PIF +P AR+L + + +AI P Y+AVA I
Sbjct: 296 KGVDDVARRIREAASEAAVPIFSDPPTARALHASIEVGAAIQPDQYRAVAAAIRF 350
>gi|308062091|gb|ADO03979.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Cuz20]
Length = 358
Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA LI + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLISIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|94986993|ref|YP_594926.1| translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731242|emb|CAJ54605.1| translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 360
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 80/347 (23%), Positives = 168/347 (48%), Gaps = 3/347 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+KTE P+ KK+ +A +G+ S++ + ++ +Y + + ++ + L L
Sbjct: 4 DSGDKTEPPTPKKLREAREQGDVAKSQDVAAAMTMFGASLYFIGMWQDVFSNLLN-LIEL 62
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
E+ + ++ ++ A ++IP + M + + L+Q + ++ P
Sbjct: 63 PTKFIHLPFEE--ALPATISGIASIAFSILIPIIATLMFLAVAADLMQIGVLFSVKSAIP 120
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
++ ++ +++SI NL F+K+ +K+ ++ + I L+ + S N S+
Sbjct: 121 KLDNLNPKKWFSKVFSIKNLGEFVKNILKVSVLTITVWIILSNYIKELFAIASGNIWSLW 180
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
Y +R + + + + + + +D + Q+ + MSKQEIK E K G+P+IK +
Sbjct: 181 YILGSVLRDLTLSVSMVFSVIACIDFMFQKWQYNKRQMMSKQEIKQEYKDMEGDPLIKGK 240
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+K + + + +A +++ NP HYA+A+ Y + PV++AKG+ L+A++M
Sbjct: 241 RKQLHQEMAMQNPVNKVRKAKVVVVNPIHYAIAIDYEKGRTLLPVILAKGEGLLAQRMVA 300
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+A E IP+ + LA SLF +S IP VA+++ +
Sbjct: 301 VAQEEGIPVMQNIPLAHSLFMDGIEDSYIPRNLIAPVAEVLRWVNSL 347
>gi|149200776|ref|ZP_01877751.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
gi|149145109|gb|EDM33135.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
Length = 384
Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 81/357 (22%), Positives = 154/357 (43%), Gaps = 7/357 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D KTE P+ K+ ++A EG S E + ++ + L + +
Sbjct: 1 MADADDGQEKTEEPTQKRRQEAREEGRITTSTEVFVLVTLGMGALILSA-GQWALPGLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + L+ + ++ + L L + + +
Sbjct: 60 LWATGLVIDGAQSLD--AMMIGHTRDMMLWMLAAGPGLGLPLLAAVLMAQSAMGGLNFAP 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++++ G+ R+ S+ LV+ +K+ +K+ L+ + L + +
Sbjct: 118 KALGFKPEKMNPMTGLGRMVSMKALVDLLKAVLKVTLLLAAGVLMLYPLLPALGSSSALA 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +VL +LL + + LD+GW H ++MS+Q+IKDE K+S G+P
Sbjct: 178 PGDAMVLFGTAMLRVLGGLLLGLVVIAALDLGWQIHSNTKSMRMSRQDIKDESKESEGSP 237
Query: 241 IIKNRQKSIARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
K + R K + AT IITNPTH+A+ALRY + AP ++A G+
Sbjct: 238 EQKGAMRRRQMQASRRASERKALADVPMATAIITNPTHFAIALRYEPGTDTAPRILAMGK 297
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A+ + + + + P LAR+L+ I IP V + AVA ++ ++ +
Sbjct: 298 GPMAQAVIRRGRRAGVTTLQVPPLARALYFTGAIGREIPDVLFAAVAVILAHVWRLE 354
>gi|74311773|ref|YP_310192.1| flagellar biosynthesis protein FlhB [Shigella sonnei Ss046]
gi|73855250|gb|AAZ87957.1| putative part of export apparatus for flagellar proteins [Shigella
sonnei Ss046]
Length = 323
Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 83/283 (29%), Positives = 157/283 (55%)
Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
D + I+ + L A ++P + ++ + S ++ V + ++P F ++
Sbjct: 9 HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 68
Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
+ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A
Sbjct: 69 NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 128
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + +
Sbjct: 129 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 188
Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+
Sbjct: 189 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 248
Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 249 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 291
>gi|103488400|ref|YP_617961.1| flagellar biosynthesis protein FlhB [Sphingopyxis alaskensis
RB2256]
gi|98978477|gb|ABF54628.1| type III secretion exporter [Sphingopyxis alaskensis RB2256]
Length = 379
Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE P++KK D+ EG+ +SRE + +LA +++ + S
Sbjct: 1 MAEGPDKDQKTEQPTAKKRADSTREGDVLMSRELATALMMLAAAGWIVAAGGWFVQSAGD 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + T + D + L+ + + L + + +
Sbjct: 61 LVRRGL-TLTAADVADFAPGEALMRN-GAEILLPLTSLFALALGAAVAGPAMLGSMGWRG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ R++ G+KR++ + K+ K+IL+G I + + ++ ++
Sbjct: 119 KALHFKGNRINPMSGLKRMFGMQGATELGKAIAKVILLGGIGYWLVARSLPAIMSMAGSD 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + A + ++ + + + ++D+ + Q +L MSK EIKDE++QS G P
Sbjct: 179 LIAAIGLAGKAIGHAMLALAGGLVVIALIDVPVQWFQRNKRLMMSKHEIKDEMRQSDGAP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K Q+ A + +A S AT+++TNPTH+++ALRY + APV+VA+G+ +A
Sbjct: 239 ELKQAQRQRAHEILSGSARKAVSEATVVLTNPTHFSVALRYRPGTDAAPVVVARGRGDVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A N+P+ E P L R+++ IP + AVA ++ ++ +
Sbjct: 299 LSIRELARAANVPMLEYPQLTRAIYFTARAGRTIPEELFVAVATVLAFVFQLE 351
>gi|298736474|ref|YP_003729000.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
gi|298355664|emb|CBI66536.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
Length = 358
Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|108563180|ref|YP_627496.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPAG1]
gi|107836953|gb|ABF84822.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
Length = 358
Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLVKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|261837998|gb|ACX97764.1| flagellar biosynthesis and export protein [Helicobacter pylori 51]
Length = 358
Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L + ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILTILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|16799762|ref|NP_470030.1| flagellar biosynthesis protein FlhB [Listeria innocua Clip11262]
gi|16413139|emb|CAC95919.1| lin0687 [Listeria innocua Clip11262]
Length = 348
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIK 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|313624921|gb|EFR94829.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL J1-023]
Length = 348
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 184/350 (52%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + + + +L+ ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLSQIFALFKNEFLALFLVIAIIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 292 LFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 341
>gi|256833222|ref|YP_003161949.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
gi|256686753|gb|ACV09646.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
Length = 380
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ D +TE + K+++D +G+ S++ S ++ I A L F F +
Sbjct: 1 MSD-DQSQERTEEATPKRMKDVRKDGSLQKSQDLSAWAGIGAGTAVLPFVFGNVEKHIED 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + A+ D +V +L + P L + + I + + +
Sbjct: 60 VLMNISTIASTP---DPLLVVPMLGDALAGILPALAPLLAVVFIAAILANGVGGYYI-AT 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP+FK+ +L +G+K+ + + L +K+ +K +++G ++ + + + +
Sbjct: 116 KKLKPTFKQFNLIKGMKQKFGMQALWQGVKALLKTVVIGAVLYLLIQGMIPVIQQSGALT 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L +A +++ + L +LD+ + K KM+K+EIKDE K + G+P
Sbjct: 176 MRAVLGYASEKFMQLMWTAVAAGIALAILDVVVVMKRNRKKTKMTKKEIKDENKNTEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K +S + R++M+ + + A +++ NPTH A+AL Y+ E AP LVAKG+NL+A
Sbjct: 236 LLKGAIRSRQLAMSRNRMIASVADADVVVVNPTHVAVALTYVAGE-GAPKLVAKGKNLVA 294
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R+ A H++P+ + LAR+L I IPP + AVAQ++ + +
Sbjct: 295 QRIREEAEAHDVPLVRDIPLARALNAHCEIGHPIPPALFTAVAQVLAFVMLLR 347
>gi|256831232|ref|YP_003159960.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
4028]
gi|256580408|gb|ACU91544.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
4028]
Length = 355
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++D +TE + K+ A +GN P S+E ++L L+ L + + +
Sbjct: 1 MAQHDPS--RTENATPKRRNKARGQGNVPKSQELPKPLTLLFGLLMLQLYLGTIRTEIEN 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+H +L + + L S S +V+P +++ + +Q +
Sbjct: 59 LMHWFFTEGFVFEL-TPASVYTLFRDCLYSISLMVLPIMIVIAVAAFIVVRLQVGKLWAP 117
Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
KP FK ++ G+K++ S V KS V I L + + ++
Sbjct: 118 KVFKPQFKMFNVLSGLKKLLISKQTFVRLAKSIFMAAAVAIGPYIVLKQAFGEVIPLFYQ 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
SI + + + + L + + + D+ ++ + LKM+K E+KDE KQ+ G+
Sbjct: 178 PAESIAAYVLKSGQTMFYYALTPMILIGIADLLYTRWDYEENLKMTKSEVKDERKQAEGD 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK++Q+ + + +MM+ +A ++ITNPTH A+A+RY E AP+++AKG +
Sbjct: 238 PAIKSKQRQKMMAVMMRRMMQDVPKADVVITNPTHLAIAIRYNAMEAPAPMVLAKGAGAV 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A++++ IA E+N+PI E LAR+L+K + + IP FY+AVA ++ +IY K
Sbjct: 298 AQRIKDIARENNVPIRENKPLARALYKVIEVGDTIPEEFYQAVAAILAQIYKTK 351
>gi|323165329|gb|EFZ51117.1| flagellar biosynthetic protein FlhB [Shigella sonnei 53G]
Length = 319
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 83/283 (29%), Positives = 157/283 (55%)
Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
D + I+ + L A ++P + ++ + S ++ V + ++P F ++
Sbjct: 5 HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 64
Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
+ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A
Sbjct: 65 NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 124
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + +
Sbjct: 125 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 184
Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+
Sbjct: 185 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 244
Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 245 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 287
>gi|259417182|ref|ZP_05741101.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
gi|259346088|gb|EEW57902.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
Length = 363
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 82/346 (23%), Positives = 159/346 (45%), Gaps = 2/346 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
K+ P+ +K+ A EG+ P S + +S L LI + ++ + L ++
Sbjct: 10 KSFEPTPEKLRKARLEGDVPKSNDLLQAASYLGLLIAFYTAGGSSVEALGTVLMSMIDQP 69
Query: 70 TQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + +A V+ ++ + + Q+ V ++P
Sbjct: 70 DRLAPVFFGDGIAAPVAGEFISAALTSVMAWFIVPAALVLLAVFAQKAMVFAPKRIEPKL 129
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+S+ + K + + L F KSF K++L + I L+ M+ + +P+S++
Sbjct: 130 SRLSVIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGIYLSWRLPEMIASVGTSPYSVVPF 189
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ LI+ L+ + ++D + ++ K MS++++ DE+K S G+P K ++K
Sbjct: 190 LVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEGDPHTKGQRK 249
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
R + ++ A A ++I NPTHYA+AL++ + AP VAKG + +A +R+IA
Sbjct: 250 QKGREIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDGVAAMIREIA 309
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+ +P+ +P AR+L+ V + I Y VA I +
Sbjct: 310 QENGVPLHSDPPTARALYATVEVGDEIAEEHYAPVAAAIRFAEEMR 355
>gi|116626501|ref|YP_828657.1| type III secretion exporter [Candidatus Solibacter usitatus
Ellin6076]
gi|116229663|gb|ABJ88372.1| type III secretion exporter [Candidatus Solibacter usitatus
Ellin6076]
Length = 354
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 5/352 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ +++E A EG P ++E + L L + +
Sbjct: 1 MADKSG---KTEQPTQRRLEKARTEGQFPAAKEFVSALQFMVFLGLLGSGGAGWFKQLRQ 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L A +L ++ ++ + ++ + + + L ++
Sbjct: 58 TTRSLFGLAFAPELR-PEDLIHVMWQIFQQLLLPLVMAGVAVAVATVAFRLATTRFGISF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P R + +K L ++ + + + + E + +
Sbjct: 117 KKLMPDAARFNPLSRLKD-LPKQTLPALAQAAFLLPVFLWAVWVVGQEKLDAFMALPMQS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + ++ ++ + +D+ + S+L+MSKQEI++E+K GNP
Sbjct: 176 VESGMNLICASLMELFWKAAGVFLLVGCVDLARQLQRHKSELRMSKQEIREEMKDVEGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R + + R R+R +MM+ AT ++ NPTHYA+A+RY AP++VAKG N +A
Sbjct: 236 QMKARIRRLQRDRVRKQMMKDVPTATAVVVNPTHYAVAIRYQMDGMAAPMVVAKGMNHLA 295
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R+ A EH +PI E P LA++L+K V + IPP Y+AVA+++ I+
Sbjct: 296 LRIRQKATEHQVPIIENPPLAQALYKSVEVGQEIPPHLYRAVAEILAYIFKL 347
>gi|170698356|ref|ZP_02889430.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
gi|170136695|gb|EDT04949.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
Length = 352
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 162/343 (47%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++ EG S + +S+ + ++ L ++ + + +
Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVLTAGQHYLADTLRAVVKEAI 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + L H+ L A L+ + ++ + Q ++L V P
Sbjct: 62 DFTHGPR--ELQDLSVALVHMGLQALGLLCGIAAVALIAAFLALAPQTGLKISLKAVMPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + ++
Sbjct: 120 LASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQLIA 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + V+++ L + D + K +MSK E+K E K+S GNP +K +
Sbjct: 180 VLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R+
Sbjct: 240 KRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLRQQ 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +PI P +AR L K VP+N IP ++ VA ++ +
Sbjct: 300 AMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341
>gi|317182082|dbj|BAJ59866.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F57]
Length = 358
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EHNI I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHNIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|300697466|ref|YP_003748127.1| Hypersensitivity response secretion protein hrcU, type III
secretion exporter [Ralstonia solanacearum CFBP2957]
gi|299074190|emb|CBJ53735.1| Hypersensitivity response secretion protein hrcU, Type III
secretion exporter [Ralstonia solanacearum CFBP2957]
Length = 354
Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + +L+ + L + + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
R + + L H++L + +P +F + + Q VL+ V+
Sbjct: 62 DVDGSR--HPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K V + + ++ + I
Sbjct: 120 MNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPDEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LAR+L++ V + A+P ++ VA+++ +
Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342
>gi|115360600|ref|YP_777737.1| type III secretion system protein HrcU [Burkholderia ambifaria
AMMD]
gi|115285928|gb|ABI91403.1| type III secretion exporter [Burkholderia ambifaria AMMD]
Length = 352
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 85/343 (24%), Positives = 162/343 (47%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++ EG S + +S+ + ++ L ++ + + +
Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVLTAGQHYLADTLRAVVKEAI 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + L H+ + A L+ + ++ + Q ++L V P
Sbjct: 62 DFTHGPR--ELQDLSVALVHMGVQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVMPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + ++
Sbjct: 120 LASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDRSVPQLIA 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + V+++ L + D + K +MSK E+K E K+S GNP +K +
Sbjct: 180 VLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R+
Sbjct: 240 KRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGVDEQALRLRQQ 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +PI P +AR L K VP+N IP ++ VA ++ +
Sbjct: 300 AMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341
>gi|15596887|ref|NP_250381.1| translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
gi|107101122|ref|ZP_01365040.1| hypothetical protein PaerPA_01002154 [Pseudomonas aeruginosa PACS2]
gi|218892354|ref|YP_002441221.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
gi|254234789|ref|ZP_04928112.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|254240035|ref|ZP_04933357.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|9947663|gb|AAG05079.1|AE004596_5 translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
gi|126166720|gb|EAZ52231.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|126193413|gb|EAZ57476.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|218772580|emb|CAW28363.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
Length = 349
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 182/343 (53%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + IL+ + L+ F Y + +LL
Sbjct: 2 SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSD---YYLEHLGKLLL 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A L + +L +L L+ P LL+ + + S++ Q +L+L+ VKP
Sbjct: 59 LPAEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFLLSLDSVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + +
Sbjct: 119 LKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDCVAP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P IK+++
Sbjct: 179 VSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + R+++I+ NPTH A+ +RY + E P++ K + +A ++R+I
Sbjct: 239 RQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALRVRRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E IP+ + LAR+L + ++ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVLRWL 341
>gi|320177410|gb|EFW52411.1| Flagellar biosynthesis protein FlhB [Shigella dysenteriae CDC
74-1112]
Length = 324
Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats.
Identities = 84/286 (29%), Positives = 159/286 (55%)
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
++D + I+ + L A ++P + ++ + S ++ V + ++P F
Sbjct: 7 HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKF 66
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + +
Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAESPITAMGN 126
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R +
Sbjct: 127 AMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIR 186
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I
Sbjct: 187 QMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIG 246
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E+N+P E P LAR+L++ I IP Y AVA+++ I+ K
Sbjct: 247 AENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 292
>gi|261209856|ref|ZP_05924157.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
gi|262404466|ref|ZP_06081021.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
gi|260841042|gb|EEX67567.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
gi|262349498|gb|EEY98636.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
Length = 330
Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 77/306 (25%), Positives = 154/306 (50%), Gaps = 1/306 (0%)
Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
++F + + + L S ++ ++ D+ + ++ ++ ++ L+ +
Sbjct: 1 MWFGEALAQGLFTAMQRLF-SLSREEIFDVGKLFDIIGGALVNLLLPLLMILITLFTAAL 59
Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
+ P +++ G KR++ + + V +KS +K++LV + +
Sbjct: 60 IGAAGIGGINFSAEAAMPKLSKMNPLSGFKRMFGMQSWVELLKSILKVMLVAGVAFYLIE 119
Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
+ + ++HA + +++I + + +DI + Q ++LKM+KQ
Sbjct: 120 ASQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQ 179
Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
E+KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q +
Sbjct: 180 EVKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDK 239
Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
APV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++
Sbjct: 240 APVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLA 299
Query: 348 KIYHKK 353
++ K
Sbjct: 300 FVFQLK 305
>gi|172064924|ref|YP_001815636.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
gi|171997166|gb|ACB68083.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
Length = 352
Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 162/343 (47%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++ EG S + +S+ + ++ L ++ + + +
Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVLTAGQHYLADTLRAVVKEAI 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + L H+ L A L+ + ++ + Q ++L V P
Sbjct: 62 DFTHGPR--ELQDLSVALVHMGLQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVMPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + ++
Sbjct: 120 LASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQLIA 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + V+++ L + D + K +MSK E+K E K+S GNP +K +
Sbjct: 180 VLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R+
Sbjct: 240 KRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLRQQ 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +PI P +AR L K VP+N IP ++ VA ++ +
Sbjct: 300 AMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341
>gi|207724585|ref|YP_002254982.1| hrp protein hrcu [Ralstonia solanacearum MolK2]
gi|206589807|emb|CAQ36768.1| hrp conserved protein hrcu [Ralstonia solanacearum MolK2]
Length = 354
Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + +L+ + L + + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
R + + L H++L + +P +F + + Q VL+ V+
Sbjct: 62 DVDGSR--HPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K V + + ++ + I
Sbjct: 120 MNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPQEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LAR+L++ V + A+P ++ VA+++ +
Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342
>gi|83747856|ref|ZP_00944889.1| HrcU [Ralstonia solanacearum UW551]
gi|207739220|ref|YP_002257613.1| hrp protein hrcu [Ralstonia solanacearum IPO1609]
gi|83725503|gb|EAP72648.1| HrcU [Ralstonia solanacearum UW551]
gi|206592593|emb|CAQ59499.1| hrp conserved protein hrcu [Ralstonia solanacearum IPO1609]
Length = 354
Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + +L+ + L + + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ R + + L H++L + +P +F + + Q VL+ V+
Sbjct: 62 DVDSSR--HPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S++++++ +K +K V + + ++ + I
Sbjct: 120 MNAINPASGLKRIFSMSSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LAR+L++ V + A+P ++ VA+++ +
Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342
>gi|116049640|ref|YP_791555.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
gi|296389926|ref|ZP_06879401.1| translocation protein in type III secretion [Pseudomonas aeruginosa
PAb1]
gi|313110376|ref|ZP_07796265.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
gi|115584861|gb|ABJ10876.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310882767|gb|EFQ41361.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
Length = 349
Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 182/343 (53%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KK+ DA +G S+E + IL+ + L+ F Y + +LL
Sbjct: 2 SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSD---YYLEHLGKLLL 58
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A L + +L +L L+ P LL+ + + S++ Q +L+L+ VKP
Sbjct: 59 LPAEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFLLSLDSVKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + +
Sbjct: 119 LKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDCVAP 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P IK+++
Sbjct: 179 VSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIKSKR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + R+++I+ NPTH A+ +RY + E P++ K + +A ++R+I
Sbjct: 239 RQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLITLKHTDALALRVRRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E IP+ + LAR+L + ++ IP +A A+++ +
Sbjct: 299 AEEEGIPVLQRVPLARALLRDGNVDQYIPADLIQATAEVLRWL 341
>gi|312115253|ref|YP_004012849.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
gi|311220382|gb|ADP71750.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
Length = 353
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 119/352 (33%), Positives = 205/352 (58%), Gaps = 1/352 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++N DNKTEAPS K++ D+L++ P SRE + +++ A +++L+ V
Sbjct: 1 MADNSETDNKTEAPSEKRLRDSLDKDGGPSSREVNSAAALFALVLFLMTMAPADFGEVVK 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L V + + LE+ + F+L L+ +P +L+ + + + Q P L
Sbjct: 61 NLSVFIEDPSGFSLENGADAFFILQLAGLTIFNFALPLVLMLLAATLLASFAQNPPTLIF 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N + P R+S + G+KR+++ + +V+ +KSF+K +V ++ +L +
Sbjct: 121 NKIAPDLARISPQAGLKRLFAFDAVVDLLKSFIKFGIVAIAFYVAFQGGAAALLVL-QTD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + K +++ L A L V D+ W+ +W KLKMS+Q++KDE KQS G+P
Sbjct: 180 SASTIELIKRLAFKAILICALACAVLAVADVFWTRFRWLRKLKMSRQDLKDEHKQSEGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ R ++IAR+R+R MM + AT++I NPTHYA+ALRY++ ++ AP +AKG+N +A
Sbjct: 240 MLRARARAIARARVRRNMMTSVPNATVVIANPTHYAVALRYVRGQDRAPQTLAKGKNKLA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++R IA ++N+P+ E +LA+SL V ++ IP FYKAVA++I I K
Sbjct: 300 LRIRSIAEDNNVPVVENKALAKSLHDAVRVDQPIPHEFYKAVAEVIIYINKK 351
>gi|171322350|ref|ZP_02911175.1| type III secretion protein, YscU/HrpY family [Burkholderia
ambifaria MEX-5]
gi|171092322|gb|EDT37690.1| type III secretion protein, YscU/HrpY family [Burkholderia
ambifaria MEX-5]
Length = 360
Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 167/350 (47%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE PS +K++ +G S++ + ++ A + L S ++
Sbjct: 1 MAE-----EKTEEPSERKLKKVREKGQIAKSKDVADAVTLAAAIGVLTAGESMLTGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA+ ++P ++ ++ GI S Q ++ L
Sbjct: 56 TIRTALDFVNGER--TPQATLSALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F ++ GIK+I+S+ +L+ +K VK +++ +I + + ++ +
Sbjct: 114 EPVMPKFDAINPMAGIKKIFSMKSLLELVKMIVKAVVLACVIWKMMMSLFPLVVASVYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+L ++ L + D + + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVALVVTVFAAADYKIARMMFMRDNRMTKEEAKRENKESEGDP 233
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAPARQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI P +AR+L++ V ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|145297440|ref|YP_001140281.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850212|gb|ABO88533.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 378
Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+N + +KTE SS+K+ A EG S+E S +L + + + P +
Sbjct: 1 MSQN-SAQDKTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + D ++ LS +++P + + ++ VL
Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ PS ++++ +G+KR+ S ++L+ +KS +KI+L+G+ + + L + ++
Sbjct: 119 KKLLPSAEKLNPLKGLKRMLSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + A + + I++ + VLD+ + +L+M+KQE+KDE K S G P
Sbjct: 179 PQAAMEQALQILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + R ++ + +A +II N THYA+A++Y +AP ++AKG + +A
Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNTTHYAVAIKYDPERANAPYVIAKGVDGMA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++R++A +H+ + P L R+++ ++ +P Y AVA ++ + +
Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351
>gi|222100640|ref|YP_002535208.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
4359]
gi|221573030|gb|ACM23842.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
4359]
Length = 315
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 92/318 (28%), Positives = 169/318 (53%), Gaps = 7/318 (2%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
+ + L + L F GI S+ D+ L+ LE+ ++ L + ++
Sbjct: 1 MAITFLIFAVVLKIFGPQGIASIARDVSAFLS------LEETEDLLSALGYFK-DILLMI 53
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
+L M GI IQ +L ++P R++ EG KR++S+ ++V +K+ +K+
Sbjct: 54 GALMLFTMAAGILVGAIQTRFLLAFKTLRPDLNRINPVEGFKRLFSLRSVVELLKAVMKV 113
Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
+++G ++ L + ++ M+ + + +V + + + L V D +
Sbjct: 114 VVIGVVVYQVLKDRWYEMVLLSDMELEDAFLNLWDVASEVSLKSGIALLALAVFDYAYQR 173
Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
+ ++M+KQE+KDE K+ GNP +K RQ+ + +R +MME +A ++ITNPTH+
Sbjct: 174 WDYEKSIRMTKQEVKDEFKEVEGNPEVKRRQRQMMYDILRRRMMEEVPKADVVITNPTHF 233
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y +AP +VAKG + +A K+ +IA E+ + I PSLAR+L+ +V I IP
Sbjct: 234 AVALKYDPDTMNAPTVVAKGVDHLALKIIEIARENGVAIVRNPSLARTLYYRVEIGEEIP 293
Query: 336 PVFYKAVAQLIYKIYHKK 353
FY+ VA+++ +Y +K
Sbjct: 294 VEFYRIVAEVLVYVYTRK 311
>gi|171316786|ref|ZP_02905997.1| type III secretion protein, YscU/HrpY family [Burkholderia
ambifaria MEX-5]
gi|171098044|gb|EDT42860.1| type III secretion protein, YscU/HrpY family [Burkholderia
ambifaria MEX-5]
Length = 377
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 85/344 (24%), Positives = 165/344 (47%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ K++ DA +G S E S ++ +C+ LL+F + + +
Sbjct: 18 SGEKTELPTPKRLRDARKDGQTSKSTEISDTIAM-SCVAALLWFAGNHFSDMVRGIVAVA 76
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ E + L ++ + A +V+P + + G Q V+ + + P
Sbjct: 77 LEFSHPDAEQ-KALDASLYNIGMHAISVVLPCVFAGAIAATGISFAQVGAVIAMKPIVPK 135
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ V+ G+KR++S+ + +K+ VK +LVGT++ +++ + ++ + +
Sbjct: 136 LENVNPAAGLKRMFSLRTAIELIKTIVKALLVGTVMWFAVSALFPLVVGSLHQPLAGLSV 195
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K++ + + + ++D+ + ++KMSK +IK E KQ G+P+IK +
Sbjct: 196 MFWELWLKLIAIACIAFLIIGIVDLKLQKVMFIRQMKMSKDDIKREHKQQEGDPLIKGER 255
Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+AR +A A +++ NPTHYA+ALRY E+ P +V KG + A +R
Sbjct: 256 LRLARELATSAPEKKAVGLANVVLVNPTHYAVALRYAPHEHPLPRVVEKGMDASAALIRH 315
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E P+ P +AR+L+K V I +P ++ VA ++ +
Sbjct: 316 YAEELGTPVIGNPPVARALYK-VDIGGPVPRELHETVAAILRWV 358
>gi|167841178|ref|ZP_02467862.1| secretion system apparatus protein SsaU [Burkholderia thailandensis
MSMB43]
Length = 359
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 77/344 (22%), Positives = 153/344 (44%), Gaps = 3/344 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK DA +G S E + + + L Y LF + + + +
Sbjct: 3 EKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLFEGPHLMQAFETLTRASIDV 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + H + +L + +R VI L+ + + + + Q P+L +KPS
Sbjct: 63 INDDLVTALGHWLGVLGAV---VTRFVIGLALVVIGVTVIAVVAQIGPLLASEALKPSVD 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S+ +L F KS K+ ++ I + E ++ + +
Sbjct: 120 KINPINNAKQMFSMKSLFEFAKSLFKVGVLSLIFYYLIREYAPSLQFLPLCSVECGFAVS 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + ++ F + D + + +L MS ++IK E K S GNP +K+++K
Sbjct: 180 VRLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSEGNPEMKHKRKE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
I R + +++T+++ NPTH A+ L Y P +V G A + +A
Sbjct: 240 IHREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHGKRALHIVALAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+P+ E +AR+L ++ + IPP ++ VA ++ + H
Sbjct: 300 RAGVPVVENVPVARALAARLAVGQVIPPDLFEPVAHILRLVMHL 343
>gi|85706162|ref|ZP_01037257.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
gi|85669326|gb|EAQ24192.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
Length = 362
Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats.
Identities = 93/355 (26%), Positives = 162/355 (45%), Gaps = 2/355 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ + K S K+++A +G S + + S L+ LL P + +
Sbjct: 1 MAGEEDESEKPHEASQNKMDEARKKGEIARSADLNTAGSYGGLLLALLALGGPVSQTTGA 60
Query: 61 DLHVLLA--SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+L VLL A L H L + + V LL + + + QR V+
Sbjct: 61 NLAVLLGQPHAFADLLFQGGHASAALGTVLTKVALAVSALFLLPAAVTLLTVIAQRAFVI 120
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ ++P R++ E K + + L F KS K+ L ++ + L+ M+ +
Sbjct: 121 APSKLEPKLSRINPIENAKNKFGASGLFEFGKSIAKLSLYCILLGLFLSYRMSEMVGALH 180
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
A P I + + L+++LL + D W + + + +MS E++DE KQ+YG
Sbjct: 181 AEPAMIGVMIGQLIIEFLLVVLLITLAVGAADFTWQFFEHLRRQRMSHMELRDEFKQNYG 240
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P +K + + +MM + ++I NPTHYA+AL++ + AP+ VAKG +
Sbjct: 241 DPAVKQQHRRRGMDIASRQMMAEVPGSDVVIVNPTHYAIALKWSRAPGAAPICVAKGVDH 300
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA +R +AYE +P+ ++P+ AR+L I I P +Y AVA I +
Sbjct: 301 IALAIRDLAYESGVPVQQDPATARALHATTEIGQEIDPTYYAAVAVAIRYAEDMR 355
>gi|255745141|ref|ZP_05419090.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
gi|262153469|ref|ZP_06028599.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
gi|255736971|gb|EET92367.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
gi|262030706|gb|EEY49340.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
Length = 330
Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 76/306 (24%), Positives = 152/306 (49%), Gaps = 1/306 (0%)
Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
++F + + L ++ ++ D+ + ++ ++ ++ L + +
Sbjct: 1 MWFGEILAKGLMVAMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAAL 59
Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
+ P +++ G+KR++ + + V +KS +K++LV + +
Sbjct: 60 IGAAGVGGISFSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIE 119
Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
+ + ++HA + +++I + + +DI + Q +LKM+KQ
Sbjct: 120 ASQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQ 179
Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
E+KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q +
Sbjct: 180 EVKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDK 239
Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
APV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++
Sbjct: 240 APVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLA 299
Query: 348 KIYHKK 353
++ K
Sbjct: 300 FVFQLK 305
>gi|193062073|ref|ZP_03043169.1| EscU [Escherichia coli E22]
gi|194426490|ref|ZP_03059045.1| EscU [Escherichia coli B171]
gi|260845709|ref|YP_003223487.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
gi|13447704|gb|AAK26703.1|AF200363_11 EscU [Escherichia coli]
gi|18034508|gb|AAL57530.1|AF453441_14 EscU [Escherichia coli]
gi|57434469|emb|CAI43886.1| EscU protein [Escherichia coli]
gi|192932293|gb|EDV84891.1| EscU [Escherichia coli E22]
gi|194415798|gb|EDX32065.1| EscU [Escherichia coli B171]
gi|195183210|dbj|BAG66755.1| T3SS structure protein EscU [Escherichia coli O111:H-]
gi|254692328|emb|CAR47969.1| EscU protein [Escherichia coli]
gi|254692396|emb|CAR48039.1| EscU protein [Escherichia coli]
gi|257760856|dbj|BAI32353.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
gi|323163021|gb|EFZ48854.1| hypothetical protein ECE128010_0617 [Escherichia coli E128010]
Length = 345
Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 157/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D +G+ S E L + + + V ++ + S
Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + ++P L+ + + + + Q + + +KPS +
Sbjct: 63 LNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I +F N + L
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
++IP+ E+ LARSL+K + I F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|215488991|ref|YP_002331422.1| secretion system apparatus protein SsaU [Escherichia coli O127:H6
str. E2348/69]
gi|260869698|ref|YP_003236100.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
gi|312967936|ref|ZP_07782148.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|2865279|gb|AAC38372.1| EscU [Escherichia coli]
gi|54311603|emb|CAG17518.1| EscU protein [Escherichia coli]
gi|215267063|emb|CAS11508.1| T3SS structure protein EscU [Escherichia coli O127:H6 str.
E2348/69]
gi|221361437|emb|CAX18590.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361494|emb|CAX18665.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361555|emb|CAX18745.1| Type III secretion system, LEE associated [Escherichia coli]
gi|257766054|dbj|BAI37549.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
gi|312287497|gb|EFR15405.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|323178898|gb|EFZ64474.1| hypothetical protein ECOK1180_2632 [Escherichia coli 1180]
Length = 345
Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 156/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D +G+ S E L + + + ++ + S
Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + ++P L+ + + + + Q + + +KPS +
Sbjct: 63 LNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I +F N + L
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
++IP+ E+ LARSL+K + I F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|170690587|ref|ZP_02881754.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
C4D1M]
gi|170145022|gb|EDT13183.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
C4D1M]
Length = 373
Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ K++ D +G S + +++ A + L F + ++ S + L
Sbjct: 2 SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVVGVLAFAAASFGGALRSIVTTAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ D + L L A +++P + + + + + Q + V P
Sbjct: 62 EFASGN--HDQPLMYGKLFDLGKQALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K VS +G+KRI+S +++ +K VK ++G ++ ++ ++ + +
Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMIVKAAIIGVVMWFTIKWILPLIVGSLYQPLPELSK 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K+ + + + V+D+ + KLKMSK E+K E KQ G+P IK +
Sbjct: 180 LFWSLLIKLFAVAVAVFIAIGVIDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239
Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+
Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + N+PI P +AR+L++ V I+ IP ++ VA ++ +
Sbjct: 300 FARDANVPIIGNPPVARALYR-VGIDEPIPEELFETVAAILRWV 342
>gi|238918897|ref|YP_002932411.1| secretion system apparatus protein SsaU [Edwardsiella ictaluri
93-146]
gi|48256991|gb|AAT41686.1| type three secretion apparatus protein U [Edwardsiella ictaluri]
gi|84663105|gb|ABC60087.1| EsaU [Edwardsiella ictaluri 93-146]
gi|238868465|gb|ACR68176.1| EsaU [Edwardsiella ictaluri 93-146]
Length = 351
Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats.
Identities = 82/339 (24%), Positives = 155/339 (45%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ K++ DA EG S++ + L++++ ++ + LA+
Sbjct: 3 EKTEQPTDKRLRDAREEGQVAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATLAT 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
L+ + L + R V +L ++ I + L++ + + PS +
Sbjct: 63 VNLPLLD---AMTLLTGEAATLMIRFVFGLAMLLIVTLILTGLVETGFLFAPKAIMPSAE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+S K++ S+ L K +KI+++G T + + + A+ + L+
Sbjct: 120 RISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLVRADAEAGLWVT 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + ++LL A V+D Y +L MS+++IK E K S G+P IK R++
Sbjct: 180 SKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSEGSPEIKQRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R + ++ + A++++ NPTH A+ LRY + E P +V G+ A+ + +A
Sbjct: 240 LHREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARAQHIVTLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
IP+ E LAR+L +P + AVAQL+
Sbjct: 300 ALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLLR 338
>gi|15804241|ref|NP_290280.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
EDL933]
gi|15833834|ref|NP_312607.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. Sakai]
gi|168748643|ref|ZP_02773665.1| EscU [Escherichia coli O157:H7 str. EC4113]
gi|168753530|ref|ZP_02778537.1| EscU [Escherichia coli O157:H7 str. EC4401]
gi|168759827|ref|ZP_02784834.1| EscU [Escherichia coli O157:H7 str. EC4501]
gi|168766127|ref|ZP_02791134.1| EscU [Escherichia coli O157:H7 str. EC4486]
gi|168772324|ref|ZP_02797331.1| EscU [Escherichia coli O157:H7 str. EC4196]
gi|168779862|ref|ZP_02804869.1| EscU [Escherichia coli O157:H7 str. EC4076]
gi|168785595|ref|ZP_02810602.1| EscU [Escherichia coli O157:H7 str. EC869]
gi|168798676|ref|ZP_02823683.1| EscU [Escherichia coli O157:H7 str. EC508]
gi|195936263|ref|ZP_03081645.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. EC4024]
gi|208808072|ref|ZP_03250409.1| EscU [Escherichia coli O157:H7 str. EC4206]
gi|208813986|ref|ZP_03255315.1| EscU [Escherichia coli O157:H7 str. EC4045]
gi|208819764|ref|ZP_03260084.1| EscU [Escherichia coli O157:H7 str. EC4042]
gi|209398003|ref|YP_002273176.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. EC4115]
gi|217326036|ref|ZP_03442120.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. TW14588]
gi|254795655|ref|YP_003080492.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. TW14359]
gi|261225799|ref|ZP_05940080.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258844|ref|ZP_05951377.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK966]
gi|291285068|ref|YP_003501886.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
str. CB9615]
gi|12518474|gb|AAG58844.1|AE005597_2 escU [Escherichia coli O157:H7 str. EDL933]
gi|3414914|gb|AAC31525.1| L0046 [Escherichia coli]
gi|13364055|dbj|BAB38003.1| type III secretion system EscU protein [Escherichia coli O157:H7
str. Sakai]
gi|187771533|gb|EDU35377.1| EscU [Escherichia coli O157:H7 str. EC4196]
gi|188016976|gb|EDU55098.1| EscU [Escherichia coli O157:H7 str. EC4113]
gi|189002618|gb|EDU71604.1| EscU [Escherichia coli O157:H7 str. EC4076]
gi|189359336|gb|EDU77755.1| EscU [Escherichia coli O157:H7 str. EC4401]
gi|189364785|gb|EDU83204.1| EscU [Escherichia coli O157:H7 str. EC4486]
gi|189369865|gb|EDU88281.1| EscU [Escherichia coli O157:H7 str. EC4501]
gi|189374533|gb|EDU92949.1| EscU [Escherichia coli O157:H7 str. EC869]
gi|189378742|gb|EDU97158.1| EscU [Escherichia coli O157:H7 str. EC508]
gi|195957531|gb|ACG59642.1| type III secretion system protein EscU [Escherichia coli O157:H7]
gi|195957590|gb|ACG59700.1| type III secretion system protein [Escherichia coli]
gi|195957647|gb|ACG59756.1| type III secretion system apparatus protein SsaU [Escherichia coli]
gi|208727873|gb|EDZ77474.1| EscU [Escherichia coli O157:H7 str. EC4206]
gi|208735263|gb|EDZ83950.1| EscU [Escherichia coli O157:H7 str. EC4045]
gi|208739887|gb|EDZ87569.1| EscU [Escherichia coli O157:H7 str. EC4042]
gi|209159403|gb|ACI36836.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. EC4115]
gi|217322257|gb|EEC30681.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. TW14588]
gi|254595055|gb|ACT74416.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|255348328|gb|ACU09470.1| secretion system apparatus protein SsaU [Escherichia coli]
gi|290764941|gb|ADD58902.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
str. CB9615]
gi|320639370|gb|EFX08985.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. G5101]
gi|320644814|gb|EFX13850.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
str. 493-89]
gi|320650078|gb|EFX18574.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
str. H 2687]
gi|320655425|gb|EFX23360.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661051|gb|EFX28487.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
str. USDA 5905]
gi|320666177|gb|EFX33183.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
str. LSU-61]
Length = 345
Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 156/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D +G+ S E L + + + ++ + S
Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + ++P L+ + + + + Q + + +KPS +
Sbjct: 63 LNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I +F N + L
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
++IP+ E+ LAR+L+K + I F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|76574808|gb|ABA47282.1| HrcU [Pseudomonas cichorii]
Length = 361
Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats.
Identities = 72/349 (20%), Positives = 157/349 (44%), Gaps = 13/349 (3%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A + +L G+ + + + +
Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKELMVLPIME 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + ++T L ++P L + + + +Q P+ +K F+
Sbjct: 63 LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAIMRLAGGWVQFGPLFATEALKLDFE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ ++++S L N S K +++ ++ L + ++ + S
Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +KS
Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239
Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+AR + A +++ NPTH+A+AL Y + P ++ KG++ A+++
Sbjct: 240 LAREISQQPGSAAPAKAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A + +P+ LAR+L+++ + IP +AVAQ +Y
Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ----VYRL 343
>gi|83814498|ref|YP_446683.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
gi|294508619|ref|YP_003572678.1| flagellar biosynthetic protein flhB [Salinibacter ruber M8]
gi|83755892|gb|ABC44005.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
gi|294344948|emb|CBH25726.1| Flagellar biosynthetic protein flhB [Salinibacter ruber M8]
Length = 353
Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats.
Identities = 88/354 (24%), Positives = 176/354 (49%), Gaps = 5/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE K P+ +++E A +GN + E +L + + S+
Sbjct: 1 MSE---TQEKQYDPTPRRLEKAREKGNVLRATEPVSVGLLLTAMAVFSVGGASAFQSLQD 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + L + + L+ + + ++ P ++ ++ +G ++Q ++
Sbjct: 58 MAARIFLRSARMSL-TPASLQRLVAEIGAQVAGMLAPLFIVLIVAAVGLNMVQSGWNVSF 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P RV+ EG+K+I+S F K+ +KI +VG I ++ M+ +
Sbjct: 117 TPIQPQLSRVNPLEGLKQIFSSKGAFGFAKTLLKIGVVGPIAYFAMRPLIPEMVQVYTLP 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++L A ++ +L+ + + LD + ++Y LKMSK+E++DE K++ G+P
Sbjct: 177 LPALLNQAADWFFALMWRVLMGLVVIAALDYAFERWKYYEDLKMSKKEMEDEQKETEGDP 236
Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
+ +++ A+ +M A ++ ++TNPTHYA+ALRY E AP ++ KG
Sbjct: 237 EFEEKRREKAKELAEQPRMDHAVMKSDAVVTNPTHYAIALRYDPDEAPAPRVLLKGVRKR 296
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +++++A E ++P FE SLA +L++ VP IP Y AVA ++ ++Y ++
Sbjct: 297 ALRIKELAAEFDVPTFENRSLAHALYENVPEEEEIPEELYPAVAAILAEVYEQR 350
>gi|323189404|gb|EFZ74685.1| hypothetical protein ECRN5871_2292 [Escherichia coli RN587/1]
Length = 345
Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D +G+ S E L + + + ++ + S
Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + ++P L+ + + + + Q + + +KPS +
Sbjct: 63 LNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I F N + L
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFAYFTGLNAYQALVVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
++IP+ E+ LARSL+K + I F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|312876517|ref|ZP_07736500.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
gi|311796728|gb|EFR13074.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
Length = 303
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 88/295 (29%), Positives = 159/295 (53%)
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
S LED+ LL+ + ++ ++++P L M+ Q ++
Sbjct: 1 MQQGSKYFFSNLNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLI 60
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+K SF++++ EG KRI+SIN++V +KS +K++++G +L+
Sbjct: 61 TGQSLKMSFQKINPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYG 120
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
N +I+ + + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ G
Sbjct: 121 MNVLTIVKFSLDSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEG 180
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
NP IK++ + R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++
Sbjct: 181 NPQIKSKIRERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDY 240
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA K+++ A +H I I E LAR+L+ I IPP Y+AVA+++ +Y K
Sbjct: 241 IALKIKQEAIKHRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 295
>gi|89069813|ref|ZP_01157148.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
HTCC2516]
gi|89044614|gb|EAR50730.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
HTCC2516]
Length = 359
Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 173/353 (49%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS +D +K+ P+ KK++DA +G+ P S + + ++ L+ L + + S
Sbjct: 1 MS-HDDGADKSFEPTQKKLDDARRKGDLPRSADLTTAAAYAGFLLAALALGGGVVDGMGS 59
Query: 61 DLHVLLASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L L+ A E + + L+A+ + P LL + + + QR V
Sbjct: 60 LLRALVERADALSAEMFAGGAAPRSGAVILAAAGALAPILLGPAAAALVAVIAQRGLVFA 119
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + P R+S K+ + L F KSF K+ + + + L+ ++ I
Sbjct: 120 PSKLAPKLSRISPLSTAKQKFGRTGLFEFAKSFAKLTIYSITLGLFLSARLPDIVGTIGM 179
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P I + +L++++L A + LD+ + K +MS++E+ DE+KQS G+
Sbjct: 180 APAIIAGELLRLMLDLLLVVVLIAAAIGALDLLFQRADHLRKNRMSRKEVTDEMKQSEGD 239
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K +++ A + +MM A ++I NPTHYA+AL++ + APV VAKG + I
Sbjct: 240 PAMKQQRRQKAVAIATTQMMADVPTADVVIVNPTHYAVALKWDRGSPGAPVCVAKGVDAI 299
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A ++R++A EH IP+ +P AR+LF + I + I P Y+AVA I
Sbjct: 300 AARIRELALEHVIPLHSDPPTARALFAETEIGAEIHPDHYRAVAAAIRFAERL 352
>gi|323530321|ref|YP_004232473.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
CCGE1001]
gi|323387323|gb|ADX59413.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
CCGE1001]
Length = 373
Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 167/344 (48%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ K++ D +G S + +++ A + L F + ++ S + L
Sbjct: 2 SEEKTEQPTDKRLRDTRKDGETSKSTDLVDAATMAAVVGVLAFAAANFGGALRSIVSTAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ R D + L L A +++P + + + + + Q + V P
Sbjct: 62 EFASGR--HDEPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K VS +G+KRI+S +++ +K +K ++G ++ ++ ++ + +
Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMVIKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ V KV + + + V+D+ + KLKMSK E+K E KQ G+P IK +
Sbjct: 180 LFWSLVIKVFAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239
Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+
Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + N+PI P +AR+L+K V ++ IP ++ VA ++ +
Sbjct: 300 FARDANVPIIGNPPVARALYK-VGLDEPIPEELFETVAAILRWV 342
>gi|296531764|ref|ZP_06894586.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
49957]
gi|296267903|gb|EFH13708.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
49957]
Length = 370
Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 164/350 (46%), Gaps = 1/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KT S +K++ A G+ P+SRE S F L+ L ++
Sbjct: 1 MAEE-TGQEKTLDASPRKLQQARERGDLPMSREGSSFGLYFITLLLLWLAGGLIGQRFSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L LL + + + + +++P L + + +L+Q VL
Sbjct: 60 VLLPLLEQPEAFLELTEAGHRRAALAVVEALALVLLPVFALLLAGSLLPHLLQNNVVLAP 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +S+ G +R++ + L F K K V + + +
Sbjct: 120 QRLEPKLSHLSIISGFRRLFGLKGLFEFAKGLTKAGAVAGACWLVAAPLLEGSPQLAALD 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + +L+ I L A + +LDI + ++ + +M+ QE+++E++ + G+P
Sbjct: 180 AAAFGPLVLRALAGMLLAITLVAAGVAILDISFQRFEYARRQRMTHQEMREEMRATDGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K K + + +M+ AT+++TNPTHYA+ALRY + + APV VAKG + +A
Sbjct: 240 HVKAALKKKRKQLSQRRMLADVPGATVVVTNPTHYAVALRYERGRDVAPVCVAKGVDRMA 299
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++R +A + + E+ +LAR+L V + IPP ++AVA++I ++
Sbjct: 300 LRIRDLARGAGVAVMEDRALARALHASVEVGQVIPPAHFEAVAKIIGIVW 349
>gi|32266517|ref|NP_860549.1| flagellar biosynthesis protein FlhB [Helicobacter hepaticus ATCC
51449]
gi|32262568|gb|AAP77615.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
51449]
Length = 375
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 173/352 (49%), Gaps = 9/352 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KT+APS+ KI+ A EGN S E + F +L L + I
Sbjct: 1 MAD----EEKTQAPSAHKIQKAREEGNVSKSPELAGFFILLVGLGLMFLLIPFWIECAQR 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
H + D + L+ + L ++ P L+ M+ G+ + + Q +L+
Sbjct: 57 IFHHINKLIILDV--DRRLLGNLMLSIGLEVFFMLAPLFLVLMITGVIANIAQFGLLLSP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +++ GIK + S+ +++ +K+ + + + + +
Sbjct: 115 KAIKPKISKINPITGIKNVISLKKILDGFMITLKVFVAFIVGFAVFVSFFNELPSVSMSG 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ ++L+ + V D +Q+ LKMS +E+KDE KQ +P
Sbjct: 175 LYGQIMWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE---NDAPVLVAKGQN 297
+K + + + + ++MM+ A+++ITNPTHYA+ALRY + E P+LVAKG +
Sbjct: 235 EVKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYSEKEIAQGMPPILVAKGID 294
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+A +++ IA E++I I E P LAR L++Q+ +N IP + AV Q++ ++
Sbjct: 295 ELAIRIKSIAREYDIKIIENPPLARELYRQLDLNQVIPHDLFAAVGQVLSEV 346
>gi|307725656|ref|YP_003908869.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
CCGE1003]
gi|307586181|gb|ADN59578.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
CCGE1003]
Length = 388
Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ K++ D +G S + +++ A L L F + ++ S +++ L
Sbjct: 24 SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVLGVLAFAAAHFGGALRSIVNIAL 83
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ D + L L A +++P + + + + + Q + V P
Sbjct: 84 EFVSGS--HDQPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 141
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K VS +G KRI+S +++ +K VK ++G ++ ++ ++ + +
Sbjct: 142 LKHVSPVDGFKRIFSWRTVIDLVKMIVKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 201
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K+ + + + V+D+ + KLKMSK E+K E KQ G+P IK +
Sbjct: 202 LFWSLLVKLCAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 261
Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+
Sbjct: 262 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAVRYAPAEHPLPLVIARGMDESAAQLRR 321
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + N+PI P +AR+L+K V I+ IP ++ VA ++ +
Sbjct: 322 FARDANVPIIGNPPVARALYK-VGIDEPIPQELFETVAAILRWV 364
>gi|310816836|ref|YP_003964800.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
Y25]
gi|308755571|gb|ADO43500.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
Y25]
Length = 360
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 1/340 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE A +K+ P+ KK+EDA +G+ P S + ++ ++ + L + + +
Sbjct: 1 MSEEAAGADKSHDPTPKKLEDARKKGDHPKSADLTIAAAYGGYYLGLTALGAGLALAAVN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLN 119
L LL A + S ++ LS + L V+P + + M + S QR V
Sbjct: 61 QLGGLLYHADGLATDAFSAPAHVVLRPLLSITSLAVLPLITVPAMLALLSLFAQRALVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ + P R+S K+ + + ++ F+KS K++L + L+ N+ + +
Sbjct: 121 PSKLVPKLSRISPLAVAKQKFGLAGIIEFLKSAAKLLLYTGALAWFLSTNFDEIAATPAM 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S+L + +L++ L+ L VLD W + +MS+QE+ DE+K+S G+
Sbjct: 181 PARSVLVFMGQMLAAMLLIALVISLVLGVLDAVWQQIRHLRDNRMSRQEVMDEMKESEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P + +++ + +++ +A++II NPTHYA+AL++ APV +AKG + +
Sbjct: 241 PHTRQQRRQRGIAIAMNQVAAEVPKASVIIVNPTHYAVALQWQPDSRRAPVCLAKGIDEV 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
A +MR+IA EH +PI +P AR+L+ Q + I Y
Sbjct: 301 ALRMRQIAQEHGVPIQSDPLTARALYAQTEVGQEISRQHY 340
>gi|224437175|ref|ZP_03658156.1| flagellar biosynthesis protein FlhB [Helicobacter cinaedi CCUG
18818]
gi|313143640|ref|ZP_07805833.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
gi|313128671|gb|EFR46288.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
Length = 377
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 173/352 (49%), Gaps = 9/352 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + KT+APS+ KI A EGN S E + F +L L + +
Sbjct: 1 MAD----EEKTQAPSTHKIAKAREEGNVSKSPELAGFFILLVGLGAMFLLLPFWVEHSQK 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + TQ D+ + L+ + L ++ P + M+ G+ + + Q +L+
Sbjct: 57 IFIHINSLITQEV--DVRMLGDLMLSIGLEVFIMLAPLFVALMVTGVIANIAQFGLLLSP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +++ GIK + S+ L++ +K+ + + + + +
Sbjct: 115 KAIKPKLSKINPITGIKNVISLKKLLDGFMITLKVFVAFIVGFAVFVSFFNELSSVSMSG 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + ++ ++L+ + V D +Q+ LKMS +E+KDE KQ +P
Sbjct: 175 LYGQIMWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY---IQTENDAPVLVAKGQN 297
IK + + + + ++MM+ A+++ITNPTHYA+ALRY + PV+VAKG +
Sbjct: 235 EIKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYGEKEIEKGMPPVVVAKGID 294
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+A +++ +A E+ I I E P LAR L++Q+ +N AIP + AV Q++ ++
Sbjct: 295 ELAIRIKGVAREYEIRIIENPPLARELYRQLDLNQAIPHDLFAAVGQVLQEV 346
>gi|217077044|ref|YP_002334760.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
gi|217036897|gb|ACJ75419.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
Length = 312
Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 84/310 (27%), Positives = 163/310 (52%), Gaps = 1/310 (0%)
Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
++ F I + S + + I + +I + L M
Sbjct: 1 MLGFAFLGRGIIIGLQSAV-AFFSKLPSYDSLTIQDLGIYTIEAFKGVIIDLIIFVGLVM 59
Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
+ GI + +Q ++ +K F +++ G+KR++S+ +L +KS +K+++VG +
Sbjct: 60 ITGIITGSLQTKFLITFKSIKLDFSKINPISGLKRMFSLRSLFELLKSILKLVIVGYVGY 119
Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
+ + N+ +L + + ++LI + + +++ D +S +++ ++
Sbjct: 120 LVVKSNWNKLLLATDTSVSEGALLIWDITFELLIKCGIALFIVSIADYFFSRYEYEKNIR 179
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
M+KQE+K+E K+ GNP IK +Q+ I H+MM+ AT+++TNPTH+A+A++Y
Sbjct: 180 MTKQEVKEEFKEVEGNPEIKRKQRQIMMQYSMHRMMQEVPEATVVVTNPTHFAVAIKYDS 239
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
E D P++VAKG + +A+K+++IA ++N+PI P LAR L+ V I IP Y+AVA
Sbjct: 240 DEMDVPIVVAKGADKLAQKIKEIARKNNVPILRNPPLARELYFSVEIGDEIPQKLYRAVA 299
Query: 344 QLIYKIYHKK 353
+++ +Y K
Sbjct: 300 EVLAYVYTLK 309
>gi|119953071|ref|YP_945280.1| flagellar biosynthesis protein FlhB [Borrelia turicatae 91E135]
gi|119861842|gb|AAX17610.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
Length = 373
Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 79/351 (22%), Positives = 159/351 (45%), Gaps = 6/351 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ +K + A EG S E ++ ++ F S Y +
Sbjct: 21 SEDEGRTELPTEQKKQKAREEGQVLKSTEINMAVTLCILFAVFFFMLSYFAYELMDVFRW 80
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ I + F L + + + + ++Q ++ +
Sbjct: 81 QAGKLPEIMSISIYSLGFAYIRSMLGYVIVFLLISFIVVFLI---NVVQVGFLITFKPIV 137
Query: 125 PSFKRVSLR--EGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P + RV+ + IK + S + N KS KI ++ I I L N + +
Sbjct: 138 PKWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISFIYYIMLRSNIGKISRMFEYSL 197
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ ++ ++ + +++LD + ++ LKM+K+E+K E K+ G+P+
Sbjct: 198 EDGISVILSLAYRICFFSVIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDPL 257
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++R + R + + +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 LRSRMRERMREILNANLKVTVPQADVVITNPEHFAVAIKWDSNTMLAPRVLAKGQDEIAF 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y
Sbjct: 318 VIKQIARENNIPVMENKPLARDLYANVDVNEEIPREYWEIVSKILVKVYSI 368
>gi|260858250|ref|YP_003232141.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
gi|17384638|emb|CAC81850.1| EscU protein [Escherichia coli]
gi|257756899|dbj|BAI28401.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
Length = 345
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 158/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D +G+ S E L + + + V ++ + S
Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + ++P L+ + + + + Q + + +KPS +
Sbjct: 63 LNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I +F N + L
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
++IP+ E+ +LARSL+K + I F++ VAQLI
Sbjct: 300 LYDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|163733157|ref|ZP_02140601.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
gi|161393692|gb|EDQ18017.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
Length = 362
Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 1/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ + +K+ +A +G S E +S L+ +L G+ + +
Sbjct: 1 MSAPDDEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLVAILVSGESGLSHLGA 60
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
L V++ + Q L + + ++P + + + + R V
Sbjct: 61 TLAVIIGQSAQIAPLFFDGAGTVPARGIIQATGSALLPIFVYPALAVMLALFATRGIVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ V+P +VS+ K Y L F+ SF K+++ I+ I L M+ +
Sbjct: 121 PSKVQPKLSKVSIISNAKNKYGRTGLFQFVLSFSKLMIYSAILAIFLYHRTSEMVAALHT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P + + LI +++ A + +D W + + K KMS++E+ DE K S G+
Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A+S ++ + A ++I NPTH+A+AL++ + APV VAKG +
Sbjct: 241 PYMKQERRQRAQSLAGSQVAVEVAAADVVIVNPTHFAVALKWERAPGQAPVCVAKGVDET 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R+IA E+ +PI +P AR+L + I P YKAVA I + +
Sbjct: 301 ALRIREIAKENAVPIHSDPPTARALHSTTNVGDQIAPEHYKAVAAAIRFAENMR 354
>gi|187918146|ref|YP_001883709.1| flagellar biosynthesis protein FlhB [Borrelia hermsii DAH]
gi|119860994|gb|AAX16789.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
Length = 373
Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 159/351 (45%), Gaps = 6/351 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ +K + A +G S E + ++ F S + +
Sbjct: 21 SEDEGRTELPTEQKKQKAREDGQVLKSTEINSAVTLFILFAVFFFMLSYFAQELMNVFRW 80
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
A + I L +I LL+ + +IQ ++ V
Sbjct: 81 ---QAGKLPEIMSVSIYALSFSYIKPMFGYMIVFLLISFIVSFLINVIQVGFLITFKPVV 137
Query: 125 PSFKRVSLR--EGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P + RV+ + IK + S + N KS KI ++ I I L N + +
Sbjct: 138 PRWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISLIYYIMLKSNIGKISRMSEYSL 197
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ ++ ++ + +++LD + ++ LKM+K+E+K E K+ G+P+
Sbjct: 198 EDGISVILSLAYRICFFSIIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDPL 257
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++R + R + + +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 LRSRMRERMREILNTNLRVTVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIAF 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y
Sbjct: 318 VIKQIARENNIPVMENKPLARELYANVDVNEEIPREYWEIVSKILVKVYSI 368
>gi|167567948|ref|ZP_02360864.1| type III secretion system protein [Burkholderia oklahomensis EO147]
gi|167573178|ref|ZP_02366052.1| type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 352
Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S +S+ A +++L+ P ++ S + L
Sbjct: 2 SDEKTEEPTEKKLRDARKDGQVSRSADFSDAASMTAAVLFLVAAADPLDDAMRSLVDCAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + L L A ++P L + GIG ++Q +++ V P+
Sbjct: 62 TFVSGD--HSLAEMTTRLYKLGGIALWAIVPYLCAAALAGIGGSILQVGLQVSMKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+S +G+KRI+S ++ +K VK V ++ ++ + + + +
Sbjct: 120 IGALSPADGLKRIFSPRTVIESVKMLVKAAAVFCVMWKTVEWLFPLIAGALYQPLPELSQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ + K+L++ A + D+ + + +++MSK E+K E K G+P++K +
Sbjct: 180 ISWEILTKLLMVAAGLFALVGAADMKLQHFMFMKQMRMSKDEVKREAKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ IAR +RA ++ NPTHYA+A+RY E+ P ++AKG + A +R+
Sbjct: 240 RRIARELAAAPPQRQVARANFVVVNPTHYAVAVRYASDEHPLPRVIAKGTDETAAALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A N+PI P +AR+LF +V + IP ++ +A ++ +
Sbjct: 300 AQNANVPIVGNPPVARALF-EVGVEEPIPEELFEIIAAILRWV 341
>gi|34498461|ref|NP_902676.1| flagellar biosynthesis protein FlhB [Chromobacterium violaceum ATCC
12472]
gi|34104316|gb|AAQ60675.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
12472]
Length = 379
Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 164/353 (46%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+KTE + +++ A +G P S++ + +L L + + +
Sbjct: 1 MAE-ARQDDKTEKATPQRLRKAREQGQVPRSKDLAAALGLLLALKMMFWLAPGWLDDFRQ 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ AS + + + + + L L +++ P ++ + + S L V L
Sbjct: 60 LFALAFASLSGQGALE-NSLSKLFGGTLLLLIKMLAPLAVIPLTMLLLS-LFPGGWVFVL 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N + P F+R++ + R+ S + KS K +++G ++ ++ S
Sbjct: 118 NQISPKFERMNPLAHLSRLASPKHASEIGKSIAKALVLGWLLYRVASDALHDFFALHSMP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A + L+ + + D+ + + +MSKQEIK+E K + G P
Sbjct: 178 LLPTLAGAADLLLSCLLKLAAVFLLFALADLPLQVFLFLKQQRMSKQEIKEEHKNTEGRP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++ R + + + + + +A A +II NP+HYA+AL+Y + +AP +VAKG + +A
Sbjct: 238 EVRQRIRQLQQQMAQRGVRKALPGADVIIVNPSHYAVALKYDENRAEAPFIVAKGVDEMA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R++A E + + P LAR+++ +N IP Y+AVAQ++ + K
Sbjct: 298 LYIRQLAEEMKLTVLPLPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350
>gi|167573406|ref|ZP_02366280.1| type III secretion system protein [Burkholderia oklahomensis C6786]
Length = 366
Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE PS KK++ +G S++ + ++ A + L S ++
Sbjct: 1 MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA+ +++P + ++ G+ S Q ++ L
Sbjct: 56 VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + ++ +
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+L ++++ ++ L D + + + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233
Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342
>gi|167566304|ref|ZP_02359220.1| type III secretion system protein [Burkholderia oklahomensis EO147]
Length = 372
Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE PS KK++ +G S++ + ++ A + L S ++
Sbjct: 1 MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA+ +++P + ++ G+ S Q ++ L
Sbjct: 56 VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + ++ +
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+L ++++ ++ L D + + + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233
Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342
>gi|149184191|ref|ZP_01862509.1| type III secretion exporter [Erythrobacter sp. SD-21]
gi|148831511|gb|EDL49944.1| type III secretion exporter [Erythrobacter sp. SD-21]
Length = 387
Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 162/353 (45%), Gaps = 3/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D P K AP+ K++ DA +G+ S++A + +L +L + +T
Sbjct: 1 MSE-DTPGEKNFAPTEKRLADAAKKGDVLRSKDAGTAAVMLFGGAWLALAGPWLLEGLTD 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L D S + LL L V + ++ + S L
Sbjct: 60 LARDAFL-FDASDLRDFS-VQGLLIEGLLLGVPAVFALAVPVIVVTLFSQLAFGRGRWVT 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+++K +R++ G+KR++ + L+ K +KI L+G+I + ++ N
Sbjct: 118 DNLKAKGQRINPMSGLKRMFGMQGLIEMGKGLLKIALLGSIAAAWWWNSMDVVIGLGRGN 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L A+ + ++ + + + +D+ + + +LKMS QE++DE K+S G+P
Sbjct: 178 LSAQLTAAWRAIVSLVFALSAGLVVIAFVDLPIQWLRQQKRLKMSHQEMRDENKESEGSP 237
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++ ++ R + A A +I NPTH+A+AL Y AP+L+AKG+ A
Sbjct: 238 EMRAARRQRQRDIATGSVAGAMREAQFVIANPTHFAVALTYDPARASAPILLAKGRGDKA 297
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
M+++A E ++P E P LARS++ I Y AVA +I ++ K
Sbjct: 298 LAMKELASELDLPTLEMPQLARSVYYTTRERQIICEDLYSAVASVIAYVFSLK 350
>gi|182440974|dbj|BAG24099.1| HrcU [Pseudomonas cichorii]
Length = 361
Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats.
Identities = 71/349 (20%), Positives = 156/349 (44%), Gaps = 13/349 (3%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A + +L G+ + + + +
Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKKLIMLPMME 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + ++T L ++P L + + + +Q P+ +K F+
Sbjct: 63 LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAVMRLAGGWVQFGPLFATEALKLDFE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ ++++S L N S K +++ ++ L + ++ + S
Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +KS
Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239
Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+A + A +++ NPTH+A+AL Y + P ++ KG++ A+++
Sbjct: 240 LAHEISQQPASAAPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A + +P+ LAR+L+++ + IP +AVAQ +Y
Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ----VYRL 343
>gi|322432982|ref|YP_004210231.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
gi|321165209|gb|ADW70913.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
Length = 367
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 175/351 (49%), Gaps = 8/351 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ NKTE + K+ + A +G S+E +I + L + T+
Sbjct: 1 MADS----NKTEEATPKRRQKAREQGQVARSKELPSVLAIAGAIGALCMMSQSAVTHWTT 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L +A+ LE I+F S+ R +IP L+ + + + L Q +
Sbjct: 57 FYRSMLDTASTSDLESNGPILF---WGSVEVFRWIIPVLMSATVLSVAAGLAQGGLSIAP 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ F+R + + +I+S+ + N +KS + + I + N+ ++ S
Sbjct: 114 EAMQLKFERFNPASKVGQIFSLAGVSNMLKSLLPFGAIAWIGEACIRSNWGMLIRASSFG 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + +V L + +D ++ + LKMSK+EIK+E KQ+ GNP
Sbjct: 174 LRQLVTTLGGMIFEVAWKSALVLVAWAGVDYLLTWKKMEGDLKMSKEEIKEEYKQNDGNP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+IK+R + + R + + + A + AT+I+TNPTHYA+ALRY AP +V+KG NL+A
Sbjct: 234 LIKSRIRRLQRRMRKKQALAAAATATVIVTNPTHYAVALRYTPE-MAAPEVVSKGMNLLA 292
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++++ + E+ I I E LA++L+K V + IP Y+AVA ++ ++
Sbjct: 293 QQIKALGAENGIMILENKPLAQALYKTVEVGEVIPSTLYQAVADILVIVFR 343
>gi|146305090|ref|YP_001185555.1| YscU/HrpY family type III secretion protein [Pseudomonas mendocina
ymp]
gi|145573291|gb|ABP82823.1| type III secretion protein, YscU/HrpY family [Pseudomonas mendocina
ymp]
Length = 359
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/347 (22%), Positives = 152/347 (43%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ S +L + + + + + + +
Sbjct: 3 EKTEKATPKQLRDAREKGQIAQSQDVSKLLILLMVSEITWSLATESVQRLQHLMALAINA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q L + +V +I + + M+ + Q + +K F
Sbjct: 63 TGQPFLRIVGQLVD---EAVTVLLGFLIFSVGVAMVMRLAGGWAQFGFLFAPKALKIDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K+++S NL N + S +K ++G + + L T++ +++ +
Sbjct: 120 KLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLANSDLDTYWQSL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L L + L +D G + KL+MSK ++K E KQS G+P++K +++
Sbjct: 180 MEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDPMVKGQRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A + A A +++ NPTHYA+AL Y + P++ KG++ A +
Sbjct: 240 LAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGEDEDALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + LAR+L+K V IP +AVA + +
Sbjct: 300 RAKKARIPVVQSVWLARTLYK-VNAGRHIPRPTLEAVAHIYQLVKQL 345
>gi|283786649|ref|YP_003366514.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
gi|282950103|emb|CBG89738.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
Length = 345
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 86/339 (25%), Positives = 157/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D +G+ S E L + + + V ++ + S
Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + V+P +L + + + + Q + + +KPS +
Sbjct: 63 LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I ++F N + L
Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F + + +L +V D + H+ K+KMSK E+K E K + GNP IK ++
Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ ++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+NIP+ E+ LARSL+K + I F++ VAQLI
Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|299066525|emb|CBJ37715.1| Flagellar biosynthetic protein flhB [Ralstonia solanacearum CMR15]
Length = 363
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 179/354 (50%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D K++ + K++ A +G SR+A + +++L V
Sbjct: 1 MADQDMD--KSQPATPYKLQKAREKGQVAKSRDAISAVTFTVAMVFLASQGWDTWRRVFQ 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LLA A + + + L+ L + L IP LL ++ + L+Q P+ +
Sbjct: 59 INRALLAHAGNVDATEPA-MWHLIDQLVRAVLGLGIPFLLALLLAAVAGNLLQTGPIFSF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP + R + +G KR++S+ L + ++ +K+IL+G + SL S
Sbjct: 118 EPIKPEWSRANPVQGFKRLFSLRTLFDGARALLKLILLGLVAYFSLKSLTPQFYHLASLP 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + + + + + +LD+ ++ ++ K++MS +E+KDE K G+P
Sbjct: 178 ASGFVRTLLDDLASLGLKMSAMLMFIALLDLIYTRREFSKKMRMSHKELKDEFKHREGDP 237
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
I++R + + + R + + T A ++ITNPTH A+ALRY+ E ++P LVAKG +
Sbjct: 238 RIRSRLRKLRHEMLKRSRSVSKTRDADVLITNPTHVAVALRYVHGEMESPQLVAKGAGAL 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A MRKIA +H IP+ + +LAR+LF + ++ ++ P Y VA++I ++ +
Sbjct: 298 AAVMRKIAAKHQIPVIQNRALARALFHSLEVDRSVQPALYADVARIIVWVFAMR 351
>gi|329901844|ref|ZP_08272932.1| Type III secretion inner membrane protein [Oxalobacteraceae
bacterium IMCC9480]
gi|327548981|gb|EGF33597.1| Type III secretion inner membrane protein [Oxalobacteraceae
bacterium IMCC9480]
Length = 365
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 79/345 (22%), Positives = 159/345 (46%), Gaps = 3/345 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G P+SR+ + ++ + L F ++ L L +
Sbjct: 3 EKTEQPTDKKLEDAREKGQVPVSRDMARLATFFVIGL-LAFVTEKLWHASIDSLFEL--A 59
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + ++T + + + I ++ Q +L+ ++P
Sbjct: 60 FLRIGAPFVPAMYEMVTVAGKLLLVIFGAIAITGTVVAIMAFWGQFGILLSAKALEPKLD 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +G+ +++S LV + S K +L+G ++ + + + T+L P + Y
Sbjct: 120 KLNPVQGMMQLFSKRKLVELVVSLAKAVLIGYVLYLVILDQLPTILKLSGGTPRDVYYGF 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + + + +++D+ H L MS EIK E K+S G+P++K +K
Sbjct: 180 VEMLFSIFKIAVGICFAFSLVDLVSQRHFHTKSLMMSMDEIKREYKESEGDPLVKGTRKQ 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+A+ + T A ++ NPTH+A+AL Y P+++AKG++ A M A+
Sbjct: 240 LAQEWANEEPASRTQDANAVVVNPTHFAVALFYDFDAPSVPMVLAKGKDETAHAMIARAH 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++ IP+ LAR+L+ + IP Y++VA + I +
Sbjct: 300 QYKIPVIRHVWLARTLYATAKPDHPIPKASYESVAHVYAVIQEMR 344
>gi|300693811|ref|YP_003749784.1| hypersensitivity response secretion protein hrcu, type III
secretion exporter [Ralstonia solanacearum PSI07]
gi|299075848|emb|CBJ35157.1| Hypersensitivity response secretion protein hrcU, Type III
secretion exporter [Ralstonia solanacearum PSI07]
Length = 357
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAAVLLSGCLLLALTASFFGERWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ R + + ++H +L + +P +F + + Q VL+ V+
Sbjct: 62 DVDSSR--HPVMTLKQTISHFALQLVLMTLPVGFVFALIAWIATWAQTGIVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K V I + ++ + I
Sbjct: 120 MSAINPASGLKRIFSLRSMIDLVKMVIKAAAVAAAIWKLILILMPAIVGAAYQSVLDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIR-HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY+ E P ++AKG + A +R+
Sbjct: 240 KKLARELAEDAKPKQSVAGAQAVVVNPTHYAVAIRYVPEEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LAR+L++ V + +P ++ VA+++ +
Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGPVPEPLFETVAEVLAWV 342
>gi|51103122|gb|AAT96265.1| hrcU [Pseudomonas viridiflava]
Length = 361
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 151/349 (43%), Gaps = 13/349 (3%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A + +L G+ + + + + L
Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + LT ++P L + + +Q P+ + +K F+
Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S L N S K +++ ++ + L ++ + S
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ L + L LD + + +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239
Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+AR A +++ NPTH+A+AL Y + P ++ KG++ A+++
Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A E +P+ LAR+L+++ + IP +AVAQ +Y
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ----VYRL 343
>gi|297621085|ref|YP_003709222.1| type III secretion inner membrane protein SctU [Waddlia
chondrophila WSU 86-1044]
gi|297376386|gb|ADI38216.1| type III secretion inner membrane protein SctU [Waddlia
chondrophila WSU 86-1044]
Length = 375
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 76/347 (21%), Positives = 151/347 (43%), Gaps = 3/347 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK+ DA +G S++ + + + +L V +
Sbjct: 2 GEKTEKATPKKLRDAKKKGQVAKSQDFPSAFTFVTSIALILGLSGFMFSKVGGFIESTFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ ++ + I + L+ VIP + + G+ + PV K
Sbjct: 62 LVSHDEISVV--IPTMFREALLTIFSTVIPVMAAVALMGVVVNFLSVGPVWATEVFKFDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
K+ + +K + I LV +KS +KI + +I + ++ + + S L
Sbjct: 120 KKFDPIQNLKSKFKIKTLVELIKSCLKIGIAAWLIYGVMYKSLPVLTQAATMPIESSLLI 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ +V+I + +F + VLD + + + ++ M K E+K E K + G+P IK+++K
Sbjct: 180 FKAFLMEVVIKVGIFFLVVAVLDFAYQKYNFGKEMMMEKFEVKQEYKNTEGDPQIKSKRK 239
Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
A+ A +A +ITNP A+A+ Y + + AP ++ G+ ++A+++
Sbjct: 240 QTAQEIAYSDGPAAAVQKAAAVITNPVQLAIAVGYNREIDAAPYILVMGEGILAERIVHY 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +PI LA L+ + I IP Y+A+A+++ I +
Sbjct: 300 ANKSEVPIVRNIELAHKLWLEGEIFEYIPEDTYEAMAEILRWINSLE 346
>gi|51103164|gb|AAT96306.1| HrcU [Pseudomonas viridiflava]
Length = 361
Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 151/349 (43%), Gaps = 13/349 (3%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A + +L G+ + + + + L
Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + LT ++P L + + +Q P+ + +K F+
Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S L N S K +++ ++ + L ++ + S
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ L + L LD + + +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239
Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+AR A +++ NPTH+A+AL Y + P ++ KG++ A+++
Sbjct: 240 LAREITDQPGSAVPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDAEAREL 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A E +P+ LAR+L+++ + IP +AVAQ +Y
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ----VYRL 343
>gi|254499123|ref|ZP_05111813.1| putative flagellar biosynthetic protein FlhB [Legionella
drancourtii LLAP12]
gi|254351662|gb|EET10507.1| putative flagellar biosynthetic protein FlhB [Legionella
drancourtii LLAP12]
Length = 361
Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 165/346 (47%), Gaps = 2/346 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ A +G S E + S+L L + + ++ + L +L
Sbjct: 13 EKTEKATPYKLQKAKEKGQVSKSAELTTCISLLVLLGMMSALWPKQLHEIQEMLRHILYL 72
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A Q + + +I L + + +P L ++ I + L Q V + + P FK
Sbjct: 73 AAQMQ-FSLDNINHLHQFILMQLLHQWLPFALAGVLAIILANLTQSGIVWSTTPLVPDFK 131
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+++ +G K+++SI KS +K++ + + +L
Sbjct: 132 RLNIVQGFKKLFSIKTCFEAAKSTLKLMSTFIFLFFAFKHQLTNILPLALTPTAQHPGLM 191
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ +LL ++ L VLD ++ ++ +MSKQE+KDE KQ G+P IK++ K
Sbjct: 192 MHFLLSLIFQLLLLLSLLAVLDKFYTRWKFAKDQRMSKQEVKDEYKQREGDPKIKSKIKQ 251
Query: 249 IARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ + + ++ A +IITNPTH A+AL+Y +T AP +V K Q + +++++A
Sbjct: 252 LQQQLRQKTASLKQVKTADVIITNPTHLAIALKYDRTSMPAPKVVCKAQGEMVSQVKELA 311
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+H +PI E S AR L+ V +N I Y A + +IY ++
Sbjct: 312 RKHGVPIIENKSFARLLYHSVELNQWINKELYPFAAAIFKEIYARR 357
>gi|269138239|ref|YP_003294939.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
gi|61743012|gb|AAX55232.1| EsaU [Edwardsiella tarda]
gi|267983899|gb|ACY83728.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
gi|304558282|gb|ADM40946.1| EsaU [Edwardsiella tarda FL6-60]
Length = 352
Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++K++ DA EG S++ S + L++++ ++ + LA+
Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
L I L + R V L + I + L++ + + PS +
Sbjct: 63 L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K++ S+ L K +KI+++G T + + + A+ + L+
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++LL A V+D Y +L MS ++IK E K + G+P IK R++
Sbjct: 180 SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + +A
Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
IP+ E LAR+L +P + AVAQL+
Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLLR 338
>gi|15723910|gb|AAL06357.1|AF311901_9 EscU [Citrobacter rodentium]
Length = 345
Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 157/339 (46%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D +G+ S E L + + + V ++ + S
Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L I I L + V+P +L + + + + Q + + +KPS +
Sbjct: 63 LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++S++ +K I+S+ ++ +KS K++++ I ++F N + L
Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
F + + +L +V D + H+ K+KMSK E++ E K + GNP IK ++
Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVEREAKDTDGNPEIKGERRR 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + ++T+I+ NPTH A+ L Y E P+++ ++ A ++ K+A
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+NIP+ E+ LARSL+K + I F++ VAQLI
Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIR 338
>gi|55981991|gb|AAV69421.1| EsaU [Edwardsiella tarda]
Length = 352
Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats.
Identities = 82/339 (24%), Positives = 152/339 (44%), Gaps = 3/339 (0%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++K++ DA EG S++ S + L++++ ++ + LA+
Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
L I L + R V L + I + L++ + + PS +
Sbjct: 63 L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K++ S+ L K +KI+++G T + + + A+ + L+
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGPTFTYFIRGYAASFAQLVRADAEAGLWVT 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++LL A ++D Y +L MS ++IK E K + G+P IK R++
Sbjct: 180 SKMALWMWGILLLLTALFAIVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + +A
Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
IP+ E LAR+L +P + AVAQL+
Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLLR 338
>gi|255523688|ref|ZP_05390654.1| type III secretion exporter [Clostridium carboxidivorans P7]
gi|296186692|ref|ZP_06855094.1| putative flagellar biosynthetic protein FlhB [Clostridium
carboxidivorans P7]
gi|255512557|gb|EET88831.1| type III secretion exporter [Clostridium carboxidivorans P7]
gi|296048729|gb|EFG88161.1| putative flagellar biosynthetic protein FlhB [Clostridium
carboxidivorans P7]
Length = 283
Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats.
Identities = 81/265 (30%), Positives = 146/265 (55%), Gaps = 1/265 (0%)
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
+ +P +L M G+ + +Q ++ +KP F +++ G KRI+S+ ++
Sbjct: 17 WRIGIIFLPVVLPIMFMGVLANFLQTGALITSEPLKPDFSKLNPINGFKRIFSMRTVMEL 76
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
K + +VG + + +NY +L S N ++ + I + + + +
Sbjct: 77 FKDLAMVSIVGFVGYKFVKDNYEYILTLGSLNAQAVAAAVSKLTINIFFRITILMIIIAL 136
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
+D + Q+ LKMSKQE+K+E KQ G+P IK++ K R +MM+ +AT++
Sbjct: 137 IDYVYQRFQFNKDLKMSKQEVKEEYKQDEGDPQIKSKIKQKQREMATRRMMQEVPKATVV 196
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+TNPTH A+AL+Y + N APV+ AKG + +A K+++IA E+++PI E LAR ++ +V
Sbjct: 197 VTNPTHIAVALKYQEGLN-APVVAAKGADRVALKIKEIAKENDVPIIENKPLARLMYSEV 255
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
++ IP Y+AVA+++ +Y K
Sbjct: 256 ELDEEIPMDMYEAVAEILALVYKIK 280
>gi|118581843|ref|YP_903093.1| flagellar biosynthesis protein FlhB [Pelobacter propionicus DSM
2379]
gi|118504553|gb|ABL01036.1| type III secretion exporter [Pelobacter propionicus DSM 2379]
Length = 324
Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats.
Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 4/322 (1%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ +++ +I L F S + S+ +L +L + ++ L+ L
Sbjct: 2 MTSTFTLMVGMICLYVFGSFMMSSIERQSEEILEGVGSFELTE-GNVYLLVLKLFFLILV 60
Query: 94 LVIPGLLLFMMFGIGSYLIQ--RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
++ P ++ M+ I S++IQ V +++ G KR+++ LV +KS
Sbjct: 61 VLAPLVVTVMLTSIASHVIQDGGRFEFQWQRVTFDITKLNPLNGFKRLFNKTALVEILKS 120
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
F+K++++G I L + + A+ IL + K+++ + +++LD+
Sbjct: 121 FLKLVVIGWIAYRVLKDEVQNIALLADADMVGILAYMGRVAFKIVVHTCGIMLIISILDL 180
Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
+ + LKM+KQE+KDE K+ NP IK + K + + +M + A ++ITN
Sbjct: 181 MYVKWNYLDGLKMTKQEVKDEHKEQE-NPEIKGQIKKMQYQAAKRRMTKIIPTADVVITN 239
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTHYA+AL+Y + APV+VAKG +++A+ ++KIA E ++ + E LAR L+ QV N
Sbjct: 240 PTHYAIALKYDRQRMIAPVVVAKGVDIMAQAIKKIAQESSVTLVENRFLARELYDQVEEN 299
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
AIP Y AVA+++ +Y K
Sbjct: 300 EAIPETLYAAVAEVLAYVYRLK 321
>gi|94496754|ref|ZP_01303329.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
gi|94423767|gb|EAT08793.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
Length = 375
Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 14/360 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +KTE P+ K++ DA +G+ S++ ++ + LLF +T
Sbjct: 1 MAQKNDGGDKTEKPTPKRLRDARRKGDIAKSKDVGPALGMIMWFLLLLFAAGHAGAQITG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L +AT + + + L L + + L + G+ + +Q ++
Sbjct: 61 LMRDTLGTATSMPFDAAAPV--LGWAALLVLVSVSLLILGPAALIGVIAEFVQVGALVTT 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KPS +++ EG+KR++S++NLV +K+ K L+ TI + L + + + A
Sbjct: 119 EKLKPSLDKLNPIEGLKRMFSMDNLVELLKTVAKATLILTIAGVILWRSADGFVSLVQAA 178
Query: 181 PHSILYHAFFTV------------RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
S + H V ++ + D W+ H + KL+MS+++
Sbjct: 179 GWSPVDHHGDQVASAMLALIRSVSIQLFAWTCAIFLLVAAADRAWAQHSFIKKLRMSRRD 238
Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
IK E K + G+P+++ +++ + + A RA +++TNPTH A+AL Y +
Sbjct: 239 IKQEHKDNEGDPMLRAQRRQLHEEWANQNAVAAAGRANVLLTNPTHLAIALDYDPEDCPV 298
Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
P++ AKG+ +A MR A +PI LAR ++ + + IP + A+A++I
Sbjct: 299 PMVAAKGEGPLAAAMRAEAEREGVPIVRNIGLARGVWGESEVGGPIPRDRFDAIAEIILW 358
>gi|225164042|ref|ZP_03726327.1| type III secretion exporter [Opitutaceae bacterium TAV2]
gi|224801348|gb|EEG19659.1| type III secretion exporter [Opitutaceae bacterium TAV2]
Length = 369
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 168/351 (47%), Gaps = 2/351 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D KTE PS K++ +A G + E + + A L G V
Sbjct: 1 MAEQDQDQ-KTELPSEKRLSEAYERGQFAKTPELGIVFMLAAAFGALSMACEDGARRVAE 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ ++ + + +++ + + P ++ + + S IQ +
Sbjct: 60 YATGIFEQLHTVRISS-GLVPAPVAMGAVTFAGALAPLMIASVGAALLSGGIQTGFRVTP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++++ G R++S N LV+ F+K+ ++ + ++ L
Sbjct: 119 KALGFKPEKLNPVTGFGRVFSKNTLVHGGIDFLKVSVIAFSLWLAARTLLGDPLFTAPVE 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ ++ +L +LL + + + + + + + +L M++QE+K+E +QS G+
Sbjct: 179 TAYLGEFIHRSLMALLARLLLAMGIIAAISYAYEWFKTHRELMMTRQEVKEERRQSDGDA 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K+ + +AR +R +M+ A A +++TNPTHYA+AL+Y + + APV++AKG +A
Sbjct: 239 LVKSALRRMARRLMRRQMLAAVPTADVVVTNPTHYAVALKYERGIDKAPVVLAKGDRRLA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+++ IA EH +P E+ ++AR LF + IP Y+AVA ++ +Y
Sbjct: 299 LRIKAIAAEHEVPTVEDRAVARLLFATGEVGKPIPGELYQAVAGILAMVYR 349
>gi|294828141|ref|NP_712789.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
Lai str. 56601]
gi|293385988|gb|AAN49807.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
Lai str. 56601]
Length = 646
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 2/326 (0%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
+GN P S E +LA +I + L + R + LL
Sbjct: 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELL 374
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
+ S L+ P L + ++ I + Q + + +F R+ K + +
Sbjct: 375 KNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRPNFK-KVLPTRQT 433
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L N KS K+ L+ + I +++++F +L + + K+ +++ + +
Sbjct: 434 LFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILL 493
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK-MMEATS 263
++++D + +++ LKM+ E K E K+S G+ ++ R++ +AR + + M+
Sbjct: 494 AISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVP 553
Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
A ++ITNPTH+A+AL Y + AP+++AKG + A + +IA E+ +P E+ AR
Sbjct: 554 EADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARG 613
Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKI 349
L+++V + + +P FY+A+A ++ ++
Sbjct: 614 LYEEVELGAEVPQQFYRAIATILSRL 639
>gi|45657253|ref|YP_001339.1| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600491|gb|AAS69976.1| flagellar protein [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
Length = 649
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 2/326 (0%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
+GN P S E +LA +I + L + R + LL
Sbjct: 318 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELL 377
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
+ S L+ P L + ++ I + Q + + +F R+ K + +
Sbjct: 378 KNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRPNFK-KVLPTRQT 436
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L N KS K+ L+ + I +++++F +L + + K+ +++ + +
Sbjct: 437 LFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILL 496
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK-MMEATS 263
++++D + +++ LKM+ E K E K+S G+ ++ R++ +AR + + M+
Sbjct: 497 AISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVP 556
Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
A ++ITNPTH+A+AL Y + AP+++AKG + A + +IA E+ +P E+ AR
Sbjct: 557 EADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARG 616
Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKI 349
L+++V + + +P FY+A+A ++ ++
Sbjct: 617 LYEEVELGAEVPQQFYRAIATILSRL 642
>gi|300310132|ref|YP_003774224.1| type III secretion HrcU transmembrane protein [Herbaspirillum
seropedicae SmR1]
gi|300072917|gb|ADJ62316.1| type III secretion HrcU transmembrane protein [Herbaspirillum
seropedicae SmR1]
Length = 371
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 82/346 (23%), Positives = 161/346 (46%), Gaps = 3/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D+K E P+ KKIEDA +G +SR+ + +++A + L S +V + + +
Sbjct: 2 SDDKNEEPTDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLWRGAVFNLMEGGV 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
Q + + + LT + + L++ + + + Q ++ ++P
Sbjct: 62 LGVGQ---DFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIATEALEPK 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+++ GIK+I+S LV + K L+ ++ ++ + P +
Sbjct: 119 LDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDVYE 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R + +I++ L V+D + L M ++EIK E K+S G+P++K ++
Sbjct: 179 AFVTLLRNIFHLIIVVCLVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGDPMVKGQR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR T +A ++ NPTH+A+A+ Y E P+++AKG++ IA+ M
Sbjct: 239 KQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQAMIAR 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A+ IP+ LAR+L+ + +P Y+AVAQ+ ++
Sbjct: 299 AHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQVYAVVHEL 344
>gi|27904722|ref|NP_777848.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395823|sp|Q89AN6|FLHB_BUCBP RecName: Full=Flagellar biosynthetic protein flhB
gi|27904119|gb|AAO26953.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 382
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 83/350 (23%), Positives = 176/350 (50%), Gaps = 1/350 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D + KTE+P+S +++ + G+ RE + LI ++ I ++ +
Sbjct: 3 HDESEEKTESPTSYRLKISKETGHNRYYRELYSLLILTITLINF-WYNQRLILTLLKRIF 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + ++ + + ++ + M+ + +I N +
Sbjct: 62 YLSFTFNNSIFQNDLFLDHNFLMIFQDNLISLLGIIFFPMLIFMFPAMILCCSNFNFKFI 121
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
K +++ G K ++SI ++V+ K+ +KI+ V ++ + +++ + + +
Sbjct: 122 KFDINKLNPILGFKNVFSIKSIVDLFKTVLKIVFVSIVVYLFISKYFLKVCFSSNFTFDY 181
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
IL ++ T+ + IL+F + ++D+ W + +Y L+M+++E+ DE+K GNP IK
Sbjct: 182 ILNYSVRTIFLCFLTILIFFIPIIIIDLFWEKYNFYRSLRMTRKEVSDELKNMEGNPRIK 241
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+R + I S +M+ S++ +I+ NP HYA+A++Y +T AP ++AKG + +A K+
Sbjct: 242 SRIRQIMFSISNRRMLSNVSKSDVIVVNPMHYAIAIKYNETNMYAPKILAKGIDELAIKI 301
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+KI H+IP SLA L+ + + IP V Y+AVA+++ ++ +
Sbjct: 302 KKIGNNHSIPTLVSHSLAHVLYYRTEVGEYIPSVLYEAVAEVLAWVWKIR 351
>gi|251789490|ref|YP_003004211.1| YscU/HrpY family type III secretion protein [Dickeya zeae Ech1591]
gi|247538111|gb|ACT06732.1| type III secretion protein, YscU/HrpY family [Dickeya zeae Ech1591]
Length = 361
Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 157/341 (46%), Gaps = 8/341 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A L +L G+ + + + + L+
Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + + + + + ++ I IQ P+ + +K F
Sbjct: 63 ISDPFGHAADEV---FSEALALLATFCLLTISVALLMRIVGGWIQYGPLFAVEALKLDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ IK+++++ L + + + +K +G + + +T +++ + +
Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELAYGDLTAFWKGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ V L + L V D G + + + +MS ++I++E K S G+P +K +KS
Sbjct: 180 ENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A+ + ++ A +++ NPTHYA+AL Y + P ++ KG++ A+ +
Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDHARALI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
A++ +P+ LAR+L++ VP IP + VAQ+
Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRDTLQPVAQV 339
>gi|51103002|gb|AAT96149.1| HrcU [Pseudomonas viridiflava]
gi|51103057|gb|AAT96203.1| HrcU [Pseudomonas viridiflava]
Length = 359
Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats.
Identities = 72/347 (20%), Positives = 148/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMAVSEVTLGLADESVNRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ L + H L + + + L M+ + S +Q + +K
Sbjct: 63 IDRSFLSAVEH---LTSEGLSVLISFTLCSVGLAMLMRLISSWVQVGFLFAPKALKIDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N+ + S +K + + + + T++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNISTLLLSILKAVAIAATLYSQVKPALGTLIILANSDLVTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + + D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLAIAMADFALQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LSHEILNQEPTAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEDALDLIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A IP+ + LAR+L++ V + IP +AV + +
Sbjct: 300 RAKRAGIPVVQSIWLARTLYR-VQVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|237799998|ref|ZP_04588459.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022853|gb|EGI02910.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 359
Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats.
Identities = 70/347 (20%), Positives = 147/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KT+ + K++ DA +G S++ +LA L + + + L +
Sbjct: 3 EKTQKATPKQLRDAREKGQVGQSQDIGKLLVLLAVSEVTLSLADESVNRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + I + + L M+ + S +Q + +K
Sbjct: 63 IDRPFMSSVELIAN---EGFSVLLSFTLCSVGLAMLMRLISSWMQIGFLFAPKALKIDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N+ N + S +K + ++ + +++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNITNLLMSILKASAIAAVLYTQVKPELGSLVLLANSDLQTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + + D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 LELFRHILRVILGLLLVIAMADFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + +
Sbjct: 240 LSHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDDEALALIE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + LAR+L+K V IP VA + +
Sbjct: 300 RAKKAGIPVVQNIWLARTLYK-VKPGKYIPRPTLLIVAHIYKVVRQL 345
>gi|116328495|ref|YP_798215.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331225|ref|YP_800943.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121239|gb|ABJ79282.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124914|gb|ABJ76185.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 510
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 76/326 (23%), Positives = 157/326 (48%), Gaps = 2/326 (0%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
+GN P S E +LA +I + L + QR + LL
Sbjct: 179 KGNVPKSPELPAAVVLLAGVILIYLMGEYFFMRTFYILRKYIHGVGQRTDISSESVTELL 238
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
+ S L+ P L + + + + Q + + +F R+ K + +
Sbjct: 239 KNASTDLFTLLWPLLGITFVGAVIGNVAQVGFIFTPRALSFNFSRIRPNFK-KVLPTRQT 297
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L N KS K+ L+ + I +++++F++L + + K+ +++ + +
Sbjct: 298 LFNLGKSLAKVGLIAWVSYIIISKDFFSILISGEMGLEQAVALVMSSSFKIFLVVGIILL 357
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK-MMEATS 263
++++D + +++ LKM+ E K E K+S G+ ++ R++ +AR + + M+
Sbjct: 358 AISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVP 417
Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
A ++ITNPTH+A+AL Y + AP+++AKG + A + +IA E+ +P E+ AR
Sbjct: 418 EADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRIQARG 477
Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKI 349
L+++V + + +P FY+A+A ++ ++
Sbjct: 478 LYEEVELGAEVPQQFYRAIATILSRL 503
>gi|83717264|ref|YP_438947.1| type III secretion system protein HrcU [Burkholderia thailandensis
E264]
gi|257142051|ref|ZP_05590313.1| type III secretion system protein HrcU [Burkholderia thailandensis
E264]
gi|83651089|gb|ABC35153.1| type III secretion inner membrane protein [Burkholderia
thailandensis E264]
Length = 360
Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats.
Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ +K++ A +G S++ + +++ A + L + ++
Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA ++P + ++ G+ S Q ++ L
Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F +S GIKRI+S +L+ +K VK I++ +I +T + ++ +
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSTKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+ ++ L +A D S + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|167615475|ref|ZP_02384110.1| type III secretion system protein [Burkholderia thailandensis Bt4]
Length = 360
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 85/350 (24%), Positives = 169/350 (48%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ +K++ A +G S++ + +++ A + L + ++
Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA ++P + ++ G+ S Q ++ L
Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F +S GIKRI+S+ +L+ +K VK I++ +I +T + ++ +
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+ ++ L +A D S + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|331005442|ref|ZP_08328821.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC1989]
gi|330420718|gb|EGG95005.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
IMCC1989]
Length = 361
Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 187/350 (53%), Gaps = 3/350 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + +TE P+ K+++A + G S E + ++ + +++L + I +
Sbjct: 1 MSEEQS-QERTEKPTPFKLKEARDRGQVSKSTELNSLFAL-SSVLFLSYLVGEQIVNSQL 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + S + L + + P + L + I S L+Q P+L+
Sbjct: 59 LLSKKLLTYDFHTIGSTSGALLLFEQIKDGLINIYWPLIFLIIFISIVSNLVQTGPILSF 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +R++ +G K+I+S + F+K+ +K+IL T+ I++ E +L+ I
Sbjct: 119 FPLKPDTQRLNPIKGFKKIFSKRMIYEFIKTTIKLILFATVAYITIDELLIVLLNLIDIQ 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P S + + I +LL + ++D ++ ++ +++MS ++IKDE+K+ G+P
Sbjct: 179 PESYPLKLVTFAQSLGIKMLLVVLLAALVDFAYTRWEFIQQMQMSHKDIKDEVKKREGDP 238
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
+I+++++ + + + + K + A ++ITNPTH A+AL++ Q E +P + AKG +
Sbjct: 239 LIRSKRRELQKEAVEKSKSLSNVPDADVLITNPTHLAIALKFNQQEMTSPHVTAKGSGEL 298
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A++M+ +A +H + I E LARS++ + INSAI +Y+ +A++ +
Sbjct: 299 AQQMKILARKHKVAIVENKPLARSMYNRTRINSAISEEWYQPIAKIYAWL 348
>gi|51103205|gb|AAT96346.1| HrcU [Pseudomonas viridiflava]
Length = 361
Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 151/349 (43%), Gaps = 13/349 (3%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A + +L G+ + + + + L
Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + LT ++P L + + +Q P+ + +K F+
Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S L N S K +++ ++ + L ++ + S
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ L + L LD + + +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAALDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239
Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+AR A +++ NPTH+A+AL Y + P ++ KG++ A+++
Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ A E +P+ LAR+L+++ + IP +AVAQ +Y
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ----VYRL 343
>gi|291519578|emb|CBK74799.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio
fibrisolvens 16/4]
Length = 239
Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats.
Identities = 78/234 (33%), Positives = 133/234 (56%)
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ ++P + + G KRI+S +++VN + + KI LV I +S+ +
Sbjct: 1 MKPLQPKLSKFNPINGFKRIFSKDSIVNLLMALAKIALVCYISYVSIRNQANNIFILYDI 60
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
S L F + V I I + L +D + ++ + +KM+KQE+KDE K + G+
Sbjct: 61 GLKSALSLIFTLICDVGIKISIVYIILGFIDYAYQKWKFTNDMKMTKQEVKDEYKNTEGD 120
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK RQK R +MM+ +A ++ITNPTH A+A+ Y T+++AP ++AKG++ +
Sbjct: 121 PQIKGRQKQKMMESSRRRMMQNVPQADVVITNPTHIAVAILYDNTKDEAPRVIAKGEDYL 180
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A K+++ A + +PI E LAR+L+ V I+ IPP Y+AVA+++ +Y +K
Sbjct: 181 ALKIKEAAKDSGVPIVENKPLARALYATVEIDEIIPPELYQAVAEILAVVYTQK 234
>gi|317010987|gb|ADU84734.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
SouthAfrica7]
Length = 358
Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLILPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KAIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ LKM+KQE+KDE KQ G+P
Sbjct: 175 LKGQLLWFKNKALLLISSLLFLFFVLAFIDLVIKRRQYTHSLKMTKQEVKDEYKQQEGSP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ P++VAKG + +A
Sbjct: 235 EIKAKIRQMMMKNAANKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPIVVAKGTDHLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|237508977|ref|ZP_04521692.1| type III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|235001182|gb|EEP50606.1| type III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 352
Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADYFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|53722427|ref|YP_111412.1| type III secretion system protein HrcU [Burkholderia pseudomallei
K96243]
gi|52212841|emb|CAH38875.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
Length = 352
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|189911977|ref|YP_001963532.1| endoflagellar biosynthesis protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776653|gb|ABZ94954.1| Endoflagellar biosynthesis protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
Length = 444
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 3/322 (0%)
Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
GN P S E + +L L I + + L + +L+
Sbjct: 112 GNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKYLPMGMHHERFGAEEFRVILS 171
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS-INN 144
+S L+ P L + ++F I ++Q + + + F R+S KR+
Sbjct: 172 GVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSFRFDRISP--NFKRVLPNRQT 229
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L N +KS K++L+G I I ++ ++ +L + + ++ K+++ L +
Sbjct: 230 LFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQAITLVTYSGFKIMMAAGLLLL 289
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
+ V D + ++ LK + E K E+K+ G+P++KNR+ +AR ++ M+ +
Sbjct: 290 GIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKNRRMQLARDMMQGNMLREVPK 349
Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
A ++ITNPTHY++AL Y + AP ++AKG+N +A ++R+IA E+++PI E P AR L
Sbjct: 350 ADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIRRIARENDVPIVESPKQARLL 409
Query: 325 FKQVPINSAIPPVFYKAVAQLI 346
+ QV + IP F++AV Q++
Sbjct: 410 YAQVEVGDEIPQEFFQAVVQIL 431
>gi|167577327|ref|ZP_02370201.1| type III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 360
Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats.
Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ +K++ A +G S++ + +++ A + L + ++
Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + + L L+ SA ++P + ++ G+ S Q ++ L
Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
V P F +S GIKRI+S+ +L+ +K VK I++ +I +T + ++
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASAYEA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + + K+ ++ L +A D S + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233
Query: 241 IIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K +
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|203284193|ref|YP_002221933.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|201083636|gb|ACH93227.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
Length = 373
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 162/351 (46%), Gaps = 6/351 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ ++ + A EG S E + S+ F S +
Sbjct: 21 SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSYFAQELMDIFKW 80
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
A++ I L R V ++ + G ++Q V+ L +
Sbjct: 81 ---QASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIM 137
Query: 125 PSFKRVSLR--EGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P + R++ + +K + S++ N KS +KI ++ I I L N + +
Sbjct: 138 PKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYSL 197
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ ++ ++ + L+VLD + ++ LKM+K+EIK E K+ G+P+
Sbjct: 198 EGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDPL 257
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++R + R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 LRSRMRERMREILNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIAF 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y
Sbjct: 318 VIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVYSI 368
>gi|126442638|ref|YP_001062991.1| type III secretion system protein HrcU [Burkholderia pseudomallei
668]
gi|254194161|ref|ZP_04900593.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
gi|254301605|ref|ZP_04969049.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|126222129|gb|ABN85634.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 668]
gi|157811543|gb|EDO88713.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|169650912|gb|EDS83605.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
Length = 352
Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|297379968|gb|ADI34855.1| flagellar biosynthetic protein FlhB [Helicobacter pylori v225d]
Length = 358
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|170738283|ref|YP_001779543.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
gi|169820471|gb|ACA95053.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
Length = 357
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/346 (22%), Positives = 164/346 (47%), Gaps = 6/346 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ +K+++A +G S + +L L F + P + ++ ++ +
Sbjct: 2 SDEKTEQPTRRKLKEARKKGTVAKSVDLVAAVLVLVSLALFTFAWHPLLDALHQNISRAI 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + +L H + + + + S Q ++ + V P
Sbjct: 62 DFCGSER--SMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQVSFDPVMPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
R+S G+K+I+S L++ +K VK +++ + + + + ++ ++
Sbjct: 120 MDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSLFPLITSAMAEPLAALSQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K+L + + V+D + +MSK E+K E+K+ G P +K+ +
Sbjct: 180 ILWHALLKLLFAAAVLFLVVGVVDWKIQHWLMMRAQRMSKDEVKRELKEREGEPKLKHER 239
Query: 247 KSIARSRIR---HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ A+ + + A RA +++ NPTHYA+ALRY++ E PV++AKG + A+++
Sbjct: 240 RKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLPVVLAKGIDDAAREI 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
R +A + +PI P +AR+L+ +V + IP ++ VA ++ +
Sbjct: 300 RALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAILRWV 344
>gi|134282484|ref|ZP_01769188.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
gi|134246041|gb|EBA46131.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
Length = 352
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|149926083|ref|ZP_01914346.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
gi|149825371|gb|EDM84582.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
Length = 353
Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 80/346 (23%), Positives = 158/346 (45%), Gaps = 4/346 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P+ KK++DA +G +S++A + +L ++ + + L +++
Sbjct: 2 SGEKTEKPTQKKLDDARKKGQVSVSKDAQILFKLLMFYMFFFWLSQDYAARFSELLDLIV 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ I + L ++ + +P + + + Q +++ + PS
Sbjct: 62 TAGLKQPWTFSESIFSMFFDLFVA---ITVPLVAVCAIAATLITWAQIGFLVSPEALTPS 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
FK+ IK ++S +LV + S VK++++ + + +N M+ A
Sbjct: 119 FKKFDAVSNIKNMFSKKSLVQLLLSIVKVLILSVVGYLVFKDNMGDMIYSYRAGLTQFFD 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ ++ + L+ + V+D Y L+MS Q+I DE KQS GNP +K R
Sbjct: 179 VLVHVLKAIIFVSLIIFMVIAVIDWSVEYMHHIKNLRMSHQDIADERKQSMGNPQLKQRM 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K RS + + + + A I+ NPTH ++AL Y ++D P ++A G + A ++R+
Sbjct: 239 KREHRSIL-NSSLTRVAGAKAIVANPTHISVALDYEPGKHDLPYILAMGTDDEALRIREF 297
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A ++ IPI LAR L++ + I + AQ+ +
Sbjct: 298 AKKNGIPIIVNVKLARMLYQDCEEDEYIQREHLELAAQVFRAVMEM 343
>gi|307131233|ref|YP_003883249.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
gi|306528762|gb|ADM98692.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
Length = 359
Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 74/341 (21%), Positives = 158/341 (46%), Gaps = 8/341 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G S++ A L +L G+ + + + + L+
Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
T I + + + + + ++ + IQ P+ + +K F
Sbjct: 63 ITDPFGHAADEI---FSEALSLLTTFCLLTISVALLMRLVGGWIQYGPLFAVEALKIDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ IK+++++ L + + + +K + +G + + + +++ + +
Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELAYGDLTTFWKGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ V L + L VLD G + + + +MS ++I++E K S G+P +K +KS
Sbjct: 180 ENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A+ + ++ A +++ NPTHYA+AL Y + P ++ KG++ AK +
Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDQAKALI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
A++ +P+ LAR+L++ +P IP + VAQ+
Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-IPEGHYIPRDTLQPVAQV 339
>gi|254253714|ref|ZP_04947031.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
gi|124898359|gb|EAY70202.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
Length = 403
Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 83/343 (24%), Positives = 161/343 (46%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK++ EG S + +S+ + ++ L ++ + + +
Sbjct: 53 SDEKTEEPTHKKLDKVREEGQVAKSADVVEVASLGSIVLVLTAGQHYLADTLRAIVKEAV 112
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ + +L H+ + A L+ + ++ I + Q ++L V P
Sbjct: 113 DFTHGAR--ELQDLWTVLVHIGVQALGLLCGIAAVALVAAIVALAPQTGFKISLKAVMPK 170
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
VS G +RI+S+N+ ++ K K ++ ++ ++ + + + ++
Sbjct: 171 LASVSPGSGFQRIFSMNSAIDLAKMVGKAAILVAVMWQTIKSAMPVVASALDQSVPQLIG 230
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + V+ + L + D + K +MSK E+K E K+S GNP +K +
Sbjct: 231 VLWSVLMHVVAVALGVFVVIGAFDYKLQKWLFIRKNRMSKDEVKREHKESEGNPELKGER 290
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + +RA +++ NP HYA+ALRY E PV++AKG + A ++R+
Sbjct: 291 KRMAREMSQEGPKGGVARANVVVVNPVHYAVALRYDPAEFPLPVVLAKGLDEQALRLRQQ 350
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A ++PI P +AR L K VP+N IP ++ VA ++ +
Sbjct: 351 AMHAHVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 392
>gi|308182928|ref|YP_003927055.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
gi|308065113|gb|ADO07005.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
Length = 358
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|76819009|ref|YP_335586.1| type III secretion system protein HrcU [Burkholderia pseudomallei
1710b]
gi|126456589|ref|YP_001075938.1| type III secretion system protein HrcU [Burkholderia pseudomallei
1106a]
gi|167898600|ref|ZP_02486001.1| type III secretion system protein [Burkholderia pseudomallei 7894]
gi|217425368|ref|ZP_03456862.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
gi|226199022|ref|ZP_03794584.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
gi|242312446|ref|ZP_04811463.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
gi|254183801|ref|ZP_04890393.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
gi|254186715|ref|ZP_04893231.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|254264656|ref|ZP_04955521.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
gi|76583482|gb|ABA52956.1| SctU [Burkholderia pseudomallei 1710b]
gi|126230357|gb|ABN93770.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106a]
gi|157934399|gb|EDO90069.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|184214334|gb|EDU11377.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
gi|217391619|gb|EEC31647.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
gi|225928797|gb|EEH24822.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
gi|242135685|gb|EES22088.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
gi|254215658|gb|EET05043.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
Length = 352
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|320015476|gb|ADV99047.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 259
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 131/224 (58%)
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A P + L A
Sbjct: 1 MSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDAL 60
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ ++++L ++ + D+ + KL+M+KQ+I+DE K G+P +K R +
Sbjct: 61 HLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 120
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A ++R++ E
Sbjct: 121 QRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAE 180
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 181 HRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 224
>gi|183221908|ref|YP_001839904.1| flagellar biosynthetic protein FlhB [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|167780330|gb|ABZ98628.1| Flagellar biosynthetic protein FlhB; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 403
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 3/322 (0%)
Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
GN P S E + +L L I + + L + +L+
Sbjct: 71 GNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKYLPMGMHHERFGAEEFRVILS 130
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS-INN 144
+S L+ P L + ++F I ++Q + + + F R+S KR+
Sbjct: 131 GVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSFRFDRISP--NFKRVLPNRQT 188
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L N +KS K++L+G I I ++ ++ +L + + ++ K+++ L +
Sbjct: 189 LFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQAITLVTYSGFKIMMAAGLLLL 248
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
+ V D + ++ LK + E K E+K+ G+P++KNR+ +AR ++ M+ +
Sbjct: 249 GIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKNRRMQLARDMMQGNMLREVPK 308
Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
A ++ITNPTHY++AL Y + AP ++AKG+N +A ++R+IA E+++PI E P AR L
Sbjct: 309 ADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIRRIARENDVPIVESPKQARLL 368
Query: 325 FKQVPINSAIPPVFYKAVAQLI 346
+ QV + IP F++AV Q++
Sbjct: 369 YAQVEVGDEIPQEFFQAVVQIL 390
>gi|146278644|ref|YP_001168803.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
17025]
gi|145556885|gb|ABP71498.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17025]
Length = 359
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 97/348 (27%), Positives = 172/348 (49%), Gaps = 2/348 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE D ++K PS +K+E+A +G P S++ +S L+ L I +
Sbjct: 1 MSEGD--EDKPHEPSQRKLEEARRKGELPKSQDLVTAASYGGLLLAALGLGQGAIQRMGD 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL A + + L +S V+P + + + + + QR V+
Sbjct: 59 MGTSLLGQADRFSTLLSDKAQPQVGGLLVSVLLTVLPFFAIPALAAVAALVAQRALVVAP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P +R+S G + + N L F KS VK++LV + + +T + MLD ++
Sbjct: 119 TKLAPKTERISPVSGFRNRFGRNGLFEFAKSLVKLLLVAVVFALFITFHMAGMLDMLAMA 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + F + + L +++L + ++D W + + +MS++E+ DE K + G+P
Sbjct: 179 PGLAVGRMFMLMLEFLAIVVLLSGGIGLIDYFWQRAEHLRRHRMSRKELTDEAKDAEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K +++ A ++M++ A +++ NPTHYA+ALR+ + + AP+ VAKG + IA
Sbjct: 239 HVKAQRRQKAMEIATNRMLQDVVGADVVVVNPTHYAVALRWKRGDRRAPLCVAKGTDEIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
++R+ A E +PI +P AR+L V + I P YKAVA I
Sbjct: 299 ARIRERAAEAGVPIHRDPPTARALHAAVRVGEEIRPEHYKAVAAAIRF 346
>gi|304321150|ref|YP_003854793.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
HTCC2503]
gi|303300052|gb|ADM09651.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
HTCC2503]
Length = 355
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+EN K+ + ++I+ A +G+ S E +F+ L L+ LL F S ++ +
Sbjct: 1 MAENQDEAEKSHEATPERIKQARQKGDVAQSPEVLVFARYLGILVALLGFVSALAMNMAT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L+V +A + +S L S++ + + I + Q+ V
Sbjct: 61 SLNVFMARPFEASARLMSDADPL--EGFGSSALFFFALMAAPIALVIAGLIAQQALVFAP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
N +KP +++ + K+ + L +F+++ VKI +V + + + + A
Sbjct: 119 NKIKPDLNKLNPVKNAKQKFGKAALTDFVRNTVKITIVMVVGMVIGLAQTGRLTASVGAP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + R ++I ++ A +D+ + Q+ +LKMS+QE+KDE K + G+P
Sbjct: 179 PGLLAEELAGLARIMVITGVILAAIAAGIDLPIKWSQYRERLKMSRQELKDETKSTEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++ ++ AR +++ + A +++ NP HYA+AL++ + + P +AKG + IA
Sbjct: 239 AQRSERQKRAREIAQNRQLLDVPDADVVVVNPEHYAVALQWNRHRGEVPRCIAKGVDAIA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++R IA E +P++ + ARSL+ V + I Y+AVA I +
Sbjct: 299 LRIRNIADEAGVPLYRDVQTARSLYAVVEVGEEIRYEHYEAVAAAIRFADKLR 351
>gi|289678002|ref|ZP_06498892.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
FF5]
Length = 359
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 151/347 (43%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIA---SEGFTVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K I +G + + + T++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|261839413|gb|ACX99178.1| flagellar biosynthetic protein [Helicobacter pylori 52]
Length = 358
Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + I L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESIQKLFNQLAKDTFLLLLPILIILVVMAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|48479060|gb|AAT44853.1| transmembrane protein [Burkholderia pseudomallei]
Length = 352
Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V+P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVRPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGEC 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341
>gi|66044456|ref|YP_234297.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
B728a]
gi|63255163|gb|AAY36259.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
B728a]
gi|330969107|gb|EGH69173.1| type III secretion protein HrcU [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 359
Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K I +G + + + T++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|109947223|ref|YP_664451.1| flagellar biosynthesis protein FlhB [Helicobacter acinonychis str.
Sheeba]
gi|109714444|emb|CAJ99452.1| flagella-associated protein [Helicobacter acinonychis str. Sheeba]
Length = 358
Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ +M S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSRESVQELFNQLAKDTFLLILPILIILVMVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KAIEPKLSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ G+P
Sbjct: 175 LKDQLLWFKNKALLLISSLLFLFFILAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGSP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EVKAKIRQTMMRNAANKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDHLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA E++I I E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 294 IRIKGIAREYDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346
>gi|317407764|gb|EFV87691.1| hypothetical protein HMPREF0005_03212 [Achromobacter xylosoxidans
C54]
Length = 357
Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 171/346 (49%), Gaps = 3/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE PS K++ D+ +G+ S++ + +LA Y L ++ ++L
Sbjct: 6 SGEKTEPPSQKRLRDSRKKGDVAYSKDFTQTVLVLALFGYTLGNAGAIFEALG---RIIL 62
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + I +L L + +P L + + GI + +Q VL + PS
Sbjct: 63 TPANFTSIPFGAAINTVLDILLQELIAISLPYLGIVIGIGIFADAMQVGLVLAFQKLLPS 122
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K++++ +K I+S NLV F+KS KI+ + ++T + + ++ + +
Sbjct: 123 AKKINIMANLKNIFSKKNLVEFLKSTAKIVFLSVLVTQVIKDAMPELMKIPHSGLVGMGA 182
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+R +++ I + ++V D+GW Q+ L MSK+E+K E K+ G+P IK+ +
Sbjct: 183 AMGSMMRTLVVNIAVAYFVISVADLGWQRMQYRKGLMMSKEEVKQEYKEMEGDPHIKHAR 242
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + + ++ T +A++++TNPTH A+AL Y + + PV++AKG+ +A M K
Sbjct: 243 KHLHQEMAMNDTVQNTRKASVVVTNPTHLAIALFYEEDKVPLPVVLAKGEGALAAAMVKA 302
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A E IP+ + LAR+L ++ IP A+L+ +
Sbjct: 303 AREEGIPVMQNIPLARALMVHGSVDQYIPAELVVPTAELLRLLRQL 348
>gi|85059286|ref|YP_454988.1| secretion system apparatus protein SsaU [Sodalis glossinidius str.
'morsitans']
gi|84779806|dbj|BAE74583.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 354
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 83/342 (24%), Positives = 150/342 (43%), Gaps = 3/342 (0%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE P+ K+ D EG S E + + A L++ F I ++ + + ++
Sbjct: 2 GEKTEKPTEKRRRDRRKEGQVIKSNEITSGVQLAAILLFWHLFAEAVIERTSTLIVLSIS 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ L + ++ ++ SA L + + +GS L+Q VL V
Sbjct: 62 LINRPFLFAFNQLLHVVLS---SAGLLFALFGGMLALATVGSVLLQIGFVLASKAVGIKG 118
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+R++ +K+I+S+++LV KS K++++ I T N L
Sbjct: 119 RRINPVSNLKQIFSLHSLVELCKSTGKVVVLTLIFAGLFYYYATTFQALPFCNSRCALPL 178
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
R + ++ F L VLD + H + +MSK+E+K E K + G+P +K R+
Sbjct: 179 FTTFTRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQEYKDAEGDPYMKQRRH 238
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ + R+ ++I NPTH A+ L Y + P ++ KG A ++ +A
Sbjct: 239 EMQHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRVLDKGTAERAGQIVDLA 298
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+P+ E LAR+LF+ V IP ++ VA L+ +
Sbjct: 299 QRAAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLLRMV 340
>gi|330809227|ref|YP_004353689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377335|gb|AEA68685.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 357
Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats.
Identities = 85/346 (24%), Positives = 169/346 (48%), Gaps = 2/346 (0%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+K+E + K+E+A +G P S + F +L L+ P + + H
Sbjct: 2 SDQQDKSEEATPYKLEEARKKGQVPRSPDLLSFIMLLTFLMVFSAIAYPLASVIAAHTHW 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L +A Q + ++ + ++P + ++ I + L+ PV ++ +K
Sbjct: 62 WLGNAGQLG-QGFGYLGEQGGYSLRQVVYGLLPLIGALVLMAILTNLLFSGPVFSMTALK 120
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P FKR+ +G+K+++S V +K VK L ++ +L + +P +
Sbjct: 121 PDFKRLHPIQGLKKLFSRRMFVELIKVLVKGALFSLVLYYLFQSVLPQLLGMATISPLEL 180
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ ++ +L +A + DI +S ++ +++MS++E KDE ++ G+P ++
Sbjct: 181 PQAGKQLLMQLGFTVLAVMAAAALFDIWYSRREFGRQMRMSRRETKDEHRRREGDPEVRA 240
Query: 245 RQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++K I ++ ++ + A +IITNPTHYA+AL+Y + AP ++A G+ L A+++
Sbjct: 241 KRKGIQQALLKKAAALGQVKDADVIITNPTHYAVALQYRPSSMLAPKVLAMGRGLHARRI 300
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+A +H +PI P LAR+L ++SAIP VA++ +
Sbjct: 301 CHVARKHQVPILRRPPLARALHALARVDSAIPDSTQADVARIYRWV 346
>gi|117928068|ref|YP_872619.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
gi|117648531|gb|ABK52633.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
Length = 391
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 79/354 (22%), Positives = 159/354 (44%), Gaps = 9/354 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ +K+++A EG S E + +L + + + T+
Sbjct: 1 MADRSQ---KTEKPTQRKLKEARREGRVARSPEVGAWLGLLVGIFLVHLTMT----RTTA 53
Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ TQ + D + V +L S + P ++ +G+ + Q L+
Sbjct: 54 AFRQAIDGLTQVIRTPDPNLAVHVLGTSLASGAVAAAPLAGAILLTALGASVAQGGLRLS 113
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P ++ ++ G KR++ K+ K L+ I+ ++
Sbjct: 114 AKALAPKWQSLNPLNGWKRMFGPRGGWEAAKALAKTGLLALILYDTMRGLVPLTTTGTVT 173
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+++ A V + + L LD + + + L+M+K E+K+E++ + G+
Sbjct: 174 PLQGVVHTAGSAVLRFARDAAVAGLLLAFLDYAYQLRRHRASLRMTKHEVKEELRTTEGD 233
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P I++ + + R +M+ + A +++ NPTH A+ALRY AP +VAKG +
Sbjct: 234 PRIRSAIRVRQMALRRRRMIRDVATADVVVVNPTHIAVALRYTPGS-GAPTIVAKGAGAV 292
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R A H +P+ E+ LAR+L++ + IP + AVA+++ ++ K
Sbjct: 293 AARIRDEAIRHRVPLVEDIPLARALYRICDVGQEIPRELFVAVARVLAFVFSLK 346
>gi|203287732|ref|YP_002222747.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
gi|201084952|gb|ACH94526.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
Length = 373
Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 160/351 (45%), Gaps = 6/351 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ ++ + A EG S E + S+ F S +
Sbjct: 21 SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSYFAQELMDIFKW 80
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
A++ I L R V ++ + G ++Q V+ L +
Sbjct: 81 ---QASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIM 137
Query: 125 PSFKRVSLR--EGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P + R++ + +K + S++ N KS +KI ++ I I L N + +
Sbjct: 138 PKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYSL 197
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+ ++ ++ + L+VLD + ++ LKM+K+EIK E K+ G+P+
Sbjct: 198 EGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDPL 257
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++R + R + A +A ++ITNP H+A+A+++ AP ++AKGQ+ I
Sbjct: 258 LRSRMRERMREISNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIVF 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y
Sbjct: 318 VIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVYSI 368
>gi|167770199|ref|ZP_02442252.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
17241]
gi|167667521|gb|EDS11651.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
17241]
Length = 291
Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats.
Identities = 83/284 (29%), Positives = 151/284 (53%)
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + I + +P LL+ + + + Q + + P F R
Sbjct: 3 SSIDRIGMQEIRIYFMQGCIFFVLSALPLLLICGLVVVICTVAQTRGLFTMKAAAPKFGR 62
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ +GIK+++S+ +V +KS VKII++G II SL E +F M + + L
Sbjct: 63 MNPLQGIKKMFSLRGVVELLKSIVKIIILGYIIYNSLGEQFFFMPRLMDMSLEQALAFTG 122
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ + + + + D + + + L+MSKQE+K+E KQ+ G+P +K + K
Sbjct: 123 NIILDIAKTAAIVMVFVAGFDYLYQWWDFEKNLRMSKQELKEEFKQTEGDPQVKGKIKER 182
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + R +MM+ A ++I NPTHYA+A++Y +N+APV++AKG + +A ++ K+A E
Sbjct: 183 QQQQARQRMMQNVPNADVVIRNPTHYAVAIQYNPHQNNAPVVIAKGMDSLALRIVKVAQE 242
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
H+I E LAR L++ V ++ IP FY+ VA+++ +Y+ K
Sbjct: 243 HDIITMENKPLARGLYETVDLDREIPEQFYQPVAEVLAFVYNLK 286
>gi|330950827|gb|EGH51087.1| type III secretion protein HrcU [Pseudomonas syringae Cit 7]
Length = 359
Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSMSFQG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIA---SEGFSVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K I +G + + + T+ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400025|emb|CAF23474.1| putative type III secretion pathway protein sctU [Candidatus
Protochlamydia amoebophila UWE25]
Length = 357
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 81/356 (22%), Positives = 159/356 (44%), Gaps = 21/356 (5%)
Query: 8 DNKTEAPSSKKIEDALNE---------GNAPISREASLFSSILACLIYLLFFFSPGIYSV 58
+KTE + G S++ + +A + +L S + +
Sbjct: 2 GDKTEKATP---------KKLKDAKKKGQIAKSQDLPTAFTFIASVAIILALASSLYHQL 52
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+ L S +L + IV L + IP + L + G+ + PV
Sbjct: 53 ANFLVGTFRSVNTPELSGV--IVNLFYKANEVIFLASIPTMALVALVGVTITFLTVGPVF 110
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
K K+ + + +K + + LV +KS +KI + +I + + ++ +S
Sbjct: 111 APEVFKFDIKKFNPVDNLKAKFKLKTLVELLKSVIKISIASYLIYKVMYNSIPVLIQTVS 170
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
L + +V++ + LF + V D + + ++ M K E+K E K S G
Sbjct: 171 MPISGALIVFHAFLVEVVLKVGLFFIVVAVADFIYQKKTFAKEMMMEKFEVKQEYKNSEG 230
Query: 239 NPIIKNRQKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
+P IK +++ IA+ + RA ++TNPTH A+A+ Y + + AP ++A G++
Sbjct: 231 DPHIKGKRRQIAQEIAYQEGPTGGVKRAQAVVTNPTHLAIAIGYERHMDAAPYILAMGKD 290
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
++A+++ KIA +++IP+ +LA L++Q I +P Y+A+A+++ I K
Sbjct: 291 VLAERIVKIAEKNDIPVLRNITLAHILWEQGEIYEYVPEDTYEALAEIMRWIASLK 346
>gi|119385353|ref|YP_916409.1| flagellar biosynthesis protein FlhB [Paracoccus denitrificans
PD1222]
gi|119375120|gb|ABL70713.1| type III secretion exporter [Paracoccus denitrificans PD1222]
Length = 368
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 88/355 (24%), Positives = 157/355 (44%), Gaps = 4/355 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + D+K + K+ A EG+ P S E L LF + +
Sbjct: 1 MS-RENNDDKQFDATESKLRKARQEGDVPRSAELQSALMYLGFWFAALFATIWAVPAWLG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L E + L L+ A + + G+ + + + + QR VL
Sbjct: 60 MAARVLGGEPWPDAEG-RAVADLARALAGQAGLVTVAGVAIMALPILLGMVAQRSVVLTP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P FKRV+ + + + + LV F S K +LVG ++ +
Sbjct: 119 KKLLPDFKRVNPVKNAAQKFGKSGLVTFAISLGKALLVGVGGWFLYASLLAWLMTSGAMR 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ +R+ +++ L A ++D+ W ++ + +MS+QE++DE K++ G+P
Sbjct: 179 DLQWVEGLGLILRRAVLLALGIGAIFAIIDLIWKRLEYLKRHRMSRQEMQDEHKENEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K ++ + M+ +A +II NPTHYA+AL + + APV +AKG + +A
Sbjct: 239 HLKAARRQKGVDIVLSAMLADVQKADVIIVNPTHYAVALEWKRGSGRAPVCLAKGVDDVA 298
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK--IYHKK 353
+++R+ A +H +PI+ +P AR+L V I I + VA I KK
Sbjct: 299 RRIRERAQDHRVPIWSDPPCARALHATVEIGQEIKAEHFAPVAAAIRFAEAMRKK 353
>gi|330812427|ref|YP_004356889.1| type III secretion protein, membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|312597804|gb|ADQ89919.1| RscU [Pseudomonas fluorescens]
gi|327380535|gb|AEA71885.1| putative type III secretion protein, putative membrane protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 366
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 77/348 (22%), Positives = 162/348 (46%), Gaps = 9/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE KT+ + KKI DA N+G S++ S + A L + ++
Sbjct: 1 MSE--DSGEKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGD 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L + ++ + L H + + L ++ + + IQ +
Sbjct: 59 MVTFPL---HRLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFLFAP 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P R++ K+++S L+N VK + +GT+I + ++++ ++ +
Sbjct: 116 EALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLINLVNGD 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+S R ++ + L + L +LD G + + +L+MS++E++ E K+ G+P
Sbjct: 176 LNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFKEMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
+K ++S+AR + + + A +++ NPTH+A+AL Y E P L+ KG +
Sbjct: 236 HVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVKGVD 295
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
A+ + + A +P+ + LAR+++++ + + IP +AVA +
Sbjct: 296 AEARALIERAKVARVPVIQCIWLARTIYRE-DVGAYIPRETLQAVAHI 342
>gi|82795281|gb|ABB91650.1| type III secretion protein HrcU [Pseudomonas syringae pv. tagetis]
Length = 359
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 73/347 (21%), Positives = 149/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ +LA L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLADESVNRLQALLGLSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + I + + L M+ + S +Q + +K
Sbjct: 63 IDRPFMASVELIAN---EGFSVLLSFTLCSVGLAMLMRLISSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N++N + S +K + +G + + T++ ++ + +
Sbjct: 120 KINPFSHAKQMFSGQNILNLVLSVLKALAIGATLYSQVKPALGTLILLANSELTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ L +IL + + ++D + KL+MS ++IK E KQS G+P +K+ ++
Sbjct: 180 VELFQHTLRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKDHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + +
Sbjct: 240 LSHEILNQEPSAAPKPVEEADMLLINPTHYAVALYYRSGETPLPMIHCKGEDADALALIE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + LAR+L+K V IP VA + +
Sbjct: 300 RAKKAGIPVVQSIWLARTLYK-VKAGKYIPRTTLLTVAHIYKVVRQL 345
>gi|253688600|ref|YP_003017790.1| type III secretion protein, YscU/HrpY family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755178|gb|ACT13254.1| type III secretion protein, YscU/HrpY family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 359
Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 72/349 (20%), Positives = 154/349 (44%), Gaps = 7/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G S++ + L +L + + + + + L
Sbjct: 3 EKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQ- 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ A L + + ++ I IQ P+ +K
Sbjct: 62 --RLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRIVGGWIQYGPLFAPEALKLDLN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ LV + + +K +++GT+ + +++ + H
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + + A +++ NPTHYA+ L Y + P ++ KG++ A+++
Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAAQELI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IP+ L R+L++ P IP +AVAQ+ + +
Sbjct: 300 AQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQVYRVLRQLE 348
>gi|206896079|ref|YP_002246703.1| flagellar biosynthetic protein FlhB [Coprothermobacter
proteolyticus DSM 5265]
gi|206738696|gb|ACI17774.1| flagellar biosynthetic protein FlhB [Coprothermobacter
proteolyticus DSM 5265]
Length = 343
Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 88/346 (25%), Positives = 171/346 (49%), Gaps = 12/346 (3%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
+TE PS +++E A+ EGN P S E + + ++ L ++ + S +
Sbjct: 4 GERTEPPSPRRLERAIQEGNVPQSPELTGAIGLFVFVLILRVYYPRFVSSWQRMWFGVFY 63
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
S + +V L T L + ++ + + L+ L + P
Sbjct: 64 SVSPETAAHDLAVVLLSTLPVLL----------VPLLAVVLATLVLSGVRLYPKKMVPKL 113
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
++ + IKRI+S+ +L +K+IL+ + L ++ + + +P +
Sbjct: 114 DGLNPAQNIKRIFSLQSLEQMGIGLLKVILLSVVAY-FLAKDRLVGIMSGTQDPIQFMSL 172
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + +L+ ++ + + D + +W++ LKM+K+E+K+E+K G+P +K R +
Sbjct: 173 SASILTDILLYLVAVYLLIGLADYAFQRRRWWNSLKMTKEEVKEEMKSIEGDPTVKARLR 232
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
S R + + +AT++ITNPT YA+ALRY + AP LVAKG +A++++ A
Sbjct: 233 SRMRQYAMRRSLADVKKATVVITNPTEYAVALRYEKG-MVAPELVAKGAGWLAQRIKDEA 291
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+N+P+ P LAR++F++V + I P Y+AVA ++ ++ KK
Sbjct: 292 RRYNVPVVVRPELARTIFRKVEVGDYITPDLYQAVAAVLVEVMKKK 337
>gi|308063444|gb|ADO05331.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Sat464]
Length = 358
Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGTKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMIKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|224531929|ref|ZP_03672561.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
gi|224511394|gb|EEF81800.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
Length = 372
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + +L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSAEINTAVGLLLLSALFFFMLSYFALDLVAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + I + F S V+ + ++Q + ++P
Sbjct: 81 ASKLPEVMKMSIYAMGFAYIR---SIMGYVVLFFFASLAVNFFVNIVQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 KWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIFYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+ + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 TGISIVLVLAYKICFFSVIFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEMALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|331664423|ref|ZP_08365329.1| surface presentation of antigens protein SpaS [Escherichia coli
TA143]
gi|331058354|gb|EGI30335.1| surface presentation of antigens protein SpaS [Escherichia coli
TA143]
Length = 370
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L +K F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|323956511|gb|EGB52253.1| flagellar biosynthetic protein FlhB [Escherichia coli H263]
Length = 263
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 138/231 (59%)
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P
Sbjct: 1 MQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPI 60
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+ + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +
Sbjct: 61 TAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 120
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A +
Sbjct: 121 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 180
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 181 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 231
>gi|320538195|ref|ZP_08038090.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
gi|320145012|gb|EFW36733.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
Length = 379
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 9/353 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ K+ A EG P S++ + + + L+ + S L
Sbjct: 22 EDEGRTEDPTETKLRKAREEGRVPKSQDMNSALVVFFPALALILLAPHILNSCMEILKFF 81
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
Q + + + +++V P + + G+ S LIQ + + ++
Sbjct: 82 FLRCIQADIRSGEWFFVFIKY----FAQIVFPITFIALTAGVLSNLIQNRGFLFSTKPIQ 137
Query: 125 PSFKRVSLR---EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P F ++S + ++SI L N KS +K+ + + + + N + + +
Sbjct: 138 PKFDKISPNIVRFFTRALFSIEGLFNLAKSLMKVAAIVFVSYLIIKSNITVFISMLQVSF 197
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+++ K+L + L + + D + Q+ LKMSK EIK+EIK+ G+P+
Sbjct: 198 VQAVFYIAGLAAKILAAVSLLLLLFAIPDYFFQRKQFIDSLKMSKSEIKEEIKEQEGDPL 257
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
IK++ + ++ +R A + A ++ITNPTHYA+A++Y E AP+++AKG + +A+
Sbjct: 258 IKSQLRRQMQAIVRESARGA-ATADVVITNPTHYAVAVKYDLGEMPAPIVIAKGSDQLAQ 316
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
++++IA E+NIPI E LARSL+ QV I +P ++ A+ + K+ K+
Sbjct: 317 RIKEIARENNIPIEENKPLARSLYAQVAIGKEVPYEYFNALVLIFTKLDKFKM 369
>gi|330957485|gb|EGH57745.1| type III secretion protein HrcU [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 359
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLSLADDSVNRLEALLTLSFQG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + + LS + + + M+ + +Q + +K
Sbjct: 63 IDRTFAASVELVASEGLSVLLSFTLCSV---GIAMLMRLIGSWVQIGFLFAPKALKVDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K + +G + + ++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSILKAVAIGATLYTQVKPALGALILLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VDLFRHILRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRAGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|320107036|ref|YP_004182626.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
gi|319925557|gb|ADV82632.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
Length = 373
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 4/348 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
++++E S ++ + + ++G SRE + +++A ++ L + + +L
Sbjct: 2 SEDRSEKASEQRKKKSRDKGEGVRSRELNAAFAMMAGILVLGGSARRFVPLWATAYREML 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
++ + S + + + + + F + + + +
Sbjct: 62 SALGHTEWTPESLLDAARILILPTLGPVALVMGAAFCGALLSGMVQSGGLQFHAEALAIK 121
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
R++ +K+I S LV KS V +V + L M + +
Sbjct: 122 TTRLNPWSNLKQIASARALVRVSKSLVPAGIVLALGISCLHGVMDPMAVLSNFRLMTA-- 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
F +L+ + D + W +LKMSKQE++ E K++ G+P +K R
Sbjct: 180 --FSASYALLLNAAWLMVAWAGFDYVMEWRSWNQRLKMSKQELRQEHKEAAGDPQVKGRI 237
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ I R+ + + SRAT++I NPTH+A+AL + P ++AKG++L A ++R+
Sbjct: 238 RQIQRAMRKRRAKVDVSRATVVIVNPTHFAVALEFSFETMQPPRVLAKGRDLHAHEIREE 297
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
A +PI E P LARSL++ V + + IP Y AVA ++ +Y +++
Sbjct: 298 AMWAGVPIVENPLLARSLYRSVKVGNTIPFELYAAVAGILAFLYRQEV 345
>gi|301027459|ref|ZP_07190796.1| surface presentation of antigens protein SpaS [Escherichia coli MS
69-1]
gi|300394967|gb|EFJ78505.1| surface presentation of antigens protein SpaS [Escherichia coli MS
69-1]
Length = 370
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 77/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L +K F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + T + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWTNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|323966652|gb|EGB62084.1| YscU/HrpY family protein type III secretion protein [Escherichia
coli M863]
gi|323978521|gb|EGB73603.1| YscU/HrpY family protein type III secretion protein [Escherichia
coli TW10509]
gi|327251613|gb|EGE63299.1| surface presentation of antigens protein spaS [Escherichia coli
STEC_7v]
Length = 370
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L +K F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|296125237|ref|YP_003632489.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
12563]
gi|296017053|gb|ADG70290.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
12563]
Length = 399
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 83/355 (23%), Positives = 177/355 (49%), Gaps = 6/355 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
+ + +TE P+ +K A E G S E + + + + + +V+
Sbjct: 38 SPEDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVTIAVIALLTTYLTDTVSKFF 97
Query: 63 HVLLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
+L + ++ + + + + ++ L + ++ G+G L Q +
Sbjct: 98 MTILNKISTADATMNVLSLPDMFLEIVVLIAKTAGIVLAVALVVGVGINLAQTKFLFTTK 157
Query: 122 HVKPSFKRVSL-REGIKRIYSI--NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+KP+FKR++ K + NL+N K K++++ + ++ + + +
Sbjct: 158 KLKPNFKRIAPTWSNFKERVFVSSQNLMNLAKILFKMVVISFLTFTTIYGKSTELFNMTN 217
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
++ FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G
Sbjct: 218 MELPQAMHLFFFIVLEMLAKVIVFMIIVSAFDYFFQRRQYINSLKMTKHEMKEEFKEMEG 277
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P++K++ + +AR + M++A A ++ITNPTH+A+AL+Y + APV+ AKG +
Sbjct: 278 DPLVKSQLQDMARKIVSRTMLKAVPEADVVITNPTHFAVALKYENG-DYAPVVTAKGADH 336
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA ++++IA E+++ I E LAR L+ V I IP + V++++ ++Y +
Sbjct: 337 IALRIKEIAKENDVQIVENKPLARELYFNVEIGQYIPEKLFHVVSRILGEVYRIR 391
>gi|292487013|ref|YP_003529883.1| type III secretion protein HrcU [Erwinia amylovora CFBP1430]
gi|292900602|ref|YP_003539971.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|1181176|gb|AAB06008.1| HrcU [Erwinia amylovora]
gi|291200450|emb|CBJ47579.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552430|emb|CBA19475.1| Type III secretion protein HrcU [Erwinia amylovora CFBP1430]
Length = 360
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 162/357 (45%), Gaps = 14/357 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK++DA +G P S++ + +L G+ + +
Sbjct: 1 MAE------KTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + LA Q +S +V + + + + + + I IQ P+
Sbjct: 55 LMMLPLARIGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAP 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F R++ K+++S+ L + S VK + + TI + LT + ++ +
Sbjct: 112 EALQPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGD 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + V LL + LT+LD G + + + +MS Q+I+DE KQS G+P
Sbjct: 172 LDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
+K + ++A + A +++ NPTHYA+AL Y P ++ KG+
Sbjct: 232 HMKGHRHALAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGE 291
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ AK++ A + NIP+ LAR+L++ IP +AVAQ+ + +
Sbjct: 292 DQQAKELIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQVYRVLRQLE 347
>gi|300871796|ref|YP_003786669.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
95/1000]
gi|300689497|gb|ADK32168.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
95/1000]
Length = 404
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 174/353 (49%), Gaps = 6/353 (1%)
Query: 6 APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ +K A E G S E + + + + +++
Sbjct: 45 EDEGRTELPTERKKRRAREEEGRVVNSVEINQTLVLGVTTVLIALLIGYLTNTLSQFFVD 104
Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+L + + + + + L ++ LL ++ G+G L Q + +
Sbjct: 105 ILNRISNADATMTMDGLPDIFIEIVLLIAKTAGIVLLTALIIGVGVNLAQTQFLFTTKKL 164
Query: 124 KPSFKRVSL-REGIKRIYSI--NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
KP+FKR++ K I NL+N K K+I++G + ++ + + +
Sbjct: 165 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVIGILTFTTINGRRNDLFNMVHME 224
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ FF V +++ +++F+ + V+D + Q+ + LKM+K E+K+E K+ G+P
Sbjct: 225 LAQAMNVFFFIVLEMIGKVMIFMIIVAVVDYYFQRKQYINSLKMTKHEMKEEFKEMEGDP 284
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++KN+ + +AR + M+++ A +IITNPTH+A+AL+Y + AP++ AKG + IA
Sbjct: 285 LVKNQLQEMARKIVSRTMLKSVPEADVIITNPTHFAVALKYQSG-DYAPIVTAKGVDNIA 343
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA EH + I E LAR L+ V I IP + V++++ ++Y +
Sbjct: 344 LKIKEIAKEHEVEIVENKPLARELYYNVDIGQYIPEKLFHVVSRILGEVYRIR 396
>gi|818894|gb|AAB05078.1| HrpY [Pseudomonas syringae pv. syringae]
gi|148562543|gb|ABQ88362.1| HrcU [Pseudomonas syringae pv. syringae]
Length = 359
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIA---SEGFSVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K I +G + + + T+ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAQEILNQEPSAAPKPLEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|312171082|emb|CBX79341.1| Type III secretion protein HrcU [Erwinia amylovora ATCC BAA-2158]
Length = 360
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 8/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G P S++ + +L G+ + + + + LA
Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q +S +V + + + + + + I IQ P+ ++P F
Sbjct: 63 IGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALQPDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ L + S VK + + TI + LT + ++ + S
Sbjct: 120 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGDLDSFWPAV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + +
Sbjct: 180 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239
Query: 249 IARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + A +++ NPTHYA+AL Y P ++ KG++ AK++
Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDQQAKELI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIP+ LAR+L++ IP +AVAQ+ + +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQVYRVLRQLE 347
>gi|317180535|dbj|BAJ58321.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F32]
Length = 358
Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|317177398|dbj|BAJ55187.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F16]
Length = 358
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLTIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|284922800|emb|CBG35888.1| type III secretion system protein [Escherichia coli 042]
Length = 370
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L +K F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPMPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYTTHRRYDYVS---FENIDEILRLLLWLE 336
>gi|227114165|ref|ZP_03827821.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 359
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 153/349 (43%), Gaps = 7/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G S++ + L +L + + + + + L
Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICIGLLECVLTLADSTMGKLQTLVQLPLQ- 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ A L + + ++ + +Q P+ +
Sbjct: 62 --RLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALNLDLN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ LV + + +K +++GT+ + +++ + H
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + + A +++ NPTHYA+ L Y + P ++ KG++ A+++
Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAARELI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IP+ L R+L++ P IP +AVAQ+ + +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQLE 348
>gi|239815246|ref|YP_002944156.1| type III secretion exporter [Variovorax paradoxus S110]
gi|239801823|gb|ACS18890.1| type III secretion exporter [Variovorax paradoxus S110]
Length = 365
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 97/354 (27%), Positives = 178/354 (50%), Gaps = 4/354 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D ++ EA + K++ A G A S + ++YL + + S
Sbjct: 1 MAEQD--LDRNEAATPYKLQRARERGQAAKSTDVVAALVFGVAVVYLTWRGFGAVASQFR 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL A + + + L+ SA L P M+ I ++Q P+L+
Sbjct: 59 FDQALLIHAGRMDPSGVG-LWPLIERALRSALTLAAPFFAAIMLAAIVGNMMQTGPILSF 117
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VK F R++ G+K+++S+ L + ++ VK+ L+G + ++L S +
Sbjct: 118 EPVKMDFTRINPVNGLKKLFSMRVLFDTARAIVKLALLGLVAFLALEALASQFYALASLS 177
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L + V + + L + + +LD+ ++ ++ K++MS++E+KDE K G+P
Sbjct: 178 PVGYLRTLLDDLASVGLKMALVLTLIALLDLMYTRREFAKKMRMSQRELKDEAKHREGDP 237
Query: 241 IIKNRQKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
I+ R + + R ++ + T A ++ITNPTH A+AL+Y +P L+AKG +
Sbjct: 238 RIRARLRELRRETLKRSLALRQTRNADMLITNPTHLAVALKYEHGRMASPQLLAKGAGHM 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A MR+IA H IP+ + P LAR L+K++P++ ++PP Y VA++I ++ +
Sbjct: 298 AAAMREIAARHRIPVVQNPPLARRLYKELPVDHSVPPELYAQVARIIVWVFAMR 351
>gi|227328488|ref|ZP_03832512.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 359
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 72/349 (20%), Positives = 154/349 (44%), Gaps = 7/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G S++ + L +L + + + + + L
Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQ- 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ A L + + ++ + +Q P+ +K
Sbjct: 62 --RLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ LV + + +K +++GT+ + +++ + H
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ L + L+VLD G + + + +MS +++++E K S G+P +K +KS
Sbjct: 180 KALLTRIARTTLTALLVLSVLDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + + A +++ NPTHYA+ L Y + P ++ KG+N A+ +
Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IP+ L R+L++ P IP +AVAQ+ + +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQLE 348
>gi|332673425|gb|AEE70242.1| flagellar biosynthetic protein FlhB [Helicobacter pylori 83]
Length = 358
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|217033738|ref|ZP_03439164.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
gi|216943787|gb|EEC23227.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
gi|317178869|dbj|BAJ56657.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F30]
Length = 358
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ G+K ++S+ L++ +K+ L + + + N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346
>gi|300936205|ref|ZP_07151141.1| surface presentation of antigens protein SpaS [Escherichia coli MS
21-1]
gi|300458662|gb|EFK22155.1| surface presentation of antigens protein SpaS [Escherichia coli MS
21-1]
Length = 370
Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|331654348|ref|ZP_08355348.1| surface presentation of antigens protein SpaS [Escherichia coli
M718]
gi|331047730|gb|EGI19807.1| surface presentation of antigens protein SpaS [Escherichia coli
M718]
Length = 370
Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats.
Identities = 77/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|110677564|ref|YP_680571.1| flagellar biosynthesis protein FlhB [Roseobacter denitrificans OCh
114]
gi|109453680|gb|ABG29885.1| flagellar biosynthetic protein FlhB [Roseobacter denitrificans OCh
114]
Length = 362
Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats.
Identities = 93/354 (26%), Positives = 163/354 (46%), Gaps = 1/354 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D +K+ + +K+ +A +G S E +S L+ LL F G+ + S
Sbjct: 1 MSAPDEEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLLALLLFGESGLLELGS 60
Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
+ V++ + Q L + S ++P + + + R V
Sbjct: 61 TMAVIIGQSAQIAPLFFEGAGTVPARGIIQSTGSALLPIFVYPALAVMLVLFATRGIVFA 120
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
V+P ++S+ K + L F+ SF K+I+ I+ + L M+ +
Sbjct: 121 PTKVQPKLSKISVISNAKNKFGRTGLFQFVLSFSKLIIYSAILAVFLYHRTNEMVAALQT 180
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
P + + LI +++ A + +D W + + K KMS++E+ DE K S G+
Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P +K ++ A+S ++ + A ++I NPTH+A+AL++ +T APV VAKG +
Sbjct: 241 PYMKQERRQRAQSLAGTQVAVEVAAADVVIVNPTHFAVALKWDRTPGQAPVCVAKGVDET 300
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A ++R+IA E+ +PI +P AR+L I I P YKAVA I + +
Sbjct: 301 ALRIREIATENAVPIHSDPPAARALHATTNIGDQIAPEHYKAVAAAIRFAENMR 354
>gi|34500880|gb|AAQ73908.1| HrcU [Pectobacterium carotovorum subsp. carotovorum]
Length = 359
Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats.
Identities = 71/349 (20%), Positives = 153/349 (43%), Gaps = 7/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G S++ + L +L + + + + + L
Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQ- 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ A L + + ++ + +Q P+ +K
Sbjct: 62 --RLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ LV + + +K +++GT+ + +++ + H
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + + A +++ NPTHYA+ L Y + P ++ KG+N A+ +
Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +IP+ L R+L++ P IP +AVAQ+ + +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQLE 348
>gi|14719875|gb|AAK73239.1| SctU [Burkholderia pseudomallei]
Length = 351
Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 165/343 (48%), Gaps = 4/343 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L
Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + + L A V+P L + + GIG ++Q ++L V P+
Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K ++S + + +K VK ++V + ++ + + + +P +
Sbjct: 120 LGALNPAEGLK-LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K L+++ + D+ + K+KM+K E+K E K G+P++K +
Sbjct: 179 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+
Sbjct: 239 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 299 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 340
>gi|225619293|ref|YP_002720519.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
WA1]
gi|225214112|gb|ACN82846.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
WA1]
Length = 400
Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats.
Identities = 83/353 (23%), Positives = 176/353 (49%), Gaps = 6/353 (1%)
Query: 6 APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+ +TE P+ +K A E G S E + + + + + ++V
Sbjct: 41 EDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVSIAVIALLTTYFTHTVAQFFIT 100
Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+L + + + +L + + ++ + + ++ G+G L Q + +
Sbjct: 101 VLNKISNADASINNTAYTDMLLEIFVLLAKTAGIIMAVALVVGVGVNLAQTQFLFTTKKL 160
Query: 124 KPSFKRVSL-REGIKRIYSI--NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
KP+FKR++ K I NL+N K K+I++ + ++ + + I+
Sbjct: 161 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVISLLTFTTIYGKRTELFNMINMG 220
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G+P
Sbjct: 221 LSQAMNLFFFIVLEMLAKVIIFMIIVSAFDYFFQKRQYINSLKMTKHEMKEEFKEMEGDP 280
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K++ + +AR + M+++ A ++ITNPTH+A+AL+Y + AP++ AKG + IA
Sbjct: 281 LVKSQLQEMARKIVSRTMLKSVPEADVVITNPTHFAVALKYENG-DYAPIVTAKGADHIA 339
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+++IA ++++ I E LAR L+ V + IP + V++++ ++Y +
Sbjct: 340 LKIKEIARQNDVQIVENKPLARELYYNVELGQYIPEKLFHVVSRILGEVYRIR 392
>gi|218706359|ref|YP_002413878.1| surface presentation of antigens protein SpaS [Escherichia coli
UMN026]
gi|300898070|ref|ZP_07116438.1| surface presentation of antigens protein SpaS [Escherichia coli MS
198-1]
gi|218433456|emb|CAR14358.1| Surface presentation of antigens protein [Escherichia coli UMN026]
gi|300358208|gb|EFJ74078.1| surface presentation of antigens protein SpaS [Escherichia coli MS
198-1]
Length = 370
Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L +K F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ G+P IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|15639702|ref|NP_219152.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025940|ref|YP_001933712.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
pallidum SS14]
gi|6225351|sp|O83710|FLHB_TREPA RecName: Full=Flagellar biosynthetic protein flhB
gi|3323017|gb|AAC65681.1| flagellar biosynthetic protein (flhB) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018515|gb|ACD71133.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
SS14]
Length = 376
Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats.
Identities = 84/352 (23%), Positives = 171/352 (48%), Gaps = 9/352 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ ++E P+ K+ A EG P S++ + +L L + L
Sbjct: 23 EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
AT +++ + + +L +P + ++ G+ + ++Q + ++ ++
Sbjct: 83 FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138
Query: 125 PSFKRVSLR--EGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P FK++S KR +S L N +KS +KI + + ++ + F + + +
Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ G+P+
Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++ + +S +R T+ A ++ITNPTH+A+A++Y AP +VAKG + A
Sbjct: 259 VRSYVRKQMQSLVRESAR-NTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+++++A E I I E LAR+L+ QV I +P ++ A+ + K+ K
Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNALVLIFTKLDKFK 369
>gi|310766415|gb|ADP11365.1| HrcU [Erwinia sp. Ejp617]
Length = 365
Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 8/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G P S++ + +L G+ + + + + LA
Sbjct: 8 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 67
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q +S +V + + + + + + I IQ P+ +KP F
Sbjct: 68 IGQPFELALSEVV---SSALVLVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALKPDFN 124
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ L + S VK + + TI + LT + ++ + S
Sbjct: 125 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLARLAYGDLDSFWPAV 184
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + +
Sbjct: 185 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 244
Query: 249 IARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + + A +++ NPTHYA+AL Y P ++ KG++ AK +
Sbjct: 245 LAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 304
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIP+ LAR+L++ IP +AVAQ+ + +
Sbjct: 305 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQVYRVLRQLE 352
>gi|108764098|ref|YP_633783.1| FlhB/HrpN/YscU/SpaS family type III secretion protein [Myxococcus
xanthus DK 1622]
gi|108467978|gb|ABF93163.1| type III secretion protein, FlhB/HrpN/YscU/SpaS family [Myxococcus
xanthus DK 1622]
Length = 349
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 87/341 (25%), Positives = 145/341 (42%), Gaps = 10/341 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE PS+K++ +A +G P SR + + L L G+ +
Sbjct: 2 SGEKTEKPSAKRLREARRKGQIPRSRLLNASAVTAGGLFGLTAAAPVGMARL-------- 53
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A L + A+R P L + + +L HV+P
Sbjct: 54 -QAWTEHLFLGQQDLGAWQEGLWIAARFCGPVLGGAFAAALLVSVATVGLEADLQHVEPK 112
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+R+SL G++R++S V K+ + + LVG ++ + E + L
Sbjct: 113 LERISLVAGMQRLFSWRPWVELAKTLLIVCLVGALVWSDVEEAAPDAMKTAWLGGAEGLS 172
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A V + + + L V D ++ + L M+++E+K E K S G+P K ++
Sbjct: 173 LAVAHVSGLASRLACLLVVLGVGDYALAWRRHIKDLMMTREEMKREYKDSEGDPRHKGQR 232
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K++ R + +AT ++ NPTH A+ALRY E +AP LVAK + A+ MR+
Sbjct: 233 KALHRQLAQGGAARGVQKATAVVVNPTHIAVALRYDVDECEAPYLVAKAREGDARAMREQ 292
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
A I + + LARSL + IP Y+A A ++
Sbjct: 293 ARRLGIAVVRDIPLARSLIH-YDVGEPIPEELYQAAAVVLR 332
>gi|1216382|gb|AAB00549.1| FlhB' [Treponema pallidum]
Length = 366
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 81/338 (23%), Positives = 165/338 (48%), Gaps = 9/338 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ ++E P+ K+ A EG P S++ + +L L + L
Sbjct: 23 EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
AT +++ + + +L +P + ++ G+ + ++Q + ++ ++
Sbjct: 83 FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138
Query: 125 PSFKRVSLR--EGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P FK++S KR +S L N +KS +KI + + ++ + F + + +
Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198
Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
+++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ G+P+
Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++ + +S +R T+ A ++ITNPTH+A+A++Y AP +VAKG + A
Sbjct: 259 VRSYVRKQMQSLVRESAR-NTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
+++++A E I I E LAR+L+ QV I +P ++
Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYF 355
>gi|15803385|ref|NP_289418.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 EDL933]
gi|15832975|ref|NP_311748.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. Sakai]
gi|168747673|ref|ZP_02772695.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|168753787|ref|ZP_02778794.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|168759977|ref|ZP_02784984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|168766842|ref|ZP_02791849.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168775726|ref|ZP_02800733.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|168778863|ref|ZP_02803870.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|168799982|ref|ZP_02824989.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|195936469|ref|ZP_03081851.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. EC4024]
gi|208806601|ref|ZP_03248938.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
gi|208813845|ref|ZP_03255174.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208818835|ref|ZP_03259155.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209399671|ref|YP_002272329.1| hypothetical protein ECH74115_4137 [Escherichia coli O157:H7 str.
EC4115]
gi|217327346|ref|ZP_03443429.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|254794804|ref|YP_003079641.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. TW14359]
gi|12517360|gb|AAG57977.1|AE005514_14 putative integral membrane protein-component of type III secretion
apparatus [Escherichia coli O157:H7 str. EDL933]
gi|13363193|dbj|BAB37144.1| type III secretion protein EprS [Escherichia coli O157:H7 str.
Sakai]
gi|187768810|gb|EDU32654.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|188017892|gb|EDU56014.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|189003231|gb|EDU72217.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189358704|gb|EDU77123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189363851|gb|EDU82270.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189369301|gb|EDU87717.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|189377676|gb|EDU96092.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|208726402|gb|EDZ76003.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
gi|208735122|gb|EDZ83809.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208738958|gb|EDZ86640.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209161071|gb|ACI38504.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4115]
gi|217319713|gb|EEC28138.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|254594204|gb|ACT73565.1| putative integral membrane protein-component of type III secretion
apparatus [Escherichia coli O157:H7 str. TW14359]
gi|320189195|gb|EFW63854.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. EC1212]
gi|326339064|gb|EGD62879.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. 1044]
gi|326343055|gb|EGD66823.1| surface presentation of antigens protein SpaS [Escherichia coli
O157:H7 str. 1125]
Length = 373
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 77/344 (22%), Positives = 157/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|293416105|ref|ZP_06658745.1| type III secretion protein SctU [Escherichia coli B185]
gi|291432294|gb|EFF05276.1| type III secretion protein SctU [Escherichia coli B185]
Length = 370
Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats.
Identities = 77/344 (22%), Positives = 156/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGFGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRREC 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|111115097|ref|YP_709715.1| flagellar biosynthesis protein FlhB [Borrelia afzelii PKo]
gi|110890371|gb|ABH01539.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
Length = 372
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ ++ + + F S V+ + +IQ + ++P
Sbjct: 81 ASKLSEVMKMSVYAMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ + + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|257487237|ref|ZP_05641278.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|238577784|gb|ACR46695.1| HrcU [Pseudomonas syringae pv. tabaci]
gi|331009149|gb|EGH89205.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 359
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++ L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + +L + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRLVSSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N++N + S +K + +G + + + ++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILHVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LSHEILNQEPSAAPHPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|216263954|ref|ZP_03435948.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
gi|215979998|gb|EEC20820.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
Length = 372
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + F S V+ + +IQ + ++P
Sbjct: 81 ASKLPEVMKMSVYAMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ + + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|76152319|gb|ABA39820.1| HrcU [Erwinia pyrifoliae]
Length = 360
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 160/357 (44%), Gaps = 14/357 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK++DA +G P S++ + +L G+ + +
Sbjct: 1 MAE------KTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + LA Q +S +V + + + + + + I IQ P+
Sbjct: 55 LMRLPLARIGQPFELALSEVV---SSALVLVATFCGLTVAIAALLRIIGGWIQYGPLFAP 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP F R++ K+++S+ L + VK + TI + LT + ++ +
Sbjct: 112 EALKPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAICTIFYLVLTPDLESLARLAYGD 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
S + +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P
Sbjct: 172 LDSFWPAVEVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
+K + ++A + A +++ NPTHYA+AL Y P ++ KG+
Sbjct: 232 HMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGE 291
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ AK + A + NIP+ LAR+L++ IP +AVAQ+ + +
Sbjct: 292 DGEAKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQVYRVLRQLE 347
>gi|71737972|ref|YP_273541.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|289623686|ref|ZP_06456640.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647640|ref|ZP_06478983.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
aesculi str. 2250]
gi|42562005|gb|AAS20447.1| HrcU [Pseudomonas syringae pv. phaseolicola]
gi|71558525|gb|AAZ37736.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322958|gb|EFW79048.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329919|gb|EFW85907.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330871290|gb|EGH05999.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330984961|gb|EGH83064.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 359
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++ L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + +L + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRLVSSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N++N + S +K + +G + + + ++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|271500418|ref|YP_003333443.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
Ech586]
gi|270343973|gb|ACZ76738.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
Ech586]
Length = 359
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 77/348 (22%), Positives = 159/348 (45%), Gaps = 8/348 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+SKK++DA +G S++ A L +L G+ + + + + L+
Sbjct: 3 EKTEKPTSKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDNGMSKLQALMQLPLSR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + + S + + + ++ I IQ P+ + +K F
Sbjct: 63 LSDPFVHAADEV---FSEALSLLSTFCLLTISVALLMRIVGGWIQYGPLFAVEALKIDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ IK+++++ L + + S +K +G + + + +++ + +
Sbjct: 120 RLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELAYGDLTAFWKGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ V L + L +LD G + + + +MS ++I++E K S G+P +K +KS
Sbjct: 180 ESVLKSVARTTLSSLLALAILDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A+ + + A +++ NPTHYA+AL Y + P ++ KG++ AK +
Sbjct: 240 VAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDEQAKALI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A N+P+ LAR+L++ VP IP ++VAQ+ +
Sbjct: 300 ARAQHANVPVIRFIWLARTLYR-VPEGHYIPRHTLQSVAQVYRVLRQL 346
>gi|225551932|ref|ZP_03772872.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
gi|225370930|gb|EEH00360.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
Length = 372
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ L + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFLASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|289810262|ref|ZP_06540891.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 247
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/215 (32%), Positives = 125/215 (58%)
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++S +K+ +K LVG + L ++ M+ ++ +P + +A V ++
Sbjct: 1 MFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALL 60
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
++L + + D+ + KL+MS+Q+I+DE K+S G+P +K + + + R+ + +M
Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRM 120
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
ME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P E P
Sbjct: 121 MEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAP 180
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215
>gi|50121004|ref|YP_050171.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560427|gb|AAS20387.1| HrcU [Pectobacterium atrosepticum]
gi|49611530|emb|CAG74978.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 359
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/349 (20%), Positives = 152/349 (43%), Gaps = 7/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+EDA +G S++ + L +L + + + + + L
Sbjct: 3 EKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + ++ A L + + ++ I +Q P+ +K
Sbjct: 63 LGTPFAQVAKEV---FHDAAVLAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALKLDLN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ LV + + +K +++GT+ + +++ + H
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS
Sbjct: 180 KALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239
Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + A +++ NPTHYA+ L Y + P ++ KG+N A+++
Sbjct: 240 LAHELANESAAPRPKPKLEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENKAAQELI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IP+ L R+L++ P IP +AVAQ+ + +
Sbjct: 300 AQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQVYRVLRQLE 348
>gi|58426834|gb|AAW75871.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 333
Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 153/309 (49%)
Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
++ L + GI + S E+ + L L +++P + + +
Sbjct: 1 MFALMALARGIGDGATAWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLA 60
Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
G+ L+ + + P +++ G+KR++ N+L +KS ++++ VG +
Sbjct: 61 AGLAGPLLMSGLHFSGKAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASF 120
Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
++++ + +S + + + +L + L +D + W KLKM
Sbjct: 121 CISKSLPGLRSLVSQPLEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKM 180
Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
+++EIK E+K+S G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y
Sbjct: 181 TREEIKREMKESEGSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGG 240
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
+ AP++VAKG + +A ++R+ +H + I P LAR+L+++ + IP Y VAQ
Sbjct: 241 KMRAPIVVAKGVDEMAFRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQ 300
Query: 345 LIYKIYHKK 353
++ +Y +
Sbjct: 301 VLSYVYQLR 309
>gi|225549000|ref|ZP_03769975.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
gi|225370226|gb|EEG99664.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 160/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ ++ +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLVVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|216264909|ref|ZP_03436901.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
gi|221217819|ref|ZP_03589287.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
gi|215981382|gb|EEC22189.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
gi|221192496|gb|EEE18715.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ L + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFLASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|188532663|ref|YP_001906460.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|259909721|ref|YP_002650077.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
gi|188027705|emb|CAO95558.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|224965343|emb|CAX56875.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
gi|283479807|emb|CAY75723.1| Type III secretion protein HrcU [Erwinia pyrifoliae DSM 12163]
Length = 360
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 8/349 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G P S++ + +L G+ + + + + LA
Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGLVETVLALDDVGMQKLQALMRLPLAR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q +S +V + + + + + + I IQ P+ +KP F
Sbjct: 63 IGQPFELALSEVV---SSALVLVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALKPDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ L + VK + TI + LT + ++ + S
Sbjct: 120 RLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLARLAYGDLDSFWPAV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + +
Sbjct: 180 EVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239
Query: 249 IARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A + A +++ NPTHYA+AL Y P ++ KG++ AK +
Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + NIP+ LAR+L++ IP +AVAQ+ + +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQVYRVLRQLE 347
>gi|224533751|ref|ZP_03674339.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
gi|224513044|gb|EEF83407.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ L + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFLASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|224533155|ref|ZP_03673755.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
gi|224511882|gb|EEF82283.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ L + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFLASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|225550105|ref|ZP_03771065.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
gi|225369217|gb|EEG98670.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|15594617|ref|NP_212406.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi B31]
gi|218249479|ref|YP_002374795.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
gi|223888974|ref|ZP_03623565.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
gi|226321590|ref|ZP_03797116.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
gi|3023773|sp|Q44760|FLHB_BORBU RecName: Full=Flagellar biosynthetic protein flhB
gi|1165257|gb|AAA85596.1| FlhB [Borrelia burgdorferi]
gi|2688194|gb|AAC66676.1| flagellar biosynthesis protein (flhB) [Borrelia burgdorferi B31]
gi|218164667|gb|ACK74728.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
gi|223885790|gb|EEF56889.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
gi|226232779|gb|EEH31532.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
Length = 372
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|258626191|ref|ZP_05721039.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
gi|258581546|gb|EEW06447.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
Length = 255
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 129/230 (56%)
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P +++ G KR++ + + V +KS +K++LV + + + +
Sbjct: 1 MPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQ 60
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P +K
Sbjct: 61 NIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVK 120
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A K+
Sbjct: 121 GRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKI 180
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 181 REIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 230
>gi|312148485|gb|ADQ31144.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi JD1]
Length = 372
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|195941374|ref|ZP_03086756.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi 80a]
gi|312149299|gb|ADQ29370.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi N40]
Length = 372
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|213416632|ref|ZP_03349776.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 338
Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats.
Identities = 73/330 (22%), Positives = 143/330 (43%), Gaps = 3/330 (0%)
Query: 23 LNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
EG S E + ++A +Y FF I + + L + ++ +
Sbjct: 3 RKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSH 62
Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
L SA + G+++ +GS +Q V+ + + ++ K+I+S+
Sbjct: 63 ALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSL 119
Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
+++V KS +K+I++ I T + ++ + + ++ F
Sbjct: 120 HSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAF 179
Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262
+ +LD + Y++ LKMSK ++K E K G+P +K R++ + + ++
Sbjct: 180 YIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSV 239
Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
++ ++ NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LAR
Sbjct: 240 KQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELAR 299
Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
SLF +V IP ++ VA L+ +
Sbjct: 300 SLFFEVERGDKIPETLFEPVAALLRMVMKI 329
>gi|219684572|ref|ZP_03539515.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
gi|219685776|ref|ZP_03540587.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
gi|219671934|gb|EED28988.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
gi|219672715|gb|EED29743.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
Length = 372
Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 161/350 (46%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + F + V+ + ++ +IQ + ++P
Sbjct: 81 ASKLPEVMRMSVYSMGFAYIR---AIIGYVVLFFIAALVVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ + + K +S N KS +K++++ I + N + +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVVLSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|28868600|ref|NP_791219.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968267|ref|ZP_03396411.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
T1]
gi|301381804|ref|ZP_07230222.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
Max13]
gi|302061995|ref|ZP_07253536.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
K40]
gi|302135077|ref|ZP_07261067.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851838|gb|AAO54914.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926905|gb|EEB60456.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
T1]
gi|330963058|gb|EGH63318.1| type III secretion protein HrcU [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015106|gb|EGH95162.1| type III secretion protein HrcU [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 359
Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 7/348 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ +LA L + + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + I + LS + + L M+ + S +Q + +K K
Sbjct: 63 IERPFMSAVELIASEGLSVVLSFTLCSV---GLAMLMRLISSWVQIGFLFAPKALKLDIK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+++S N++N + S +K + +G + + T++ +++ + L+
Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ VL +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 IELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IP+ + LAR+L+K V + IP AV + + +
Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346
>gi|330872921|gb|EGH07070.1| type III secretion protein HrcU [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 359
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 7/348 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ +LA L + + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + I + LS + + L M+ + S +Q + +K K
Sbjct: 63 IERPFMSAVELIASEGLSVVLSFTLCSV---GLAMLMRLISSWVQIGFLFAPKALKLDIK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+++S N++N + S +K + +G + + T++ +++ + L+
Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ VL +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 IELFQHVLRVILGLLLVIALVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A + + A A +++ NPTHYA+AL Y E P++ KG++ A +
Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IP+ + LAR+L+K V + IP AV + + +
Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346
>gi|224534194|ref|ZP_03674772.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
gi|224514296|gb|EEF84612.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
Length = 372
Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats.
Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E ++ S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSNEINIAISLLLLFALFFFMLSYFALDLVAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + F S V+ + +IQ + ++P
Sbjct: 81 ASKLPEVMKMSVYAMGFAYIR---SIVGYVVLFFFASLAVNFFINIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIESNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYTNVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|226320572|ref|ZP_03796132.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
gi|226233991|gb|EEH32712.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
Length = 372
Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S + N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+ +++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVVIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|51598532|ref|YP_072720.1| flagellar biosynthesis protein FlhB [Borrelia garinii PBi]
gi|51573103|gb|AAU07128.1| flagellar biosynthesis protein [Borrelia garinii PBi]
Length = 372
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 161/350 (46%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + + F + V+ + ++ +IQ + ++P
Sbjct: 81 ASKLPEVMRMSVYSMGFAYIR---AIIGYVVLFFIASLVVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ + + K +S N KS +K++++ I + N + +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + VLD + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVLDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++I NP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKDRMRVVLSTNLRVAIPQADVVIVNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVYSI 367
>gi|261344588|ref|ZP_05972232.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
4541]
gi|282567502|gb|EFB73037.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
4541]
Length = 361
Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats.
Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI+D+ +G + S++ ++ + + + +Y + + +L
Sbjct: 3 EKTEKPTDKKIKDSAKKGQSFKSKDTVAAIVLVVGALVI--DGAASLYELGGLMKRILLH 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+++ LL S LV+P L+ + G L+Q L +K F
Sbjct: 61 PYDIHIDN------LLWQFSKIFLSLVLPILIACFLSGTIVSLLQSRFRLATEAIKIDFT 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ G K+I+S+N+L +K+ + +++ + + ++
Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLLVFSISAATFFVVWRQEIFMLYRTTINGMMSSW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + V+D + + LKM KQE+K E K + G+P IK+ +K
Sbjct: 175 VTLCILFVFVFLAVAVFIVVIDAIAEFFLFIKNLKMEKQEVKKEFKDNEGDPHIKSARKG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + ++ +T I+ NPTH A+ + Y P L+AK + + AK + K A
Sbjct: 235 LHQEILSEEVKSNVRNSTFIMANPTHIAMLIYYDSNIAPLPFLMAKMRGVQAKAIIKYAQ 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+ +P+ + LAR +++ +S I ++V Q+I + ++
Sbjct: 295 QQGVPVVRDIILARQIWRTYKKDSFIDDQGLQSVMQIITWLIRVEL 340
>gi|268592372|ref|ZP_06126593.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
1131]
gi|291312158|gb|EFE52611.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
1131]
Length = 373
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 73/346 (21%), Positives = 151/346 (43%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D+ +G + S+++ ++ + +Y + + + S
Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDSVAAIVLVVSAFVI--EGVSSLYELGGLMRKIFLS 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
T+ K++ LL +V+P L + G L+Q L +K F
Sbjct: 61 PTEIKID------ALLWQFFTIFLSIVLPVLFTCFLSGTIISLLQSRFRLASEAIKLDFT 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ G K+I+S+N+L +K+ + +I+ I + + + ++
Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLIVFIISILVFFIVWRKDIFMLYRTMINGMISQW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+++ L + ++D + + LKM KQE+K E K + G+P IK+ ++
Sbjct: 175 VSLCVTFIVVFLAVALIIILVDAIAEFFLYIKNLKMEKQEVKKEYKDNEGDPHIKSARRG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + ++ +T ++ NPTH AL + Y P L +K + AK + K A
Sbjct: 235 MHQELLSEEVKSNVRNSTFVMANPTHIALLIYYDSNIAPLPFLFSKSKGSQAKAIIKYAE 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+ +P+ + LAR +++ +S I + V Q+I + ++
Sbjct: 295 QQGVPVIRDIVLARQIWRSYKNDSFIDEKGLEDVMQIISWLIRIEL 340
>gi|14588842|emb|CAA68101.2| HrcU protein [Pantoea agglomerans]
Length = 360
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 8/341 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK++DA +G P S++ + +L G+ + + + + LA
Sbjct: 3 EKTEKPTEKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q + ++ + L + + + + I IQ ++ +KP F
Sbjct: 63 LNQPFEQAVNEVA---GSALLLVTTFFGITVAVAALLRIIGGWIQYGLLIAPETIKPDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ K+++S+ L + + + +K + TI + L + + + S
Sbjct: 120 RLNPMNQFKQMFSVKKLTDMLNNILKAAAICTIFYLVLNPDLDALSRLAYGDLDSFWPAV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +V LL + LT+LD G + + + +MS +I+DE KQS G+P +K + +
Sbjct: 180 EVMLTRVSRQTLLTLLILTLLDFGLQKYFFLKQQRMSHHDIRDEYKQSEGDPHMKGHRHA 239
Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+A+ + E +A +++ NPTHYA+AL Y P +V KG++ AK +
Sbjct: 240 VAQELLNAPASPVKREPLEKADLLLVNPTHYAVALYYRPALTPLPRIVCKGEDNEAKTLI 299
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
A + NIP+ LAR+L++ IP +AVAQ+
Sbjct: 300 ARAQKANIPVIRFVWLARTLYRS-EEGQLIPRHTLQAVAQV 339
>gi|17549085|ref|NP_522425.1| type III secretion system protein HrcU [Ralstonia solanacearum
GMI1000]
gi|547676|sp|P35652|HRCU_RALSO RecName: Full=Hypersensitivity response secretion protein hrcU
gi|6066705|emb|CAB58251.1| HrpN protein [Ralstonia solanacearum]
gi|17431336|emb|CAD18015.1| hrp conserved hrcu transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|1097284|prf||2113360K hrpN gene
Length = 357
Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ R + + ++H +L + +P +F + + Q VL+ V+
Sbjct: 62 DVDSSR--HPLMTLKQTISHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K + V + + +++ + I
Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LARSL++ V + +P ++ VA+++ +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342
>gi|330819403|ref|YP_004348265.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
gladioli BSR3]
gi|327371398|gb|AEA62753.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
gladioli BSR3]
Length = 359
Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 4/343 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G S + + S+ + +++ + S+ + L
Sbjct: 2 SDEKTEEPTDKKLRDARKDGQVSKSSDLADAISMTVAIGFVMAAGAHLRDSMRQLVMSAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
T I + L A V+P L M G+ +Q + L V P+
Sbjct: 62 DFVTTE--HSIPDMFDRLYRFGGIALLAVVPLALAAAMAGLMGSAMQVGLQIALKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+I+SI ++ K VK L+ ++ + + + + I +
Sbjct: 120 LNSLNPGEGLKKIFSIKTVIETAKMIVKAALIFAVMWVVIRGLFPLVSGSIYQPLAELSA 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K++++ + + D+ + ++KMSK E+K E K G+P+IK +
Sbjct: 180 MYWGILVKLMMIAAVIFIVVGAGDVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K IAR + +RA +++ NPTHYA+ALRY E+ PV++AKG + A +R+
Sbjct: 240 KRIAREMA-NSPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRA 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI P +AR+L+K V ++ IP V ++ +A ++ +
Sbjct: 299 AAEAEVPIVGNPPVARALYK-VGVDEPIPEVLFETIAAILRWV 340
>gi|3282784|gb|AAC25072.1| HrcU [Pseudomonas syringae pv. phaseolicola]
Length = 359
Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 68/347 (19%), Positives = 148/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++ L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVISEITLGLADDSVDRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + +L + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRLVSSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N++N + S +K + +G + + + ++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239
Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + A A +++ NPTHYA+AL Y E P++ KG++ +
Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEGLALIA 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + IP+ + L R+L++ + IP +AV + +
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345
>gi|328948397|ref|YP_004365734.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
2489]
gi|328448721|gb|AEB14437.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
2489]
Length = 365
Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 174/349 (49%), Gaps = 9/349 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ KTE S +K+ A EG S+E + L + L+ + +
Sbjct: 9 EDEGKTEEASEQKLRKARKEGRIAKSQELNGTVVFLFVVAVLILLAPWFYKKICEMMIFY 68
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
+ T +K++D L +L +V+P L ++ G+ L+Q + ++
Sbjct: 69 FNNVTAQKIDDARFYYIFLRNL----LPIVLPLSLAGILAGVIINLVQNRGFIFTTKTIE 124
Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
P F ++ + G K ++S+ L N KS +K+ ++ + + + + L F+ A
Sbjct: 125 PKFSKIVPKFGEYFKKTLFSMMGLFNIAKSVLKVAIIVAVAVLLIRLDLAKTLGFLKAGG 184
Query: 182 HSILYHAFF-TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + V ++L++ + + + V D ++ ++KM+KQE+K+E K+S G+P
Sbjct: 185 IDLALRSVSGMVAQLLVVSAVILIVIGVFDYVMQRREFKEQMKMTKQEVKEEFKESEGDP 244
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K R +S + + M +A + ++ITNPTHYA++L++ Q + DAP++ AKG + A
Sbjct: 245 EVKGRLESAQKEMLSQNMPKAVRESDVVITNPTHYAVSLQWKQEQQDAPMITAKGTDNTA 304
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+ M+KIA E+++PI E LAR L+ + IP + +A+A + ++
Sbjct: 305 QTMKKIAAENDVPIIENRPLARGLYADTEVGDIIPTSYLRAIAAVYAQV 353
>gi|219566954|dbj|BAH04985.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
Length = 357
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ R + + +++ +L + +P +F + + Q VL+ V+
Sbjct: 62 DVDSSR--HPVMTLKQTISYFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K + V + + +++ + I
Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LARSL++ V + +P ++ VA+++ +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPESLFETVAEVLAWV 342
>gi|332559798|ref|ZP_08414120.1| FlhB2 [Rhodobacter sphaeroides WS8N]
gi|332277510|gb|EGJ22825.1| FlhB2 [Rhodobacter sphaeroides WS8N]
Length = 359
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 172/344 (50%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D ++K PS +K+E+A +G P S++ ++ L + +
Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LL A + + L +A V+P LL + G+ L QR V+ + +
Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ A E +PI +P AR+L V I I P Y+AVA +
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346
>gi|221640820|ref|YP_002527082.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides KD131]
gi|221161601|gb|ACM02581.1| Type III secretion exporter [Rhodobacter sphaeroides KD131]
Length = 359
Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 172/344 (50%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D ++K PS +K+E+A +G P S++ ++ L + +
Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LL A + + L +A V+P LL + G+ L QR V+ + +
Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ A E +PI +P AR+L V I I P Y+AVA +
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346
>gi|168785695|ref|ZP_02810702.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|261226164|ref|ZP_05940445.1| putative integral membrane protein-component of type III secretion
apparatus [Escherichia coli O157:H7 str. FRIK2000]
gi|261256582|ref|ZP_05949115.1| putative integral membrane protein-component of type III secretion
apparatus [Escherichia coli O157:H7 str. FRIK966]
gi|189374061|gb|EDU92477.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
Length = 373
Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 156/344 (45%), Gaps = 11/344 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA + SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKEQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A E
Sbjct: 236 HQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IPI + LAR ++ + ++ + +++ + +
Sbjct: 296 IGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 336
>gi|126463741|ref|YP_001044855.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
17029]
gi|126105405|gb|ABN78083.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17029]
Length = 359
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 93/344 (27%), Positives = 173/344 (50%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D ++K PS +K+E+A +G P S++ ++ L + +
Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGEIGST 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LL A + + L +A V+P LL + G+ L QR V+ + +
Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +R+S G++ + LV+F+KSFVK++LVG ++ + +L + P
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDILGLLWMEPKIA 182
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ A E +PI +P AR+L V I I P Y+AVA +
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346
>gi|1185062|gb|AAB58971.1| flagellar export protein [Borrelia burgdorferi]
Length = 372
Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 6/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +TE P+ +K + A EG S E + S+L F S + +
Sbjct: 21 DDEGRTELPTDQKKQKASEEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ + + F S V+ + +IQ + ++P
Sbjct: 81 AIKLPEVMRMSVYTMGFAYIR---SIMGYVVLFFFASLAVNFFVNIIQVGFFITFKSLEP 137
Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+ ++ + K +S N KS +K++++ I + N +
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVYSI 367
>gi|299069231|emb|CBJ40491.1| Hypersensitivity response secretion protein hrcU, Type III
secretion exporter [Ralstonia solanacearum CMR15]
Length = 354
Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L
Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDIAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ R + + + H +L + +P +F + + Q VL+ V+
Sbjct: 62 DVDSSR--HPVMTLKQTIGHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+S+ ++++ +K +K + V + + ++ + I
Sbjct: 120 MNAINPASGLKRIFSVRSMIDLIKMIIKGVAVAAAVWKLILILMPAIVGAAYQSVMDIAE 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++L L +D G + +MSK E+K E K S G+P IK +
Sbjct: 180 IGITLLVRLLAAGGGLFLILGAVDFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239
Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+
Sbjct: 240 KKLARELAEEAKPKQSVAGAQALVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A IPI P LARSL++ V + +P ++ VA+++ +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342
>gi|77464899|ref|YP_354403.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides 2.4.1]
gi|77389317|gb|ABA80502.1| flagellar biosynthesis pathway, component FlhB [Rhodobacter
sphaeroides 2.4.1]
Length = 359
Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats.
Identities = 93/344 (27%), Positives = 172/344 (50%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
D D+K PS +K+E+A +G P S++ ++ L + +
Sbjct: 3 DGEDDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
LL A + + L +A V+P LL + G+ L QR V+ + +
Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDIFGLLWMEPKIA 182
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
+++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ A E +PI +P AR+L V I I P Y+AVA +
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346
>gi|323171038|gb|EFZ56687.1| flhB HrpN YscU SpaS family protein [Escherichia coli LT-68]
Length = 347
Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 80/320 (25%), Positives = 151/320 (47%), Gaps = 3/320 (0%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
L +S+ A + + F V + +++ + I L H L +
Sbjct: 1 MGLAASLFAAFVVISSSFPWYADFVRESFISV--HQYAQEINNPEVIGQFLRHHLLILGK 58
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
++ L + + S L+ + + P F ++S +GI R++S +L K V
Sbjct: 59 FILTLLPMPAAALL-SSLVPGGWLFLPKKILPDFSKISPLKGIGRLFSSEHLAETGKMTV 117
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
K ++V ++ +SL N+ + L + + V+ ++ ++D+
Sbjct: 118 KSVVVLVMLWVSLRNNFASFLGLQALPFKLAMNEGLSLYACVMRNFVILFIFFALIDVPL 177
Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
+ + LKM+KQE+K+E K G P +K R + + R ++ + +A ++ITNPT
Sbjct: 178 AKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPT 237
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
HYA+AL+Y + AP +VAKG + IA +R++A E+ + + E P LARS++ +N
Sbjct: 238 HYAVALQYDSSRAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQ 297
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+A+A ++ + K
Sbjct: 298 IPFQLYRAIAHVLTYVLQMK 317
>gi|313901501|ref|ZP_07834951.1| type III secretion exporter [Thermaerobacter subterraneus DSM
13965]
gi|313468239|gb|EFR63703.1| type III secretion exporter [Thermaerobacter subterraneus DSM
13965]
Length = 407
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 2/336 (0%)
Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--I 77
A G S + +LA V L A + D +
Sbjct: 1 RQARRRGQVARSADLPAALVLLALAALAGTLVPLAARQVAGLARRLWAPSPAPLPADWTV 60
Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
+ L + L P L + + +Q + P ++RV+ G++
Sbjct: 61 AQAADLGRVVLLGTLAAAGPLALAGWVVAAAAGFVQAGGLFQPGLAAPRWERVNPLAGLQ 120
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
R+ S LV +K+ VK+ ++ + +L ++ A ++L A +++ +L
Sbjct: 121 RLVSRRALVELLKAPVKLAVMAAALGPALLGAGMQLITATGAPLPAMLGLAGRSLQGLLW 180
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
L + + D + + + L+M+ QE K + K++ G+P+++ R + R R +
Sbjct: 181 RGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRIRQRQRHLARRR 240
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M++ RA +++TNPTH A+ALRY APV+VAKG + +A ++R +A +H +P+ EE
Sbjct: 241 MLQEVPRADVVVTNPTHVAVALRYDPARMGAPVVVAKGVDFLALRIRALAEQHGVPVMEE 300
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
P+LAR+L++ V + IP FY AVA+++ ++ +
Sbjct: 301 PALARALYRAVEVGREIPAAFYVAVAEVLAFVWRLR 336
>gi|326794359|ref|YP_004312179.1| type III secretion protein, YscU/HrpY family [Marinomonas
mediterranea MMB-1]
gi|326545123|gb|ADZ90343.1| type III secretion protein, YscU/HrpY family [Marinomonas
mediterranea MMB-1]
Length = 368
Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 147/343 (42%), Gaps = 10/343 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + KKI+D+ +G S++ + L +L G+ ++ + L+
Sbjct: 3 EKTEKATPKKIKDSRKKGQVGQSQDIHKLMILGVLLEVVLGMVDSGVRNLEKLTSIPLSM 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q + V + A+ +V+ L + ++F + +Q ++ +K F
Sbjct: 63 INQPFQYALQATV---VNCLTIAASMVMMALGIAVLFRLLGGWLQFGFLIAPEALKIDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ +K ++S L SF+K I +G ++ LT ++ + +
Sbjct: 120 RLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLALTDLDTTWRGI 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
KV + + + +D G + + LKMSK ++K E K G+P +K ++KS
Sbjct: 180 AELFLKVERACVGVLIVIASIDFGMQKYFHFKSLKMSKDDVKQEYKNQEGDPHLKGQRKS 239
Query: 249 IARSRIRHK------MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
A + A ++ NPTH+A+AL Y E P ++ KGQ+ A
Sbjct: 240 EAVRLATEEPSPAPSAKPELGEADTLVVNPTHFAVALYYRSEETPLPKILTKGQDQDALD 299
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
+ + A E IP+ LAR+L+K+ IP + VA++
Sbjct: 300 LIEQAKEKGIPVIRFIWLARTLYKEQE-GHYIPRTTLRYVAKI 341
>gi|302185355|ref|ZP_07262028.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
syringae 642]
gi|256259405|gb|ACU65042.1| HrcU [Pseudomonas syringae pv. syringae]
Length = 362
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 148/347 (42%), Gaps = 7/347 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + + K+I DA G S++ ++ L + + S + + +
Sbjct: 3 EKNQDATPKQIRDARKRGQVAQSQDLPKLLILVVVSEITLGMADVSMEKLQSLIKLSMTR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q L + +V T + + + + M+ + +Q + +KPS +
Sbjct: 63 MDQPFLRTVGEVV---TQGVWLVAAFAVLSVGVAMLMRLLGSWMQFGVLFAPEALKPSME 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K+++++ +L + +K ++ ++ + + T++ + ++ + +
Sbjct: 120 KLNPFSHLKQMFTLRSLTTSLSGIIKAAIIAVVMWMIVEPALGTLVSLVHSDLVTFWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++L + + L V D + +L+MS ++IK E K S GNP IK ++
Sbjct: 180 SKLFHQILRVTCGILLVLAVADFAIQKYFHAKQLRMSMEDIKQEYKNSEGNPEIKGHRRQ 239
Query: 249 IARSRIRHKMME---ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+A + A ++I NPTHYA+AL Y E P + K + A + +
Sbjct: 240 LAHELLNQAPKAPPKPVKDADVLIVNPTHYAVALYYRPGETALPRIHCKNIDAGALALIE 299
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A IP+ + LAR+L++ VP + IP +AVAQ+ I
Sbjct: 300 EAKRERIPVVQCIWLARTLYR-VPQDRFIPRDTLQAVAQIYGVIKQL 345
>gi|167584007|ref|ZP_02376395.1| type III secretion system protein [Burkholderia ubonensis Bu]
Length = 361
Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + + S +T + L +
Sbjct: 14 LKKVREKGQVAKSKDVADAVTLAAVIGVMTAGESMLTGGLTRAIRTALDFVQGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P ++ ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMPKFDALNPMNGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ +I +T + ++ + + + + K+L +
Sbjct: 132 IFSLKSLLELVKMIVKAVVLACVIWKMMTSLFPLVVASVYEPTPQLSRVLWTVLMKLLGV 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
++L + D + + +M+K+E K E K+S G+P K ++ +AR
Sbjct: 192 VVLVVVVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
P +AR+L++ V ++AIP ++ VA ++ +
Sbjct: 312 PPVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|237751072|ref|ZP_04581552.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
gi|229373517|gb|EEO23908.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
Length = 372
Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 96/355 (27%), Positives = 168/355 (47%), Gaps = 10/355 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KT APS +KI+ A EG+ S + ++ L+ L F +
Sbjct: 1 MAE----EEKTHAPSQRKIQKAREEGSVAKSPDLVGLVGLVVGLMLLFIIFPFWV----K 52
Query: 61 DLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L T+ L D + I + + A+ +P M+ GI + Q +L
Sbjct: 53 IFKGLYVECTKLFLVDFNMHTIFAITLTILKVAALCAMPFFFALMVAGIIGNVAQFGFLL 112
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ +KP +++ +G K ++S+ L++ +K+ + + + +
Sbjct: 113 SFKIIKPKVDKINPIKGAKNLFSLKKLLDGFIITLKVFIAFAVGFFIFVGFLDEVANISM 172
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ L + ++ +L + +LD +Q+ L+MSKQE+KDE KQ G
Sbjct: 173 SPLKEQLTWFYQKALILIGALLFLFLVMGILDFLIKRYQYIKSLRMSKQELKDEFKQQEG 232
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
N +K + + I +KMM A A +++TNPTHYA+ALR+ APV+VAKG +
Sbjct: 233 NQEVKAKIRQIMMKNAMNKMMSAIPSANVVVTNPTHYAVALRFNSETESAPVVVAKGIDH 292
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +++ IA EH I I E P LAR L++ V ++ IP ++AV +L ++ +
Sbjct: 293 LAVRIKGIAREHEILIIENPPLARELYRLVDVDRMIPGEMFEAVVELFQQVAKLE 347
>gi|115377814|ref|ZP_01465002.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
gi|115365146|gb|EAU64193.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
Length = 269
Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 67/263 (25%), Positives = 131/263 (49%), Gaps = 1/263 (0%)
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
L P + + +Q + ++ + P ++++ +GIK I+S +V +K
Sbjct: 1 MLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIK 60
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
+ VKI + ++ + + ++ + + +L V +V + L ++ D
Sbjct: 61 NLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFD 120
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
I W + ++ MSK ++K E K+S G+P K +K + + + MEA A +I+T
Sbjct: 121 IWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVT 180
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NP H A+AL+Y + ++ AP ++AKG + A++++ IA E ++P LA +L + V +
Sbjct: 181 NPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDV 239
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
IP Y AVA+++ +Y K
Sbjct: 240 GQDIPEELYDAVAEVLNFVYGLK 262
>gi|238023710|ref|YP_002907942.1| type III secretion system protein HrcU [Burkholderia glumae BGR1]
gi|237878375|gb|ACR30707.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
glumae BGR1]
Length = 352
Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 165/343 (48%), Gaps = 4/343 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
D KTE P+ KK+ DA +G A S + + S+ A + +++ + S+ + L
Sbjct: 2 SDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASAHLRDSMRQLVVSAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + L A V+P L + G+ +Q + L V P+
Sbjct: 62 DFVSTD--HSLPDMFDRLYRFGGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVMPN 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG+K+I+S+ ++ +K VK L+ ++ + + + I +
Sbjct: 120 LNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVRGLIPLVSGAIYQPLAELSA 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + K++++ + + D+ + ++KMSK E+K E K G+P+IK +
Sbjct: 180 MYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGER 239
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ IAR + +RA +++ NPTHYA+ALRY E+ PV++AKG + A +R+
Sbjct: 240 RRIAREMA-NAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRA 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A E +PI P +AR+L+K V ++ IP ++ +A ++ +
Sbjct: 299 AAEAEVPIVGNPPVARALYK-VGLDEPIPDALFETIAAILRWV 340
>gi|15042145|gb|AAK81926.1|AF292566_10 RscU [Pseudomonas fluorescens]
Length = 365
Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats.
Identities = 70/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
K S+KK+ D +G S++ + ++ A LF + + +
Sbjct: 2 SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L+ TQ + ++F + S + +++ + + + S +Q + +K
Sbjct: 62 PLSRLTQPFTRALEEVLFEGMTVFFSFALVMV---GVAITTKLISSWMQFGLLFAPETLK 118
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F R++ +K+++S L+N + S K L+ +I+ + + + T+++ +++ S
Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLDTLINLATSDLQSY 178
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ R +L + L + L ++D+ H + +++M++ E+ E K G+P +K
Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238
Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++S+A + + + + +++ NPTH+A+AL Y + P+LV+KG + A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
+ + A ++P+ + LAR+L+ + ++IP +AVA +
Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341
>gi|229588264|ref|YP_002870383.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
gi|229360130|emb|CAY46987.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
Length = 365
Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
K S+KK+ D +G S++ + ++ A LF + + +
Sbjct: 2 SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
L+ TQ + ++F + S + L++ + + + S +Q + +K
Sbjct: 62 PLSRLTQPFTRALEEVLFEGMTVFFSFALLMV---GVAITTKLISSWMQFGLLFAPETLK 118
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F R++ +K+++S L+N + S K L+ +I+ + + + T+++ +++ S
Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLATSDLQSY 178
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ R +L + L + L ++D+ H + +++M++ E+ E K G+P +K
Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238
Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++S+A + + + + +++ NPTH+A+AL Y + P+LV+KG + A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
+ + A ++P+ + LAR+L+ + ++IP +AVA +
Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341
>gi|284006885|emb|CBA72154.1| type III secretion component protein SctU [Arsenophonus nasoniae]
Length = 349
Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 180/346 (52%), Gaps = 3/346 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
KTE P++KKI+DA +G S+E I+ L LL S I S L
Sbjct: 2 SGEKTETPTAKKIKDARKKGQILKSKEIVSSCIIVILLSLLLSLSSFFIEHFLSLFAYLQ 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
S+ + IV + H++++ +++ ++ + S+L Q +L+ + +KP
Sbjct: 62 DSSLLDFQTAKARIVPHIWHITINILLP---IIIITILIIVLSHLAQFGFLLSPSSLKPD 118
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K ++ G K+I+S+ L+ F KS +K+I +G I+ + N I
Sbjct: 119 IKHINPIAGAKKIFSLKILLEFFKSLLKVIFIGFIVWFVIKGNINFFFHLPKCGLKCIPI 178
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ I+ +L + +++LD YH + +LKMSK+EIK E K+ GNP IK R+
Sbjct: 179 FIGQLLTQLTIICILGLIIISILDYCLEYHFYIKQLKMSKEEIKKEYKEMDGNPEIKGRR 238
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + + + + + ++++IITNPTH A+ +RYI+ E P++ K + +A+ +++I
Sbjct: 239 KQLHKELLVNNIRKQVKQSSVIITNPTHIAIGIRYIKHETPLPIVTLKQTDALAQLVKRI 298
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
A + NIPI + LARSL+ + I+ IP + +A++++ +
Sbjct: 299 AIQENIPIIQRIPLARSLYAEGIIDQYIPENTIETMAEVLHWLIQI 344
>gi|310823551|ref|YP_003955909.1| type III secretion protein, flhb/hrpn/yscu/spas family [Stigmatella
aurantiaca DW4/3-1]
gi|309396623|gb|ADO74082.1| Type III secretion protein, FlhB/HrpN/YscU/SpaS family [Stigmatella
aurantiaca DW4/3-1]
Length = 339
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 150/339 (44%), Gaps = 10/339 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTE P++K++ DA +G P SR S ++ L ++ + G+ + ++
Sbjct: 2 SKTEKPTAKRLRDARRKGQLPRSRLLSSSATTLGGVLGFTAWAPEGVERLRQWTAHVMRG 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + L P L ++ + L LN+ HV P+ +
Sbjct: 62 QGTLEGWEAGG---------WLVLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLE 112
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R+S G KR+ S+ V +K+ + ++ ++ + E L + L H
Sbjct: 113 RISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHL 172
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +L+ + + L D + + + L MS++E+K E ++S G+P K ++K+
Sbjct: 173 LDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKA 232
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R + +A+ ++ NPTH A+ALRY E +AP LVAK Q A +R A
Sbjct: 233 LHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQ 292
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
IP+ + LARSL + IP Y+A A ++
Sbjct: 293 RRGIPVVRDVPLARSLI-SYDVGEQIPEELYQAAAAVLR 330
>gi|114762169|ref|ZP_01441637.1| flagellar biosynthetic protein FlhB [Pelagibaca bermudensis
HTCC2601]
gi|114545193|gb|EAU48196.1| flagellar biosynthetic protein FlhB [Roseovarius sp. HTCC2601]
Length = 330
Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats.
Identities = 72/319 (22%), Positives = 145/319 (45%), Gaps = 1/319 (0%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA-SRL 94
++ L L L + + + + + + + L A +
Sbjct: 2 TAAAYLGLLATGLSIGGGAVLRLGEAMLPFVEHPEKLGSLFFNGMATAPAATVLGAVLKP 61
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
V+P L + + + R V + + P R+S E + Y L F+KSFVK
Sbjct: 62 VLPWLAVPGAVVLCALFATRGLVFAPSRLAPKASRLSPMENARNKYGRRGLFEFLKSFVK 121
Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
+ + ++ + L+ Y ++ + + ++L + + + +D W
Sbjct: 122 LTVYSVVLGLFLSSRYDLIIGVLRGAAPDAAELMLNLMLQLLGIAAVVALCIGAVDYLWQ 181
Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
+ + +MS++E++DE K++ G+P+ K ++++ A+ + +MM RA ++I NP+H
Sbjct: 182 RAEHLRRNRMSQKELRDEHKEAEGDPMFKQQRRARAQEIAQTQMMADVPRADVVIVNPSH 241
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
YA+AL + + DAP+ VAKG + IA+++R++A + +P+ +P AR+L I I
Sbjct: 242 YAVALSWSRKPGDAPICVAKGVDEIARRIREVAEDAGVPLHSDPPTARALHATTRIGEQI 301
Query: 335 PPVFYKAVAQLIYKIYHKK 353
P Y+ VA I +
Sbjct: 302 APEHYRPVAAAIRFAEDMR 320
>gi|167850345|ref|ZP_02475853.1| type III secretion system protein [Burkholderia pseudomallei B7210]
Length = 420
Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRYAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|167840287|ref|ZP_02466971.1| type III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 360
Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats.
Identities = 78/332 (23%), Positives = 160/332 (48%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ A +G S++ + ++ A + L S +T + L +
Sbjct: 14 LKTAREKGQVAKSKDVADAVTLAAAIGVLTAGESMLTGGLTRAIRTALDFVHGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ G+ S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGVASQAPQAGFMITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK I++ +I +T + ++ + + + + K++ +
Sbjct: 132 IFSLKSLLELVKMIVKAIVLACVIWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLVGV 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ L +A D + + +M+K+E K E K+S G+P K ++ +AR
Sbjct: 192 VALVVAVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDAGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
PS+AR+L++ V ++AIP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDAAIPEELFETVAAILRWV 342
>gi|167820512|ref|ZP_02452192.1| type III secretion system protein [Burkholderia pseudomallei 91]
Length = 427
Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 81 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 138
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 139 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 198
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 199 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 258
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 259 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 318
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 319 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 378
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 379 PSVARALYR-VERDASIPEELFETVAAILRWV 409
>gi|220913714|ref|YP_002489023.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
gi|219860592|gb|ACL40934.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
Length = 359
Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats.
Identities = 73/349 (20%), Positives = 159/349 (45%), Gaps = 6/349 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
+TE + K++ D ++G S++ + + + A + L + +
Sbjct: 2 SDSQERTEQATDKRMRDVRSKGQLSRSQDLTAWLGVGAGAVMLPATIDRASNAAVDQVFS 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ A D + V L S + ++ P ++ + + +Q +
Sbjct: 62 VRAIMESP---DPAKAVHALELGLGSMAGVLAPMFVVVFLVVLAGSAVQGGVHF--KKFR 116
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
F+ +L G+KR++ + + +K+ +K ++VG ++ + +L +
Sbjct: 117 AEFEHFNLLSGMKRLFGMQAVWGGLKALLKAVVVGIVLYSVVQGLIPVLLTAGGLPVSGV 176
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ A + ++ + L +D+ + K +MSK+E+ DE K + G+P++++
Sbjct: 177 IAAAADGIGALVQCAVAAGLVLAAVDVLVVMRRNRKKTRMSKKEVTDENKNTEGDPLVRS 236
Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
++S + R++M+ A + A +++ NPTH A+AL+Y + AP +VAKG +IA ++R
Sbjct: 237 HRRSRQLAMSRNRMIAAIADADVVLVNPTHVAVALKYDAGK-SAPRVVAKGAGVIAARIR 295
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +P+ ++ LAR+L + IP Y+AVA ++ + K
Sbjct: 296 AEAEAKEVPMVQDIPLARALHSACELGQEIPVELYRAVAGVLAFVMSLK 344
>gi|76819722|ref|YP_335839.1| type III secretion system protein HrcU [Burkholderia pseudomallei
1710b]
gi|76584195|gb|ABA53669.1| type III secretion inner membrane protein [Burkholderia
pseudomallei 1710b]
Length = 399
Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 159/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 53 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 111 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWVESL 384
>gi|226198428|ref|ZP_03793996.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
gi|225929485|gb|EEH25504.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
Length = 420
Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|167898942|ref|ZP_02486343.1| type III secretion system protein [Burkholderia pseudomallei 7894]
gi|167907272|ref|ZP_02494477.1| type III secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 399
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 53 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 111 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWVESL 384
>gi|167724367|ref|ZP_02407603.1| type III secretion system protein [Burkholderia pseudomallei DM98]
Length = 360
Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 192 VSVVVAVLAAADYKIARVMFIRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWVESL 345
>gi|126445400|ref|YP_001063276.1| type III secretion system protein HrcU [Burkholderia pseudomallei
668]
gi|237510110|ref|ZP_04522825.1| type III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254186950|ref|ZP_04893466.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|254301368|ref|ZP_04968812.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|126224891|gb|ABN88396.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 668]
gi|157810968|gb|EDO88138.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|157934634|gb|EDO90304.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|235002315|gb|EEP51739.1| type III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 420
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|123443724|ref|YP_001007695.1| surface presentation of antigens protein SpaS [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122090685|emb|CAL13561.1| putative type III secretion apparatus protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 374
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D+ +G + S++ +++ + F S +Y + S L +L S
Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVSGAFAISGFSS--LYGLGSLLQRILLS 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ +E LL L + V+P LL + G L+Q L VK F
Sbjct: 61 PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ G K+I+++ +L +K+F+ +++ T + + + ++
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+++ L + ++D + + LKM KQE+K E K + G+P IK+ ++
Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + + +T ++ NPTH A+ + Y P L+ K + L AK + A
Sbjct: 235 LHQEILSEDVKSNVRSSTFVMANPTHIAMVIYYNGDIAPVPYLMMKTRGLQAKAVIAYAE 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+P+ + +AR L++ +S I V +I + ++
Sbjct: 295 SQGVPVVRDIPVARQLWRNYCKDSFINDQGLDDVMHIINWLVRVEL 340
>gi|254263389|ref|ZP_04954254.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
gi|254214391|gb|EET03776.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
Length = 420
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 159/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|167915634|ref|ZP_02502725.1| type III secretion system protein [Burkholderia pseudomallei 112]
Length = 396
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 50 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 107
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 108 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 167
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 168 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 227
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 228 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 287
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 288 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 347
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 348 PSVARALYR-VERDASIPEELFETVAAILRWVESL 381
>gi|126458610|ref|YP_001076232.1| type III secretion system protein HrcU [Burkholderia pseudomallei
1106a]
gi|242311362|ref|ZP_04810379.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
gi|126232378|gb|ABN95791.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106a]
gi|242134601|gb|EES21004.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
Length = 420
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 159/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|167743331|ref|ZP_02416105.1| type III secretion system protein [Burkholderia pseudomallei 14]
gi|254194002|ref|ZP_04900434.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
gi|169650753|gb|EDS83446.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
Length = 420
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|254185079|ref|ZP_04891668.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
gi|184215671|gb|EDU12652.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
Length = 420
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRSER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|167828885|ref|ZP_02460356.1| type III secretion system protein [Burkholderia pseudomallei 9]
Length = 360
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWVESL 345
>gi|167923476|ref|ZP_02510567.1| type III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 360
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342
>gi|91791412|ref|YP_561063.1| type III secretion exporter [Shewanella denitrificans OS217]
gi|91713414|gb|ABE53340.1| type III secretion exporter [Shewanella denitrificans OS217]
Length = 352
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 80/349 (22%), Positives = 169/349 (48%), Gaps = 8/349 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ ++K+E S K+ +A G S E + + +L L Y F + S +
Sbjct: 2 SDEHKSEQASQYKLNEARKRGQLAKSMELNAWVLVLISLAYFYLFSESLAKELMSVISRY 61
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L + ++ + + + + L++P + ++ I ++ V + + P
Sbjct: 62 LQILGSVDIR--NNFMLIAFDIFYPLAVLLVPFFSILVVASIVINVLLNGFVFSFEPLSP 119
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
F++++ +G+K+I+S NL F+K +K+ LV + ++ ++ S+L
Sbjct: 120 KFEKLNPVKGLKKIFSKKNLFEFIKQTIKLFLVALCGYLLFYGVVERLIIASQSHVSSLL 179
Query: 186 YHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
A ++ +LL I L LD+ ++ + ++ MS +E+++E K+ G+P IK+
Sbjct: 180 GMALSQETLRLSFYLLLTIFPLIALDVLFTRWDFKKQMMMSHREVREEYKKKEGDPQIKS 239
Query: 245 RQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++K + + + + + A +II NPTH ++AL++ ++P++VA G ++ K +
Sbjct: 240 KRKEVQKELAKKLIALGKVKEADVIINNPTHISVALKFDPLTMNSPIVVASGSGVLGKFI 299
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
R+IA +H++ SLAR L+KQ+ I +P ++ + IY K
Sbjct: 300 RRIAVKHSLLQVTNISLARRLYKQLAIGQPLPAEYFDE----LAPIYRK 344
>gi|255026794|ref|ZP_05298780.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J2-003]
Length = 324
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 86/322 (26%), Positives = 167/322 (51%), Gaps = 5/322 (1%)
Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
S+E + S+L L FF I + LL + + + +L+
Sbjct: 1 AKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLM---- 56
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V
Sbjct: 57 -EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEV 115
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+K+ + I L+ + I ++ T++ + N L F + + + L IA + +
Sbjct: 116 VKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGL 175
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT +
Sbjct: 176 LDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFV 235
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ NPTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++
Sbjct: 236 VNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTT 295
Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
+ I YK V +++ ++
Sbjct: 296 NPDEYIQEDLYKDVIEVMKELM 317
>gi|213420820|ref|ZP_03353886.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 221
Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 66/199 (33%), Positives = 117/199 (58%)
Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
LVG + L ++ M+ ++ +P + +A V ++++L + + D+ +
Sbjct: 1 STLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQ 60
Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
KL+MS+Q+I+DE K+S G+P +K + + + R+ + +MME +A +I+TNPTH
Sbjct: 61 IFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTH 120
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
Y++AL+Y + + AP +VAKG LIA ++R+I EH +P E P LAR+L++ I I
Sbjct: 121 YSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQI 180
Query: 335 PPVFYKAVAQLIYKIYHKK 353
P Y AVA+++ ++ K
Sbjct: 181 PGQLYAAVAEVLAWVWQLK 199
>gi|212711698|ref|ZP_03319826.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
30120]
gi|212685800|gb|EEB45328.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
30120]
Length = 361
Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI+D+ +G + S+++ ++ + +Y++ + +L +
Sbjct: 3 EKTEKPTDKKIKDSAKKGQSYKSKDSIAAIVLVTGAFVV--DGMSSLYNLGGLMKKILLN 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
++D LL S +V+P L+ + G L+Q L VK F
Sbjct: 61 PNDIYIDD------LLWQFSKIFMSIVLPILIACFLSGAIISLLQSRFRLATEAVKLDFT 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ G K+I+S+N+L F+K+ + +++ T + + +
Sbjct: 115 KLNPIAGFKKIFSLNSLKEFIKAILYLLVFSVSATTFFIVWRHEIFMLYRTTINGMTTQW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++D + + LKM KQE+K E K + G+P +K+ +K
Sbjct: 175 VTLCIIFVFVFLAVAVIIVLVDAIAEFFLFIKNLKMEKQEVKKEHKDNEGDPHLKSARKG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + ++ + +T ++ NPTH A+ + Y + P L+ K + L AK + K A
Sbjct: 235 LHQEILSEEVKSSIQNSTFVMANPTHIAMLIYYDANISPLPFLMFKTRGLQAKAVIKYAE 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
E NIP+ + LAR +++ +S I + V Q++ + ++
Sbjct: 295 EQNIPVVRDIILARQIWRNYKKDSFIDEQGLQDVMQIVTWLIRIEL 340
>gi|238563893|ref|ZP_00438080.2| type III secretion inner membrane protein [Burkholderia mallei GB8
horse 4]
gi|254176635|ref|ZP_04883293.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
10399]
gi|254201086|ref|ZP_04907451.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
FMH]
gi|254205051|ref|ZP_04911404.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
JHU]
gi|147748698|gb|EDK55773.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
FMH]
gi|147754637|gb|EDK61701.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
JHU]
gi|160697677|gb|EDP87647.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
10399]
gi|238519734|gb|EEP83202.1| type III secretion inner membrane protein [Burkholderia mallei GB8
horse 4]
Length = 420
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|254575135|gb|ACT68036.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 365
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 20/355 (5%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSV 58
M+E KTE P+SKK +D+ +G S++ +L + +L F P I
Sbjct: 1 MAE------KTEQPTSKKRKDSAKKGQTFKSKDVITTVILLVGIYFLAHAVSFGPFISFY 54
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
T L L D++ I F L +P + + + G + L+Q L
Sbjct: 55 THLLQYTTRPGMGVFLLDLARIFFTL----------ALPFIAVCTLVGFAATLLQTGFTL 104
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+K +FK ++ EG+K+I+S+ + +KS +++ + ++ L
Sbjct: 105 ATEAIKLNFKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYR 164
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
A+ ++ K +++ + + + + D+ Y + +KM K E+K E K+S G
Sbjct: 165 ADMPGLVAVWVALALKAVMVFIAWSIFVLLADLLVEYFLHFKDMKMDKHEVKQEHKESDG 224
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
NP IK+ ++ + + + M A + +++ NPTH A+A+ + P + + NL
Sbjct: 225 NPQIKSARRRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNL 284
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK--AVAQLIYKIYH 351
AK A + +P+ L R L+ S I Y V ++ +
Sbjct: 285 KAKAAIAYAEKIGVPVVRNIPLTRRLYHTYSQYSFISLEDYVLMDVMDVLIWLRQ 339
>gi|217422649|ref|ZP_03454152.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
gi|217394880|gb|EEC34899.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
Length = 420
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402
>gi|53716421|ref|YP_106206.1| type III secretion system protein HrcU [Burkholderia mallei ATCC
23344]
gi|52422391|gb|AAU45961.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
23344]
Length = 360
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWVESL 345
>gi|53722644|ref|YP_111629.1| type III secretion system protein HrcU [Burkholderia pseudomallei
K96243]
gi|52213058|emb|CAH39096.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
Length = 360
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342
>gi|82470755|gb|ABB77407.1| HrcU [Pantoea stewartii subsp. stewartii]
Length = 360
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 10/342 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P++KK++DA +G P S++ + ++ G+ + + + + L
Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMR 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q + +S L L S + + + I IQ P+ +KP F
Sbjct: 63 LNQPFEQVLSE---LAGSALLIVSTFFGITVAVAALLRIIGGWIQYGPLFATEALKPDFN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ ++++S+ L + + S +K + TI + L+ + ++ + +S
Sbjct: 120 RLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLNSFWPAV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ +V LL + +T+LD G + + + +MS Q+I+DE KQS G+P +K + +
Sbjct: 180 EVLLTRVSRQTLLTLLIMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239
Query: 249 IARSRIRHKMMEATSR-----ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+A+ + + ++A R A +++ NPTHYA+AL Y P ++ KG++ AK +
Sbjct: 240 VAQELL-NAPVQAVKREPLEKADLLLVNPTHYAVALYYRPELTPLPRIICKGEDSDAKTL 298
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
A + IP+ LAR+L+ Q IP +AVA++
Sbjct: 299 IVRAQQAKIPVIRFIWLARTLY-QSQEGQLIPRHTLQAVARV 339
>gi|134281989|ref|ZP_01768695.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
gi|134246518|gb|EBA46606.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
Length = 420
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 74/335 (22%), Positives = 159/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLATAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|260775664|ref|ZP_05884560.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608080|gb|EEX34249.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
BAA-450]
Length = 352
Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats.
Identities = 73/346 (21%), Positives = 143/346 (41%), Gaps = 13/346 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ KKI+D+ G + + + + L+ + + +
Sbjct: 1 MAE------KTEKPTQKKIQDSRKRGQVAQTPDIPKLLACVLTFEVLVACSEWLMAELKT 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+++ + Q ++ + H+ +VIP + G Q +
Sbjct: 55 LVYMPITLFNQPFEHGFLSVLEVAKHVLFLFILIVIPVSFFAALIGRWG---QFGFLFAP 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K F +++ +K+++S L + + K IL+ + I L + + +
Sbjct: 112 EALKLDFNKLNPFSQLKQLFSGQKLTEVLNNIFKSILIFVVFYILLNDLAHAVFKLPNLP 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A V + LL + +LD +LKM KQE+K E K S G+P
Sbjct: 172 LDRMWLAAIDLFIYVARVCLLLLLAPAILDFALKKFFHLKQLKMDKQEVKQEFKDSEGDP 231
Query: 241 IIKNRQKSIARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
+K++++ + + + +++ NPTH+A+ L Y PV+ AKG++
Sbjct: 232 FVKSQRRQLGMELVEGSPQTTNASMDEMDMLVVNPTHFAVGLHYNPGVTPLPVVGAKGKD 291
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
A ++ + A +P+ LAR+L++Q + S I AVA
Sbjct: 292 REALELIQQADHSGVPVIRYVWLARTLYQQ-ELGSYINRDTLDAVA 336
>gi|238752378|ref|ZP_04613856.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
43380]
gi|238709419|gb|EEQ01659.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
43380]
Length = 320
Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats.
Identities = 66/313 (21%), Positives = 132/313 (42%), Gaps = 3/313 (0%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L + Y L + I + + + Q + ++HI +V
Sbjct: 1 MLVLVAYFLVTGNTLIEQIGALFRSAIEQLPQPLIMALAHIG---GECVAVLFHIVGILG 57
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
++ I S + Q P+L V+ + ++ K+++S+ +L KS +K+ ++
Sbjct: 58 GALILVTILSCVAQVGPLLATKAVEFKGEHINPINNAKQLFSMRSLFELTKSLLKVGVLT 117
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
I L + + + +L +L ++LD + +
Sbjct: 118 LIFGYLLMHYATSFGYLTYCGSSCAIPVFATLMSWLLGALLACYVVFSLLDYSFQRYNTM 177
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
+LKMS+++IK E K S G+P IK +++ + + R+T ++ NPTH+A+ L
Sbjct: 178 KQLKMSREDIKREHKDSDGDPEIKQKRRQLQHEVQSGSFAKNVQRSTAVVRNPTHFAVCL 237
Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
Y + PV++ KG A + K+A + +P+ E +LAR+L + V IP +
Sbjct: 238 FYHADDAPLPVVIEKGAGERAALIIKLAEQQGVPVIENITLARALHRDVACGDTIPEPLF 297
Query: 340 KAVAQLIYKIYHK 352
+ VA ++
Sbjct: 298 EPVAAILRMAMSL 310
>gi|188534807|ref|YP_001908604.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
Et1/99]
gi|188029849|emb|CAO97730.1| export protein for peptides using the type III secretion system
[Erwinia tasmaniensis Et1/99]
Length = 371
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 72/351 (20%), Positives = 146/351 (41%), Gaps = 16/351 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K+ D+ +G S++ +++LA + YL + + S
Sbjct: 1 MAE------KTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAI--NFHPFIS 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++L + L D L L L +P + + + G L+Q +
Sbjct: 53 FYSLVLREGDKISLNDF------LVELMRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ +G K+I+S+ + +KS + +I+ + + + + +
Sbjct: 107 EAIKLNFKALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAISIYNGS 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K +++ + + + ++D Y +KM K E+K E K+S GNP
Sbjct: 167 IDVLISVWTALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK ++ + + M A + +++ NPTH A+A+ + P + + N+ A
Sbjct: 227 EIKGARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKI 349
+ A + IP+ LAR L+ S I V ++ +
Sbjct: 287 RAAIAYAEKIGIPVVRYIPLARRLYHNYSQYSFISINDDALMEVMDILIWL 337
>gi|317121832|ref|YP_004101835.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
gi|315591812|gb|ADU51108.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
Length = 477
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 75/279 (26%), Positives = 144/279 (51%)
Query: 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE 134
++ L L+ P L+ G+ +Q + + V P ++R++
Sbjct: 139 WTVADAAGLGRVALLATLAAAAPLALVGWAVSAGAGFVQTGGLFQIGLVAPRWERINPLA 198
Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
G++R+ S LV +K+ VK+ ++ ++ +L + +L ++L A V
Sbjct: 199 GLQRLVSRRALVELLKAPVKLAVLVAVLGPALVQAAGQLLAATGTPAEALLPAAARAVHG 258
Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
++ L + + D + + + L+M+ QE K + K++ G+P+++ R + R
Sbjct: 259 LMWRGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRLRQRQRQLA 318
Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
R +M++ R +++TNPTH A+ALRY APV+VAKG ++A ++R +A H +P+
Sbjct: 319 RRRMLQEVPRVDVVVTNPTHVAVALRYDPARMGAPVVVAKGLGVLALRIRAVAEAHGVPV 378
Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
EEP+LAR+L+K V + IPP Y AVA+++ ++ +
Sbjct: 379 MEEPALARALYKAVEVGQEIPPALYVAVAEVLAFVWRLR 417
>gi|124382486|ref|YP_001025750.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
10229]
gi|126446560|ref|YP_001077835.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
10247]
gi|254359173|ref|ZP_04975445.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
2002721280]
gi|126239414|gb|ABO02526.1| type III secretion inner membrane protein [Burkholderia mallei NCTC
10247]
gi|148028360|gb|EDK86320.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
2002721280]
gi|261826829|gb|ABM98869.2| type III secretion inner membrane protein [Burkholderia mallei NCTC
10229]
Length = 420
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 160/335 (47%), Gaps = 4/335 (1%)
Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
++ +G S++ + ++ A + L S ++ + L +
Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
+ L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHK 257
+ + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
+ +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI
Sbjct: 312 PRQRGGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
PS+AR+L++ V +++IP ++ VA ++ +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWVESL 405
>gi|208434682|ref|YP_002266348.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|208432611|gb|ACI27482.1| flagellar biosynthetic protein [Helicobacter pylori G27]
Length = 335
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 88/325 (27%), Positives = 160/325 (49%), Gaps = 3/325 (0%)
Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
P S E +LA LI + FF + + +L + + L L+
Sbjct: 2 PKSMEVVGVLGLLAGLISIFVFFIWWVDGFSEMYRHVLKDFSLD--FSKESVQELFNQLA 59
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
L++P L++ M+ S ++Q + ++P F +++ G+K ++S+ L++
Sbjct: 60 KDTFLLLLPILIILMVVAFLSNVLQFGWLFAPKVIEPKFSKINPINGVKNLFSLKKLLDG 119
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+K+ L + + + N L ++ +L L
Sbjct: 120 SLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKNKALLLISSLLFLFFVLAF 179
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
+D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A ++
Sbjct: 180 VDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVV 239
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L++ V
Sbjct: 240 VTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDV 298
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
+N+AIP ++AVA + ++ +
Sbjct: 299 KLNAAIPEELFEAVAIVFAQVAKLE 323
>gi|238787480|ref|ZP_04631278.1| Type III secretion protein, YscU/HrpY family [Yersinia
frederiksenii ATCC 33641]
gi|238724267|gb|EEQ15909.1| Type III secretion protein, YscU/HrpY family [Yersinia
frederiksenii ATCC 33641]
Length = 321
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 62/310 (20%), Positives = 136/310 (43%), Gaps = 1/310 (0%)
Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLF 102
++ L+ +F Y++ L+ S+ + + I + + + ++
Sbjct: 1 MLVLVAYFLLTGYTLIDQASALIRSSIHQLQQPIGMALMRIGTQCMEVFIHIMGILGGAL 60
Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
++ + S + Q P+L V+ + ++ K+++S+++L KS +K+ ++ I
Sbjct: 61 VLMTLLSGIAQVGPLLATKAVEFKGEHINPINNAKQLFSLHSLFELSKSLLKVGVLTLIF 120
Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
L + + + +L ++ +++D + + +L
Sbjct: 121 GYLLIRYAPSFGYLAYCGSSCAIPVFTTLMSWILGALIACYVVFSLMDYSFQRYNTMKQL 180
Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
KMS E+K E K S G+P IK +++ + + + R+T ++ NPTH+A+ L Y
Sbjct: 181 KMSHDEVKREHKDSDGDPHIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYH 240
Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ P+++ KG A + KIA + IP+ E +LAR+L + V + IP ++ V
Sbjct: 241 ADDAPLPIVIEKGTGERAALIVKIAEQQGIPVVENITLARALHRDVDCGNTIPESLFEPV 300
Query: 343 AQLIYKIYHK 352
A ++
Sbjct: 301 AAILRMAMAL 310
>gi|149179491|ref|ZP_01858040.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
gi|148841678|gb|EDL56092.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
Length = 323
Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 1/314 (0%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
+LA L FF + + + V L + +++ ++ + +
Sbjct: 2 MMLATAAVLYFFAVRLSSDMKNLMEVSLTTPVWLRVDQP-LLIERCESIIELFLEGTLVM 60
Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
+++ + + ++Q ++ + ++ ++R++ EG KRI SI LV S KI L+
Sbjct: 61 MVVLFVSAVFLNIVQVGFMMTPDVLQLKWERLNPIEGAKRIISIRGLVKLGVSLGKISLL 120
Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
I + L + A P +IL F + ++ +++ L + L LD + +
Sbjct: 121 VLIAVWFSYLVFPGFLGLMGAPPETILRDIFNSTIELGLLLALALIILGGLDYAFQKWKH 180
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
L MSKQEI++E+K G+P+I+ R++ R + + A ++ITNPTH ++A
Sbjct: 181 EKDLMMSKQEIREEMKSMDGDPLIRQRRREAHRKLAMSQELSKVESADVVITNPTHISIA 240
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
++Y APV+VAKG IA ++RKIA EH IPI E +LAR +++ V IP
Sbjct: 241 IKYDPESMPAPVVVAKGAGEIAFQIRKIANEHGIPIIERKALARQMYRDVKTGQEIPFEL 300
Query: 339 YKAVAQLIYKIYHK 352
Y+ +++ +Y
Sbjct: 301 YEVFVEIMAYVYSL 314
>gi|218193976|gb|EEC76403.1| hypothetical protein OsI_14046 [Oryza sativa Indica Group]
Length = 324
Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 136/245 (55%)
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ D + I+ + L A ++P + ++ + S ++ V + ++P F
Sbjct: 8 FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALVSPVMLGGLVFSGKSLQPKFS 67
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ GI +++S +K+ +K +L+G+ L ++ M+ IS +P + + +A
Sbjct: 68 KLNPLPGIAKMFSAQTGAELLKAILKSVLMGSSAGFFLWYHWPEMMRLISESPLTAMSNA 127
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P +K R +
Sbjct: 128 LNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDPHVKGRIRQ 187
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ R+ R +MME +A +I+TNPTHY++ALRY + + AP +VAKG LIA ++R+I
Sbjct: 188 MQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIALRIREIGT 247
Query: 309 EHNIP 313
E+ +P
Sbjct: 248 ENRVP 252
>gi|238785152|ref|ZP_04629146.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
ATCC 43970]
gi|238713967|gb|EEQ05985.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
ATCC 43970]
Length = 332
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 64/313 (20%), Positives = 131/313 (41%), Gaps = 3/313 (0%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
S E + ++ + Y L + + + Q ++HI +
Sbjct: 3 KSVEITSGLQLVVLVTYFLLTGYTLVEQAKVLIRDTIEQLHQPLTMALAHIG---SECLA 59
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
++ ++ I S Q P++ V+ + ++ K+++S+ +L
Sbjct: 60 VLLHIMGILGGALVLITIISGFAQVGPLMATKAVEFKGEHINPINNAKQLFSLRSLFELT 119
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
KS +K+ ++ I L ++ + + +L ++ +++
Sbjct: 120 KSLLKVGVLTLIFGYLLMHYAASLGYLAYCGSQCAIPVFATLMGWLLGALIACYMVFSLM 179
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
D + + +LKMS +E+K E K+S G+P IK +++ + + + RAT ++
Sbjct: 180 DYAFQRYNTMKQLKMSLEEVKREYKESDGDPHIKQKRRQLQQEVQSGSFAKNVQRATAVV 239
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
NPTH+A+ L Y + PV++ KG A + K+A + IP+ E +LAR+L V
Sbjct: 240 RNPTHFAVCLLYHPEDAPLPVVIEKGHGERAALIIKLAEQQGIPVVENIALARALHHGVA 299
Query: 330 INSAIPPVFYKAV 342
IP F++ V
Sbjct: 300 CGETIPEQFFEPV 312
>gi|300982207|ref|ZP_07175919.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
200-1]
gi|300307277|gb|EFJ61797.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
200-1]
Length = 247
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 127/215 (59%)
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A V ++
Sbjct: 1 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 60
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + R+ R +M
Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 120
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+N+P E P
Sbjct: 121 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 180
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L++ I IP Y AVA+++ ++ K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215
>gi|183600583|ref|ZP_02962076.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
gi|188019860|gb|EDU57900.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
Length = 367
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 72/346 (20%), Positives = 157/346 (45%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI+D+ +G + S+++ ++ + + + ++ + + +L S
Sbjct: 3 EKTEKPTEKKIKDSAKKGQSFKSKDSVAALVLVVSVYVI--TGTTSLFEIAGLMKRILLS 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ LL + ++ IP LL + G L+Q L +K F
Sbjct: 61 PYNININ------ILLREFIGAFLKIAIPVLLACFISGAILSLLQSRFRLATEAIKIDFS 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ GIK+I+S+N+L +K+F+ +I+ + + + + ++Y
Sbjct: 115 KLNPISGIKKIFSLNSLKELIKAFLYLIVFSISAMVFFILWRHDIFLLYRSTINGVIYQW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+++ L + ++D+ + + LKM KQE+K E K + G+P +K+ +K
Sbjct: 175 VGLCATFVVVFLAVALFIILVDVVTEFFLFIKGLKMEKQEVKKEYKDNEGDPHLKSARKG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + ++ +T ++ NPTH A+ + Y P L+ K L AK + + A
Sbjct: 235 LHQEILSEEVKSNVRNSTFVMANPTHIAMLIYYNNDIAPLPFLLFKSHGLQAKMIVRYAE 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+ +P+ + LAR +++ +S I + V ++I + ++
Sbjct: 295 QQGVPVVRDIPLARKIWRYYRKDSFIDEHGLQDVMRIINWLIRIEL 340
>gi|292487274|ref|YP_003530146.1| surface presentation of antigens protein SpaS [Erwinia amylovora
CFBP1430]
gi|292900354|ref|YP_003539723.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200202|emb|CBJ47330.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552693|emb|CBA19738.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
CFBP1430]
Length = 371
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 73/353 (20%), Positives = 146/353 (41%), Gaps = 16/353 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K+ D+ +G S++ ++L YL + S TS
Sbjct: 1 MAE------KTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTS 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++L + L D LT L L +P + + + G L+Q +
Sbjct: 53 FYSLVLREGDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +F+ + +G+K+I+S+ + +KS +++ + + + + +
Sbjct: 107 EAIKLNFEALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGS 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K +++ + + A + ++D Y + +KM K E+K E K+S GNP
Sbjct: 167 IEELISVWITLTIKAVMVFIGWSAFVLIIDFFVEYFLHFKDMKMDKHEVKQEHKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK ++ + + M A + +++ NPTH A+A+ + P + + N+ A
Sbjct: 227 EIKGARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYH 351
K A + IP+ L R L+ +S I V ++ +
Sbjct: 287 KAAIAYAEKIGIPVVRYIPLTRRLYHTYSQHSFISLHDDSLMEVMDILIWLRQ 339
>gi|262166221|ref|ZP_06033958.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
gi|262025937|gb|EEY44605.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
Length = 240
Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 68/215 (31%), Positives = 122/215 (56%)
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++ + + V +KS +K++LV + + + + ++HA + +++
Sbjct: 1 MFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLL 60
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
I + + +DI + Q ++LKM+KQE+KDE K + G P +K R + + R + +M
Sbjct: 61 ISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRM 120
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P
Sbjct: 121 MAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAP 180
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR+L+ + IP + AVAQ++ ++ K
Sbjct: 181 PLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 215
>gi|221209600|ref|ZP_03582581.1| bcscU [Burkholderia multivorans CGD1]
gi|38639345|gb|AAR25811.1| BcscU [Burkholderia multivorans E243]
gi|221170288|gb|EEE02754.1| bcscU [Burkholderia multivorans CGD1]
Length = 343
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ +A +G+ P S E + + + L + + ++ +
Sbjct: 3 EKNQPPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 VG--AADPSARIAALIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI H++ K+KMS E++ E K+ G+P I+ +++
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALHY-GGIGTLPWVLARGEGDAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA++L+ P N I P ++ VAQL+
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338
>gi|161520299|ref|YP_001583726.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
gi|189353522|ref|YP_001949149.1| flagellar biosynthesis pathway component [Burkholderia multivorans
ATCC 17616]
gi|160344349|gb|ABX17434.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
gi|189337544|dbj|BAG46613.1| flagellar biosynthesis pathway component [Burkholderia multivorans
ATCC 17616]
Length = 343
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ +A +G+ P S E + + + L + + ++ +
Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A + + I L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K L+ + + E+ + P S L
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTRPMSTLALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI H++ K+KMS E++ E K+ G+P I +++
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYY-GGIGTLPWVLARGEGDAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA++L+ P N I P ++ VAQL+
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338
>gi|85060059|ref|YP_455761.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
str. 'morsitans']
gi|45504778|gb|AAS66868.1| SpaS [Sodalis glossinidius]
gi|84780579|dbj|BAE75356.1| type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 352
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 153/340 (45%), Gaps = 8/340 (2%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ K++ DA +G A SR+ + +L + +L F S + S+ ++
Sbjct: 4 KTEKPTPKRLRDAAKKGQAFKSRDVIIACMMLCGVCWLTSFTS--LESLMDLYRQMVVGN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
L + + +A ++++P + + ++ L+Q +L K +F+
Sbjct: 62 FSLSLTAYRNAL------MFTALQILLPIIAMGIVASALPLLLQTGFMLATRAFKLNFQA 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ GIK+I+S+ + +K+ + + + I + + + + ANP I+
Sbjct: 116 LNPTRGIKKIFSLRTAKDCVKALLYLAAFAIALMIVWRTHRQLLFEQLFANPQDIVAIWR 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ LL I + +LDI Y LKM KQE++ E+K+ G+P IK+R++
Sbjct: 176 QLLMSLVLTCLLCIVCIVILDIVAEYFLHLRSLKMDKQEVRREMKEQEGDPEIKHRRREA 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + + +II NPTH A+ + + P + +N A +R A +
Sbjct: 236 HMEILSEQTQADIKGSQLIIANPTHLAVGIYHNPDLTPLPFISVLERNQRALAVRDYAKK 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+ + E+ LAR ++ + S + V +L+ +
Sbjct: 296 VGVSVIEDVQLARRIYYTHHLYSFVKINELDQVLRLLSWL 335
>gi|312171382|emb|CBX79641.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
ATCC BAA-2158]
Length = 371
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 73/353 (20%), Positives = 146/353 (41%), Gaps = 16/353 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K+ D+ +G S++ ++L YL + S TS
Sbjct: 1 MAE------KTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTS 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++L + L D LT L L +P + + + G L+Q +
Sbjct: 53 FYSLVLREGDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +F+ + +G+K+I+S+ + +KS +++ + + + + +
Sbjct: 107 EAIKLNFEALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGS 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K +++ + + A + ++D Y + +KM K E+K E K+S GNP
Sbjct: 167 IEELISVWITLTIKAVMVFIGWSAFVLIMDFFVEYFLHFKDMKMDKHEVKQEHKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK ++ + + M A + +++ NPTH A+A+ + P + + N+ A
Sbjct: 227 EIKGARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYH 351
K A + IP+ L R L+ +S I V ++ +
Sbjct: 287 KAAIAYAEKIGIPVVRYIPLTRRLYHTYSQHSFISLHDDSLMEVMDILIWLRQ 339
>gi|221200564|ref|ZP_03573606.1| bcscU [Burkholderia multivorans CGD2M]
gi|221209221|ref|ZP_03582212.1| bcscU [Burkholderia multivorans CGD2]
gi|221170911|gb|EEE03367.1| bcscU [Burkholderia multivorans CGD2]
gi|221179905|gb|EEE12310.1| bcscU [Burkholderia multivorans CGD2M]
Length = 343
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ +A +G+ P S E + + + L + + ++ +
Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A + + I L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI H++ K+KMS E++ E K+ G+P I +++
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYY-GGIGTLPWVLARGEGDAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
P LA++L+ P N I P ++ VAQL+
Sbjct: 299 NALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338
>gi|254254348|ref|ZP_04947665.1| Type III secretory pathway component EscU [Burkholderia dolosa
AUO158]
gi|124898993|gb|EAY70836.1| Type III secretory pathway component EscU [Burkholderia dolosa
AUO158]
Length = 343
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ DA +G+ P S E + + + L + + + +
Sbjct: 3 EKNQQPTAKRLRDAREKGDVPKSAETISSAFFVGVCVALAVGIGTLFARLQALFRLAFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 IG--AADPSARIAVLIDGAARDWAMLSAQIVAAGLLAGVLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI H++ K+KMS +E++ E K+ G+P ++ +++
Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRHEFNRKMKMSIEEVRREYKEDEGDPHVQAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYY-GGIGTLPWVLARGEGDAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA++L+ P N I P ++ VAQL+
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338
>gi|213618546|ref|ZP_03372372.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 261
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 63/263 (23%), Positives = 130/263 (49%), Gaps = 2/263 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKNRQKSIARSRIRHKMMEATS 263
+K + + + R+ + +MME +
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVT 261
>gi|170737797|ref|YP_001779057.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
gi|169819985|gb|ACA94567.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
Length = 343
Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 158/348 (45%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ +A +G+ P S E + + + L V +
Sbjct: 1 MAEKDQ------KPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + + + L+ + + L + + G+ + +Q V+
Sbjct: 55 LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLQAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYY-GGMGSLPWVLARGEGDAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA++L++ P N I P ++AVAQL+
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338
>gi|83646791|ref|YP_435226.1| flagellar biosynthesis pathway protein FlhB [Hahella chejuensis
KCTC 2396]
gi|83634834|gb|ABC30801.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
KCTC 2396]
Length = 342
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 85/326 (26%), Positives = 162/326 (49%), Gaps = 2/326 (0%)
Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
S+E S ++ A + L S L A A DI +
Sbjct: 2 AKSQEVSHVFALAAGALLLWSVSQDLATRFFSLCQKLFADAASVD-FDIITAKAWGIWIV 60
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
S ++ P L++ M+ G+ ++Q PV + + +KP KR++ G KR++SI L
Sbjct: 61 SEVSWILSPLLVVMMVIGVLCSIVQTGPVFSFHPIKPDIKRINPITGFKRLFSIKILFEL 120
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+K+ +K+ L+G+++ +L + + + + L ++ + + + +
Sbjct: 121 VKNLIKLALLGSVLYWALAGLMPDLFGLTAKSAATALPVFIGYAAGIIFKLTAALLLIAL 180
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK-MMEATSRATI 267
+D+ ++ ++ ++M+K+E+KDEIK+ G+P I+ ++K + R + + A +
Sbjct: 181 IDMLFTRWEFMRNMRMTKKEVKDEIKRREGDPHIRAKRKELERELRKRSGSAASVPEADL 240
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
IITNP HYA+ ++Y + AP + KG + +AK +R +A +H +PI ++P LAR LFK+
Sbjct: 241 IITNPEHYAVVVKYDAKKMAAPTVTGKGGDAMAKHLRDLARQHQVPIIQDPPLARYLFKK 300
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
I S IP + VA+ + + Y K
Sbjct: 301 TEIGSMIPEDAFVGVARALRRAYQIK 326
>gi|194292000|ref|YP_002007907.1| sctu: non flagellar t3S system conserved inner membrane protein.
flhb/hrpn/yscu/spas family [Cupriavidus taiwanensis LMG
19424]
gi|193225904|emb|CAQ71851.1| SctU: non flagellar T3S system conserved inner membrane protein.
flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG
19424]
Length = 344
Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats.
Identities = 81/343 (23%), Positives = 157/343 (45%), Gaps = 4/343 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ K + +K+++A G P S + + L L L + S H
Sbjct: 2 SDSEKNLEATRRKLDEARKRGEVPRSSDVTSAVVFLGVLAGLWLLGRYFVRLFQSLWHSA 61
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ S Q + ++ L + V+P + L ++ GI +Q P++ +KP
Sbjct: 62 MGSVPQHLAD--QQMLVLGEAAARFLLMGVLPIVGLALVCGIVGAFLQVGPLVAFEQIKP 119
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
R++ EG+KR++++ NLVN K VKI+L+ ++ + + A P IL
Sbjct: 120 DLARLNPAEGLKRMFAVRNLVNLAKILVKILLLAGLVYVLALGAIEDGVRTGYARPAEIL 179
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + ++ + + V+D HQ+ + +MS E + E K++ G+PI+ R
Sbjct: 180 LLVAYIILRMCCWAAVIYLVMAVVDYVHERHQFMKRQRMSVDEYRREYKETQGDPIMAGR 239
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+++ + E +T ++ + T YA+ALRY P +VAKG +A ++R+
Sbjct: 240 RRAAFFEAAFFGVSERVRVSTAVVYS-TQYAVALRYD-GPGTLPRVVAKGSGQVAARIRQ 297
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
A ++ +P + LA+ L+ VP++ I ++ VA+L+
Sbjct: 298 AAADYLVPSAFDSDLAQRLYLNVPLDRFIDRTLFERVAELMRW 340
>gi|254250203|ref|ZP_04943523.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
cenocepacia PC184]
gi|124876704|gb|EAY66694.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
cenocepacia PC184]
Length = 343
Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 158/348 (45%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ +A +G+ P S E + + + L V +
Sbjct: 1 MAEKDQ------KPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAVGAADP--AARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYY-GGMGSLPWVLARGEGDAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA++L++ P N I P ++AVAQL+
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338
>gi|238755990|ref|ZP_04617315.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
gi|238705779|gb|EEP98171.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
Length = 386
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 81/354 (22%), Positives = 154/354 (43%), Gaps = 14/354 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ KK+ D+ +G + ++ + ++ + + F S + ++
Sbjct: 1 MAE------KTEQPTDKKVRDSAKKGQSFKGKDLIAAAVLVCGALAISGFSS--LTALGH 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L +L S ++ K+ L L VIP LL ++ G+ L+Q L
Sbjct: 53 LLQKVLLSPSEIKIS------AYLDELYRLFLYAVIPVLLCCLLPGMLLSLLQSRFRLAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +F ++ G K+I+ I L +K+ + ++ GT I + + A
Sbjct: 107 EALKINFSHLNPISGFKKIFGIRPLKELVKALLYLLAFGTSIYTFILLWRREVFMLYHAE 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ + + L L +LD + LKM KQE+K E K++ G+P
Sbjct: 167 LEEMITQWGRLCIIFIFVFLASSLILLLLDTLTELFLFIKDLKMEKQEVKKEYKENEGDP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK +K I R + + + +++ NPTH AL + + + + P+++ K QN A
Sbjct: 227 QIKQARKEIHREILSEETKNGIKNSQVVMANPTHIALGIYFDPSVAELPLIIVKAQNAQA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+ + A E IP+ + LAR L++ I S I + ++ + ++
Sbjct: 287 RAVIAYAEEQGIPVVRDIPLARRLYRNNSIFSFIRDDDLLDIMNILIWLKRIEL 340
>gi|125657194|gb|ABN48682.1| FlhB [Burkholderia pseudomallei]
Length = 335
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 68/307 (22%), Positives = 137/307 (44%), Gaps = 1/307 (0%)
Query: 47 LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
+L +P + L LL +++ + +S++ +I + +
Sbjct: 1 MLVLLAPSWLAEFRALF-LLELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCV 59
Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
+ L+ +L+ +KP F R++ + R+ S + F S +K + + ++
Sbjct: 60 VLGSLLPGGWILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLS 119
Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
L L F + + + + D+ + + +M+K
Sbjct: 120 ATTLAAFLRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTK 179
Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
QE+KDE K + G P +++R + + R + + + A +++ NPTHYA+AL+Y
Sbjct: 180 QEVKDEHKNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRA 239
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
+AP ++AKG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++
Sbjct: 240 EAPFVIAKGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVL 299
Query: 347 YKIYHKK 353
+ K
Sbjct: 300 TYVLQLK 306
>gi|285018286|ref|YP_003375997.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473504|emb|CBA16007.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 358
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 148/343 (43%), Gaps = 5/343 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK D+ +G + + + ++ + + F F + L L S
Sbjct: 3 EKTEKPTQKKRADSEKKGKSFKAADIGAMLLLIVGGVAIPFLFD---FDSIFSLFKLFGS 59
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A Q K D+ + L A + + +++ LIQ L + ++ F
Sbjct: 60 AVQAK--DLPGPFAYVKTLGWVAVKGTVIFIVVCSFATTVPSLIQSRLTLAFDAIRFDFD 117
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ G+K++++I + +K+ + II + I + + + + ++
Sbjct: 118 ALNPANGLKKLFNIRVAKDLVKTLLYIITTSAAVAIFIHNHCRELFMTMRMPEFALCSEL 177
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + + ++ + VLD Y + LKM K E+K EIKQS GNP +K+RQ+
Sbjct: 178 GHLAKYLCLYMIGMAIPVLVLDCLTEYFLYIHGLKMEKYEVKQEIKQSQGNPEVKSRQRQ 237
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
++R + K+ E +T ++ NPTH A+ + P++ + + A+++ A
Sbjct: 238 LSREVLSEKVKENVKGSTFVLANPTHIAIGIYADFKVAPFPMVSVREVDARAREVIDYAM 297
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ +P+ + LAR +F + + + + +++ +
Sbjct: 298 KCGVPVLRDIPLARRIFDRTQRYQFVSTEDLEPIIRILTWLRQ 340
>gi|254255060|ref|ZP_04948377.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
gi|124899705|gb|EAY71548.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
AUO158]
Length = 392
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 158/344 (45%), Gaps = 9/344 (2%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +KTE + KK D+ G +R+A + +L + + I +V D+
Sbjct: 2 SAQSKTEEATPKKRRDSAERGQILKARDAVVACVMLCGVFVVSKMSLHEIGAVMIDMMQ- 60
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
++ S++ LL ++V P LL+ ++ L+Q VL +K
Sbjct: 61 ----NGFDVDTSSYVKSLLVAC----LKVVAPVLLVCILAAAVPSLMQSKFVLATKALKI 112
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+F+ ++ G K+I+++ + +F+KS + +++ ++I N +L ++ H ++
Sbjct: 113 NFEALNPVRGFKKIFNLRTVKDFVKSLLYLVVFSVAVSIVWVRNKEKLLAQFYSDLHGVV 172
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ +++ L + +LD+ +L+M+K+E+K E K++ G+P IK R
Sbjct: 173 GLWKDLMVDLVLTCLGCALVILILDVLVEMLIHRKELRMAKEEVKRERKENEGSPEIKGR 232
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+K + + + + + +II NPTH A+ + + + P++ +N A +R+
Sbjct: 233 RKEMHQELLSEQDKHDIQNSKMIIANPTHVAVGIYFNPSHLPYPLVSISERNQRALAVRR 292
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LAR ++K + + V +L+ +
Sbjct: 293 YAEKIGVPVIVDVPLARQIYKSHKRYEIVSLDVLEPVVRLMVWL 336
>gi|107025878|ref|YP_623389.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
gi|116692938|ref|YP_838471.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
gi|105895252|gb|ABF78416.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
gi|116650938|gb|ABK11578.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
Length = 343
Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats.
Identities = 74/348 (21%), Positives = 158/348 (45%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ +A +G+ P S E + + + L V +
Sbjct: 1 MAEKDQ------KPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYY-GGMGSLPWVLARGEGDAG 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA++L++ P N I P ++AVAQL+
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338
>gi|325527471|gb|EGD04805.1| flagellar biosynthesis pathway component [Burkholderia sp. TJI49]
Length = 343
Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 153/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ +A +G+ P S E + I L + + ++ +
Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSACFAGVCIALAVGIGALFARLQALFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A + + I L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 AG--AADPSARIAVLIDGAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLMPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTTLLVATLGWVIVESLDAAVQSGFTRPISILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI ++ K+KMS E++ E K+ G+P I+ +++
Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRREFNQKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREAQFAALPDRIGFASVVVYSP-RVAVALYY-GGVGTLPWVLARGEGEAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA+SL+ P N I ++ VAQL+
Sbjct: 299 DALRPTLANAGLAQSLYDTTPENGTIQQQHFREVAQLLKW 338
>gi|307947535|ref|ZP_07662868.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
gi|307769353|gb|EFO28581.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
Length = 350
Score = 228 bits (583), Expect = 8e-58, Method: Composition-based stats.
Identities = 64/347 (18%), Positives = 149/347 (42%), Gaps = 4/347 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D + K + + A +G S++ L L +++ + + ++
Sbjct: 1 MSGGDTSEEKNLPATEHTLRKAREKGQVAQSKDFVTMLITLGGLFFVIMAWPSFVRMFSN 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LN 119
L L Q +LED + L +IP +++ ++ I + ++ + + +
Sbjct: 61 SLDFALRGF-QMELEDSYR--PMFVVSILETLYSLIPLVVILVLTAILANILHKKGIPFS 117
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
++ + P FK+++ G K+++ + F S +K+++ + + + +L+
Sbjct: 118 MHPIVPDFKKINPASGFKKMFGARGMTEFSVSLLKVLIWFVVAGMFIWLALPAILNSPIC 177
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
+ K+++ + + VLD+ + + KM++ ++K E+K++ GN
Sbjct: 178 EFPCTTAVTNDLLIKIILAAAILLVIGGVLDLPLQEALFKKENKMTRTQLKKELKETMGN 237
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P K+ +K + + +I + A+ALR+ + P++VAKG+
Sbjct: 238 PEYKSARKEAHKEMTQVNTTAGKDATANLIVSGADMAIALRFHAEDTPVPIVVAKGRGEQ 297
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
++ + ++PI EP LA+ LF+ + I ++ +A LI
Sbjct: 298 GDEILASGGQMSVPIEHEPELAQDLFRTLLPGQQIEERQFQKIALLI 344
>gi|197286514|ref|YP_002152386.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|227357588|ref|ZP_03841941.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
ATCC 29906]
gi|194684001|emb|CAR45289.1| putative type III secretion system protein [Proteus mirabilis
HI4320]
gi|227162298|gb|EEI47302.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
ATCC 29906]
Length = 353
Score = 228 bits (583), Expect = 8e-58, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 144/354 (40%), Gaps = 14/354 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ KK++D+ +G + S+E +IYL F +
Sbjct: 1 MAE------KTEKPTQKKLDDSAKKGQSFKSKELVSGLVYFIGVIYL--FNQVKLDEFNQ 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL T L+ ++ L +V+P +++ + G L L
Sbjct: 53 FYQSLLLHPTGISLKSYVEVISKL------FFDIVLPIIIVTFLSGAIPSLFSSHFKLAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K F ++ G K+I+SI + +F+K+ + II+ + + + ++ A+
Sbjct: 107 EAIKIDFNHINPISGFKKIFSIRTIKDFLKTILFIIIFLITCYVFMILHMGEVVILYRAD 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ V + + + + +L+I + + + M K E+K E K GNP
Sbjct: 167 LEGVIDKWCSLVVSFIFIFFILSIPILILNIIADFFLFIKDMMMEKHEVKQEHKNMEGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ ++ + + + M ++ +I NPTH A+ + + P++ N A
Sbjct: 227 EIKSVRRQLHQELLDEPMKRVIRDSSAVIVNPTHVAVGIYFDPDNGIMPIVSLSCTNAKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
++ A + P+ P LAR L + + I V ++ + +I
Sbjct: 287 LAVKAYAKKVGTPVIRYPELARKLHHKYHLFEVIIDQDLLDVMDVLIWLKRVEI 340
>gi|284007395|emb|CBA72801.1| type III secretion system protein SpaS [Arsenophonus nasoniae]
Length = 345
Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats.
Identities = 77/345 (22%), Positives = 149/345 (43%), Gaps = 8/345 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ KK++DA +G + S++ + I +YL + ++ L
Sbjct: 2 SANKTEKPTPKKLKDAAQKGKSFKSKDLVISCLIFLGCLYLTNYI--NFTTIIEIWANTL 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + ++F +A ++ +P L L ++ + + + Q + +K
Sbjct: 60 KNNHSITPLNYTFVLF------FTALKIFLPFLFLCILIIMLTTMAQTGFKIATKVLKFD 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+I+SI + +F+K+F+ II+ + I N + I N S+
Sbjct: 114 FNNLNPINGVKKIFSIRTIKDFIKTFLFIIIFFIVTYIYWNNNKKIIFSQIYLNIESVFI 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
V +I++LL + +LD Y LKM K E+K E K+ GNP IK+++
Sbjct: 174 VWKELVSNFIIILLLSSFIILILDAVAEYFIHIKDLKMDKNEVKREYKEQEGNPEIKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K + + ++ + +I NPTH + + P++ N A R
Sbjct: 234 KELHVEILSEQVKSDIESSKFMIANPTHIIIGIYLNPQIVAIPMVSVLETNQRALAARAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A + +P+ E LAR ++ + S I V +++ +
Sbjct: 294 AEKEGVPVIENIVLARRIYNTHQLYSFINLEEIGEVIKILSWLQK 338
>gi|148261120|ref|YP_001235247.1| type III secretion exporter [Acidiphilium cryptum JF-5]
gi|146402801|gb|ABQ31328.1| type III secretion exporter [Acidiphilium cryptum JF-5]
Length = 335
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 82/322 (25%), Positives = 159/322 (49%), Gaps = 3/322 (0%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
SRE + +S+ L ++ + + L A ++ + + L ++
Sbjct: 9 SREVATLASLGVALAVMIGVLPSSAERLANTLASAFTRA--ATVDSGAGLSRALWQAGMA 66
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
+ + IP + I L+Q N + +F R++ GI +++ NL +
Sbjct: 67 SLGVFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQ 126
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
S +K+ +G + + + + + + ++L F ++ +L ++ +D
Sbjct: 127 SILKLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVD 186
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
+++ + +KMS+QE+KDE K++ G+P ++ R K+ + + + A +RA ++IT
Sbjct: 187 FVLVRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVIT 246
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NPTHYA+AL Y + +AP +VAKG + A ++R +A E IPI P LAR+LF+Q +
Sbjct: 247 NPTHYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DV 305
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+ I P Y+AVA++I I+
Sbjct: 306 ETEILPEHYRAVAEIIAYIWKL 327
>gi|238898600|ref|YP_002924281.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466359|gb|ACQ68133.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 349
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 70/322 (21%), Positives = 140/322 (43%), Gaps = 9/322 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ KK++D+ +G + +++ + +LA + YL+ F S + ++
Sbjct: 2 SSNKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFAS--FSELMFLYKEII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ + + + ++ +P LLL + L+Q +L +K +
Sbjct: 60 SFNFEYDIH------RYTISVLSIGFKIFLPILLLCIFCSALPSLLQTGFLLATKAIKLN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD-FISANPHSIL 185
++ +G K+I+S+ + +KS + + + + + ++P+ I
Sbjct: 114 LGALNPTKGFKKIFSLRTAKDAVKSVLYLGTFFVAVLVVWNTKRGVLFQQLHGSSPYEIT 173
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
++ +L L I + +LD Y LKM KQE+K E+K+ GNP IK R
Sbjct: 174 MVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIKGR 233
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ + + ++ + II NPTH A+ + P + N A +R
Sbjct: 234 RRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAVRA 293
Query: 306 IAYEHNIPIFEEPSLARSLFKQ 327
A + +P+ + SLAR+++K
Sbjct: 294 YAKKVGVPVIQNISLARAIYKN 315
>gi|62181389|ref|YP_217806.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62129022|gb|AAX66725.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
Length = 356
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 153/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y + +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFRTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|170767115|ref|ZP_02901568.1| EscU protein [Escherichia albertii TW07627]
gi|170124553|gb|EDS93484.1| EscU protein [Escherichia albertii TW07627]
gi|315617516|gb|EFU98122.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 317
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/312 (23%), Positives = 144/312 (46%), Gaps = 3/312 (0%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
L + + + + ++ + S + L I I L + +
Sbjct: 2 AAVQSLILFSFFSLYGASFFIDIVGLVNTAINSLNRPFLYAIREI---LGSVLNILLLYI 58
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
+P L+ + + + + Q + + +KPS +++S++ +K I+S+ ++ KS K+
Sbjct: 59 LPISLIVFVGTVATGVSQTGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELFKSVFKL 118
Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
+++ I ++F + N + L F V + +L +V D +
Sbjct: 119 VIIALIFYFMGHSYASEFINFTNLNAYQTLVLVAFFVFLLWKGVLFGYLLFSVFDFWFQK 178
Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
H+ K+KMSK E+K E K + GNP IK ++ + + ++T+I+ NPTH
Sbjct: 179 HEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHI 238
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I
Sbjct: 239 AICLYYKLGETPLPLVIETGKDAKALQIIKLAERYDIPVIEDIPLARSLYKNINKGQYIT 298
Query: 336 PVFYKAVAQLIY 347
F++ VAQLI
Sbjct: 299 EDFFEPVAQLIR 310
>gi|15088606|gb|AAK84117.1|AF369954_15 YsaU [Yersinia enterocolitica]
gi|16799075|gb|AAF82331.2|AF005744_10 YsaU [Yersinia enterocolitica]
Length = 374
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 77/346 (22%), Positives = 151/346 (43%), Gaps = 8/346 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D+ +G + S++ ++A + F S +Y + S L +L S
Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAISGFSS--LYGLGSLLQRILLS 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ +E LL L + V+P LL + G L+Q L VK F
Sbjct: 61 PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ G K+I+++ +L +K+F+ +++ T + + + ++
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+++ L + ++D + + LKM KQE+K E K + G+P IK+ ++
Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + ++ +T ++ NPTH A+ + Y P L+ K + L AK + A
Sbjct: 235 LHQEILSEEVKSNVRGSTFVMANPTHIAMVIYYNDDIAPLPYLMMKTRGLQAKAVIAYAE 294
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+P+ + +AR L++ +S I V +I + ++
Sbjct: 295 SQGVPVVRDIPVARQLWRNYRKDSFINDQGLDDVMHIINWLVRVEL 340
>gi|34498076|ref|NP_902291.1| surface presentation of antigens protein SpaS [Chromobacterium
violaceum ATCC 12472]
gi|34103931|gb|AAQ60291.1| secretory protein / flagellar biosynthetic protein flhB
[Chromobacterium violaceum ATCC 12472]
Length = 353
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/347 (21%), Positives = 148/347 (42%), Gaps = 11/347 (3%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ KK++DA +G + SR+ + L + YL+ F S + + L
Sbjct: 2 SSNKTEKPTRKKLQDAAKKGQSFKSRDLVVACLTLCGVAYLVSFGS--LVELMGIFRQAL 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A Q + + VF +L++P LL + L+Q VL +K +
Sbjct: 60 AGGFQLDMRGYAQAVF------WQGLKLLLPIFLLCVAASALPVLLQTGFVLASEALKLN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ ++ G K+++S+ + +K+ + + + + ++ + ++ + I
Sbjct: 114 LEALNPINGFKKLFSLRTVKEAVKALLYLASFVVAVALIWRKHKALLFAQLNGSVMDIAA 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L I + +LD Y + +KM KQE+K E+K+ GNP IK+R+
Sbjct: 174 VWRELLLSLVLTCLGCIVLILILDALAEYFLFMKDMKMDKQEVKREMKEQEGNPEIKSRR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + ++ + +II NPTH A+ + + P + N A +R
Sbjct: 234 REAHFELLSEQVKSDVENSRLIIANPTHIAIGIYFRPELVPIPFVSVMETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + +P+ + LAR + S I V +++ + +
Sbjct: 294 AEKVGVPVVRDVPLARRILASHRRYSFINLE---EVDEVLRLLEWLE 337
>gi|16766193|ref|NP_461808.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|161615799|ref|YP_001589764.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167993122|ref|ZP_02574217.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168230957|ref|ZP_02656015.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168235927|ref|ZP_02660985.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168242624|ref|ZP_02667556.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168261990|ref|ZP_02683963.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168463978|ref|ZP_02697895.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194444022|ref|YP_002042128.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194451625|ref|YP_002046847.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194468977|ref|ZP_03074961.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194735131|ref|YP_002115839.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197262027|ref|ZP_03162101.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|198242012|ref|YP_002216856.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200388611|ref|ZP_03215223.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204928232|ref|ZP_03219432.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205353830|ref|YP_002227631.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858149|ref|YP_002244800.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|730801|sp|P40702|SPAS_SALTY RecName: Full=Surface presentation of antigens protein spaS
gi|404293|emb|CAA51927.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16421435|gb|AAL21767.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161365163|gb|ABX68931.1| hypothetical protein SPAB_03590 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402685|gb|ACF62907.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194409929|gb|ACF70148.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194455341|gb|EDX44180.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194710633|gb|ACF89854.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195633151|gb|EDX51565.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197240282|gb|EDY22902.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197290674|gb|EDY30028.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197936528|gb|ACH73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199605709|gb|EDZ04254.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204322554|gb|EDZ07751.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205273611|emb|CAR38598.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205328759|gb|EDZ15523.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334405|gb|EDZ21169.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205338041|gb|EDZ24805.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205349087|gb|EDZ35718.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206709952|emb|CAR34306.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261248023|emb|CBG25856.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995015|gb|ACY89900.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159446|emb|CBW18964.1| type III secretion system secretory apparatus [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312913905|dbj|BAJ37879.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223436|gb|EFX48502.1| Surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322614295|gb|EFY11226.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621641|gb|EFY18494.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624502|gb|EFY21335.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628833|gb|EFY25616.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633440|gb|EFY30182.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635984|gb|EFY32692.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639692|gb|EFY36377.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646875|gb|EFY43378.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650643|gb|EFY47048.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654745|gb|EFY51064.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658965|gb|EFY55218.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664468|gb|EFY60662.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668283|gb|EFY64440.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673737|gb|EFY69838.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322677798|gb|EFY73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681372|gb|EFY77404.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322683774|gb|EFY79784.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323131239|gb|ADX18669.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323193837|gb|EFZ79040.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200307|gb|EFZ85389.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203190|gb|EFZ88219.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323205563|gb|EFZ90528.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210074|gb|EFZ94977.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216377|gb|EGA01104.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221124|gb|EGA05555.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226946|gb|EGA11128.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230770|gb|EGA14888.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234879|gb|EGA18965.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238918|gb|EGA22968.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241618|gb|EGA25649.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248235|gb|EGA32171.1| type III secretion system protein SpaS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251181|gb|EGA35054.1| type III secretion system protein SpaS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256065|gb|EGA39803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263200|gb|EGA46738.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264297|gb|EGA47803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271123|gb|EGA54551.1| type III secretion system protein SpaS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624618|gb|EGE30963.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326628939|gb|EGE35282.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332989759|gb|AEF08742.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 356
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 152/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|206563886|ref|YP_002234649.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|18092677|gb|AAL59406.1| BcscU [Burkholderia cenocepacia]
gi|28394258|gb|AAO31733.1| BcscU [Burkholderia cenocepacia]
gi|198039926|emb|CAR55904.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 343
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 73/348 (20%), Positives = 157/348 (45%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ +A +G+ P S E + + + L + +
Sbjct: 1 MAEKDQ------KPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAVGAADP--AARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P
Sbjct: 173 PVSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A
Sbjct: 233 HIQAKRRQLAREVQFASLPDRIGYASVVVYSP-RVAVALYY-GGMGSLPWVLARGEGDAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA++L++ P N I P ++ VAQL+
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFREVAQLLKW 338
>gi|323388139|gb|ADX60335.1| type III secretion protein RscU [Pseudomonas fluorescens]
Length = 365
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 70/350 (20%), Positives = 158/350 (45%), Gaps = 11/350 (3%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
K A + KK++D +G S++ + A LF + L +
Sbjct: 2 SDSGEKKHAATPKKLKDQRQKGQVAQSQDVGKLLVLTALSEIALFTAETSMQRFQQLLVM 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
++ Q + + + LT + + L + + S IQ + +K
Sbjct: 62 PMSRFGQPFVRALEEV---LTEGLIVFFSFALLMAGLAIAVKLISGWIQFGFLFAPESLK 118
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
+F R++ +K+++S ++ N + K +L+ I+ + ++ + +++ +++ S
Sbjct: 119 LNFSRLNPISQVKQMFSAKSVTNLLMGLAKALLLALILYVVISPSLGALINLATSDLQSY 178
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ R +L L + L ++D+ H + ++M++ E+ E K G+P +K
Sbjct: 179 ILALIILFRHLLHACLGLLLVLALIDMALQKHFFAKSMRMTQVEVVKEYKDMEGDPHVKG 238
Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++++A+ + + + A +++ NPTH+A+AL Y + P+LV KG + A+
Sbjct: 239 QRRALAQQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAEAR 298
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
K+ A ++P+ + LAR+L+++ + + IP +AVA +Y
Sbjct: 299 KLIDRAKAADVPVIQCVWLARTLYEK-KLGANIPRETLQAVA----FLYR 343
>gi|255024132|ref|ZP_05296118.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
J1-208]
Length = 288
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 85/297 (28%), Positives = 158/297 (53%), Gaps = 9/297 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL + ++++ + ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 AFVALLKQPPK-----LANMESYSLFYVMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P
Sbjct: 172 WLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRP 231
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
+K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++
Sbjct: 232 EVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGED 288
>gi|75764710|ref|ZP_00744124.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74487802|gb|EAO51604.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 271
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/265 (27%), Positives = 144/265 (54%)
Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
+ + ++ P L+L F + +Y+IQ + + +KP R++ + R++S +LV
Sbjct: 1 MGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLV 60
Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
+ +KS + L+G + + +N ++ I N + L ++ + + IL+ + L
Sbjct: 61 DILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVL 120
Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
+++D + ++ +KM K+E+K E K + G+P +K ++K+ + ++ + + AT
Sbjct: 121 SIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHAILQGTIAKKMDGAT 180
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
I+ NPTH ++ LRY + + AP++VAKG++ +A +R +A E IP+ E LARSL+
Sbjct: 181 FIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYY 240
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYH 351
QV + IP Y AV +++ +
Sbjct: 241 QVEEDETIPEDLYVAVIEVMRYLIQ 265
>gi|167550264|ref|ZP_02344021.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205324806|gb|EDZ12645.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 356
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 152/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVDIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|16761664|ref|NP_457281.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143148|ref|NP_806490.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56414839|ref|YP_151914.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|168820416|ref|ZP_02832416.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|197247812|ref|YP_002147784.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197363767|ref|YP_002143404.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|213052431|ref|ZP_03345309.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425711|ref|ZP_03358461.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580230|ref|ZP_03362056.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609307|ref|ZP_03369133.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213649913|ref|ZP_03379966.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213853013|ref|ZP_03382545.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|238909654|ref|ZP_04653491.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|25322234|pir||AC0851 secretory protein (associated with virulence) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16503965|emb|CAD05994.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138781|gb|AAO70350.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56129096|gb|AAV78602.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197095244|emb|CAR60795.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197211515|gb|ACH48912.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|205342919|gb|EDZ29683.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320087292|emb|CBY97057.1| Surface presentation of antigens protein spaS [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 356
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 152/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|224584665|ref|YP_002638463.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|224469192|gb|ACN47022.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322715873|gb|EFZ07444.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 356
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 152/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A + + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|134294009|ref|YP_001117745.1| type III secretion exporter [Burkholderia vietnamiensis G4]
gi|134137166|gb|ABO58280.1| type III secretion exporter [Burkholderia vietnamiensis G4]
Length = 342
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 154/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + P++K++ +A +G+ P S E + + + L + + ++ +
Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A + + L+ + + L + ++ G+ + +Q V+ + + P
Sbjct: 63 AGAADP--AARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K ++S+ NLVN K +K +L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSVQAGFTRPVSILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI H++ K+KMS E++ E K+ G+P I +++
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LAREAQFAALPDRIGYASVVVYSP-RVAVALYY-GGIGSLPWVLARGEGEAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA +L++ P N I ++ VAQL+
Sbjct: 299 DALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLLKW 338
>gi|74314954|ref|YP_313372.1| surface presentation of antigens protein SpaS [Shigella sonnei
Ss046]
gi|82524599|ref|YP_406194.1| surface presentation of antigens protein SpaS [Shigella dysenteriae
Sd197]
gi|187734501|ref|YP_001883219.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
gi|194435373|ref|ZP_03067572.1| Spa40 [Shigella dysenteriae 1012]
gi|32307049|gb|AAP79019.1| Spa40 [Shigella flexneri]
gi|73858431|gb|AAZ91137.1| Spa40 [Shigella sonnei Ss046]
gi|81243997|gb|ABB64706.1| Spa40 [Shigella dysenteriae Sd197]
gi|187426997|gb|ACD06272.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
gi|194416383|gb|EDX32553.1| Spa40 [Shigella dysenteriae 1012]
gi|320182867|gb|EFW57742.1| surface presentation of antigens protein SpaS [Shigella flexneri
CDC 796-83]
Length = 342
Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats.
Identities = 70/342 (20%), Positives = 143/342 (41%), Gaps = 8/342 (2%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G + ++ + IL ++ FFS + V ++ +
Sbjct: 4 KTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS--LSDVMLLYRYVIIND 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+I+ + + + + P + + + L+Q VL +K F
Sbjct: 62 -----FEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPT-LVQTKFVLATKAIKIDFSV 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ +G+K+I+SI + F KS + +I++ + + + ++ +
Sbjct: 116 LNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L F + +LD + + + M KQEIK E + G+ K+R++ +
Sbjct: 176 GLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRREL 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + + +++ NPTH A+ + + AP + N A +RK A E
Sbjct: 236 HIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
IP + LAR L+K S + V +LI +
Sbjct: 296 VGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337
>gi|167589635|ref|ZP_02382023.1| type III secretion exporter [Burkholderia ubonensis Bu]
Length = 343
Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 153/340 (45%), Gaps = 4/340 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K + PS+K++ +A +G+ P S E + + + L + ++ +
Sbjct: 3 EKNQKPSAKRLREAREKGDVPKSAETISSAFFVGACVALAVGLGALFERLQGLFRLVFDA 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
A + + L+ + L + +M G+ + +Q V+ + + P
Sbjct: 63 AGAADP--GARLAALVGSAARDWMTLSAEIVGAGLMLGLLAGFVQVGGVMAWSRLVPQLS 120
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ EG+K + S+ N+VN +K +K +L+ + + E+ + P SIL
Sbjct: 121 RLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESLDPAVQSGFTRPMSILALI 180
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ + L + ++DI +H++ K+KMS E++ E K G+P I+ +++
Sbjct: 181 VKLLMLLFGWAALVYVVMAIIDIVHQHHEFNKKMKMSIDEVRREHKDDEGDPHIQAKRRQ 240
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+AR + + A++++ + + A+AL Y P ++A+G+ A+++ ++A
Sbjct: 241 LARELQYASLQDRIDFASVVVYS-SRVAVALYY-GGMGSLPWVLARGEGEAAERIVRLAR 298
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+ P LA++L+ P N I P ++ VA L+
Sbjct: 299 DALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALLKW 338
>gi|13449103|ref|NP_085319.1| Type III secretion protein [Shigella flexneri 5a]
gi|31983539|ref|NP_858289.1| surface presentation of antigens protein SpaS [Shigella flexneri 2a
str. 301]
gi|60415918|sp|P0A1M8|SPAS_SHIFL RecName: Full=Surface presentation of antigens protein spaS;
AltName: Full=Spa40 protein
gi|60415919|sp|P0A1M9|SPAS_SHISO RecName: Full=Surface presentation of antigens protein spaS;
AltName: Full=Spa40 protein
gi|13310651|gb|AAK18475.1|AF348706_164 Type III secretion protein [Shigella flexneri 5a]
gi|303896|dbj|BAA02832.1| spa40 [Shigella flexneri]
gi|829083|dbj|BAA09165.1| ORF25 [Shigella sonnei]
gi|12329100|emb|CAC05831.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
gi|18462531|gb|AAL72303.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|281603911|gb|ADA76894.1| surface presentation of antigens protein SpaS [Shigella flexneri
2002017]
Length = 342
Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats.
Identities = 70/342 (20%), Positives = 143/342 (41%), Gaps = 8/342 (2%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G + ++ + IL ++ FFS + V ++ +
Sbjct: 4 KTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS--LSDVMLLYRYVIIND 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+I+ + + + + P + + + L+Q VL +K F
Sbjct: 62 -----FEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPT-LVQTKFVLATKAIKIDFSV 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ +G+K+I+SI + F KS + +I++ + + + ++ +
Sbjct: 116 LNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L F + +LD + + + M KQEIK E + G+ K+R++ +
Sbjct: 176 RLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRREL 235
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ + + +++ NPTH A+ + + AP + N A +RK A E
Sbjct: 236 HIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANE 295
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
IP + LAR L+K S + V +LI +
Sbjct: 296 VGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337
>gi|218988947|gb|ACL13610.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. salamae serovar Sofia]
Length = 356
Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 153/343 (44%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A ++ + D S VF + + +IP +LL ++ L+Q VL +KP+
Sbjct: 60 ADNFEQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALRALLQAGFVLATEALKPN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFLQLNGNVVGIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|85058550|ref|YP_454252.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
str. 'morsitans']
gi|45504758|gb|AAS66849.1| YsaU [Sodalis glossinidius]
gi|84779070|dbj|BAE73847.1| type III secretion apparatus SpaS [Sodalis glossinidius str.
'morsitans']
Length = 370
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 68/354 (19%), Positives = 152/354 (42%), Gaps = 18/354 (5%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P+ K+ ++ +G + ++ + ++ + YL Y +
Sbjct: 1 MAE------KTEKPTEKRSRESAQKGQSFKVKDVTTTVVLIGGIAYL-------GYGMDF 47
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ + E +S+ +L++ L +L +P + + + G S L+Q V+
Sbjct: 48 QPFIAFYNNVVLNGERLSYQAYLISLAMLFM-QLTLPIVAVCFIAGTFSTLLQTRMVIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +F ++ +G+KRI+++ + +K+ + + + + +L N
Sbjct: 107 KAIKLNFDALNPVKGLKRIFNLRAVKELVKTLCYVAVFVVGVNYFQSHYLKELLSIYHGN 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K++ + + + VLD Y + +KM K E+K E K++ GNP
Sbjct: 167 IWQVIRIWSELAVKLVFIYVGVSLIVLVLDGLCEYFLQFKDMKMEKHEVKQEHKENEGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ +++ + A + +I+ NPTH AL + + P + + N+ A
Sbjct: 227 EIKSARRNAHFELLSGAEQAAIRSSEMILANPTHIALGIFFNPDVAMLPFITLRATNMKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYH 351
+ + A + +P+ LAR L+K ++S I + + +++ +
Sbjct: 287 RAIIAYAEKVGVPVVRSIPLARRLYKNYTVHSFISLNDNDLIE-IMRILIWLKQ 339
>gi|161502069|ref|YP_001569181.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863416|gb|ABX20039.1| hypothetical protein SARI_00086 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 356
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 150/343 (43%), Gaps = 8/343 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A ++ + D S V + +IP +LL ++ L+Q VL +K +
Sbjct: 60 AENFEQSMADYSLAVL------GVGLKYLIPFMLLCLVCSALPTLLQTGFVLATEALKLN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++ EG K+++S+ + + +K+ + + I + + ++ N I
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVMGIAV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + ++ + +I+ NPTH + + + P++ N A +R
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPFPMISVYETNQRALAVRSY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A + +P+ + LARSLFK + V +L+ +
Sbjct: 294 AEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 336
>gi|293416348|ref|ZP_06658987.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
gi|291431704|gb|EFF04687.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
Length = 362
Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 75/347 (21%), Positives = 152/347 (43%), Gaps = 11/347 (3%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K+ E+A +G + SR+ + L YL S + S+ L +
Sbjct: 2 SGNKTEKPTRKRREEAARKGQSFRSRDFIVACLTLGGTAYLASVAS--LRSLMEVLGQAV 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ Q + D + VF S ++++P L L + ++Q VL ++P
Sbjct: 60 SFHFQINIADYTEQVF------CSGMKIILPFLALCLFCSALPSILQTGFVLATKALQPR 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+ +GIK+I+S+ + +K+ + + + EN + ++ N +
Sbjct: 114 LSALDPTKGIKKIFSLRTVKEAVKAILYLGSFIISGMLFWFENKRLVFSQVNGNLFVVAD 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ ++ + L + +LD Y +KM K+E+K E+K++ GNP +K+R+
Sbjct: 174 VWRHLLFSLVALCLGCSVIILLLDALAEYFLVMKDMKMDKEEVKREMKETEGNPEVKSRR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ I + ++ + +II NPTH A+ + + P++ + N A +R+
Sbjct: 234 REIHMDILSEQIKSDIDNSRLIIANPTHIAVGIYFKPEIAPYPLISVREANQRALAVRQY 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A + IP+ + LAR +FK + +V +++ + +
Sbjct: 294 AEKVGIPVVVDIRLARRIFKTHRRYDVVNLE---SVDEILRLLVWLE 337
>gi|259908635|ref|YP_002648991.1| surface presentation of antigens protein SpaS [Erwinia pyrifoliae
Ep1/96]
gi|224964257|emb|CAX55764.1| Export protein for peptides using the type III secretion system
[Erwinia pyrifoliae Ep1/96]
gi|283478607|emb|CAY74523.1| Surface presentation of antigens protein SpaS [Erwinia pyrifoliae
DSM 12163]
Length = 363
Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats.
Identities = 78/356 (21%), Positives = 150/356 (42%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK +D+ +G + ++ ++++ +LL+ S S
Sbjct: 1 MAQ------KTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFIS 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++D + + +L P + + + GI + L Q +
Sbjct: 53 YFSKILLNENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ EGIK+I+S+ + F+KS +++ +T + L A
Sbjct: 107 QALKLNFKALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAG 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K + + + + + D Y LKM K E+K E K+S GNP
Sbjct: 167 IGQLIVSLLSLTVKAVTIFIAYSLFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ ++ + + + M A +++++ NPTH A+A+ + P + + N A
Sbjct: 227 QIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYHKKI 354
K A E IP+ L R L+K S I AV ++ + +I
Sbjct: 287 KAALLYAEEIGIPVVRNVLLTRRLYKSYVQYSFISINDDDLMAVMDILIWLRQVEI 342
>gi|238757869|ref|ZP_04619051.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
35236]
gi|238703854|gb|EEP96389.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
35236]
Length = 304
Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats.
Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 1/293 (0%)
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMMFGIGSYLIQRIP 116
+ + L+ A + S+ V ++T SA L+ + I S L Q
Sbjct: 1 MIQRVAGLMLLAAGLINKPFSYAVGVMTRALFSAGGLMFALFGGMLAAATIASVLAQVGF 60
Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
++ + +R+S +K+I+S+ +L+ +KS +K+IL+ I T
Sbjct: 61 MVASKALGFKAERISPVSNLKQIFSLRSLIELIKSCLKVILLCLIFVYLFRYYAPTFQAL 120
Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
+P + VR + +L F L V D + H + +MSK+++K E K
Sbjct: 121 PYCDPACAIPVFSTFVRWMWYALLTFYVVLGVFDYAFQSHNTLKQQRMSKEDVKQEHKDM 180
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P K R++ + R + + ++ +++ NPTH A+ L Y E P ++ KG
Sbjct: 181 EGDPQTKKRRRELQREMQSGSLAQNVRQSAVVVRNPTHIAVCLGYDPVEMPVPTILEKGT 240
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+ A+ + +A +IP+ E +LAR LF V IP ++ VA L+ +
Sbjct: 241 DARAEHIVSLALRESIPVVENIALARQLFHDVKCGEMIPESQFEPVAALLRLV 293
>gi|313634400|gb|EFS00988.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL N1-067]
Length = 303
Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats.
Identities = 81/300 (27%), Positives = 157/300 (52%), Gaps = 5/300 (1%)
Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
I + LL +++ I + ++++P +++ ++FG+ +Y
Sbjct: 2 GGMFIKNTIQAFVALLKQPP-----NLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNY 56
Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
+Q + + VKP FKR++ KR++S+ LV +K+ + I L+ + I ++
Sbjct: 57 GVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHL 116
Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
T++ + N L F + V + + L IA + +LD + + + L+MSKQEIK
Sbjct: 117 QTLISYTGQNWLYSLKQIFSLFKNVXLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIK 176
Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
DE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP
Sbjct: 177 DEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPK 236
Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
L+AKG++ +A +R++A +P+ LARS++ + I YK V +++ ++
Sbjct: 237 LLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 296
>gi|213162120|ref|ZP_03347830.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 272
Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 121/263 (46%)
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
S + ++ ++ +GS +Q V+ + + ++ K+I+S++++V
Sbjct: 1 SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELC 60
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
KS +K+I++ I T + ++ + + ++ F + +L
Sbjct: 61 KSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGIL 120
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
D + Y++ LKMSK ++K E K G+P +K R++ + + ++ ++ ++
Sbjct: 121 DYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVV 180
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V
Sbjct: 181 RNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE 240
Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352
IP ++ VA L+ +
Sbjct: 241 RGDKIPETLFEPVAALLRMVMKI 263
>gi|27376933|ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
gi|12620529|gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum]
gi|27350075|dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
Length = 345
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 142/343 (41%), Gaps = 5/343 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ + K P+ KK+ DA +G + S + S A L + +
Sbjct: 2 SSTSEEKKLPPTPKKLRDARKKGQSARSSDLVSGVSACAGFGCLWWRAGAIEDKWQETVR 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L Q + + L L LS + + + + L + +
Sbjct: 62 --LVDKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFASEPL 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP +++ +G+KRI S + + K+ K++L+G I +++T ++ ++
Sbjct: 120 KPKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALVYLPVCGMGC 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
F V+ ++ + + D+ + ++M++ E K E K+ GNP +K
Sbjct: 180 -FGFVFTEVKLLIGIAAGAFLVGGLADLLIQRWLFMQDMRMTETEAKRENKEQQGNPQVK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ + + + SRAT+I+ P + LRY++ E PVLV +G+ A ++
Sbjct: 239 REHRRLRQESANEAPL-GISRATLILRGPAT-LIGLRYVRGETGVPVLVCRGEGEAASQL 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
A + I E+ LAR L + + + +P ++++VA+ +
Sbjct: 297 LGEARALRLNIVEDNVLARQLLGKARLGNPVPSQYFESVAKAL 339
>gi|28628135|gb|AAO34619.1| HrcU [Erwinia chrysanthemi]
Length = 347
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 143/326 (43%), Gaps = 8/326 (2%)
Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
+G S++ A L +L G+ + + + + L+ + +
Sbjct: 4 KKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSRISDPFGHAADEV--- 60
Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
+ + + + + + ++ + IQ P+ + +K F R++ IK+++++
Sbjct: 61 FSEALVLLATFCLLTISVALLMRVVGGWIQYGPLFAVEALKLDFNRLNPINQIKQMFTMR 120
Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
+ + + + +K + + + + +++ + ++ ++ V L +
Sbjct: 121 KITDMLTNLLKATTIWVVFWLVVIPQLEWLVELAYGDLNAFWKGVENVLKSVSCTTLSAL 180
Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH----KMM 259
L V D G + + + +M ++I++E K S G+P +K +KS+A+ + +
Sbjct: 181 LALGVFDFGLQKYYFLKQQRMIHEDIRNEYKNSEGDPHMKGHRKSVAQEILNEPASPRAK 240
Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
A +++ NPT YA+AL Y + P ++ KG++ AK + A++ +P+
Sbjct: 241 PKVEDADLLLVNPTDYAVALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIW 300
Query: 320 LARSLFKQVPINSAIPPVFYKAVAQL 345
LAR+L++ VP IP + VAQ+
Sbjct: 301 LARTLYR-VPEGHYIPRDTLQPVAQV 325
>gi|310767465|gb|ADP12415.1| surface presentation of antigens protein SpaS [Erwinia sp. Ejp617]
Length = 363
Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats.
Identities = 78/356 (21%), Positives = 150/356 (42%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK +D+ +G + ++ ++++ +LL+ S S
Sbjct: 1 MAQ------KTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFIS 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++D + + +L P + + + GI + L Q +
Sbjct: 53 YYSKVLLNENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ EGIK+I+S+ + F+KS +++ +T + L A
Sbjct: 107 QALKLNFKALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAG 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K + + + + + D Y LKM K E+K E K+S GNP
Sbjct: 167 IGQLIVSLLSLTVKAVTIFIAYSFFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ ++ + + + M A +++++ NPTH A+A+ + P + + N A
Sbjct: 227 QIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYHKKI 354
K A E IP+ L R L+K S I AV ++ + +I
Sbjct: 287 KAALLYAEEIGIPVVRNVLLTRRLYKSYVQYSFISINDDDLMAVMDILIWLRQVEI 342
>gi|153003614|ref|YP_001377939.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
gi|152027187|gb|ABS24955.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
Length = 343
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 73/347 (21%), Positives = 155/347 (44%), Gaps = 8/347 (2%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
++TE P+ K++ +A G+ RE +++ L+ L + S L L
Sbjct: 3 GDRTERPTPKRLREARRRGDVAQGRELGGAAALAGGLLALALTGPSMTRELASLLRAQL- 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
Q + + LL ++ RL + + + + +Q V + P
Sbjct: 62 ---QAAAQPSADPAALLHAALVTVGRLALAPASAALAAAVLAGALQTGFVFAPGALSPRA 118
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+RV+ G++R+ S + + + K ++ + + L ++ + ++
Sbjct: 119 ERVNPLRGLRRLLSPASALAVLLGLAKAAVLLGVAVVWLRSAAPSLAGLARLDARALW-G 177
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
+ + ++ ++ A L + D+ + + L+M++ E++ E K+ G+P + ++
Sbjct: 178 SLPMLGGLVARLVAAYALLALGDVALARFRHRRALRMTRDEVRREHKEDEGDPAHRAERR 237
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ R+ + SRAT+++ NPTH A+ALR+ + DAP +VAKG A ++R A
Sbjct: 238 RLHRALLEAGP---VSRATVVVVNPTHVAVALRHDRDGEDAPRVVAKGSGPAAARIRSAA 294
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
+PI + LAR+L + + IP Y+A A ++ +Y ++
Sbjct: 295 RRAGVPIVRDVPLARALHRLAEVGDEIPEELYEAAAAVLAHLYGLEV 341
>gi|256370976|ref|YP_003108800.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
gi|256007560|gb|ACU53127.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
Length = 390
Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 157/345 (45%), Gaps = 4/345 (1%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
TE P+ +K+E A EG S + F +L L + A
Sbjct: 4 QEGTEEPTPRKLERARKEGMVARSVDLVSFVVLLIASFALPLAVRDASVRIGDVAAA--A 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + FL T L L +LV P ++ ++ L Q ++P
Sbjct: 62 WSGAIPATSAGALRFLGTGLDL-VVQLVGPVAVVAVVIVAVGNLAQVGLRFVPKRLRPRA 120
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+ S ++RI+S + K+ VK++ + ++ + M +++P +
Sbjct: 121 ETFSPAANLRRIFSAQPGIEVAKAIVKLVATAAVAAAIVSSSIDAMAQ-GASSPLAAADA 179
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
A +++ ++ + L ++D+ +L+M++ E++DE+++ G+ +K R++
Sbjct: 180 AAGASLELVRVVAVLGVVLGIVDLVRQRRSLRRRLRMTRHEVRDELREHEGDLAVKARRR 239
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+AR +R M+ ++A +++ NPTH A+ALRY + AP +VAKG + +A +R+ A
Sbjct: 240 RLAREFVRRAMLADVAQADVVVVNPTHVAVALRYDPRRDRAPTVVAKGLDHLAMTIRERA 299
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+PI E+P LAR ++ + IP + VA+L+ +Y
Sbjct: 300 RAARVPIVEDPPLARVVYVASRVGEPIPASLFLVVARLLAFVYRL 344
>gi|332669212|ref|YP_004452220.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
gi|332338250|gb|AEE44833.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
Length = 400
Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 150/353 (42%), Gaps = 9/353 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE ++TE + +++ + +G S++ S + + A L +
Sbjct: 1 MSE---GGDRTEKATPQRMREIRRKGGLGRSQDLSAWVGLGAAAAVLPLVVDRARAAALD 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A D + +V +L + ++P + ++ + Q L
Sbjct: 58 QMAAFRDVAADP---DGTDVVQVLGDGLGTILTTLLPLFAVGVVAAVAVSAAQGGVHL-- 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ ++ + + R+ +K+ +K V ++ ++ +L
Sbjct: 113 HRLRLHADHLKPKGVASRLVGGQAWWQGIKTLLKTAAVALVLLAAVQAIAPALLASGRLP 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ A +L + L V D+ + + + +M+ +E+K+E K++ G+P
Sbjct: 173 LSHLIGIATDGTATLLRTGIAAGVLLAVADVVVVWRRNRKQTRMTLREVKEEHKRTEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
++K +S + R++MM + A +++ NPTH A+ALRY AP +VAKG +A
Sbjct: 233 MLKGAIRSKQLAMSRNRMMAEVANADVVLVNPTHVAVALRYEPGT-GAPRVVAKGAGAVA 291
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
K+R A + +P+ E+ LAR+L + IP + AVA+++ + +
Sbjct: 292 AKIRSAASDARVPMVEDVPLARALHAACELGQEIPAHLFTAVARVLAFVMALR 344
>gi|312958831|ref|ZP_07773350.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
gi|311286601|gb|EFQ65163.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
Length = 365
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 158/344 (45%), Gaps = 7/344 (2%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
K S+KK+ D +G S++ + A LF + + +
Sbjct: 2 SDSGEKKHLASAKKLRDQRKKGQVAQSQDVGKLLVLTAISEIALFTAETSLQRFQQLMVL 61
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+A TQ + + ++ + S + L++ + + + S +Q + +K
Sbjct: 62 PMARLTQPFVRTLEEVLLEGLLVFFSFALLMV---GVAITVKLISSWMQFGILFAPETLK 118
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
FKR++ +K+++S +L+N + S K L+G ++ + + + +++ +++ S
Sbjct: 119 LDFKRLNPLSQLKQMFSAQSLMNLLMSIAKAFLLGLVVYLVVWPSLGALINLATSDLQSY 178
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
+ R +L L + L ++D+ H + +++M++ E+ E K G+P +K
Sbjct: 179 VLALIALFRYLLHACLGLLLVLALIDLVLQKHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238
Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+++S+A + + + A +++ NPTH+A+AL Y + P+LV KG + A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAGAR 298
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
++ A ++P+ + LAR+L+ + IP +AVA +
Sbjct: 299 RLIARAKAADVPVIQCVWLARTLY-TKKRGANIPRETLQAVALI 341
>gi|326404521|ref|YP_004284603.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
AIU301]
gi|325051383|dbj|BAJ81721.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
AIU301]
Length = 324
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 79/319 (24%), Positives = 156/319 (48%), Gaps = 3/319 (0%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ +S+ L ++ + + L A ++ + + L +++
Sbjct: 1 MATLASLGVALAVMIGVLPSSAERLANTLASAFTRA--ATVDSGAGLSRALWQAGMASLG 58
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
+ IP + I L+Q N + +F R++ GI +++ NL +S +
Sbjct: 59 VFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSIL 118
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
K+ +G + + + + + + ++L F ++ +L ++ +D
Sbjct: 119 KLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVL 178
Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
+++ + +KMS+QE+KDE K++ G+P ++ R K+ + + + A +RA ++ITNPT
Sbjct: 179 VRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVITNPT 238
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
HYA+AL Y + +AP +VAKG + A ++R +A E IPI P LAR+LF+Q + +
Sbjct: 239 HYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DVETE 297
Query: 334 IPPVFYKAVAQLIYKIYHK 352
I P Y+AVA++I I+
Sbjct: 298 ILPEHYRAVAEIIAYIWKL 316
>gi|238793341|ref|ZP_04636967.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
ATCC 29909]
gi|238727310|gb|EEQ18838.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
ATCC 29909]
Length = 332
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 128/288 (44%), Gaps = 1/288 (0%)
Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQR 114
Y++ VL+ S+ + + ++ + + ++ ++ ++ I + + Q
Sbjct: 25 YTLVDQAIVLIRSSISQLQQPLAMALARIGAECMAVVIHIMGILGGALILVTILAGIAQV 84
Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
P+L V+ + ++ K+++S+ ++ KS +K+ ++ I L +
Sbjct: 85 GPLLATKAVEFKGEHINPINNAKQLFSLRSVFELTKSLLKVGVLTLIFGYLLLHYAVSFG 144
Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ + +L ++ +++D + + +LKMS +EIK E K
Sbjct: 145 YLAYCGSRCAIPVFATLMSWLLGALVACYVVFSLMDYAFQRYNTMKQLKMSLEEIKREHK 204
Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
S G+P IK +++ + + R+T ++ NPTH+A+ L Y + PV++ K
Sbjct: 205 DSNGDPHIKQKRRQLQHEEQSGSFAKNVRRSTAVVRNPTHFAVCLFYHADDAPLPVVIEK 264
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
G A + +A E IP+ E +LAR+L + V IP F++ V
Sbjct: 265 GHGEQAALIIALAEEQGIPVVENIALARALHRDVACGDTIPEQFFEPV 312
>gi|134282061|ref|ZP_01768767.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
gi|237508812|ref|ZP_04521527.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei MSHR346]
gi|254186853|ref|ZP_04893369.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|134246590|gb|EBA46678.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 305]
gi|157934537|gb|EDO90207.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pasteur 52237]
gi|235001017|gb|EEP50441.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei MSHR346]
Length = 411
Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|312172198|emb|CBX80455.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
ATCC BAA-2158]
Length = 363
Score = 218 bits (557), Expect = 8e-55, Method: Composition-based stats.
Identities = 72/356 (20%), Positives = 148/356 (41%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK +D+ +G++ ++ ++++ +LL
Sbjct: 1 MAQ------KTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLH--GMDFSRFID 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + D + + L P + + + G+ + L Q +
Sbjct: 53 CYTNILIDVSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ EG+KRI+S+ + F+KS +++ + + L A
Sbjct: 107 QALKLNFKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAG 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K + + + + + D Y LKM K E+K E K+S GNP
Sbjct: 167 IAQLIVSMLSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ ++ + + + M A ++++I+ NPTH A+A+ + P + + N A
Sbjct: 227 QIKSARRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYHKKI 354
+ + A + IP+ L R L+K +S I A+ ++ + +I
Sbjct: 287 RAVLVYAEKIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDLMAIMDILIWLRQVEI 342
>gi|292488070|ref|YP_003530947.1| surface presentation of antigens protein SpaS [Erwinia amylovora
CFBP1430]
gi|291553494|emb|CBA20539.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
CFBP1430]
Length = 363
Score = 218 bits (557), Expect = 8e-55, Method: Composition-based stats.
Identities = 72/356 (20%), Positives = 148/356 (41%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK +D+ +G++ ++ ++++ +LL
Sbjct: 1 MAQ------KTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLH--GMDFSRFID 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + D + + L P + + + G+ + L Q +
Sbjct: 53 CYTNILIDVSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIAT 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ EG+KRI+S+ + F+KS +++ + + L A
Sbjct: 107 QALKLNFKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAG 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K + + + + + D Y LKM K E+K E K+S GNP
Sbjct: 167 IAQLIVSMLSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK+ ++ + + + M A ++++I+ NPTH A+A+ + P + + N A
Sbjct: 227 QIKSARRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYHKKI 354
+ + A + IP+ L R L+K +S I A+ ++ + +I
Sbjct: 287 RAVLVYAEKIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDLMAIMDILIWLRQVEI 342
>gi|76818361|ref|YP_335733.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 1710b]
gi|254264647|ref|ZP_04955512.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
gi|123597194|sp|Q3JL20|BSAZ_BURP1 RecName: Full=Secretion apparatus protein BsaZ
gi|76582834|gb|ABA52308.1| surface presentation of antigens protein [Burkholderia pseudomallei
1710b]
gi|254215649|gb|EET05034.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1710a]
Length = 411
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|53716465|ref|YP_106123.1| surface presentation of antigens protein SpaS [Burkholderia mallei
ATCC 23344]
gi|67641434|ref|ZP_00440213.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
horse 4]
gi|124382305|ref|YP_001025867.1| surface presentation of antigens protein SpaS [Burkholderia mallei
NCTC 10229]
gi|126446476|ref|YP_001077952.1| surface presentation of antigens protein SpaS [Burkholderia mallei
NCTC 10247]
gi|167004213|ref|ZP_02269980.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
gi|254176483|ref|ZP_04883141.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
10399]
gi|254200989|ref|ZP_04907354.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
gi|254204953|ref|ZP_04911306.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
gi|254359072|ref|ZP_04975344.1| type III secretion system protein BsaZ [Burkholderia mallei
2002721280]
gi|81683780|sp|Q62B05|BSAZ_BURMA RecName: Full=Secretion apparatus protein BsaZ
gi|205831285|sp|A2S1P8|BSAZ_BURM9 RecName: Full=Secretion apparatus protein BsaZ
gi|206558177|sp|A3MCG6|BSAZ_BURM7 RecName: Full=Secretion apparatus protein BsaZ
gi|52422435|gb|AAU46005.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
23344]
gi|126239330|gb|ABO02442.1| type III secretion system protein BsaZ [Burkholderia mallei NCTC
10247]
gi|147748601|gb|EDK55676.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
gi|147754539|gb|EDK61603.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
gi|148028259|gb|EDK86219.1| type III secretion system protein BsaZ [Burkholderia mallei
2002721280]
gi|160697525|gb|EDP87495.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
10399]
gi|238522374|gb|EEP85819.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
horse 4]
gi|243060408|gb|EES42594.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
gi|261826738|gb|ABM99347.2| type III secretion system protein BsaZ [Burkholderia mallei NCTC
10229]
Length = 411
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQSNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|53722555|ref|YP_111540.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei K96243]
gi|167923333|ref|ZP_02510424.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei BCC215]
gi|217425128|ref|ZP_03456623.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
gi|226195957|ref|ZP_03791543.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
gi|254185170|ref|ZP_04891759.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
gi|254301459|ref|ZP_04968903.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|81606433|sp|Q63K32|BSAZ_BURPS RecName: Full=Secretion apparatus protein BsaZ
gi|52212969|emb|CAH39007.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|157811010|gb|EDO88180.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 406e]
gi|184215762|gb|EDU12743.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1655]
gi|217391733|gb|EEC31760.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 576]
gi|225931850|gb|EEH27851.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei Pakistan 9]
Length = 411
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|167907134|ref|ZP_02494339.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei NCTC 13177]
Length = 411
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|126443467|ref|YP_001063158.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 668]
gi|206558186|sp|A3NLD7|BSAZ_BURP6 RecName: Full=Secretion apparatus protein BsaZ
gi|126222958|gb|ABN86463.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 668]
Length = 406
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|126455636|ref|YP_001076109.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 1106a]
gi|167850199|ref|ZP_02475707.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei B7210]
gi|242313702|ref|ZP_04812719.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
gi|254193747|ref|ZP_04900179.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
gi|206558142|sp|A3P6Z9|BSAZ_BURP0 RecName: Full=Secretion apparatus protein BsaZ
gi|126229404|gb|ABN92817.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106a]
gi|169650498|gb|EDS83191.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei S13]
gi|242136941|gb|EES23344.1| type III secretion protein, YscU/HrpY family [Burkholderia
pseudomallei 1106b]
Length = 411
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|237678814|emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii]
Length = 345
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 72/346 (20%), Positives = 146/346 (42%), Gaps = 7/346 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS + K P+ KK+ DA +G + S + S A L L + I
Sbjct: 1 MSG--TSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAG-AIEDKWH 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L+ Q + + L L LS + + + + L ++ L
Sbjct: 58 ETVRLIDKL-QEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIAL 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP +++ +G+ RI S + + K+ VK++L+GT ++T ++ ++
Sbjct: 117 EPLKPKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCG 176
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
F V+ + + + D+ + +++M++ E K E K+ GNP
Sbjct: 177 MGC-FGLVFTEVKLLAGIAGGAFLVGGLTDLLIQRWLFLQEMRMTETEAKRENKEQQGNP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+K + + + + RA +I+T T + LRY++ E P+LV +G++ A
Sbjct: 236 QVKREHRRLRQESANEAPL-GVHRANLILTGSTT-LVGLRYVRGETGVPILVCRGESETA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
K+ A + + ++ LAR L + + +P +++AVA+ +
Sbjct: 294 SKLLGEARALGLKVVDDDVLARQLLGTAKLGNPVPSQYFEAVAKAL 339
>gi|188534034|ref|YP_001907831.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
Et1/99]
gi|188029076|emb|CAO96944.1| export protein for peptides using the type III secretion system
[Erwinia tasmaniensis Et1/99]
Length = 369
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 144/354 (40%), Gaps = 18/354 (5%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ KTE P+ KK +D+ +G ++ + +L+ +L +
Sbjct: 1 MAQ------KTELPTEKKRKDSARKGQTLKVKDFTTTVILLSGSYFLCY--GVNFDDFIF 52
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + ++ + ++ +LV P + + + GI + L+Q +
Sbjct: 53 FYTGVLNDSESLNIDGF------IMEMTSIFLKLVFPFIAICCLSGIAATLLQTRFNIAS 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K +FK ++ EG K+I+S+ L +KS + + L + +L +A
Sbjct: 107 EGLKLNFKALNPVEGFKKIFSLRTLKECVKSVCYLGVFICTCYSLLDSDLKNILAIRNAG 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
++ K + + + A + + Y LKM K E+K E K++ GNP
Sbjct: 167 IVQLIVSMLSLTVKAVTVFAAWGALVLCAEFIAEYFLHVKDLKMDKYEVKQERKETEGNP 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IKN ++ + + + A +++++ NPTH A+A+ + P + + N A
Sbjct: 227 QIKNARRRAHQEILSGEERAAIRNSSVVMANPTHIAVAIYFNPDVAPLPFIALRVTNFKA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYH 351
+ A + IP+ L R L++ +S I V +++ +
Sbjct: 287 RSAISYAEKIGIPVVRNIFLTRRLYRSYYQHSFISLNDRDL-MLVMEILIWLRQ 339
>gi|167743198|ref|ZP_02415972.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 14]
Length = 362
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRYAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|83716929|ref|YP_439036.1| surface presentation of antigens protein SpaS [Burkholderia
thailandensis E264]
gi|167615593|ref|ZP_02384228.1| surface presentation of antigens protein SpaS [Burkholderia
thailandensis Bt4]
gi|257142144|ref|ZP_05590406.1| surface presentation of antigens protein SpaS [Burkholderia
thailandensis E264]
gi|123539589|sp|Q2T713|BSAZ_BURTA RecName: Full=Secretion apparatus protein BsaZ
gi|83650754|gb|ABC34818.1| type III secretion system protein BsaZ [Burkholderia thailandensis
E264]
Length = 381
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 69/350 (19%), Positives = 148/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGAL-----SAPALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
A+ + L L R+ P +LL G L+Q L +
Sbjct: 50 VAAEFTRIASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S ++ + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + ++D Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVNQDDIDGVMRVLIWL 336
>gi|167915488|ref|ZP_02502579.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 112]
Length = 375
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|167820372|ref|ZP_02452052.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 91]
Length = 365
Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|167898806|ref|ZP_02486207.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 7894]
Length = 367
Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|167577442|ref|ZP_02370316.1| surface presentation of antigens protein SpaS [Burkholderia
thailandensis TXDOH]
Length = 381
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 69/350 (19%), Positives = 148/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGAL-----SAPALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
A+ + L L R+ P +LL G L+Q L +
Sbjct: 50 VAAEFTRIASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S ++ + +K+ + + + + + + + A
Sbjct: 107 ESIRIDLTALDPIKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + ++D Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVNQDDIDGVMRVLIWL 336
>gi|167828744|ref|ZP_02460215.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei 9]
Length = 358
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|167724223|ref|ZP_02407459.1| surface presentation of antigens protein SpaS [Burkholderia
pseudomallei DM98]
Length = 352
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 71/350 (20%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFVRIASTGAQLNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S + + +K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + +LD Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVSHDDIDGVMRVLIWL 336
>gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
Length = 539
Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
++KTE + K+++A +G S+E L ++L + + F I ++ + + L
Sbjct: 266 SEDKTEEATPHKLQEARKKGQVAKSKEVGLAFTLLMSTLVISFLGQYAIENLQNVMTAFL 325
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+L + ++ ++ + + ++ +++P ++ M+ GI + IQ + +KP
Sbjct: 326 KDFMGMEL-NYKNLFYISLTIVMRSALIILPLIIPIMIMGIFANFIQTGFIFTKETLKPD 384
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
K+++ G K+I+S LV +K + +VG + L +NY +L+ + +L
Sbjct: 385 IKKLNPVNGFKKIFSTRTLVELVKDLALVNVVGYVGYRFLKKNYIEILNLNNLRFPIMLK 444
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
K I L + + V D + ++ +KMSKQE+K+E KQ G+P IK +
Sbjct: 445 AFKGIAVKAFFNITLVMIFIAVGDFIFQKKKYKKDMKMSKQEVKEEFKQQEGDPQIKGKI 504
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
+ R +MM++ AT++ITNPTH A +L+
Sbjct: 505 RQKQREMAMRRMMQSVPDATVVITNPTHIASSLK 538
>gi|237800778|ref|ZP_04589239.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023636|gb|EGI03693.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 348
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 154/345 (44%), Gaps = 6/345 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ + K++ + KK+ DA +G S++ IL C + + + +
Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----RARAQVEA 58
Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNH 122
L+ A +E + + LL H + +P + + + I + ++ V ++
Sbjct: 59 LIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMKGVVFSVEP 118
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
V+P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++
Sbjct: 119 VQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVMLLGLAFYVVGRQALQALMESSRCGEG 178
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I
Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K ++ R +RA+++I + + + +RY++ E P++V + +
Sbjct: 239 KRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAV 298
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ A I ++ + +LA S+ K+ +P ++AVA +
Sbjct: 299 LLAEATPLGIAVWPDAALAESIAKRSVAGDPVPENTFQAVADALV 343
>gi|167573305|ref|ZP_02366179.1| surface presentation of antigens protein SpaS [Burkholderia
oklahomensis C6786]
Length = 374
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/350 (19%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G SR+ I + + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKSRDIVALVV-----IAAGASSAAAVVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +L+ + G L+Q L +
Sbjct: 50 VAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S ++ +K+ + + ++ + + + + A
Sbjct: 107 EAIRFDLTALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + ++D Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTIRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVNQDDIDGVMRVLIWL 336
>gi|167566195|ref|ZP_02359111.1| surface presentation of antigens protein SpaS [Burkholderia
oklahomensis EO147]
Length = 374
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/350 (19%), Positives = 149/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G SR+ I + + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKSRDIVALVV-----IAAGASSAAAVVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ A+ + F L L R+ P +L+ + G L+Q L +
Sbjct: 50 VAAEFVRIASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S ++ +K+ + + ++ + + + + A
Sbjct: 107 EAIRFDLTALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + + +++++ LL + ++D Y ++ +LKM K E+K E K+S GN
Sbjct: 167 PALLGHMWIVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A +P+ +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVPVVRNVALARSIYRNSPRRYSFVNQDDIDGVMRVLIWL 336
>gi|13475308|ref|NP_106872.1| translocation protein in type III secretion system, hrcU
[Mesorhizobium loti MAFF303099]
gi|14026059|dbj|BAB52658.1| translocation protein in type III secretion system; HrcU
[Mesorhizobium loti MAFF303099]
Length = 345
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 139/343 (40%), Gaps = 5/343 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D+ + KT A + KK+ DA +G P S + A L YL S L
Sbjct: 2 SDSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCREAL- 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L Q D + L+ L+ + + L + S L V +L +
Sbjct: 61 -LFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSLEPM 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P+F +++ +G+KR+ S ++V K+ K+ ++G + L + TM+
Sbjct: 120 TPNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPFCGMGC 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + ++ + + ++D+ + +++M+K E+ E+K G P +K
Sbjct: 180 L-GLVVTGAKLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAPELK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
+ ++ I + AT+I T + LRY++ E PVLV + A +
Sbjct: 239 SERRRIRDESADEPPL-GVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADGERASHL 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
A + I + LA L + + IP +++ VA+ +
Sbjct: 297 LSEARALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARAL 339
>gi|167915301|ref|ZP_02502392.1| type III secretion system protein [Burkholderia pseudomallei 112]
Length = 312
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 73/304 (24%), Positives = 145/304 (47%), Gaps = 3/304 (0%)
Query: 46 YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
L+ ++ + ++ LA + + + L A V+P L + +
Sbjct: 1 MLVAAADHFGDAMRALVNGALAFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALA 58
Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
GIG ++Q ++L V P+ ++ EG+K+++S + + +K VK ++V + +
Sbjct: 59 GIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKT 118
Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
+ + + + +P + + K L+++ + D+ + K+KM+
Sbjct: 119 IVWLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMT 178
Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
K E+K E K G+P++K +K +AR + A ++ NPTHYA+A+RY E
Sbjct: 179 KDEVKRESKNDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDE 238
Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
+ P +VAKG + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA +
Sbjct: 239 HPLPRVVAKGLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAI 297
Query: 346 IYKI 349
+ I
Sbjct: 298 LRWI 301
>gi|167820158|ref|ZP_02451838.1| type III secretion system protein [Burkholderia pseudomallei 91]
Length = 318
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)
Query: 57 SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
+ L+ A D + + L A V+P L + + GIG ++Q
Sbjct: 14 HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73
Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
++L V P+ ++ EG+K+++S + + +K VK ++V + ++ + +
Sbjct: 74 GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133
Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ +P + + K L+++ + D+ + K+KM+K E+K E K
Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193
Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
G+P++K +K +AR + A ++ NPTHYA+A+RY E+ P +VAK
Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAK 253
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
G + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307
>gi|167840165|ref|ZP_02466849.1| surface presentation of antigens protein SpaS [Burkholderia
thailandensis MSMB43]
Length = 366
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 69/350 (19%), Positives = 147/350 (42%), Gaps = 15/350 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E KTE P++KK+ DA +G +R+ I + +P + +T
Sbjct: 1 MAE------KTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALA-----APALVDLTR 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
A+ D F L L R+ P +LL G L+Q L +
Sbjct: 50 IAAEFARIASSGAQPDPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAV 106
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++ + +G+KR++S ++ + K+ + + + + + + + A
Sbjct: 107 ESIRFDLTALDPVKGMKRLFSWRSVKDAAKALLYVAVFAVTVRVFADLCHHDLFGLFRAR 166
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ + +++++ LL + ++D Y+ ++ +LKM K E+K E K+S GN
Sbjct: 167 AALLGHMWIVLTIRLVLLFLLCALPVLIVDAAVEYYLYHRELKMDKHEVKQEYKESEGNH 226
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
IK++++ I + + ++ ++ I+ NPTH A+ + P + + N A
Sbjct: 227 EIKSKRREIHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARA 286
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVP-INSAIPPVFYKAVAQLIYKI 349
+ + A + + +LARS+++ P S + V +++ +
Sbjct: 287 LAVIRHAEACGVTVVRNVALARSIYRNSPRRYSFVNQDDVDGVMRVLIWL 336
>gi|258611828|ref|ZP_05711674.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
R2-503]
gi|258606467|gb|EEW19075.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
R2-503]
Length = 300
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 75/274 (27%), Positives = 152/274 (55%)
Query: 77 ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
++++ + ++++P +++ ++FG+ +Y +Q + + VKP FKR++
Sbjct: 20 LANMESYSLFYLMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYF 79
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
KR++S+ +V +K+ + I L+ + I ++ T++ + N L F +
Sbjct: 80 KRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEF 139
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256
+ + L IA + +LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++
Sbjct: 140 LALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQG 199
Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
+ + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+
Sbjct: 200 SITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDEVPMIT 259
Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
LARS++ + I YK V +++ ++
Sbjct: 260 NRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 293
>gi|317012581|gb|ADU83189.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
Lithuania75]
Length = 302
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 1/279 (0%)
Query: 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE 134
+ L L+ L++P L++ ++ S ++Q + ++P F +++
Sbjct: 13 FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPKVIEPKFSKINPIN 72
Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
G+K ++S+ L++ +K+ L + + + N L
Sbjct: 73 GVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKSKALL 132
Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + +
Sbjct: 133 LISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNA 192
Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
+KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I
Sbjct: 193 TNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEI 251
Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +LAR L+K V +N+ IP ++AVA + ++ +
Sbjct: 252 IENKTLARELYKDVKLNATIPEELFEAVAIVFAQVAKLE 290
>gi|317009219|gb|ADU79799.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
Length = 302
Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 1/279 (0%)
Query: 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE 134
+ L L+ L++P L++ ++ S ++Q + ++P F +++
Sbjct: 13 FSKESVQELFNQLTKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPKVIEPKFSKINPIN 72
Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
G+K ++S+ L++ +K+ L + + + N L
Sbjct: 73 GVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKSKALL 132
Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + +
Sbjct: 133 LISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNA 192
Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
+KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I
Sbjct: 193 TNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEI 251
Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E +LAR L++ V +N+AIP ++AVA + ++ +
Sbjct: 252 IENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 290
>gi|213859844|ref|ZP_03385548.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 242
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 119/244 (48%), Gaps = 2/244 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L R + D + I+ + L +A ++P + ++ + S ++ + +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238
Query: 241 IIKN 244
+K
Sbjct: 239 HVKG 242
>gi|261885614|ref|ZP_06009653.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 266
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 63/271 (23%), Positives = 124/271 (45%), Gaps = 5/271 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ KTE P+ KK+EDA N+GN S++ S F ++L L+ + +
Sbjct: 1 MA---DDQEKTEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ + H L +++P + M+ GI S ++Q + +
Sbjct: 58 LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ P+F ++ +GI ++S+ L++ +K +K+ V + + + I +
Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L + + ++LL + + D+ +Q++ L+MSKQE+KDE KQ G+P
Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITN 271
+K R + + R +MM+ A ++ITN
Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITN 266
>gi|167724018|ref|ZP_02407254.1| type III secretion system protein [Burkholderia pseudomallei DM98]
Length = 318
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)
Query: 57 SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
+ L+ A D + + L A V+P L + + GIG ++Q
Sbjct: 14 HFGDAMRALVNGALAFVSADHSLIEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73
Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
++L V P+ ++ EG+K+++S + + +K VK ++V + ++ + +
Sbjct: 74 GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133
Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ +P + + K L+++ + D+ + K+KM+K E+K E K
Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193
Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
G+P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AK
Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAK 253
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
G + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307
>gi|167742987|ref|ZP_02415761.1| type III secretion system protein [Burkholderia pseudomallei 14]
gi|167828533|ref|ZP_02460004.1| type III secretion system protein [Burkholderia pseudomallei 9]
gi|167906942|ref|ZP_02494147.1| type III secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|167923134|ref|ZP_02510225.1| type III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 318
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)
Query: 57 SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
+ L+ A D + + L A V+P L + + GIG ++Q
Sbjct: 14 HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73
Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
++L V P+ ++ EG+K+++S + + +K VK ++V + ++ + +
Sbjct: 74 GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133
Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ +P + + K L+++ + D+ + K+KM+K E+K E K
Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193
Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
G+P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AK
Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAK 253
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
G + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I
Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307
>gi|115358968|ref|YP_776106.1| type III secretion exporter [Burkholderia ambifaria AMMD]
gi|115284256|gb|ABI89772.1| type III secretion exporter [Burkholderia ambifaria AMMD]
Length = 343
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ DA +G+ P S E + + + L + +
Sbjct: 1 MAEKDQ------KPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ +A + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ + + Y P ++A+G+ A
Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVAL--YYGGIGTLPWVLARGEGEAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA +L+ P I ++ VAQL+
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338
>gi|171322217|ref|ZP_02911064.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
gi|171092454|gb|EDT37799.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
Length = 343
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ DA +G+ P S E + + + L + +
Sbjct: 1 MAEKDQ------KPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ +A + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ + + Y P ++A+G+ A
Sbjct: 233 HIEAKRRQLAREAQFSSLPDRIGFASVVVYSSSVAVAL--YYGGVGTLPWVLARGEGEAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA +L+ P I ++ VAQL+
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338
>gi|330963711|gb|EGH63971.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 348
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 151/345 (43%), Gaps = 6/345 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ + K++ + KK+ DA +G S++ IL C + + + +
Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58
Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNH 122
L+ +E + + LL H + +P + + + I + ++ V ++
Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMRGVVFSVEP 118
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++
Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I
Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ A I + + SLA ++ ++ +P ++AVA +
Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343
>gi|313620092|gb|EFR91598.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378]
Length = 260
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 74/253 (29%), Positives = 142/253 (56%)
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
+++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ + I L
Sbjct: 1 VMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITL 60
Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
+ + I ++ T++ + N L F + + + L IA + +LD + +
Sbjct: 61 LSYVAYIGFRDHLDTLISYTGQNWLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYD 120
Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
+ L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++
Sbjct: 121 YKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISV 180
Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
+RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ + I
Sbjct: 181 VMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQED 240
Query: 338 FYKAVAQLIYKIY 350
YK V +++ ++
Sbjct: 241 LYKDVIEVMKELM 253
>gi|330876191|gb|EGH10340.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 348
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 66/345 (19%), Positives = 150/345 (43%), Gaps = 6/345 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ + K++ + KK+ DA +G S++ IL C + + + +
Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58
Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNH 122
L+ +E + + LL H + +P + + I + ++ V ++
Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAFTVGAVILTNIVTMRGVVFSVEP 118
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++
Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I
Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ A I + + SLA ++ ++ +P ++AVA +
Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343
>gi|71736693|ref|YP_274734.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71557246|gb|AAZ36457.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 348
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 70/349 (20%), Positives = 152/349 (43%), Gaps = 8/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + + K++ S KK+ DA +G S+E IL C + + +
Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLP----KARA 54
Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118
+ L+ +E + + LL H + +P + + + I + ++ V
Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
I + ++ ++ +L + +D+ + ++KMS E K E K G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P+IK ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ + A I + + SLA + ++ +P ++AVA +
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343
>gi|46203826|ref|ZP_00050927.2| COG1377: Flagellar biosynthesis pathway, component FlhB
[Magnetospirillum magnetotacticum MS-1]
Length = 196
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 113/193 (58%), Gaps = 1/193 (0%)
Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
+ L + F P + L K++ +L A + + D + H+W +
Sbjct: 1 MAGAILWHEHDRAESFAQLEPGAALQGTLSLALKMMGGMLAAYAGIALGDALYQRHRWRN 60
Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
+L+M+K+E+K E K+S G+P +K R + + +SR++ +MM A AT+++TNPTH+A+ALR
Sbjct: 61 RLRMTKEEMKQEHKESEGSPEVKARIRQLRQSRLKKRMMAAVPTATVVVTNPTHFAVALR 120
Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
Y APV VAKG + +A ++R +A EH++P+ E P LAR+L V +++ IP Y+
Sbjct: 121 YEAG-MAAPVCVAKGVDSLALRIRAVAAEHDVPVMENPPLARALHATVEVDAEIPAEHYR 179
Query: 341 AVAQLIYKIYHKK 353
AVA++I + +
Sbjct: 180 AVAEVIGFVLRLR 192
>gi|257487953|ref|ZP_05641994.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|320324520|gb|EFW80597.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328893|gb|EFW84892.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330985219|gb|EGH83322.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331008642|gb|EGH88698.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 348
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 152/349 (43%), Gaps = 8/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + + K++ S KK+ DA +G S++ IL C + + +
Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP----KARA 54
Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118
+ L+ +E + + LL H + +P + + + I + ++ V
Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
I + ++ ++ +L + +D+ + ++KMS E K E K G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P+IK ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ + A I + + SLA + ++ +P ++AVA +
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343
>gi|170702400|ref|ZP_02893289.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
gi|172063760|ref|YP_001811411.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
gi|170132694|gb|EDT01133.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
gi|171996277|gb|ACB67195.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
Length = 343
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D P++K++ +A +G+ P S E + + + L + +
Sbjct: 1 MAEKDQ------KPTAKRLREARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
++ +A + + + L+ + + L + ++ G+ + +Q V+
Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ +
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
I+ +++ +AR + + A++++ + + Y P ++A+G+ A
Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVAL--YYGGIGTLPWVLARGEGEAA 290
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+++ ++A + P LA +L+ P I ++ VAQL+
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338
>gi|298487107|ref|ZP_07005157.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298158350|gb|EFH99420.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 348
Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 152/349 (43%), Gaps = 8/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + + K++ S KK+ DA +G S++ IL C + + +
Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54
Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118
+ L+ +E + + LL H + +P + + + I + ++ V
Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVSAVILTNIVTMRGVVF 114
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
I + ++ ++ +L + +D+ + ++KMS E K E K G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P++K ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 235 DPMVKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ + A I + + SLA + ++ +P ++AVA +
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343
>gi|323152631|gb|EFZ38907.1| flagellar biosynthetic protein flhB [Escherichia coli EPECa14]
Length = 213
Score = 208 bits (531), Expect = 8e-52, Method: Composition-based stats.
Identities = 62/181 (34%), Positives = 110/181 (60%)
Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE
Sbjct: 1 MMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDE 60
Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +V
Sbjct: 61 FKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVV 120
Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
AKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++
Sbjct: 121 AKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 180
Query: 353 K 353
K
Sbjct: 181 K 181
>gi|227820507|ref|YP_002824478.1| translocation protein in type III secretion system, RhcU
[Sinorhizobium fredii NGR234]
gi|227339506|gb|ACP23725.1| translocation protein in type III secretion system, RhcU
[Sinorhizobium fredii NGR234]
Length = 345
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 70/349 (20%), Positives = 149/349 (42%), Gaps = 11/349 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + K+ S KKI DA +G S + +L ++L + S+
Sbjct: 1 MSE--TSEEKSLPASDKKIRDARRKGQVMHSPDMVSGIVVLFSTLFLFYVAP----SLQV 54
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRI-PVL 118
+ LL A+ + + + L+ ++ A V+P L + ++ + + + V
Sbjct: 55 KIERLLDEASHIYERPFADVWYRLSTIAADALWTTVLPILGITIVAILATNVAITKGFVF 114
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ + P F RV+ G+KRI S+ ++V+F K+ KI + + ++ +
Sbjct: 115 SAEPLAPDFNRVNPASGLKRIASLKSVVDFGKALFKIAALSIAFAVVFHAGLGSLFQSPT 174
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ + ++ + + + + +D+ + +++M++ E K E K + G
Sbjct: 175 CGFACLHATSLSMLKTITSIAIAAFVVMGAVDLFLQRWLFLREMRMTRSESKREHKDTEG 234
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P+I+ ++ +AR + A ++I ++ +RY++ E P++V +
Sbjct: 235 DPLIRQERRKLARLL--GTTKTGLAGAVLLIGEEGAVSVGIRYVRDETPVPIVVCRAFGP 292
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
A MR A IP + LA L + PI + +P ++ VA +
Sbjct: 293 AASSMRAQARSRTIPFMADAKLAAEL-GKTPIGAPVPDRLFQEVANALV 340
>gi|82940565|emb|CAJ44294.1| putative flagellar biosynthetic transmembrane protein FlhB
[Rhizobium leguminosarum bv. viciae]
Length = 213
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 98/203 (48%), Positives = 151/203 (74%)
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
F KS K+++VG I+ L YF +D + ++P +IL +RK++I++L+ A +
Sbjct: 1 FGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQTILVRMMAAMRKIIIVMLIATAIVA 60
Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
+ D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT+
Sbjct: 61 IADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATL 120
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F Q
Sbjct: 121 VIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQ 180
Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
V I+S IP VFYKAVA+LI+++Y
Sbjct: 181 VSIDSVIPSVFYKAVAELIHRVY 203
>gi|289624372|ref|ZP_06457326.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646629|ref|ZP_06477972.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868644|gb|EGH03353.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 348
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 152/349 (43%), Gaps = 8/349 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE + + K++ S KK+ DA +G S++ IL C + + +
Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54
Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118
+ L+ +E + + LL H + +P + + + I + ++ V
Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174
Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
I + ++ ++ +L + +D+ + ++KMS E K E K G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P+IK ++ R RA+++I + + + +RY++ E P++V + +
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLMIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ + A I + + SLA + ++ +P ++AVA +
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343
>gi|86157785|ref|YP_464570.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774296|gb|ABC81133.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
Length = 355
Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 7/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +N+TE S++++ A +EG P+ +A+L + + + L+ +
Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALTLVAQARGLGGGLAE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ S + + + +LS + G + L Q
Sbjct: 61 LMRHAAGSVDRAPFATLPALAARPAAAALSVCA-------AAALAGAAATLAQTRGGCWP 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P R+ + R S + L++ + K+ +G + + + + A
Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVGAIGAAAWSAARDGVARLPALLGAA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L F V +V + +LL A L + ++G + ++ K +M+K E K E+K+ G+P
Sbjct: 174 PGEQLALVFSLVARVALPVLLAAAALALAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ R++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A
Sbjct: 234 LVRGRRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344
>gi|330953285|gb|EGH53545.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 348
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 69/345 (20%), Positives = 154/345 (44%), Gaps = 6/345 (1%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ + K++ + KK+ DA +G S++ IL C + + + +
Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58
Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNH 122
L+ A +E + + LL H + +P + + + I + ++ V ++
Sbjct: 59 LIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVAAVILTNIVTMRGVVFSVEP 118
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++
Sbjct: 119 IQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I
Sbjct: 179 CIESSFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K ++ R +RA+++I + + + +RY++ E P++V + +
Sbjct: 239 KRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAA 298
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
+ A I ++ + SLA S+ K+ +P ++AVA +
Sbjct: 299 LLADAAPLGIALWPDASLAESIAKRSVAGDPVPENTFQAVADALV 343
>gi|292899281|ref|YP_003538650.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199129|emb|CBJ46243.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
Length = 365
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 67/340 (19%), Positives = 140/340 (41%), Gaps = 10/340 (2%)
Query: 17 KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED 76
KK +D+ +G++ ++ ++++ +LL +L + + D
Sbjct: 13 KKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLH--GMDFSRFIDCYTNILIDVSSVNIND 70
Query: 77 ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
+ + L P + + + G+ + L Q + +K +FK ++ EG+
Sbjct: 71 F------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFKALNPVEGL 124
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
KRI+S+ + F+KS +++ + + L A ++ K +
Sbjct: 125 KRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSMLSLTVKAV 184
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256
+ + + + D Y LKM K E+K E K+S GNP IK+ ++ + +
Sbjct: 185 TIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRRAHQELLSG 244
Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
+ M A ++++I+ NPTH A+A+ + P + + N A+ + A + IP+
Sbjct: 245 EEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAEKIGIPVVR 304
Query: 317 EPSLARSLFKQVPINSAIP--PVFYKAVAQLIYKIYHKKI 354
L R L+K +S I A+ ++ + +I
Sbjct: 305 NIFLTRRLYKSYVQHSFISLNDDDLMAIMDILIWLRQVEI 344
>gi|1648939|gb|AAB17687.1| putative [Sinorhizobium fredii]
Length = 351
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 73/343 (21%), Positives = 151/343 (44%), Gaps = 5/343 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D + K+ + KK+ DA G P S + ++ A L YL S L
Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYLWLRGSVIEDKCREAL- 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
LL Q +++ L+ + L+ + + LF + + L R V +L +
Sbjct: 61 -LLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSLEPM 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+
Sbjct: 120 KPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMVYLPVCGMGC 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
F ++++ + + ++D+ + +++M+K EIK E+K+ G P +K
Sbjct: 180 FGV-VFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTPELK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++ I + RAT++ T + LRY++ E P+LV + + A M
Sbjct: 239 GERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAASDM 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
+ A + I ++ LA L + +AIP +++ +A+ +
Sbjct: 297 FREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPIARAL 339
>gi|253990923|ref|YP_003042279.1| type III secretion system EscU protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782373|emb|CAQ85537.1| Putative type III secretion system EscU protein [Photorhabdus
asymbiotica]
Length = 346
Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 60/351 (17%), Positives = 149/351 (42%), Gaps = 13/351 (3%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
++ + K P++KK+ D +G P E + + + + F ++S +
Sbjct: 2 ESTEPKKYPPTAKKLRDLRKKGQFPK-TELAEPTFSIVLFFISISLFIVLLFSDFNYWVE 60
Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
+ A D + +S + +++ + +F I ++++ VLN +
Sbjct: 61 FIVYADLSSGFD---------AILVSLTVMMVFFAIAKFIFFIVNWVVINKVVLNTKGIG 111
Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
+ +++ G K + + N + ++++ + ++ + + S
Sbjct: 112 FNLDKINPVNGFKNTLGFDAITNSFRKVLELVFLIFLLKYVFDTYGVELNKLHKVSNPSF 171
Query: 185 LYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
+ + + ++++++ + +D + +++ K +M+ E+K+E+K + G+P+IK
Sbjct: 172 FVYDLVYYIGGASLLMVIYGICVGAVDFLFESYRFQKKNRMTMTEMKNEMKDTEGSPLIK 231
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++ R + M + R T + NPTH + + Y + AP++++ N +A
Sbjct: 232 MERRHKMRELMNEPMTKG-RRPTFALANPTHILVPICYEPEIDQAPIVLSIYTNDMALGK 290
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
R +PI E+ LAR + ++ I FY+ +A +I + KK
Sbjct: 291 RSYYESLGVPIIEDKPLARKILHKMKRGENYIDKEFYRDIALIIVALNRKK 341
>gi|293412209|ref|ZP_06654932.1| conserved hypothetical protein [Escherichia coli B354]
gi|291468980|gb|EFF11471.1| conserved hypothetical protein [Escherichia coli B354]
Length = 337
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 65/314 (20%), Positives = 139/314 (44%), Gaps = 11/314 (3%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L +YL + F ++ + S L +L + + D + + + +IP L
Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
L+ M I Q L +K F ++ G+KRI+ + + F+K+ + II
Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
I + + + + + + S+L + +++ L + + + D Y +
Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
+KM KQE+K E K+ GNP IK++++ + + ++ S + ++I NPTH A+ +
Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232
Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
+ + P++ + N +A +RK A E IPI + LAR ++ + +
Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYVS---F 289
Query: 340 KAVAQLIYKIYHKK 353
+ + +++ + +
Sbjct: 290 ENIDEILRLLLWLE 303
>gi|293406351|ref|ZP_06650277.1| antigen surface presentation protein SpaS [Escherichia coli
FVEC1412]
gi|291426357|gb|EFE99389.1| antigen surface presentation protein SpaS [Escherichia coli
FVEC1412]
Length = 337
Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 64/314 (20%), Positives = 139/314 (44%), Gaps = 11/314 (3%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L +YL + F ++ + S L +L + + D + + + +IP L
Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
L+ M I Q L +K F ++ G+KRI+ + + F+K+ + II
Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
I + + + + + + S+L + +++ L + + + D Y +
Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
+KM KQE+K E K+ G+P IK++++ + + ++ S + ++I NPTH A+ +
Sbjct: 173 KDMKMDKQEVKREYKEQEGSPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232
Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
+ + P++ + N +A +RK A E IPI + LAR ++ + +
Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYVS---F 289
Query: 340 KAVAQLIYKIYHKK 353
+ + +++ + +
Sbjct: 290 ENIDEILRLLLWLE 303
>gi|16520047|ref|NP_444167.1| innermembrane protein RhcU; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2494576|sp|P55723|Y4YO_RHISN RecName: Full=Probable translocation protein y4yO
gi|2182740|gb|AAB91954.1| innermembrane protein RhcU; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 345
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 72/339 (21%), Positives = 147/339 (43%), Gaps = 5/339 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D + K+ + KK+ DA G P S + ++ A L YL S L
Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLGYLWLRGSVIEDKCREAL- 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
LL Q +++ L+ + L+ + + LF + + L R V +L +
Sbjct: 61 -LLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSLEPM 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP+F +++ + +KR+ S + V K+ K++++G ++ + TM+
Sbjct: 120 KPNFDKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMVYLPVCGMGC 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
F ++++ + + ++D+ + +++M+K EIK E+K+ G P +K
Sbjct: 180 FGV-VFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTPELK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++ I + RAT++ T + LRY++ E P+LV + + A M
Sbjct: 239 GERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAASDM 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ A + I ++ LA L + +AIP +++ +
Sbjct: 297 FREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335
>gi|19749331|gb|AAL98701.1| Y4yO [Sinorhizobium fredii]
Length = 345
Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 72/339 (21%), Positives = 148/339 (43%), Gaps = 5/339 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D + K+ + KK+ DA G P S + ++ A L YL S L
Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYLWLRGSVIEDKCREAL- 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
LL Q +++ L+ + L+ + + LF + + L R V +L +
Sbjct: 61 -LLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSLEPM 119
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+
Sbjct: 120 KPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMVYLPVCGMGC 179
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
F ++++ + + ++D+ + +++M+K EIK E+K+ G P +K
Sbjct: 180 FGV-VFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTPELK 238
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
++ I + RAT++ T + LRY++ E P+LV + + A M
Sbjct: 239 GERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAASDM 296
Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
+ A + I ++ LA L + +AIP +++ +
Sbjct: 297 FREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335
>gi|197122901|ref|YP_002134852.1| type III secretion exporter [Anaeromyxobacter sp. K]
gi|196172750|gb|ACG73723.1| type III secretion exporter [Anaeromyxobacter sp. K]
Length = 355
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 81/351 (23%), Positives = 161/351 (45%), Gaps = 7/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +N+TE S++++ A +EG P+ +A+L + + + L ++
Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQAHALGGGLSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ AS + + + +L+ +
Sbjct: 61 LMRHAAASVDRTPFSSLPALALRPATAALAVCAAAALAGAAATLAQTRGG-------FWP 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P R+ + R S + L++ + K+ +G + + + + A
Sbjct: 114 RLAAPDPSRLLQAGRLLRPLSRDFLLDLALALAKVAALGAAAWTTARDGLARLPALLGAA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L F V +V + +LL A L ++G + ++ K +M+K E K E+K+ G+P
Sbjct: 174 PGEQLAVVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ +++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A
Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344
>gi|220917693|ref|YP_002492997.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955547|gb|ACL65931.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
Length = 355
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 165/351 (47%), Gaps = 7/351 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ + +N+TE S++++ A +EG P+ +A+L + + + L ++
Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQARALGGGLSE 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ AS + + + L + + + G + L Q
Sbjct: 61 LMRQAAASVDRTPFSSLPALA-------LRPASAALAVCAAAALAGAAATLAQTRGGFWP 113
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
P R+ + R S + L++ + K+ +G + + + + A
Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVAALGAAAWTAARDGLARLPALLGAA 173
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
P L F V +V + +LL A L ++G + ++ K +M+K E K E+K+ G+P
Sbjct: 174 PGEQLAMVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233
Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+++ +++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A
Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344
>gi|254691439|ref|ZP_05154693.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
870]
Length = 210
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/201 (42%), Positives = 134/201 (66%)
Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
F+KS K++ I+ + + D ++ +P ++ V ++L+ +L IA +
Sbjct: 1 EFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATDPGALPEFLRKNVVRLLVANVLAIAAI 60
Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R R R +M+ A AT
Sbjct: 61 AGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDRARRRMINAVPTAT 120
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+ LAR+L+K
Sbjct: 121 LIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFEDVQLARALYK 180
Query: 327 QVPINSAIPPVFYKAVAQLIY 347
QV ++ I P FYKAVA+LI
Sbjct: 181 QVNVDQMIAPEFYKAVAELIR 201
>gi|145298359|ref|YP_001141200.1| flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851131|gb|ABO89452.1| Flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 281
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 3/207 (1%)
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
+ VKI+ +G + + M + A ++Y + +LI++ + +
Sbjct: 52 LASAMVKILTIGFTLDRDQAFDPNAMGAMLPALLRELVYPLG--LLWMLIILCCALIPIV 109
Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
+D+ + +LKM+KQE+KDE K S G P +K R + + +MM +A +
Sbjct: 110 AIDVPFQTWNHTRQLKMTKQEVKDEFKDSEGKPEVKGRIRQLQMQMAMRRMMGDVPKADV 169
Query: 268 IITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
IITNPTHY++AL+Y AP +VAKG + IA K+R+IA E+ IPI P+L R++F
Sbjct: 170 IITNPTHYSVALKYDIAKPGAAPKVVAKGTDEIAMKIREIAREYEIPIMPSPALTRAIFH 229
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
I IP + AVAQ++ IY K
Sbjct: 230 STEIGHEIPEGLFAAVAQVLAYIYQLK 256
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D +TE P+ K+++ A +G S+E S++LA + LL ++
Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASALLAAVFGLLMVKESLASAMVK 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + + D + + +L L + +L ++ ++
Sbjct: 59 ILTIGF-TLDRDQAFDPNAMGAMLPALLRELVYPLGLLWMLIILCCALIPIVAIDVPFQT 117
Query: 121 NH 122
+
Sbjct: 118 WN 119
>gi|319795601|ref|YP_004157241.1| type III secretion exporter [Variovorax paradoxus EPS]
gi|315598064|gb|ADU39130.1| type III secretion exporter [Variovorax paradoxus EPS]
Length = 346
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 4/323 (1%)
Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
G S + + A ++ ++ IYS+ +L L A++T L+
Sbjct: 20 GEVAFSADVASTVG-FAAVLCAVWLGGHSIYSLLREL-WLHATSTSLLSRPDDRFGELVL 77
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
H + +P + + + GI L Q + + P R++ EG KRI+S +
Sbjct: 78 HTGEALLWGTVPIMGIAALAGIVGSLFQVGGMAAWGRLVPDMNRMNPAEGFKRIFSTRSA 137
Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
+N +K +K +L+G ++ + + T L A P IL V + LL A
Sbjct: 138 INLLKMVLKTVLLGALMFLVVRGYLDTALKLGYATPAGILAAGARMVLQAFGWALLVYAL 197
Query: 206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRA 265
+ +D +H++ + +MS ++I+ E K+S G+P+ + R++S + + + A
Sbjct: 198 MAAIDYAHEHHEFIKQQRMSFEDIRQEHKESDGDPLTQARRRSAHFEAVYASLADRVRAA 257
Query: 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
+ +I + A+AL+Y E D P ++A+G+ + ++R+ A E IP EPSLA L+
Sbjct: 258 SAVICS-ARVAVALQY-LGERDLPRVIARGEGEVGAQIRRFASEGLIPTEFEPSLAERLY 315
Query: 326 KQVPINSAIPPVFYKAVAQLIYK 348
+ VP + AIP Y VA+L+
Sbjct: 316 EDVPQDQAIPRSLYAPVARLLRW 338
>gi|304415257|ref|ZP_07395954.1| putative type III secretion system protein [Candidatus Regiella
insecticola LSR1]
gi|304282883|gb|EFL91349.1| putative type III secretion system protein [Candidatus Regiella
insecticola LSR1]
Length = 385
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 144/351 (41%), Gaps = 16/351 (4%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ KK++D+ +G + S++ + IL YL+ S + ++
Sbjct: 2 SSNKTEKPTQKKLKDSAKKGQSFKSKDFIIACLILCGAQYLISMGS--FVELMGAYRRVI 59
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+ + T + ++++P +LL + L+Q V+ +K +
Sbjct: 60 ANDFDYDIH------RYTTAVLWIGLQILLPIILLCVFASALPTLLQTGFVIATKALKFN 113
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ +G K+I+S+ + +KS + + + + + P+ +
Sbjct: 114 FGAINPAKGFKKIFSLRTAKDAVKSLLYLATFFISALLVWHNKKGLLFQQLHGTPYDMTV 173
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
++ ++ L+ I + +LD + + LKM KQE K E+K+ GNP IK+++
Sbjct: 174 VWGELLQAIIFTCLVCIIIILILDALAEFFLYIKDLKMDKQEFKREMKEQDGNPEIKSKR 233
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA----PVLVAKGQNLIAKK 302
+ + + ++ + II NPTH A+ + Y A P+ G +
Sbjct: 234 RELHSELLSEQIKSDVKNSNFIIANPTHIAVGIYYRPDPETASITIPLCF--GIGNQSAC 291
Query: 303 M--RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ + + ++ LAR + K S I + QL+ ++
Sbjct: 292 ISGKGVCQKNGCSYHPNVPLARRILKTHKRYSFISLDAIDEIIQLMIWLHQ 342
>gi|24251294|gb|AAN46413.1| HrcU [Xanthomonas oryzae pv. oryzae]
Length = 277
Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats.
Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 2/252 (0%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
+ KTE P+ KK+ DA +G P+S + + + + L+ + + + + +
Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
D + I L H+ + L++P L ++ G+ Q +L V P
Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239
Query: 247 KSIARSRIRHKM 258
K I + +
Sbjct: 240 KGIRQGTGLRRP 251
>gi|323975952|gb|EGB71046.1| FlhB HrpN YscU SpaS family protein [Escherichia coli TW10509]
Length = 233
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 60/203 (29%), Positives = 106/203 (52%)
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
K ++V ++ ISL N+ L + + V+ ++ ++D
Sbjct: 1 MTAKSVVVLVMLWISLRNNFAAFLGLQALPFKLAMNEGLSLYASVMRNFVILFIFFALID 60
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
+ + + LKM+KQE+K+E K G P +K R + + R ++ + +A ++IT
Sbjct: 61 VPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVIT 120
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NPTHYA+AL+Y Q+ AP +VAKG + IA +R++A E+ + + E P LARS++ +
Sbjct: 121 NPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQV 180
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
N IP Y+A+A ++ + K
Sbjct: 181 NQQIPFQLYRAIAHVLTYVLQMK 203
>gi|3603323|gb|AAC35808.1| hrp type III pathway protein [Pseudomonas syringae pv. glycinea]
Length = 325
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 60/308 (19%), Positives = 131/308 (42%), Gaps = 7/308 (2%)
Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
L + + + L + + + I + LS + + +L +
Sbjct: 8 LGLADDSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRL 64
Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
S +Q + +K +++ K+++S N++N + S +K + +G + + +
Sbjct: 65 VSNWMQIGFLFAPKALKLDINKINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVK 124
Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
++ +++ + + R +L +IL + + ++D + KL+MS +
Sbjct: 125 PALGALILLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 184
Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284
+IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y
Sbjct: 185 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPC 244
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
E P++ KG++ A + A IP+ L R+L++ + IP +AV
Sbjct: 245 ETPLPLIHCKGEDEEALALIARAKNAGIPVVHSIWLTRTLYR-AKVGKYIPRPTLQAVGH 303
Query: 345 LIYKIYHK 352
+ +
Sbjct: 304 IYKMVRQL 311
>gi|11276519|gb|AAG33887.1| HrcU [Pseudomonas syringae pv. tomato]
Length = 311
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 5/299 (1%)
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPV 117
+ L LLA + V L+ LS + L M+ + S +Q +
Sbjct: 1 MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL 60
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
+K K++ K+++S N++N + S +K + +G + + T++
Sbjct: 61 FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA 120
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+++ + L+ + VL +IL + + ++D + KL+MS ++IK E KQS
Sbjct: 121 NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE 180
Query: 238 GNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
G+P +K ++ +A + + A A +++ NPTHYA+AL Y E P++ K
Sbjct: 181 GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK 240
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
G++ A + A + IP+ + LAR+L+K V + IP AV + + +
Sbjct: 241 GEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 298
>gi|12083752|dbj|BAB20911.1| putative HrpN [Acidovorax avenae subsp. avenae]
Length = 214
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 1/203 (0%)
Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
F KS +K ++ G ++ +T ++ + P + A+ + K+ L +
Sbjct: 1 EFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIAWSALLKLFSFAFLVFLVI 60
Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
LD G + + +MSK ++K E K S G+P +K KS+ E AT
Sbjct: 61 GPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKSLREEMATSPPQERVPGAT 120
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+++TNPTHYA+ALRY P++VAKG + A +R +A H+IP+ P LAR+L K
Sbjct: 121 VVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHK 180
Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349
+P++ IP ++AV+ ++ +
Sbjct: 181 -LPLDQPIPEELFEAVSVVLRWV 202
>gi|330862333|emb|CBX72493.1| hypothetical protein YEW_GP28240 [Yersinia enterocolitica W22703]
Length = 225
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 103/196 (52%)
Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
+ + + + + +L + + F +L+ + I +DI S +
Sbjct: 1 MLYTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYHGILVYFIAIIVIFAAIDIPLSNYL 60
Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
+ K+KM+KQE+K E K + GNP IK R + + R ++ + A +IITNPTH+++
Sbjct: 61 FTKKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQFAMGQINKTVPNADVIITNPTHFSV 120
Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
AL+Y + AP ++AKG++ IA +R +A ++I I E P LAR+++ +N +P
Sbjct: 121 ALKYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQ 180
Query: 338 FYKAVAQLIYKIYHKK 353
Y+A AQ++ + K
Sbjct: 181 LYRATAQVLTYVMQVK 196
>gi|262274307|ref|ZP_06052118.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
CIP 101886]
gi|262220870|gb|EEY72184.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
CIP 101886]
Length = 344
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 62/351 (17%), Positives = 144/351 (41%), Gaps = 13/351 (3%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
++ + K P+ KK+ D +G P E + + L ++ ++ +S+
Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPK-TELAEPTLELVVFTVIIILALYYLFEYSSEWF 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ A + D + V L+ +LV+ +++ V++ +
Sbjct: 61 SAILQADVQVGLDSGYDVLWWCIGGLALLKLVMAAF---------EWVMINKAVVSTEAL 111
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182
+++ G K I+ I + ++ ++++ + ++ + N
Sbjct: 112 GLKMDKINPVNGAKNIFGIEAISRSLRKILELLFLLFLLKYVADVLGSKLYQLHEINNYP 171
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+Y+ ++ + L+F + +D + + K +M+ E+K+E+K++ G+P I
Sbjct: 172 YFIYYLMLSILAASVFYLIFGVCVGTVDFMAEKYHFMQKNRMTFTEMKNELKETEGSPEI 231
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K +K R + + + R + NPTH + + Y PV++ +A +
Sbjct: 232 KYERKRRMREVMETPITQG-RRPNFALANPTHILVPICYDPKIERVPVVLKICTESLALE 290
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHK 352
R +IPI E LAR+++ ++ +PP F++ VA +I ++ K
Sbjct: 291 ERSRLETMDIPIIENVPLARAIYTKMKQGEDFLPPEFFRDVAIIISRLKRK 341
>gi|262360426|gb|ACY57147.1| type III secretion apparatus protein [Yersinia pestis D106004]
Length = 215
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 92/204 (45%)
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
MKS +K+ ++ I L + + L + +L ++ ++
Sbjct: 1 MKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSL 60
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
+D + + +LKMS E+K E K S G+P IK +++ + R+T +
Sbjct: 61 MDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTAV 120
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ NPTH+A+ L Y E P+++ KG + A + +A + IP+ E +LAR+L + V
Sbjct: 121 VRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV 180
Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
IP F++ VA L+
Sbjct: 181 ACGDTIPEQFFEPVAALLRMALEL 204
>gi|226327763|ref|ZP_03803281.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
gi|225203467|gb|EEG85821.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
Length = 139
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
M++QEIKDE KQ G+P +K R + + R +MM A +I+TNPTHYA+AL+Y
Sbjct: 1 MTRQEIKDEFKQQEGDPQLKARIRQQQHAMSRRRMMADVPNADVIVTNPTHYAVALQYN- 59
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
+ AP ++AKG IA K+++I E+ IP+ E P LAR+L++ I AIP Y AVA
Sbjct: 60 DKMTAPKVLAKGAGAIALKIKEIGAENRIPLLEAPPLARALYRHSEIGHAIPSTLYAAVA 119
Query: 344 QLIYKIYHKK 353
+++ +Y K
Sbjct: 120 EVLAWVYQLK 129
>gi|229515162|ref|ZP_04404622.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
gi|254285284|ref|ZP_04960249.1| VcsU2 [Vibrio cholerae AM-19226]
gi|71480619|gb|AAZ32241.1| VcsU2 [Vibrio cholerae non-O1/non-O139]
gi|150424556|gb|EDN16492.1| VcsU2 [Vibrio cholerae AM-19226]
gi|229347867|gb|EEO12826.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
Length = 350
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 146/358 (40%), Gaps = 25/358 (6%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
++ + K P+ KK+ D +G P + E +F+ I+ + L + F
Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIII--IFTLYYLFEYSGEW 59
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+++ L+ + ++ + LL ++ I +++ V
Sbjct: 60 LSAVLYADIDVGLATGVD--------------VLWWCIGGLALLKLVMAIFEWVMINKAV 105
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++ + +++ G K I+ + + + ++++ + ++ +
Sbjct: 106 ISTEALGLKMDKINPVNGAKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYQLN 165
Query: 178 SAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
N +Y+ +++ L++ + +D + + K +M+ E+K+E+K++
Sbjct: 166 EINNYPYFIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNELKET 225
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK +K R + + + R T + NPTH + + Y PV++
Sbjct: 226 EGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVLKICT 284
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK +IPI E LAR+++ ++ +P F++ VA +I + +K
Sbjct: 285 ESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKRQK 342
>gi|229529200|ref|ZP_04418590.1| Type III secretion inner membrane protein [Vibrio cholerae
12129(1)]
gi|229332974|gb|EEN98460.1| Type III secretion inner membrane protein [Vibrio cholerae
12129(1)]
Length = 350
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 146/358 (40%), Gaps = 25/358 (6%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
++ + K P+ KK+ D +G P + E +F+ I+ + L + F
Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIII--IFTLYYLFEYSGEW 59
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+++ L+ + ++ + LL ++ I +++ V
Sbjct: 60 LSAVLYADIDVGLATGVD--------------VLWWCIGGLALLKLVMAIFEWVMINKAV 105
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++ + +++ G K I+ + + + ++++ + ++ +
Sbjct: 106 ISTEALGLKMDKINPVNGAKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYQLN 165
Query: 178 SAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
N +Y+ ++V L++ + +D + + K +M+ E+K+E+K++
Sbjct: 166 EINNYPYFIYYLMYSVGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNELKET 225
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK +K R + + + R T + NPTH + + Y PV++
Sbjct: 226 EGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVLKICT 284
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK +IPI E LAR+++ ++ +P F++ VA +I + +K
Sbjct: 285 ESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKRQK 342
>gi|321472934|gb|EFX83903.1| hypothetical protein DAPPUDRAFT_315303 [Daphnia pulex]
Length = 217
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 1/209 (0%)
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
+V F+K F K++++ TI + F F S P I+ A + ++L+ ++ +
Sbjct: 1 MVEFLKGFGKLVIILTIAFFIFGKTNFPFQPFGSLAPQVIMPEASRLILQILLSLIAAMG 60
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA-TS 263
L LD G+ + + + +L MS+QE+KDE K + + +RQ+ + + + + +
Sbjct: 61 VLAALDYGYQWFRVFRELYMSRQELKDEHKDLEKDASVISRQRQMQKELAQMRSLGDKIP 120
Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
+AT++ITNPTHYA+ALR+ E AP ++AKG + +A+++R++A H +P+ E P LA++
Sbjct: 121 KATVVITNPTHYAVALRWNPREMSAPQVIAKGTDRVAQRIRELAQHHFVPLVENPPLAQA 180
Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
L+K V I I P Y+AV+++I +
Sbjct: 181 LYKSVKIGQEISPEHYRAVSEVIRYVLRI 209
>gi|154175036|ref|YP_001408825.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
525.92]
gi|112803672|gb|EAU01016.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
525.92]
Length = 139
Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 89/127 (70%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MSKQE+KDE KQ G+P +K R + + + +MM+ +A ++ITNPTHYA+A+RY +
Sbjct: 1 MSKQEVKDEYKQMEGDPQVKGRIRRMQMQAAKRRMMQNVPQADVVITNPTHYAVAVRYDK 60
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
+++ APV++AKG +++A ++RKIA EH + I+E P LAR L++ + IP ++AVA
Sbjct: 61 SKDSAPVILAKGVDMMALQIRKIALEHGVQIYENPPLARELYRVCEVEDTIPAELFRAVA 120
Query: 344 QLIYKIY 350
+++ +Y
Sbjct: 121 EVLSFVY 127
>gi|304412856|ref|ZP_07394454.1| type III secretion exporter [Shewanella baltica OS183]
gi|307306020|ref|ZP_07585765.1| type III secretion exporter [Shewanella baltica BA175]
gi|304348773|gb|EFM13193.1| type III secretion exporter [Shewanella baltica OS183]
gi|306910893|gb|EFN41320.1| type III secretion exporter [Shewanella baltica BA175]
Length = 348
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 142/354 (40%), Gaps = 26/354 (7%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPIS------REASLFSSILACLIYLLFFFSPG 54
MS N++ + K P+ KK+ + +G P + E +F+ I IY +F S
Sbjct: 1 MS-NESTEPKKYPPTEKKLRELRKKGQFPKTELAEPTMELVVFAVIFIGTIYFVFDSSND 59
Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
+ V + I L + + + L++ + S+++
Sbjct: 60 WFEVMLY----------------ADISTGLDIIYTVIAWGIFILLMIKLAMAAISWVMLN 103
Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
V+N + +++S G K I+ I + ++ +++I + ++ +
Sbjct: 104 KSVINTESLGLKMEKISPVTGAKNIFGIEAISRSLRKVLELIFLLFLLKYVFDIGGAELT 163
Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIAT-LTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
N + ++ ++ L +D + + K +M+ E+K+E+
Sbjct: 164 RLAQINNVPYFIYNLMLYVGLVSLLFFVYGVSLGCVDFMAESYHFNHKNRMTFTEMKNEM 223
Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
K++ G+P +K+ +K R + M + T I NPTH + + Y + + PV++
Sbjct: 224 KETEGSPEMKSERKRQMREVMDAPMTKG-RTPTFAIANPTHILVPICYDRMIDKVPVVLK 282
Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLI 346
A R+ NIPI E LAR+ +K + IP FY+ +A ++
Sbjct: 283 ITTESFALDERRRLEALNIPILEHIGLARAFYKSMRTGEDYIPKEFYRHIAFIL 336
>gi|153846242|ref|ZP_01993844.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
gi|149744950|gb|EDM56290.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
AQ3810]
Length = 150
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 79/125 (63%)
Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
+KDE K++ G P +K R + + R + +MM +A +I+TNP HY++ALRY Q + A
Sbjct: 1 VKDEYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRA 60
Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
PV++AKG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++
Sbjct: 61 PVVIAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAF 120
Query: 349 IYHKK 353
++ K
Sbjct: 121 VFQLK 125
>gi|254224928|ref|ZP_04918543.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
gi|125622616|gb|EAZ50935.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
Length = 350
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 146/358 (40%), Gaps = 25/358 (6%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
++ + K P+ KK+ D +G P + E +F+ I+ + L + F
Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIII--IFTLYYLFEYSGEW 59
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+++ L+ + I L + LL ++ I +++ V
Sbjct: 60 LSAVLY--------------ADIYVGLATGVDVLWWCIGGLALLKLVMVIFEWVMINKAV 105
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++ + +++ G K I+ + + + ++++ + ++ +
Sbjct: 106 ISTEALGLKMDKINPVNGAKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYQLN 165
Query: 178 SAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
N +Y+ +++ L++ + +D + + K +M+ E+K+E+K++
Sbjct: 166 EINNYPYFIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNELKET 225
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK +K R + + + R T + NPTH + + Y PV++
Sbjct: 226 EGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVLKICT 284
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK +IPI E LAR+++ ++ +P F++ +A +I + +K
Sbjct: 285 ESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDIAVIISNLKRQK 342
>gi|153836050|ref|ZP_01988717.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
gi|149750804|gb|EDM61549.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
Length = 351
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 141/356 (39%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + + K P+ KK+ D +G P E + + +
Sbjct: 1 MAEE-STEPKKYPPTEKKLRDLRQKGQFPK-TELAEPT----------LELIVFTIIIIF 48
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
L+ L + + + + + + + GL L ++ I +++ V++
Sbjct: 49 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAIFEWVMINKAVIS 108
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ +++ G K I+ + + + ++++ + ++ +
Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYLLNEI 168
Query: 180 N-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
N +Y+ +++ + L++ + +D + + K +M+ E+K+E+K++ G
Sbjct: 169 NNYPYFIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNELKETEG 228
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK+ +K R + + + T + NPTH + + Y PV++
Sbjct: 229 SPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVLKICTES 287
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK IPI E LAR+++ ++ +P F+ VA +I + K
Sbjct: 288 LALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISYLKRLK 343
>gi|260362767|ref|ZP_05775636.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
gi|260880055|ref|ZP_05892410.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
gi|260895172|ref|ZP_05903668.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
gi|308085801|gb|EFO35496.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
gi|308091813|gb|EFO41508.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
gi|308112085|gb|EFO49625.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
Length = 351
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 59/356 (16%), Positives = 141/356 (39%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + + K P+ KK+ D +G P E + + +
Sbjct: 1 MAEE-STEPKKYPPTEKKLRDLRQKGQFPK-TELAEPT----------LELIVFTIIIIF 48
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
L+ L + + + + + + + GL L ++ + +++ V++
Sbjct: 49 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 108
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ +++ G K I+ + + + ++++ + ++ +
Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYLLNEI 168
Query: 180 N-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
N +Y+ +++ + L++ + +D + + K +M+ E+K+E+K++ G
Sbjct: 169 NNYPYFIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNELKETEG 228
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK+ +K R + + + T + NPTH + + Y PV++
Sbjct: 229 SPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVLKICTES 287
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK IPI E LAR+++ ++ +P F+ VA +I + K
Sbjct: 288 LALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISYLKRLK 343
>gi|153215439|ref|ZP_01950023.1| VcsU2 [Vibrio cholerae 1587]
gi|153827954|ref|ZP_01980621.1| VcsU2 [Vibrio cholerae 623-39]
gi|124114733|gb|EAY33553.1| VcsU2 [Vibrio cholerae 1587]
gi|148876535|gb|EDL74670.1| VcsU2 [Vibrio cholerae 623-39]
Length = 346
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 146/358 (40%), Gaps = 27/358 (7%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYSV 58
++ + K P+ KK+ D +G P + E +F I+
Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFIFCIIIVIT-------------- 47
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPV 117
L L A + I + + S I L+ F ++ + +++ V
Sbjct: 48 ---LFNLFEYANEWITSAIQSDINVGIDNMFSILGYAIGFLMFFKIVMAVFEWVMINKSV 104
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++ + +++ G K I+ I + + ++++ + ++ +
Sbjct: 105 ISTEALGFKIDKINPVNGAKNIFGIEAISRSSRKVLELLFLLFLLKYVFDVLGSELYKLN 164
Query: 178 SAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
N +Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+K++
Sbjct: 165 EINNYPYFIYYLLYSIGAVSLFYLVYGVCIGSVDYLAEKYHFHQKNRMTFTEMKNELKET 224
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P IK ++ R ++ + + + T + NPTH + + Y PV++
Sbjct: 225 EGSPEIKYERRRRMREVMKTPVKKG-RKPTFALANPTHILVPIYYDPKVEKIPVVLKIST 283
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A RK E IPI E LARSL++++ +P FY+ VA +I + +K
Sbjct: 284 ESLALAERKRLEEQGIPIIENIPLARSLYRKMKSGEDFLPKEFYRDVAVIISTLNRQK 341
>gi|28901209|ref|NP_800864.1| putative type III secretion system EscU protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|28809722|dbj|BAC62697.1| putative type III secretion system EscU protein [Vibrio
parahaemolyticus RIMD 2210633]
Length = 352
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 59/356 (16%), Positives = 141/356 (39%), Gaps = 16/356 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + + K P+ KK+ D +G P E + + +
Sbjct: 2 MAEE-STEPKKYPPTEKKLRDLRQKGQFPK-TELAEPT----------LELIVFTIIIIF 49
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
L+ L + + + + + + + GL L ++ + +++ V++
Sbjct: 50 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 109
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ +++ G K I+ + + + ++++ + ++ +
Sbjct: 110 TESLGLKMDKINPVNGTKNIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYLLNEI 169
Query: 180 -NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
N +Y+ +++ + L++ + +D + + K +M+ E+K+E+K++ G
Sbjct: 170 NNYPYFIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNELKETEG 229
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
+P IK+ +K R + + + T + NPTH + + Y PV++
Sbjct: 230 SPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVLKICTES 288
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A + RK IPI E LAR+++ ++ +P F+ VA +I + K
Sbjct: 289 LALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISYLKRLK 344
>gi|221271473|dbj|BAH15025.1| putative type III secretion system apparatus protein VscU2 [Vibrio
parahaemolyticus]
gi|328469635|gb|EGF40571.1| putative type III secretion system EscU protein [Vibrio
parahaemolyticus 10329]
Length = 346
Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 65/357 (18%), Positives = 146/357 (40%), Gaps = 25/357 (7%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYSV 58
++ + K P+ KK+ D +G P + E +F I+ + +S+
Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVITL----------HSL 51
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+ ++SA Q + +F + ++ + +F I +I
Sbjct: 52 FEYTNEWISSAIQSDINVGIDNMFSILGYTIGFLAFFKIVMAVFEWVMINKSVI------ 105
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ + +++ G K I+ + + + ++++ + ++ +
Sbjct: 106 STEALGFKIDKINPVNGAKNIFGVEAISRSSRKVLELLFLLFLLKYVFDVLGAELYKLNE 165
Query: 179 AN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
N +Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+K++
Sbjct: 166 INNYPYFIYYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETE 225
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+P IK ++ R + + + + T + NPTH + + Y PV++
Sbjct: 226 GSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTE 284
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A RK E IPI E LARSL++ + +P FY+ VA +I + +K
Sbjct: 285 SLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341
>gi|260757056|ref|ZP_05869404.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
870]
gi|260677164|gb|EEX63985.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
870]
Length = 165
Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 116/156 (74%)
Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+ ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R
Sbjct: 1 MVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGR 60
Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+
Sbjct: 61 DRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHS 120
Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 121 IPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIR 156
>gi|85060041|ref|YP_455743.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
str. 'morsitans']
gi|84780561|dbj|BAE75338.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
str. 'morsitans']
Length = 245
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 2/247 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D K+EAP+ + E A EG P SRE + +L L + + +
Sbjct: 1 MAE-DIDLEKSEAPTQHRQEKAREEGQIPRSRELTSMLMLLVGCAMLWLDGAYLARQLAA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + + L +I ++ +G+ ++ N
Sbjct: 60 MLAQGL-HFDHGLIGKDRQSLTAAAPLLSQTVLALISLFAGLILVALGAPMLLGGITFNP 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +K K+V+ G+KR++S L K+ +K ++ G + L N+ ML +
Sbjct: 119 SLIKFDIKKVNPLSGLKRMFSSQVLAELFKAILKAVVFGCVTGSFLWHNWPRMLHLVMEP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L A + + ++ I++ ++ + D+ W KL+M +Q+I+DE K G+P
Sbjct: 179 AVPALGDAMWIITACMLFIIVGLSPIVGFDVFWQLWSHLKKLRMIRQDIRDEFKNQEGDP 238
Query: 241 IIKNRQK 247
+KNR +
Sbjct: 239 HVKNRIR 245
>gi|260899851|ref|ZP_05908246.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
gi|308107387|gb|EFO44927.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
Length = 346
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/357 (18%), Positives = 145/357 (40%), Gaps = 25/357 (7%)
Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYSV 58
++ + K P+ KK+ D +G P + E +F I+ + +S+
Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVITL----------HSL 51
Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
+ ++SA Q + +F + ++ + +F I +I
Sbjct: 52 LEYTNEWISSAIQSDINVGIDNMFSILGYTIGFLAFFKIVMAVFEWVMINKSVI------ 105
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ + +++ G K I+ + + + ++++ + ++ +
Sbjct: 106 STEDLGFKIDKINPVNGAKNIFGVEAISRSSRKVLELLFLLFLLKYVFDVLGAKLYKLNE 165
Query: 179 AN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
N +Y+ ++ V + L++ + +D + ++ K +M+ E+K+E+K++
Sbjct: 166 INNYPYFIYYLLNSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETE 225
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+P IK ++ R + + + + T + NPTH + + Y PV++
Sbjct: 226 GSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTE 284
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
+A RK E IPI E LARSL++ + +P FY+ VA +I + +K
Sbjct: 285 SLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341
>gi|270487694|ref|ZP_06204768.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
D27]
gi|270336198|gb|EFA46975.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
D27]
Length = 161
Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 83/132 (62%)
Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
+KM+KQE+K E K + GNP IK+R + + R ++ + A +IITNPTH+++AL+Y
Sbjct: 1 MKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKY 60
Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
+ AP +VAKG++ IA +R IA +H I I E P LAR+++ +N IP Y+A
Sbjct: 61 APEKASAPYIVAKGKDDIALYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRA 120
Query: 342 VAQLIYKIYHKK 353
+AQ++ + K
Sbjct: 121 IAQVLTYVMQIK 132
>gi|115379113|ref|ZP_01466237.1| translocation protein in type III secretion [Stigmatella aurantiaca
DW4/3-1]
gi|115363896|gb|EAU63007.1| translocation protein in type III secretion [Stigmatella aurantiaca
DW4/3-1]
Length = 265
Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 1/257 (0%)
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
L P L ++ + L LN+ HV P+ +R+S G KR+ S+ V +K
Sbjct: 1 MLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLERISPFAGWKRLLSVRAGVEGLK 60
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
+ + ++ ++ + E L + L H + +L+ + + L D
Sbjct: 61 ALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHLLDRLEPLLLRLSGCLLLLGGAD 120
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
+ + + L MS++E+K E ++S G+P K ++K++ R + +A+ ++
Sbjct: 121 YALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKALHRQLAQGGSARGVRKASAVVI 180
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NPTH A+ALRY E +AP LVAK Q A +R A IP+ + LARSL +
Sbjct: 181 NPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQRRGIPVVRDVPLARSLI-SYDV 239
Query: 331 NSAIPPVFYKAVAQLIY 347
IP Y+A A ++
Sbjct: 240 GEQIPEELYQAAAAVLR 256
>gi|229138469|ref|ZP_04267058.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
gi|228645006|gb|EEL01249.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
Length = 259
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 125/268 (46%), Gaps = 18/268 (6%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVSVLFDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N T++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDP 231
Query: 241 IIKNRQK---------SIARSRIRHKMM 259
+K ++K + R + +++
Sbjct: 232 QVKGKRKTLCTPYCKGQLRRRWMAQRLL 259
>gi|228900351|ref|ZP_04064580.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
gi|228859238|gb|EEN03669.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
Length = 259
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 124/266 (46%), Gaps = 14/266 (5%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + +K + + EGN S++ + SIL + + FF + + +
Sbjct: 1 MA----KDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIAN 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ VL + + + + ++ P L+L F + +Y+IQ + +
Sbjct: 57 SVAVLFNQIGKN-----TDSTEYFYLMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSS 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+KP R++ + R++S +LV+ +KS + L+G + + +N ++ I N
Sbjct: 112 KVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFN 171
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ L ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P
Sbjct: 172 WTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDP 231
Query: 241 IIKNRQKSIAR-----SRIRHKMMEA 261
+K ++K++ R M++
Sbjct: 232 QVKGKRKTLCMPSCKGQSRRRWMVQR 257
>gi|14422432|dbj|BAB60839.1| epaS1 [Escherichia coli]
Length = 243
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + ++ I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYVVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 AR 251
R
Sbjct: 236 IR 237
>gi|157159225|ref|YP_001464194.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
gi|209920314|ref|YP_002294398.1| putative type III secretion protein [Escherichia coli SE11]
gi|256019342|ref|ZP_05433207.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
gi|293449182|ref|ZP_06663603.1| type III secretion protein SctU [Escherichia coli B088]
gi|300815712|ref|ZP_07095936.1| surface presentation of antigens protein SpaS family protein
[Escherichia coli MS 107-1]
gi|307310523|ref|ZP_07590171.1| type III secretion exporter [Escherichia coli W]
gi|331678844|ref|ZP_08379518.1| type III secretion protein EprS [Escherichia coli H591]
gi|332280456|ref|ZP_08392869.1| type III secretion protein EprS [Shigella sp. D9]
gi|157081255|gb|ABV20963.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
gi|209913573|dbj|BAG78647.1| putative type III secretion protein [Escherichia coli SE11]
gi|291322272|gb|EFE61701.1| type III secretion protein SctU [Escherichia coli B088]
gi|300531641|gb|EFK52703.1| surface presentation of antigens protein SpaS family protein
[Escherichia coli MS 107-1]
gi|306909418|gb|EFN39913.1| type III secretion exporter [Escherichia coli W]
gi|320202503|gb|EFW77073.1| surface presentation of antigens protein SpaS [Escherichia coli
EC4100B]
gi|323377251|gb|ADX49519.1| type III secretion exporter [Escherichia coli KO11]
gi|324119899|gb|EGC13778.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1167]
gi|331073674|gb|EGI44995.1| type III secretion protein EprS [Escherichia coli H591]
gi|332102808|gb|EGJ06154.1| type III secretion protein EprS [Shigella sp. D9]
Length = 243
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 8/242 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 AR 251
R
Sbjct: 236 IR 237
>gi|218673114|ref|ZP_03522783.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
Length = 137
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 72/127 (56%), Positives = 104/127 (81%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
M++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY +
Sbjct: 1 MTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAR 60
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA
Sbjct: 61 EENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVA 120
Query: 344 QLIYKIY 350
+LI+++Y
Sbjct: 121 ELIHRVY 127
>gi|213021563|ref|ZP_03336010.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 243
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 3/244 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239
Query: 249 IARS 252
+
Sbjct: 240 MQSE 243
>gi|116515090|ref|YP_802719.1| hypothetical protein BCc_150 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256944|gb|ABJ90626.1| type III protein export, membrane component [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 371
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 1/348 (0%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
+ +NKTE + KI+ G S + + F +L + + L +L
Sbjct: 5 SQENKTEEATPNKIKKFKKNGIFQSSHDLNSFFILLFFFSFFYINKKFIFFYFLK-LFIL 63
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
S + + + I S ++ + + +
Sbjct: 64 SFSFQTNIINQPHFFFDSFFQNIKFLLIFFLILFIGIFFILIISPVLIYKEITKIKFLNF 123
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
+ +++ +K+ + ++ F SF KIILV + I + YF F S + S +
Sbjct: 124 NLNFLNILNNVKKKSLFDLIIEFFFSFFKIILVFFVSFIFVKTMYFKKKYFYSYSFFSNI 183
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ + V + + ++L+ + ++D Y + ++ LKM+ QEIKDE K+ GNPIIK R
Sbjct: 184 FLGYKFVYRFISLLLMIFLIIAIIDSSIKYFKHFNNLKMTIQEIKDEQKELDGNPIIKQR 243
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
+ + + +R + ++ +II + ++A+A++Y N P++ AKG +A ++ K
Sbjct: 244 IRFLMKQTLRKSVFSQVIKSNVIIYDSVNFAVAIQYNIHLNSTPIISAKGSGKVALRIIK 303
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IA E+NIPIF S+A+ L+ I + I + ++A+++ + K
Sbjct: 304 IAEENNIPIFFSNSIAKYLYNNFFIGNNISVNLHYSIAKILAWAWKLK 351
>gi|330895854|gb|EGH28140.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 224
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
++N + S +K I +G + + + T++ +++ + + R +L +IL +
Sbjct: 1 MLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHALVELFRHILRVILGLLL 60
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA--- 261
+ ++D + KL+MS ++IK E KQS G+P +K ++ +A+ + + A
Sbjct: 61 AIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEILNQEPSAAPKP 120
Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+ + L
Sbjct: 121 VEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLT 180
Query: 322 RSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
R+L++ + IP +AV + +
Sbjct: 181 RTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 210
>gi|254439657|ref|ZP_05053151.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
gi|198255103|gb|EDY79417.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
Length = 176
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEAT 262
+ D+ W +Q + KM+ QE+KDE K++ G+P +K + + + R++ R M+
Sbjct: 1 MFDVVWQQYQHNQEQKMTLQEVKDESKETEGSPELKAKIRRLQMTAGKRAKERRAAMDKV 60
Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
+T IITNPTH+A+AL+Y AP ++A G+ A ++ +I E + +F LAR
Sbjct: 61 PTSTAIITNPTHFAVALKYEVGTPGAPEILAMGRGHQAHEIIRIGTESGVTVFRNELLAR 120
Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+LF I IP Y AVA ++ IY
Sbjct: 121 ALFFAGNIGEEIPSPLYTAVASVLAFIYQL 150
>gi|171319013|ref|ZP_02908140.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
gi|171095768|gb|EDT40721.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
Length = 250
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 109/248 (43%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K+E P+ ++ A EG SR+ + + + L F G + + +L
Sbjct: 3 EKSEQPTDNRLRQARREGQISKSRDLTQALAGAMWPLALAGTFYLGFGTAVRVMQGVLDM 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + + I F ++ + + L + L+ + I L+Q +L++ + P+
Sbjct: 63 IGEGAAREPTRIDFAVSRVIVPTITLSVGVALVGAVTAIAMELLQTKGLLSVKPIVPNLG 122
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ +K I+S+ LV+ K+ VK+ +GT I + + + + +IL
Sbjct: 123 KLNPISQLKNIFSLRTLVDLAKNLVKVTAIGTCTLIVIRLGLPDLAGLAAVDAPAILAVT 182
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+ K+ + L +D+G+ +++ LKM+K E+K + KQ G+P+IK ++
Sbjct: 183 THLLFKIATASAGVLVVLAAIDVGYQKYEYIKGLKMTKDEVKRDYKQQEGDPLIKGERRR 242
Query: 249 IARSRIRH 256
+
Sbjct: 243 LHAEMADR 250
>gi|256024634|ref|ZP_05438499.1| surface presentation of antigens protein SpaS [Escherichia sp.
4_1_40B]
gi|300950611|ref|ZP_07164513.1| putative surface presentation of antigens protein SpaS [Escherichia
coli MS 116-1]
gi|300958192|ref|ZP_07170346.1| putative surface presentation of antigens protein SpaS [Escherichia
coli MS 175-1]
gi|300315144|gb|EFJ64928.1| putative surface presentation of antigens protein SpaS [Escherichia
coli MS 175-1]
gi|300450091|gb|EFK13711.1| putative surface presentation of antigens protein SpaS [Escherichia
coli MS 116-1]
gi|309703219|emb|CBJ02554.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|323935780|gb|EGB32083.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1520]
Length = 243
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + +K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 AR 251
R
Sbjct: 236 IR 237
>gi|301643802|ref|ZP_07243839.1| surface presentation of antigens protein SpaS family protein
[Escherichia coli MS 146-1]
gi|301077835|gb|EFK92641.1| surface presentation of antigens protein SpaS family protein
[Escherichia coli MS 146-1]
Length = 243
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLVTEAVKFKLDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+KRI+ + + +K+ + II I + + + + + + S+L
Sbjct: 116 LNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSGWG 175
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 176 EMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRER 235
Query: 250 AR 251
R
Sbjct: 236 IR 237
>gi|207109438|ref|ZP_03243600.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
HPKX_438_CA4C1]
Length = 157
Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
+D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A +
Sbjct: 1 FIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANV 60
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
++TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L+++
Sbjct: 61 VVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRE 119
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
V +N+AIP ++AVA + ++ +
Sbjct: 120 VKLNAAIPEELFEAVAIVFAQVAKLE 145
>gi|255030633|ref|ZP_05302584.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28]
Length = 197
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 105/190 (55%)
Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
+ I ++ T++ + N L F + + + L IA + +LD + + +
Sbjct: 1 MAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKK 60
Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +R
Sbjct: 61 GLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMR 120
Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
Y +T++ AP L+ KG++ +A +R++A +P+ LARS++ + I YK
Sbjct: 121 YDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYK 180
Query: 341 AVAQLIYKIY 350
V +++ ++
Sbjct: 181 DVIEVMKELM 190
>gi|323166469|gb|EFZ52233.1| surface presentation of antigens protein spaS [Shigella sonnei 53G]
Length = 250
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 104/245 (42%)
Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
+ L+Q VL +K F ++ +G+K+I+SI + F KS + +I++
Sbjct: 1 MLPTLVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFW 60
Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
+ + + ++ + + +++ L F + +LD + + + M K
Sbjct: 61 INDRKIIFSQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDK 120
Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
QEIK E + G+ K+R++ + + + + +++ NPTH A+ + +
Sbjct: 121 QEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIA 180
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
AP + N A +RK A E IP + LAR L+K S + V +LI
Sbjct: 181 PAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLI 240
Query: 347 YKIYH 351
+
Sbjct: 241 VWLEQ 245
>gi|226327764|ref|ZP_03803282.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
gi|225203468|gb|EEG85822.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
Length = 227
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 2/221 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ KTE P+ K E A +G S+E S IL + L + +
Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGGVSLLWMSGGFITRELYA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L + + + + ++ L A + P L + IG + +
Sbjct: 60 MLTEGF-TFNHHLIGNENLLIPRFGSLIKQAVFALSPVFLGLVFVAIGGSALLGGINFSS 118
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+K K+ + G+KRI+S+N L K+ +K VG T+ L N+ +L I+
Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSTFVGIAATVFLWHNWNDILHLITLP 178
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
P S L +A + + + + + + DI + K
Sbjct: 179 PLSALANAMQLLIFAVYITVFMLIPMVAFDIIFQIRSHLKK 219
>gi|217032176|ref|ZP_03437675.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
gi|216946166|gb|EEC24775.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
Length = 153
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A +++TN
Sbjct: 1 MIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTN 60
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N
Sbjct: 61 PTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLN 119
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
+ IP ++AVA + ++ +
Sbjct: 120 ATIPEELFEAVAIVFAQVAKLE 141
>gi|190894062|ref|YP_001984356.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
gi|190699723|gb|ACE93806.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
Length = 265
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 1/261 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T
Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPAILEDFTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L SA + L D + V L + +P + S L + ++
Sbjct: 61 SFDSGLQSAGRADLSD-AVTVGLSETGVALLDLIWLPLATGLAATILVSILDGQGFPVSF 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ ++
Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + +L++ + DI S + + +M+K E + E K + G+P
Sbjct: 180 EACTLSATAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEA 261
+K+ ++ I
Sbjct: 240 KLKSARRQIGAEMRSSPPRRQ 260
>gi|21492901|ref|NP_659976.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
gi|21467326|gb|AAM54989.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
Length = 265
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 1/261 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T
Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPDILEDFTR 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L SA + + D + V L + +P + + S L + ++
Sbjct: 61 SFDAGLQSAARADVSD-AVTVGLSETGVALLDLIWLPLAMGLAATILVSILDGQGFPVSF 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ ++
Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
L + +L++ + DI S + + +M+K E + E K + G+P
Sbjct: 180 EACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239
Query: 241 IIKNRQKSIARSRIRHKMMEA 261
+K+ ++ I
Sbjct: 240 KLKSARRQIGAEMRSSPPRRQ 260
>gi|284007676|emb|CBA73401.1| surface presentation of antigens protein SpaS,YscU,EscU,HrcU,SsaU
[Arsenophonus nasoniae]
Length = 275
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 116/257 (45%)
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
+ + + I LIQ +L +K FK++ + +GIKR+ L N K+ + + +
Sbjct: 1 MIFISALAAIIPSLIQSKFILATEAIKLDFKKLDIVQGIKRLVDKRALKNLFKALLFLAI 60
Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
+ + T+L I+Y K ++ LLF + LD Y
Sbjct: 61 FISSCYFFIQSYQSTLLFTQRKTIWHIIYDWRILTLKFVLFFLLFSLPILFLDALCEYFL 120
Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
+S++KM K E+K E K++ GNP IK+ ++ + + + +A +++++I+ NPTH A+
Sbjct: 121 HHSEMKMEKHEVKREYKENEGNPEIKSARRGAHQELLNAETKQAIAQSSMILANPTHIAI 180
Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
+ + + P++ + N A ++ A + IPI LAR ++ + + +
Sbjct: 181 GIYFDPDNSILPLVAVRMANQYALAVQAYAKQIGIPIVRNIKLARQIYHRYRLYETVVKQ 240
Query: 338 FYKAVAQLIYKIYHKKI 354
V + + ++
Sbjct: 241 DLLDVIDIFIWLKQVEM 257
>gi|330975860|gb|EGH75926.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 175
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ +A+
Sbjct: 1 HILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEI 60
Query: 254 IRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
+ + A A +++ NPTHYA+AL Y E P++ KG++ A + A +
Sbjct: 61 LNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKA 120
Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
IP+ + L R+L++ + IP +AV + +
Sbjct: 121 GIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 161
>gi|315301911|ref|ZP_07872923.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
gi|313629719|gb|EFR97840.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
Length = 162
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 93/155 (60%)
Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
+ + L IA + +LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++
Sbjct: 1 FLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQ 60
Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
+ + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R++A +P+
Sbjct: 61 GSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDEVPMI 120
Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
LARS++ + I YK V +++ ++
Sbjct: 121 TNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 155
>gi|197121152|ref|YP_002133103.1| type III secretion exporter [Anaeromyxobacter sp. K]
gi|196171001|gb|ACG71974.1| type III secretion exporter [Anaeromyxobacter sp. K]
Length = 343
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 73/347 (21%), Positives = 147/347 (42%), Gaps = 8/347 (2%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
N+TE P+ +++ +A G +SRE + +++ L L + + L L
Sbjct: 2 SGNRTEQPTPRRLREARRRGEVAVSRELTGAAALAGGLAALAVSAPGATAELGAMLRAAL 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
A+A + L + + RL +P + G G+ +Q P L+L + P
Sbjct: 62 AAANGE----PAGPAAALQGAAAAVLRLSLPACGAALAAGAGAAALQAGPGLSLAALAPR 117
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
+R+ G++R+ S L K ++ + L ++ P ++
Sbjct: 118 LERLDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALPRLGPAALWR 177
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
A + + + A L LD+ + L M++ E++ E ++ G+P+ + +
Sbjct: 178 -APAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAER 236
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ R+ + + + + NPTH A+AL + + AP +VAKG A ++R
Sbjct: 237 QRRHRALLEAPAVARATVVVV---NPTHLAVALHHDRRGGGAPRVVAKGAGEAAARIRSA 293
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
A +P+ + +LAR+L + + IP Y+A A ++ +Y +
Sbjct: 294 ARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340
>gi|171323057|ref|ZP_02911702.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
gi|171091551|gb|EDT37164.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
Length = 216
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 2/205 (0%)
Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
+ +++ ++ VK+ + T+ + + + + +L+
Sbjct: 1 MQTVLDAARACVKLGVYCTLAYRCIADAVRAASH-AGLTAAGLARTLGSASFALATQLLI 59
Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-KMME 260
A TV D ++ +++MS+ E+K E KQ G+P IK R++ + R ++ + +
Sbjct: 60 AAALFTVFDYALVRRRFAKQMRMSRHEVKQEFKQHDGDPRIKQRRRQLQRGLLQRSRSLR 119
Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
A +++TNPTHYA+ LRY E AP +V+KG A ++RK+A+ H + I E P+L
Sbjct: 120 GMRGADVLVTNPTHYAIGLRYTPAEMAAPTIVSKGAGEFALRLRKLAFIHRVQIVEAPAL 179
Query: 321 ARSLFKQVPINSAIPPVFYKAVAQL 345
AR LF+ +++ IPP + A A +
Sbjct: 180 ARQLFRHGALDTEIPPQLFVATAAI 204
>gi|222082192|ref|YP_002541557.1| type III secretion system translocation protein [Agrobacterium
radiobacter K84]
gi|221726871|gb|ACM29960.1| type III secretion system translocation protein [Agrobacterium
radiobacter K84]
Length = 268
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 3/266 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS+ND + K+ PS K++ EG S+E + S+LA YL + +
Sbjct: 1 MSKNDDTEEKSLPPSRVKLDRLRREGQVARSKEIPVAISVLAIAAYLAWALGDILRDFAR 60
Query: 61 DLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
V +A + + + + + L +P LL + S L +
Sbjct: 61 IFGVGFEAAGLTGSPQADPGFPLTAVTNMAEILFGILWVPMLLGLAITIAVSILDGQGFP 120
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
++ H+ R++ GI +++S+ NLV F+K VK+IL+ ++ +
Sbjct: 121 VSTKHMNFDLNRLNPASGIMKLFSVTNLVEFLKGIVKVILLSVAGGGAVLYFLNGIFWAP 180
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
L A + ++++ + D+ S + + +M+K E + E K +
Sbjct: 181 LCGEACSLSVAAHLIGTIVVVAAAIMLAAAFFDLSISRLLFRREHRMTKTEARREHKDTQ 240
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATS 263
G+P +K+ ++ +
Sbjct: 241 GDPHLKSARRRVGAEMRNAPPRREKP 266
>gi|254460321|ref|ZP_05073737.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
HTCC2083]
gi|206676910|gb|EDZ41397.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
HTCC2083]
Length = 137
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 78/130 (60%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MS +E++DE K+S G P +K +++ A+ ++MM A ++I NPTHYA+AL++
Sbjct: 1 MSHKELQDESKESEGAPHLKQARRARAQEVAMNQMMGEFPTADVVIVNPTHYAIALKWEG 60
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
+ + AP+ VAKG + IA ++++ A + + I +P AR+++ V I I P +Y+AVA
Sbjct: 61 SRSAAPICVAKGVDDIAMRIKEAAKDAKVAIHSDPPTARAIYAVVEIGQEINPEYYEAVA 120
Query: 344 QLIYKIYHKK 353
I K
Sbjct: 121 VAIRFAEALK 130
>gi|86157128|ref|YP_463913.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773639|gb|ABC80476.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
Length = 343
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 4/263 (1%)
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
RL +P ++ G + +Q P L+L + P +R+ G++R+ S + L
Sbjct: 82 VLRLSLPACGGALLAGAAAAALQAGPGLSLAALAPRLERLDPARGLRRLLSTSQLAAAAL 141
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
VK ++ + L ++ P ++ + + + A L LD
Sbjct: 142 GLVKAAVLAALACGWLAGAAPSLAALPRLGPAALWRSPA-VLGGLTWRLAAAFAVLGALD 200
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
+ + L M++ E++ E ++ G+P+ + ++ R+ + + + +
Sbjct: 201 LALVRRRHRRALMMTRDEVRREHREDEGDPLHRAERQRRHRALLEAPAVARATVVVV--- 257
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NPTH A+AL + + + AP +VAKG A ++R A +P+ + +LAR+L + +
Sbjct: 258 NPTHLAVALHHDRRDGGAPRVVAKGAGDAAARIRSAARRAGVPVVRDVALARALHRLAEV 317
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
IP Y+A A ++ +Y +
Sbjct: 318 GDEIPEALYEAAAAVLAHLYGLE 340
>gi|330874619|gb|EGH08768.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 234
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 98/235 (41%), Gaps = 3/235 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++ L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + +L + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRLVSSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S N++N + S +K + +G + + + ++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVK 234
>gi|289805082|ref|ZP_06535711.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 224
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 3/225 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ ++ + L SA + G+++ +GS +Q V+ + +
Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFKSE 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
++ K+I+S++++V KS +K+I++ I T +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
++ + + ++ F + +LD + Y++ LKMSK ++K E
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEQ 224
>gi|238759386|ref|ZP_04620551.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
gi|238702413|gb|EEP94965.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
Length = 240
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/206 (20%), Positives = 90/206 (43%)
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
MK+F+ +++ G + + + ++ +I+ L + +
Sbjct: 1 MKAFLYLLVFGASAALFFIFWRQEIFMLYRTTINGMIGQWGHLCITFIIVFLAVALLILL 60
Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
+D + + LKM KQE+K E K + G+P IK+ ++ + + + ++ +T I
Sbjct: 61 IDTLTEFFLFMKDLKMEKQEVKKEHKDNDGDPHIKSARRGLHQELLSEEVKANVRDSTFI 120
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ NPTH A+A+ + P ++ K + L AK + A +P+ + LAR L++
Sbjct: 121 MANPTHIAMAIYFNTDIAPLPFIMMKTKGLQAKAVVAYAESQGVPVVRDIPLARQLWRHY 180
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKKI 354
+S I V +I + ++
Sbjct: 181 RKDSFIDEQGLDDVMHVINWLIRVEL 206
>gi|211939072|pdb|2W0R|A Chain A, Crystal Structure Of The Mutated N263d Yscu C-Terminal
Domain
Length = 144
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 73/131 (55%)
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
+LKMSK EIK E K+ G+P IK++++ + M E R+++++ +PTH A+
Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVADPTHIAIG 60
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
+ Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP
Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120
Query: 339 YKAVAQLIYKI 349
+A A+++ +
Sbjct: 121 IEATAEVLRWL 131
>gi|323152630|gb|EFZ38906.1| flagellar biosynthetic flhB domain protein [Escherichia coli
EPECa14]
Length = 169
Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
L + D + I+ + L A ++P + ++ + S ++ V + +
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 120
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
+P F +++ GIKR++S +K+ +K ILVG++
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFF 162
>gi|148645118|gb|ABR01083.1| FlhB [uncultured Geobacter sp.]
gi|148645120|gb|ABR01084.1| FlhB [uncultured Geobacter sp.]
Length = 114
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/113 (38%), Positives = 70/113 (61%)
Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
QE+KDE K G+P +K++ K + + ++ + A +IITNPTH+A+AL+Y +
Sbjct: 1 QEVKDEHKDMEGDPQVKSKIKGLQFQKAFQRLQKIIPTADVIITNPTHFAVALKYDRDRM 60
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
APV++AKG + +A++++ +A E+NI + E LAR L+ QV IP Y
Sbjct: 61 AAPVVIAKGADFMAQRIKALARENNITLVENRFLARELYAQVKEGEEIPEALY 113
>gi|224170147|ref|XP_002339344.1| predicted protein [Populus trichocarpa]
gi|222874949|gb|EEF12080.1| predicted protein [Populus trichocarpa]
Length = 113
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 66/98 (67%)
Query: 253 RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312
R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A +RKIA E +
Sbjct: 1 MARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIRKIAREARV 60
Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
P+ E P LAR+L+ P++ IP FY+AVA+++ +Y
Sbjct: 61 PVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLY 98
>gi|185177891|pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 41 21 2
gi|185177892|pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 21 21 21
Length = 137
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 70/124 (56%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MSK E+K E K + GNP IK ++ + + ++T+I+ +PTH A+ L Y
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKL 66
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA
Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126
Query: 344 QLIY 347
QLI
Sbjct: 127 QLIR 130
>gi|222446917|pdb|2JLH|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
Pestis Yscu N263a Mutant
Length = 144
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 72/131 (54%)
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
+LKMSK EIK E K+ G+P IK++++ + M E R+++++ PTH A+
Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAPTHIAIG 60
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
+ Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP
Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120
Query: 339 YKAVAQLIYKI 349
+A A+++ +
Sbjct: 121 IEATAEVLRWL 131
>gi|255019035|ref|ZP_05291161.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
F2-515]
Length = 193
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 112/193 (58%)
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
+++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ +
Sbjct: 1 MLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALL 60
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
I L+ + I ++ T++ + N L F + + + L IA + +LD +
Sbjct: 61 LITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFY 120
Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
+ + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPT
Sbjct: 121 QRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPT 180
Query: 274 HYALALRYIQTEN 286
H ++ +RY +T++
Sbjct: 181 HISVVMRYDKTKD 193
>gi|185177893|pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal
Domain
gi|313507295|pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With P263a
Mutation,Space Group P 1 21 1
Length = 137
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 69/124 (55%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MSK E+K E K + GNP IK ++ + + ++T+I+ N TH A+ L Y
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKL 66
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA
Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126
Query: 344 QLIY 347
QLI
Sbjct: 127 QLIR 130
>gi|220915853|ref|YP_002491157.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953707|gb|ACL64091.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
Length = 343
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 113/263 (42%), Gaps = 4/263 (1%)
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
RL +P + G + +Q P L+ + P +R+ G++R+ S L
Sbjct: 82 VLRLSLPACGAALAVGAAAAALQAGPGLSFAALAPRLERIDPARGLRRLLSGAQLAAAAL 141
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
K ++ + L ++ P ++ A + + + A L LD
Sbjct: 142 GLAKSAVLAALAWGWLAGAAPSLAALPRLGPAALWR-APAVLGGLAWRLAAAFAVLGALD 200
Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
+ + L M++ E++ E ++ G+P+ + ++ R+ + + + +
Sbjct: 201 LALVRRRHRRALMMTRDEVRREHREDEGDPLHRAARQRRHRALLEAPAVARATVVVV--- 257
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NPTH A+AL++ + AP +VAKG A ++R A +P+ + +LAR+L + +
Sbjct: 258 NPTHLAVALQHDRRGGGAPRVVAKGAGEAAARIRSAARRAGVPVVRDVALARALHRLAEV 317
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
IP Y+A A ++ +Y +
Sbjct: 318 GDEIPEALYEAAAAVLAHLYGLE 340
>gi|185177890|pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal
Domain
Length = 137
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 69/124 (55%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MSK E+K E K + GNP IK ++ + + ++T+I+ PTH A+ L Y
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKL 66
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA
Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126
Query: 344 QLIY 347
QLI
Sbjct: 127 QLIR 130
>gi|187919907|ref|YP_001888938.1| putative type III secretion transmembrane protein,
EscU/SctU/YscU-like protein [Burkholderia phytofirmans
PsJN]
gi|187718345|gb|ACD19568.1| putative type III secretion transmembrane protein,
EscU/SctU/YscU-like protein [Burkholderia phytofirmans
PsJN]
Length = 246
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 108/247 (43%), Gaps = 3/247 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+KTEAP+ ++ A +G+ S S+ S L L++LL +P +Y V + +
Sbjct: 3 DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLL-MDAPHVYQVCVHVVEVATQ 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q + + ++ +T +A +++ L + + + + Q V + P FK
Sbjct: 62 IDQGQPFAVRYL--QITRAFGAAMPILLATLGVGALAVVVPEVAQAGGVFAVKRALPDFK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ G+K ++ + L++ ++ ++ ++ + +L + L
Sbjct: 120 RLNPVTGLKNLFGLKTLIDTGIVLMQFCILVFVLWHAFATWCAQLLPAFALAFGGQLSVT 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
++ ++ ++ +D QW +L+M K EIK E + G+P +K R+++
Sbjct: 180 AQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGDPHVKGRRRA 239
Query: 249 IARSRIR 255
+ R R
Sbjct: 240 LHRELSR 246
>gi|91782705|ref|YP_557911.1| putative type III secretion transmembrane protein,
EscU/SctU/YscU-like [Burkholderia xenovorans LB400]
gi|91686659|gb|ABE29859.1| Putative type III secretion transmembrane protein,
EscU/SctU/YscU-like protein [Burkholderia xenovorans
LB400]
Length = 246
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 107/247 (43%), Gaps = 3/247 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
+K+EAP+ ++I A +G S ++ S L +YL F +P +Y++ S L + + +
Sbjct: 3 DKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYL-FIEAPHLYALGSQLILHVTT 61
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ D + + V+ L + ++ + L+Q VL V P K
Sbjct: 62 LDASR--DFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVK 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
R++ G+K+++S+ L + + + ++ ++ + T ++ + + L +
Sbjct: 120 RLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAWLRQLAPAWEFSLPVHLGYT 179
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
+L + V D W L+M K EIK E + G+P +K+R+++
Sbjct: 180 AIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRA 239
Query: 249 IARSRIR 255
+ R +
Sbjct: 240 LHRELGQ 246
>gi|222446919|pdb|2JLJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
Pestis Yscu N263a P264a Mutant
Length = 144
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 71/131 (54%)
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
+LKMSK EIK E K+ G+P IK++++ + M E R+++++ TH A+
Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIG 60
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
+ Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP
Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120
Query: 339 YKAVAQLIYKI 349
+A A+++ +
Sbjct: 121 IEATAEVLRWL 131
>gi|296162493|ref|ZP_06845284.1| type III secretion exporter [Burkholderia sp. Ch1-1]
gi|295887306|gb|EFG67133.1| type III secretion exporter [Burkholderia sp. Ch1-1]
Length = 246
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 110/246 (44%), Gaps = 3/246 (1%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
K+EAP+ K+I A +G S ++ S L +YL F +P +Y++ ++L + + +
Sbjct: 4 KSEAPTPKRIRRARRDGEISKSTHLTVAFSGLCWWLYL-FIEAPHLYALGNELILRVTTL 62
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + + + V+ L + + + L+Q +L V P KR
Sbjct: 63 DGSR--EFGDRLASTCAALYAFMSPVLAALGVGALAVLVPELMQTRGLLAWKRVMPDVKR 120
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ G+K+++S+ + + + + ++ ++ + +L + + + L +A
Sbjct: 121 LNPVNGLKQMFSLRLVWDTVLTIIQFTILLFLFVQALVAWLRQLAPIWTFSLPVHLGYAA 180
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +L+ + + V D W L+M K EIK E + G+P +K+R++++
Sbjct: 181 VSHSHLLLWMTVSQIAPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRAL 240
Query: 250 ARSRIR 255
R +
Sbjct: 241 HRELGQ 246
>gi|313639087|gb|EFS04065.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171]
Length = 134
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 79/127 (62%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY +
Sbjct: 1 MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 60
Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
++ AP L+AKG++ +A +R++A +P+ LARS++ + I YK V
Sbjct: 61 AKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 120
Query: 344 QLIYKIY 350
+++ ++
Sbjct: 121 EVMKELM 127
>gi|211938988|pdb|2V5G|A Chain A, Crystal Structure Of The Mutated N263a Yscu C-Terminal
Domain
Length = 144
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 70/131 (53%)
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
+LK SK EIK E K+ G+P IK++++ + E R+++++ PTH A+
Sbjct: 1 IKELKXSKDEIKREYKEXEGSPEIKSKRRQFHQEIQSGNXRENVKRSSVVVAAPTHIAIG 60
Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
+ Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP
Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120
Query: 339 YKAVAQLIYKI 349
+A A+++ +
Sbjct: 121 IEATAEVLRWL 131
>gi|167841195|ref|ZP_02467879.1| type III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 250
Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 99/259 (38%), Gaps = 22/259 (8%)
Query: 9 NKTEAPSS-----------KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS 57
KTE P+ SR+ + + A + F +
Sbjct: 3 EKTEQPTESRLRRERRAGR-----------ISKSRDLTQAVAGAAWPLAFALSFDFVFGA 51
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
LH L + D + + F ++ + + L + I L+Q +
Sbjct: 52 AVRVLHGLFELIGEGGPPDSARMDFAMSRVIVPTIALSVGVAAAGAAISIALELMQTKGL 111
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
L++ V P+F +++ +K I+S+ LV K+ VK+ VG + + +
Sbjct: 112 LSMKPVTPNFGKLNPINQLKSIFSLRTLVELAKNLVKVAAVGACTLVVIRVALPDLAVVA 171
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ + S L + ++ + + L V+D+G+ +++ LKM+K E+K + KQ
Sbjct: 172 TVDLPSALNLTTSLLFRIATASIAVLVALAVIDVGYQRYEYIKGLKMTKDEVKRDYKQQE 231
Query: 238 GNPIIKNRQKSIARSRIRH 256
G+P++K ++
Sbjct: 232 GDPLVKGERRRQHAELADR 250
>gi|218507112|ref|ZP_03504990.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
Length = 218
Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 95/166 (57%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP++KK DA +GN P SRE S+F+++LA IYL+FF + ++ L
Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATVLATFIYLVFFLPENVGRMSETLR 76
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L +
Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
+P R+S +G R++S+ L+ F KS +++VG I+ L N
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFNVVVVGVILFFVLRAN 182
>gi|222446918|pdb|2JLI|A Chain A, Atomic Resolution Structure Of The Cytoplasmic Domain Of
Yersinia Pestis Yscu, A Regulatory Switch Involved In
Type Iii Secretion
Length = 123
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 67/122 (54%)
Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
EIK E K+ G+P IK++++ + M E R+++++ NPTH A+ + Y + E
Sbjct: 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP 60
Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
P++ K + + +RKIA E +PI + LAR+L+ ++ IP +A A+++
Sbjct: 61 LPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 120
Query: 348 KI 349
+
Sbjct: 121 WL 122
>gi|254460203|ref|ZP_05073619.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
HTCC2083]
gi|206676792|gb|EDZ41279.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
HTCC2083]
Length = 217
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 1/218 (0%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D +K+ P+ KK++D +G S E ++ S + L + S +
Sbjct: 1 MAEEDDVADKSHDPTQKKLDDVRKKGEVAKSNEVNVALSYFGIWVLLAVLGGVSVSSFGT 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L +A R+ + L L L A + V ++ + + L +R +
Sbjct: 61 TLQSGLLNAFSRE-PSLHFSPGLFAPLLLGAGQFVGLMAIMPAALIVLALLARRTFLFTS 119
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ +KP R+S+ + K + L F KSFVK+++ + + L N+ T++ +A+
Sbjct: 120 SKLKPKASRISILKNAKNKFGRGGLFEFAKSFVKLLVFSLCLGLFLNANFDTIVVTSAAS 179
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
+ F + L + +L A + ++D GW +
Sbjct: 180 ERGAISVLFDLMTSFLSLAVLIAAVIAIIDYGWQVSEH 217
>gi|213423874|ref|ZP_03356854.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 228
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 87/208 (41%)
Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
+ + + +K+ + + I + + ++ N I + +++ L
Sbjct: 1 MRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLLALVLTCLA 60
Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
+ +LD Y +KM K+E+K E+K+ GNP +K++++ + + ++
Sbjct: 61 CALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSD 120
Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
+ +I+ NPTH + + + P++ N A +R A + +P+ + LA
Sbjct: 121 IENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLA 180
Query: 322 RSLFKQVPINSAIPPVFYKAVAQLIYKI 349
RSLFK + V +L+ +
Sbjct: 181 RSLFKTHRRYDLVSLEEIDEVLRLLVWL 208
>gi|110632475|ref|YP_672683.1| type III secretion exporter [Mesorhizobium sp. BNC1]
gi|110283459|gb|ABG61518.1| type III secretion exporter [Chelativorans sp. BNC1]
Length = 339
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 116/339 (34%), Gaps = 26/339 (7%)
Query: 7 PDNKTEAPSSKKIEDALNE---------GNAPISREASLFSSILACLIYLLFFFSPGIYS 57
KTEAP+ G P + + + ++ L++ F P +
Sbjct: 2 SGEKTEAPTP---------RRLEERRREGQVPQRKNIIEAALLTFVVVLLIWLFRPLSEA 52
Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+ + + +S + D+ ++ ++ +F + + +
Sbjct: 53 LLNLSAAVFSSISH----DLEAATATSLVAAMPVVHWMLAICGASALFTLLLSCVLNKFM 108
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
+ P F+R + IK I+S L +FM+ V V I N L
Sbjct: 109 FAPKALAPKFERFNPVGQIKSIFSKATLYSFMRMIVLFTAVSAIFIYLYVANMDNSLQAS 168
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ + ++ +L + L ++D + S+ KM+K+E+K E K
Sbjct: 169 HCGEACLYDLFTSRIGMLVAAVLGVLIVLALIDYKIQDRMFISQNKMTKEEVKREYKDQE 228
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+ IK +KSIA + ++ ++ + + A+ + P LV K
Sbjct: 229 GDREIKAGRKSIALNDAAAPLLSESTH----VVHSDQVLAAVIFYPGAGYPPYLVFKAMG 284
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
+ + NIP F P A ++ +P
Sbjct: 285 ASVPGLCRKFLAMNIPTFNVPGAALEFYRMSAPGQYLPA 323
>gi|330879005|gb|EGH13154.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 279
Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 110/243 (45%), Gaps = 1/243 (0%)
Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNHVKPSFKRVSLREGIKRIYS 141
LL H + +P + + + I + ++ V ++ ++P KR++ EG KRI++
Sbjct: 31 LLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVFSIEPIQPDIKRINPTEGFKRIFA 90
Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
+ NL+ F+K VK++L+ + + +++ I + ++ ++ +L
Sbjct: 91 MRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSRCGEGCIESTFYLVLKPLVFTVLA 150
Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
+ +D+ + ++KMS E K E K G+P+IK ++ R
Sbjct: 151 AFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLG 210
Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
RA+++I + + + +RY++ E P++V + + + + A I + + SLA
Sbjct: 211 LGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLA 270
Query: 322 RSL 324
+
Sbjct: 271 EMI 273
>gi|307944387|ref|ZP_07659728.1| putative secretion system apparatus protein SsaU [Roseibium sp.
TrichSKD4]
gi|307772733|gb|EFO31953.1| putative secretion system apparatus protein SsaU [Roseibium sp.
TrichSKD4]
Length = 259
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 8/259 (3%)
Query: 94 LVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
+V+P ++L + F + + ++ V + +KP F +++ G+K I+ + L +
Sbjct: 6 IVLPIMMLVIFFSVLASIMMTQGFVFSTERMKPDFNKLNPANGLKNIFGLQALKTALMHV 65
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
+++ GTI+ + T+ + VL+ +L+ ++D
Sbjct: 66 LRLSFSGTILIFLIYYFVPTVFLSPYCELDCGISVNATVYFYVLLALLILSIIFAMIDFV 125
Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
++ + KM+ E K E K+ GNP IK R K I + + + A+ I+ +
Sbjct: 126 VQRSEFLRQNKMTDTEQKQEKKEQLGNPEIKGRIKEIQQEVVTKTV--GMRNASFIVADG 183
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+A+RY+ + P +VAK + A + ++A E P+ L +L K++ +
Sbjct: 184 LKQAVAIRYVPGGEEMPTIVAKARGRNA--VLRLASESGKPVEHSAELL-ALVKKIGVGD 240
Query: 333 AIPPVFYKAVAQLIYKIYH 351
I AV L+ ++
Sbjct: 241 PIMDE--AAVKHLVPFLHK 257
>gi|270487693|ref|ZP_06204767.1| conserved domain protein [Yersinia pestis KIM D27]
gi|270336197|gb|EFA46974.1| conserved domain protein [Yersinia pestis KIM D27]
Length = 216
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 45/218 (20%), Positives = 94/218 (43%), Gaps = 3/218 (1%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F ++ S
Sbjct: 2 SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFLPY-YKALVSQSF 60
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
V +A + + + FLL +L + A L L+ +F + + LI +
Sbjct: 61 VSVAQLASQLDDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTPVKL 118
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
P K++S GIKRI+S +N +K K +V + + + + +L +
Sbjct: 119 IPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEE 178
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
+ F +L+ + + +DI S+H + K
Sbjct: 179 AITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKK 216
>gi|46204446|ref|ZP_00049997.2| COG1377: Flagellar biosynthesis pathway, component FlhB
[Magnetospirillum magnetotacticum MS-1]
Length = 97
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 68/93 (73%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M+ RAT++I NPTH+A+ALRY TEN AP+++AKGQ+LIA ++R IA E I + E+
Sbjct: 1 MLANVDRATVVIANPTHFAVALRYEPTENPAPLVLAKGQDLIALRIRAIAEEKGIAVIED 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
LARSL+ V ++ IP FY+AVAQ+++ ++
Sbjct: 61 KPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 93
>gi|330893300|gb|EGH25961.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
mori str. 301020]
Length = 140
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTE 285
IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y E
Sbjct: 1 IKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGE 60
Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
P++ KG++ A + A + IP+ + L R+L++ + IP +AV +
Sbjct: 61 TPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHI 119
Query: 346 IYKIYHK 352
+
Sbjct: 120 YKVVRQL 126
>gi|315301909|ref|ZP_07872922.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
gi|313629725|gb|EFR97845.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
Length = 182
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
LL +++ I + ++++P +++ ++FG+ +Y +Q + +
Sbjct: 57 GFVALLKQPP-----NLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSA 111
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
VKP FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N
Sbjct: 112 KAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQN 171
Query: 181 PHSILYHAFFT 191
L F
Sbjct: 172 WLYSLKQIFSL 182
>gi|149912839|ref|ZP_01901373.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
gi|149813245|gb|EDM73071.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
Length = 119
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
+K ++ A + + A ++I NPTHYA+AL + + N APV VAKG + +A
Sbjct: 1 MKQERRQRASRLASDQTIADVPNADVVIVNPTHYAVALTWSRAPNSAPVCVAKGVDYMAL 60
Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
+R++A +H +P+ +P AR++ I I P Y+AVA I
Sbjct: 61 AIREMAEDHGVPVRSDPPTARAIHATTEIGMEIDPGQYQAVAAAIRF 107
>gi|218678319|ref|ZP_03526216.1| flagellar biosynthesis protein FlhB [Rhizobium etli CIAT 894]
Length = 169
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/169 (37%), Positives = 100/169 (59%)
Query: 12 EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
EAP++KK DA +GN P SRE S+F++ILA IYL+FF G+ +T L + Q
Sbjct: 1 EAPTAKKQSDAAEKGNLPSSRELSIFATILATYIYLVFFLPEGVGRMTETLRDIFEQPDQ 60
Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
K+E I+ L L +++ LV P L++FM+FGI S + Q +P L ++P R+S
Sbjct: 61 WKIETGPDILSLFVRLGWASAALVAPALIMFMVFGIASSVFQNLPTPVLERIRPQASRIS 120
Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+G R++S+ L+ F KS K+++VG I+ L YF+ +D + ++
Sbjct: 121 PAKGWGRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 169
>gi|154175076|ref|YP_001408824.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
gi|112803684|gb|EAU01028.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
Length = 215
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 81/169 (47%), Gaps = 4/169 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ D KTE +SKKIEDA +GN P S++ + F++++ ++ LL + V +
Sbjct: 1 MA--DDDQEKTEEATSKKIEDAKKDGNVPKSQDIAGFATLVIAILVLLAMLNFMREQVVA 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L++ + ++ S + ++ + + +++P + + GI + ++Q +
Sbjct: 59 -LYIYYSKFIGVEI-TPSALNLIVINTLARSLLMILPICICVAIAGIVANVMQFGFIFTT 116
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
+ P +++ +G+K ++S+ ++ +K K+ V + +
Sbjct: 117 KPITPDINKINPLKGLKNLFSMKKAIDSVKIVAKVSAVFGVAFYFFLQF 165
>gi|261884065|ref|ZP_06008104.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 99
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 51/90 (56%), Positives = 70/90 (77%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+
Sbjct: 1 MINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFED 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
LAR+L+KQV ++ I P FYKAVA+LI
Sbjct: 61 VQLARALYKQVNVDQMIAPEFYKAVAELIR 90
>gi|330883669|gb|EGH17818.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 138
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ ++
Sbjct: 1 LFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLS 60
Query: 251 RSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ + A A +++ NPTHYA+AL Y E P++ KG++ A + A
Sbjct: 61 HEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARA 120
Query: 308 YEHNI 312
+ I
Sbjct: 121 KKAGI 125
>gi|213024578|ref|ZP_03339025.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 183
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 67/149 (44%)
Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260
+ +LD Y +KM K+E+K E+K+ GNP +K++++ + + ++
Sbjct: 15 ACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKS 74
Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
+ +I+ NPTH + + + P++ N A +R A + +P+ + L
Sbjct: 75 DIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKL 134
Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
ARSLFK + V +L+ +
Sbjct: 135 ARSLFKTHRRYDLVSLEEIDEVLRLLVWL 163
>gi|323180302|gb|EFZ65854.1| surface presentation of antigens protein spaS [Escherichia coli
1180]
Length = 210
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 8/212 (3%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L +YL + F ++ + S L +L + + D + + + IP L
Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTNIPFL 52
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
L+ M I Q L VK F ++ G+KRI+ + + F+K+ + I+
Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIVFFA 112
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
I + + + + + + S+L + +++ L + + + D Y +
Sbjct: 113 LAIKVFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172
Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+KM KQE+K E K+ GNP IK++++ R
Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 204
>gi|213620930|ref|ZP_03373713.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 123
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
+ +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P
Sbjct: 1 QRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 60
Query: 315 FEEPSLARSLFKQVP 329
E P LAR+L++
Sbjct: 61 LEAPPLARALYRHAE 75
>gi|302390418|ref|YP_003826239.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
gi|302201046|gb|ADL08616.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
Length = 96
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL+Y ++ AP +VA G+ A+++ + A EH IP+ +P LA +L V +
Sbjct: 8 PQRKAVALKYDPEKDGAPRVVASGRGETAERIIQTAKEHGIPLHTDPELAGALL-SVEVG 66
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA+++ IY
Sbjct: 67 LEIPPELYRAVAEILAFIYRL 87
>gi|229195982|ref|ZP_04322734.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
gi|228587364|gb|EEK45430.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
Length = 108
Score = 119 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
+ ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R +A E
Sbjct: 1 MHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRTLARE 60
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
IP+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 61 QEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 102
>gi|315256731|gb|EFU36699.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 85-1]
Length = 192
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
++ G+KRI+ + + F+K+ + IIL
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIILFFFFCHW 150
>gi|226326420|ref|ZP_03801938.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
gi|225205203|gb|EEG87557.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
Length = 145
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 60/133 (45%)
Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
+ M K E+K E K G+P IK+ +K + + + M + ++ +I NPTH A+ + +
Sbjct: 1 MMMEKHEVKQENKNMEGDPEIKSTRKQLHQELLDEPMKKVIRDSSAVIVNPTHVAVGIYF 60
Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
P++ K N A ++ A E P+ P LAR ++ + + +
Sbjct: 61 DPDNGIMPLVSLKCVNAKALAVKSYAKEVGTPVVRYPELARKIYHRYHLFEVMMDQDLLD 120
Query: 342 VAQLIYKIYHKKI 354
+ ++ + +I
Sbjct: 121 IMDILIWLKKIEI 133
>gi|74317194|ref|YP_314934.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
ATCC 25259]
gi|74056689|gb|AAZ97129.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
ATCC 25259]
Length = 261
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/272 (15%), Positives = 109/272 (40%), Gaps = 13/272 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + ++TE S+++++DA G+ P S E + + +LA + L + + S+ +
Sbjct: 1 MAEEND-LSRTEPASARRLQDARAAGDVPRSSEFAAWLVLLAAIGVLSWQGPRLLGSLQT 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+ L A + + V SA V+P L + + + L+ V
Sbjct: 60 LVATALQHAAKPFSPAVVEAVG-------SALWAVLPVLGAVFVAALIAPLLLSRWVYAP 112
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+R + R++S++++ + + +K+ L + + + + +
Sbjct: 113 GS---HPRRRHPFHAVARLFSLDSVADLALTLLKVALAALAVWWAFGASTPGIAALDAIA 169
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
+ A + ++ ++ +A + LD GW + ++ + M+ QE+ E +++ +P
Sbjct: 170 ADAAPEAAAGWLGHGVLALVAGLALVAALDAGWQWLRYLRRHAMTWQEVLAEAREAEVHP 229
Query: 241 IIKNRQKSIARSRIR--HKMMEATSRATIIIT 270
I+ + + + +I
Sbjct: 230 EIRAQLRGRQQQAGARPRPATAEHPVIDEVIG 261
>gi|217032175|ref|ZP_03437674.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
gi|216946165|gb|EEC24774.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
Length = 164
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ M+ ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
++P F +++ G+K ++S+ L++ +K+ LV
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLVFFSWGF 158
>gi|300906602|ref|ZP_07124293.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 84-1]
gi|300401641|gb|EFJ85179.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 84-1]
Length = 192
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
++ G+KRI+ + + F+K+ + IIL +
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIILFFFFLHW 150
>gi|300820658|ref|ZP_07100809.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 119-7]
gi|300526922|gb|EFK47991.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 119-7]
Length = 188
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 11/193 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+ + + F+K+ + I+ + + + + +L IS + I
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQIGE 175
Query: 187 HAFFTVRKVLIMI 199
+ ++ +
Sbjct: 176 RCYSFSYCIVSAV 188
>gi|323183412|gb|EFZ68809.1| surface presentation of antigens protein spaS [Escherichia coli
1357]
Length = 190
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTII----TISLTENYFTMLDF 176
++ G+KRI+ + + F+K+ + IIL + + F L
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIILFFLHWRSKYFEVIINHCFLKLLM 166
>gi|309793919|ref|ZP_07688344.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 145-7]
gi|308122326|gb|EFO59588.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 145-7]
Length = 188
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 11/193 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK F
Sbjct: 62 AKPNIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+ + + F+K+ + I+ + + + + +L IS + I
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQIGE 175
Query: 187 HAFFTVRKVLIMI 199
+ ++ +
Sbjct: 176 RCYSFSYCIVSAV 188
>gi|108762856|ref|YP_630671.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
gi|108466736|gb|ABF91921.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
Length = 94
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+++ A+AL+Y + ++ AP +VAKG L A+K+R+IA EHNIP+ +LA +L++ V
Sbjct: 1 MSDDAEIAIALKYDKEKDGAPRVVAKGMRLKAEKIREIAREHNIPLMRNVNLANALYR-V 59
Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
+ +P Y AVA+++ +Y
Sbjct: 60 EVGQEVPEELYDAVAEVLNFVYEL 83
>gi|213029691|ref|ZP_03344138.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 107
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 49/98 (50%)
Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
+ ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA + IP+
Sbjct: 1 SGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPV 60
Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
E LARSLF +V IP ++ VA L+ +
Sbjct: 61 VENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI 98
>gi|71388156|gb|AAZ31290.1| EpaS1 [Escherichia coli]
Length = 155
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
++ G+KRI+ + + F+K+ + IIL I
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVKAILYIILFFFCI 148
>gi|167463786|ref|ZP_02328875.1| FlhB domain protein [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322382570|ref|ZP_08056450.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153486|gb|EFX45891.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 110
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
N A+AL+Y + APV++AKG IA+ + A EH IP+ E+PSL L ++
Sbjct: 14 GNSLKKAVALKYNPGQGQAPVVIAKGTGKIAEDILSKAEEHGIPVQEDPSLVEVL-SKLD 72
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
++ IPP Y+ VA+++ IY
Sbjct: 73 LDQEIPPELYQLVAEILTFIYR 94
>gi|330975861|gb|EGH75927.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 195
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 30/196 (15%), Positives = 76/196 (38%), Gaps = 3/196 (1%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIA---SEGFTVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+++ K+++S NL+N + S +K I +G + + + T++ +++ + +
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179
Query: 189 FFTVRKVLIMILLFIA 204
R +L +IL +
Sbjct: 180 VELFRHILRVILGLLL 195
>gi|301026126|ref|ZP_07189600.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 196-1]
gi|299879821|gb|EFI88032.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 196-1]
Length = 188
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 11/193 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + IP LL+ M I Q L VK
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLDS 115
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSILY 186
++ G+KRI+ + + +K+ + II + + + + +L IS + I
Sbjct: 116 LNPVNGLKRIFGLKTVKESVKAILYIIFLHWRSKYFGVIINHCFLKLLMEISYLYYQIGE 175
Query: 187 HAFFTVRKVLIMI 199
+ ++ +
Sbjct: 176 RCYSFSYCIVSAV 188
>gi|297617102|ref|YP_003702261.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
12680]
gi|297144939|gb|ADI01696.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
12680]
Length = 92
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY ++APV+ AKG+ L+A+K+ ++A E +PI E+P L L + I IP
Sbjct: 11 AVALRYDPEIHEAPVVTAKGRGLLAEKIIELARESGVPIKEDPQLVEYL-AMLDIYQEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ VA+++ +Y
Sbjct: 70 PELYQVVAEILAFVYRL 86
>gi|317051555|ref|YP_004112671.1| type III secretion exporter [Desulfurispirillum indicum S5]
gi|316946639|gb|ADU66115.1| type III secretion exporter [Desulfurispirillum indicum S5]
Length = 128
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y Q ++ AP++ AKGQ +A+ + A EH + I E+P L +L + I+ IP
Sbjct: 47 AVALKY-QDKSRAPLVSAKGQGHVAEAIIDKAREHGVAIHEDPDLVVAL-SALEIDQEIP 104
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA+++ +Y
Sbjct: 105 EELYQAVAEVLAFLYK 120
>gi|297538192|ref|YP_003673961.1| type III secretion exporter [Methylotenera sp. 301]
gi|297257539|gb|ADI29384.1| type III secretion exporter [Methylotenera sp. 301]
Length = 119
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ NP A+AL Y E AP +VAKG+ IA+++ A EH++ + E L +L QV
Sbjct: 26 VVNPNQQAIALAYAAGEY-APKVVAKGRGAIAEQIIARAKEHDVFVHESKDLV-ALLMQV 83
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
++ IPP Y+A+A+++ +Y +
Sbjct: 84 DLDDHIPPALYQAIAEILAWLYKLE 108
>gi|115377833|ref|ZP_01465021.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
DW4/3-1]
gi|310820311|ref|YP_003952669.1| type III secretion exporter family protein [Stigmatella aurantiaca
DW4/3-1]
gi|115365165|gb|EAU64212.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
DW4/3-1]
gi|309393383|gb|ADO70842.1| Type III secretion exporter family protein [Stigmatella aurantiaca
DW4/3-1]
Length = 93
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+AL+Y Q ++ AP +VAKG L A+K+R+IA ++NIP+ + LA +L++ V +
Sbjct: 3 DEAEIAIALKYDQNKDSAPRVVAKGMRLKAEKIREIAKQYNIPVMKNLPLASALYR-VDV 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+P Y AVA+++ +Y
Sbjct: 62 GQEVPEELYDAVAEVLNFVYAL 83
>gi|295399795|ref|ZP_06809776.1| type III secretion exporter [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111693|ref|YP_003990009.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
gi|294978198|gb|EFG53795.1| type III secretion exporter [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216794|gb|ADP75398.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
Length = 92
Score = 109 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ I
Sbjct: 3 NEKKQAVALSYDANIHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEI 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
N IP Y+ VA++ IY
Sbjct: 62 NEVIPEDLYRLVAEVFAFIYRL 83
>gi|301303006|ref|ZP_07209133.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 124-1]
gi|300841670|gb|EFK69430.1| surface presentation of antigens protein SpaS domain protein
[Escherichia coli MS 124-1]
Length = 155
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +
Sbjct: 4 KTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDHN 61
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ + D + + + +IP LL+ M I Q L VK F
Sbjct: 62 AKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDS 115
Query: 130 VSLREGIKRIYSINNLVNFMK 150
++ G+KRI+ + + F+K
Sbjct: 116 LNPVNGLKRIFGLKTVKEFVK 136
>gi|258404776|ref|YP_003197518.1| hypothetical protein Dret_0648 [Desulfohalobium retbaense DSM 5692]
gi|257797003|gb|ACV67940.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
Length = 89
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y ++++DAP +VA GQ +A+++ A E ++P+ E+P L L QVP+ IP
Sbjct: 9 AVALKYERSKDDAPRVVASGQGRLAERILATAEEADVPLREDPDLLEVL-AQVPVGDEIP 67
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA+++ +Y
Sbjct: 68 EDLYQAVAEILAFVYRL 84
>gi|257092546|ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045070|gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 108
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
TNP A+AL Y + AP +VAKG+ L+A+++ A+EH + + E L SL QV
Sbjct: 6 TNPLKNAVALAY-SQTDAAPRVVAKGRGLVAEQIIARAHEHGVYVHESAELV-SLLLQVD 63
Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
++ IPP Y AVA+L+ +Y +
Sbjct: 64 LDQHIPPQLYLAVAELLAWLYRLE 87
>gi|213855713|ref|ZP_03383953.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 93
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
AKG LIA ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++
Sbjct: 1 AKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 60
Query: 353 K 353
K
Sbjct: 61 K 61
>gi|222055862|ref|YP_002538224.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
gi|221565151|gb|ACM21123.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
Length = 106
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y + AP +VAKG + A+ + +A E+ + + E P L L K V
Sbjct: 6 NDLKKAVALAYNPAGDYAPRVVAKGCGVTAEAIIALARENGVYVHESPDLVNLLLK-VDQ 64
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y+AVA+L+ +Y +
Sbjct: 65 DRYIPPELYRAVAELLAWLYQLE 87
>gi|86749459|ref|YP_485955.1| type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris HaA2]
gi|86572487|gb|ABD07044.1| type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris HaA2]
Length = 89
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ I K+ ++A EHN+PI E LA +L V +
Sbjct: 8 QIAVALYYDKG--GAPRVVAKGRGTIGAKIIEVAKEHNVPIEENEVLAGAL-SHVELGDE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 65 IPEELYKAVAEVLVFVLKL 83
>gi|226313194|ref|YP_002773088.1| hypothetical protein BBR47_36070 [Brevibacillus brevis NBRC 100599]
gi|226096142|dbj|BAH44584.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 96
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y +AP +VAKG+ +A + K A EH+IP+ E+PSL L ++ ++
Sbjct: 12 KQAVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVL-GKLDLDQQ 70
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP Y+ VA+++ +Y
Sbjct: 71 IPPELYQVVAEILAFVYRI 89
>gi|319789483|ref|YP_004151116.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
gi|317113985|gb|ADU96475.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
Length = 92
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + + AP +VAKG+ ++A+K+ +IA +P+ + L L QV + + IP
Sbjct: 6 AAALKYERGKMRAPRVVAKGEGVVAEKIVEIARRSGVPVLQNRGLVEFLL-QVDLGAEIP 64
Query: 336 PVFYKAVAQLIYKIYH 351
P Y+AVA+L+ +Y
Sbjct: 65 PELYRAVAELLAYVYR 80
>gi|207109322|ref|ZP_03243484.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
HPKX_438_CA4C1]
Length = 134
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + +
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
+L + + L L+ L++P L++ ++ S ++Q +
Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114
Query: 121 NHVKPSFKRVSLREGIKRIY 140
++P F +++ G+K ++
Sbjct: 115 KVIEPKFSKINPINGVKNLF 134
>gi|304404230|ref|ZP_07385892.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
gi|304347208|gb|EFM13040.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
Length = 104
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
TN A+AL+Y E APV++AKG+ +A+ + A E+ +PI E+ SL L ++
Sbjct: 14 TNQARKAVALKYEPGERSAPVVIAKGKGHLAEAIVAKAAENGVPIQEDSSLVEVL-SKLD 72
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
I+ IP Y VA+++ +Y
Sbjct: 73 IDQEIPQELYALVAEILSFVYR 94
>gi|300982208|ref|ZP_07175920.1| conserved domain protein [Escherichia coli MS 200-1]
gi|300307278|gb|EFJ61798.1| conserved domain protein [Escherichia coli MS 200-1]
Length = 149
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 6/150 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++
Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L + D + I+ + L A ++P + ++ I S ++ L
Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGWYLAE 117
Query: 121 NHVK---PSFKRVSLREGIKRIYSINNLVN 147
N P+ R G R + +
Sbjct: 118 NPCSRSFPNSTRYRALNGCSRHRLARSCLR 147
>gi|239826600|ref|YP_002949224.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
gi|239806893|gb|ACS23958.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
Length = 90
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ I
Sbjct: 3 NKEKQAVALSYDSNVHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEI 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
N IP Y VA+L IY
Sbjct: 62 NETIPEDLYYLVAELFAFIYRL 83
>gi|92117130|ref|YP_576859.1| type III secretion protein [Nitrobacter hamburgensis X14]
gi|91800024|gb|ABE62399.1| type III secretion protein [Nitrobacter hamburgensis X14]
Length = 89
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ + K+ ++A EH+IPI E LA +L V +
Sbjct: 8 QVAVALHYDKGS-GAPRVVAKGRGSLGAKIIEVAREHDIPIEENEVLAGAL-SHVELGDE 65
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 66 IPSELYKAVAEVLVFVLRL 84
>gi|253996297|ref|YP_003048361.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
gi|253982976|gb|ACT47834.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
Length = 119
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NP A+AL Y + AP +VAKG+ LIA+++ A +H++ + E L +L QV +
Sbjct: 25 NPNQQAIALTYATG-DYAPRVVAKGRGLIAEQIIARAKQHDVFVHESKDLV-ALLMQVDL 82
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y+A+A+++ +Y +
Sbjct: 83 DDHIPPTLYQAIAEILSWLYRME 105
>gi|149183637|ref|ZP_01862054.1| flagellar biosynthesis [Bacillus sp. SG-1]
gi|148848654|gb|EDL62887.1| flagellar biosynthesis [Bacillus sp. SG-1]
Length = 94
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
N A+AL+Y + AP +VAKG+ LIA+ + + A EH +P+ E+ +L L +
Sbjct: 6 GNKRKQAIALQYESEKQQAPKVVAKGKGLIAENILEKAREHGVPVQEDRNLV-ELLGNLD 64
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
IN +IP Y+AVA++ +Y
Sbjct: 65 INESIPEELYQAVAEVFAFLYR 86
>gi|71906417|ref|YP_284004.1| flagellar biosynthetic protein [Dechloromonas aromatica RCB]
gi|71846038|gb|AAZ45534.1| possible flagellar biosynthetic protein [Dechloromonas aromatica
RCB]
Length = 93
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+PT A+AL Y + AP +VAKG+ LIA+++ A EH + + E P L +L QV +
Sbjct: 7 DPTREAIALAY-SQTDAAPRVVAKGKGLIAEQIIARAKEHGVYVHESPELV-ALLTQVDL 64
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y A+A+L+ +Y +
Sbjct: 65 DEHIPPQLYIAIAELLAWLYRIE 87
>gi|167630262|ref|YP_001680761.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
gi|167593002|gb|ABZ84750.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
Length = 99
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY + + AP ++A G+ +A+K+ +IA E IP++E+P+L + L ++ + IP
Sbjct: 15 AVALRYDPSADAAPKVIATGKGHLARKILEIAREKEIPVYEDPTLVQ-LLSKLDLGVEIP 73
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ VA+++ +Y
Sbjct: 74 PELYRMVAEVLAFVYRL 90
>gi|313673501|ref|YP_004051612.1| type iii secretion exporter [Calditerrivibrio nitroreducens DSM
19672]
gi|312940257|gb|ADR19449.1| type III secretion exporter [Calditerrivibrio nitroreducens DSM
19672]
Length = 87
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
ALRY Q ++ AP +VAKG+ +IA+K+ + A EHN+ I E+P L +L+K + I IP
Sbjct: 7 VTALRYDQEKDSAPKVVAKGRGIIAEKILEKAKEHNVLIKEDPDLLEALYK-LDIYQEIP 65
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ ++Y
Sbjct: 66 ENLYRVVAEILSEVYRI 82
>gi|89094428|ref|ZP_01167368.1| probable flagellar biosynthesis-related protein [Oceanospirillum
sp. MED92]
gi|89081320|gb|EAR60552.1| probable flagellar biosynthesis-related protein [Oceanospirillum
sp. MED92]
Length = 109
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y Q AP++VAKG IA+++ +A E+ I I E P L L + + +
Sbjct: 13 QKAIALKYDQELGKAPLIVAKGMGEIAEQIINLAEENGIHIHESPELVEVLIR-LELGDE 71
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+A+A++I Y K
Sbjct: 72 IPESLYRAIAEVIAFAYSLK 91
>gi|192291990|ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
gi|316933568|ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
gi|192285739|gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
gi|315601282|gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
Length = 91
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL Y AP +VAKG+ ++ K+ ++A +H+IPI E LA +L V + I
Sbjct: 10 LAIALHYD--YAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVELGDEI 66
Query: 335 PPVFYKAVAQLIYKIYHK 352
P YKAVA+++ +
Sbjct: 67 PEELYKAVAEVLAFVLRL 84
>gi|30250018|ref|NP_842088.1| flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718]
gi|30139125|emb|CAD85989.1| possible similar to flagellar biosynthetic protein [Nitrosomonas
europaea ATCC 19718]
Length = 119
Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y AP +VAKG+ LIA+++ + A E + + E L +L QV ++
Sbjct: 26 PIPGAVALAYHSG-MTAPQVVAKGRGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDLD 83
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
IPP Y AVA+L+ +Y +
Sbjct: 84 DHIPPELYIAVAELLAWLYRLE 105
>gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille]
gi|151283317|gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 95
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T P A+AL Y Q+ + AP +VAKG+ IA+++ + A EH + I E L +L QV
Sbjct: 4 TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
++ IPP Y+AVA+L+ +Y
Sbjct: 62 LDEHIPPALYRAVAELLAWLYR 83
>gi|83647067|ref|YP_435502.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Hahella chejuensis KCTC 2396]
gi|83635110|gb|ABC31077.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Hahella
chejuensis KCTC 2396]
Length = 116
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y + AP + AKG+ +A+++ IA EH +P++E P L RSL Q+ +
Sbjct: 19 NDIQQAIALFYDGKQ--APKVSAKGEADLAEEIIAIAREHGVPLYENPELVRSL-AQLDL 75
Query: 331 NSAIPPVFYKAVAQLIYKIY 350
IP + Y+ +A++I Y
Sbjct: 76 GDEIPELLYRVIAEIIAFAY 95
>gi|289811230|ref|ZP_06541859.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 93
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V
Sbjct: 1 MRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEV 60
Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
IP ++ VA L+ +
Sbjct: 61 ERGDKIPETLFEPVAALLRMVMKI 84
>gi|27380472|ref|NP_772001.1| hypothetical protein bsl5361 [Bradyrhizobium japonicum USDA 110]
gi|27353636|dbj|BAC50626.1| bsl5361 [Bradyrhizobium japonicum USDA 110]
Length = 87
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+++P+ A+AL Y + APV+VAKG+ I +K+ +IA ++IPI E LA +L +V
Sbjct: 1 MSDPSKLAIALHYEKGS-GAPVVVAKGKGTIGEKIVEIAKANDIPIEENEILAGAL-SKV 58
Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
+ IPP YKAVA+++ +
Sbjct: 59 ELGEEIPPDLYKAVAEVLVFVLRL 82
>gi|254691438|ref|ZP_05154692.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
870]
Length = 146
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 70/146 (47%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P +
Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
L L+ L L + L+L+ ++P ++ + GI + Q P
Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLV 146
++P R+S +G +RI+ V
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQV 146
>gi|206889780|ref|YP_002247874.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741718|gb|ACI20775.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 88
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y ++ AP +VAKG+ IA+K+ ++A +H +P+ E+ +L L ++ I IP
Sbjct: 7 AVALKYEAEKDAAPKVVAKGRGFIAQKIIELARQHGVPMKEDEALVEVL-SKLDIYEEIP 65
Query: 336 PVFYKAVAQLIYKIYHKK 353
YKAVA+++ +Y K
Sbjct: 66 VELYKAVAEILVFVYQVK 83
>gi|39936268|ref|NP_948544.1| Type III secretion proteins related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris CGA009]
gi|39650123|emb|CAE28646.1| Type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris CGA009]
Length = 91
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP +VAKG+ ++ K+ ++A +H+IPI E LA +L V +
Sbjct: 9 ALAIALHYD--YAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVELGDE 65
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 66 IPEELYKAVAEVLAFVLRL 84
>gi|91977593|ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris BisB5]
gi|91684049|gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Rhodopseudomonas palustris BisB5]
Length = 88
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ I K+ ++A +H+IPI E LA +L V +
Sbjct: 8 QIAVALHYDR--AGAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGAL-SHVELGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 65 IPEELYKAVAEVLAFVLKL 83
>gi|85859194|ref|YP_461396.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
gi|85722285|gb|ABC77228.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
Length = 92
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A A+RY T + AP + AKG +A+K+ ++A ++NIP+ +P L + L + + I+
Sbjct: 5 QLAAAIRYDGTVDVAPKVTAKGCGFVAEKIIELAQKNNIPVRNDPGLVQILCR-LDIDEQ 63
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +Y
Sbjct: 64 IPEDLYKAVAEILAYVYSI 82
>gi|313896280|ref|ZP_07829833.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975079|gb|EFR40541.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 107
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M A + A+A+RY ++ AP + AKG++ +A ++ A ++ IP+++
Sbjct: 6 MPDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSFVADRILAEAKKNGIPVYQNK 65
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
SL L + I+ IPP Y+ +A+++ +Y
Sbjct: 66 SLVNMLMA-LEIDREIPPELYRTIAEVLAHVYRI 98
>gi|258592464|emb|CBE68773.1| Cytoplasmic domain of flagellar protein FhlB-like protein protein
[NC10 bacterium 'Dutch sediment']
Length = 104
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y EN AP +VA G+ IA+++ +A H I + ++P L L ++ I A
Sbjct: 12 QQAVALKYEAGENGAPEVVASGRGRIAEQIIALAKAHGIYVKQDPELVEVL-SRLDIGDA 70
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP Y VA+++ +Y
Sbjct: 71 IPPELYAVVAEILAFVYR 88
>gi|218515300|ref|ZP_03512140.1| flagellar biosynthesis protein FlhB [Rhizobium etli 8C-3]
Length = 151
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+++K DA +GN P SRE S+F++ILA IYL+FF + ++ L
Sbjct: 31 DDDKDSKTEAPTARKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 90
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
+ Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L +
Sbjct: 91 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 150
>gi|260887870|ref|ZP_05899133.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
gi|330838735|ref|YP_004413315.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
gi|260862376|gb|EEX76876.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
gi|329746499|gb|AEB99855.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
Length = 110
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY + AP +VAKG+ +A+ + A ++ IP+++ SL L + ++
Sbjct: 22 QRAVALRYAPEKQHAPKVVAKGRGFVAENILAAAQKNAIPVYQNKSLVNMLMA-LELDRE 80
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA+++ +Y
Sbjct: 81 IPPELYRAVAEVLAYVYRI 99
>gi|126654068|ref|ZP_01725894.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
gi|126589448|gb|EAZ83595.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
Length = 100
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L L Q+ +N +IP
Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVH-LLGQLDLNESIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA++ IY
Sbjct: 70 EELYQAVAEVFAFIYRL 86
>gi|297570293|ref|YP_003691637.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
gi|296926208|gb|ADH87018.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
Length = 104
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+ALRY + AP +VAKG +A+K+ IA EH +PI E+ L + ++ +
Sbjct: 20 PRKKAVALRYDAEQQSAPQMVAKGSGTVAEKLIAIAREHGVPIHEDADLT-EILSRLDLY 78
Query: 332 SAIPPVFYKAVAQLIYKIYH 351
IPP Y VA+++ IY
Sbjct: 79 QEIPPETYLLVAEILAFIYR 98
>gi|154686024|ref|YP_001421185.1| YlqH [Bacillus amyloliquefaciens FZB42]
gi|154351875|gb|ABS73954.1| YlqH [Bacillus amyloliquefaciens FZB42]
Length = 93
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + ++ AP +VA G+ +A+ + K A + +PI E+ +L L + + ++
Sbjct: 6 PLRRAVALHYDRQKDQAPKVVATGRGHVAENIIKEAEKAGVPIQEDRTLV-ELMRHLTVD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA++ +Y
Sbjct: 65 DQIPEALYETVAEIFSFVYRL 85
>gi|299135221|ref|ZP_07028412.1| type III secretion exporter [Afipia sp. 1NLS2]
gi|298590198|gb|EFI50402.1| type III secretion exporter [Afipia sp. 1NLS2]
Length = 91
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ IAKK+ ++A EH++ I E LA +L V I
Sbjct: 11 TLAVALHYDRK--GAPRVVAKGKGEIAKKIIEVASEHDVAIQENEVLAGAL-SNVEIGDE 67
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+AVA+++ +
Sbjct: 68 IPAELYRAVAEVLVFVMRL 86
>gi|229541105|ref|ZP_04430165.1| conserved hypothetical protein [Bacillus coagulans 36D1]
gi|229325525|gb|EEN91200.1| conserved hypothetical protein [Bacillus coagulans 36D1]
Length = 96
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + APV+ AKG+ +A+++ + A + N+PI ++P LA +L ++ IN AIP
Sbjct: 11 AVALQYSPDAHSAPVVKAKGKGDVARRIIEEAKKANVPIQQDPDLA-ALLGRLDINEAIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y AVA++ IY
Sbjct: 70 EELYAAVAEVFAMIYRL 86
>gi|157165363|ref|YP_001466488.1| FlhB domain-containing protein [Campylobacter concisus 13826]
gi|112800644|gb|EAT97988.1| FlhB domain protein [Campylobacter concisus 13826]
Length = 87
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y +++++AP ++A G IA K+ +A EH+IPI E+P L + +V ++ IP
Sbjct: 8 AVALGYNRSQDNAPKVLASGAGEIANKIISLAKEHDIPIKEDPDLI-EILSKVEVDQEIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKAVA++ +Y
Sbjct: 67 PNLYKAVAEIFSFLYKI 83
>gi|75675592|ref|YP_318013.1| type III secretion proteins, related to flagellar biosynthesis
protein FlhB [Nitrobacter winogradskyi Nb-255]
gi|74420462|gb|ABA04661.1| type III secretion protein, related to flagellar biosynthesis
protein FlhB [Nitrobacter winogradskyi Nb-255]
Length = 89
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ + K+ ++A EH+IPI + LA +L V +
Sbjct: 8 QVAVALHYDKGS-GAPRVVAKGRGSLGAKIIEVANEHDIPIEQNEVLADAL-SHVELGDE 65
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 66 IPAELYKAVAEVLVFVLRM 84
>gi|220934523|ref|YP_002513422.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219995833|gb|ACL72435.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 94
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + +AP + A G +A+++ +IA EH++P+ E+ L +L QVP+
Sbjct: 7 PPRKAVALHY--SGRNAPRVTASGVGQVAERILEIAREHDVPVHEDALLTAAL-SQVPLG 63
Query: 332 SAIPPVFYKAVAQLIYKIY 350
IP Y AVA+++ +Y
Sbjct: 64 DEIPENLYVAVAEVLAFVY 82
>gi|209884850|ref|YP_002288707.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
OM5]
gi|209873046|gb|ACI92842.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
OM5]
Length = 91
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ IA+K+ ++A EH++ I E LA +L V I
Sbjct: 11 TLAVALHYDRK--GAPRVVAKGKGEIARKIIEVAAEHDVAIEENEILAGAL-SNVEIGDE 67
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 68 IPAELYKAVAEVLIFVLRL 86
>gi|327398785|ref|YP_004339654.1| type III secretion exporter [Hippea maritima DSM 10411]
gi|327181414|gb|AEA33595.1| type III secretion exporter [Hippea maritima DSM 10411]
Length = 83
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY E++AP +VAKG+ +A K+ K A +H+I I ++P LA SL+K V +N IP
Sbjct: 8 AVALRYKNQEDNAPKVVAKGRGFLADKIEKTAKKHSIYIEKDPLLAESLYK-VKLNEEIP 66
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA+++ IY
Sbjct: 67 EELYEAVAKILAYIYS 82
>gi|85715097|ref|ZP_01046081.1| type III secretion protein [Nitrobacter sp. Nb-311A]
gi|85698012|gb|EAQ35885.1| type III secretion protein [Nitrobacter sp. Nb-311A]
Length = 89
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG + K+ ++A EH+IPI E LA +L V +
Sbjct: 8 QVAVALHYDKGS-GAPRVVAKGSGSLGAKIIEVAKEHDIPIEENEVLAGAL-SHVELGDE 65
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 66 IPAELYKAVAEVLVFVLRM 84
>gi|169827108|ref|YP_001697266.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
gi|168991596|gb|ACA39136.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
Length = 100
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP
Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA++ IY
Sbjct: 70 EELYQAVAEVFAFIYRL 86
>gi|50954412|ref|YP_061700.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950894|gb|AAT88595.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 295
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
AP +VAKG + +A ++R+ A +P+ ++ LAR+L + VP+ IP + VA ++
Sbjct: 209 SAPRVVAKGADFVATRIREEARSAGVPMVQDLPLARALHRDVPLGQPIPNEHFGQVAHVL 268
Query: 347 YKIYHKK 353
+ +
Sbjct: 269 AFVMMLR 275
>gi|299536764|ref|ZP_07050072.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
gi|298727776|gb|EFI68343.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
Length = 100
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP
Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA++ IY
Sbjct: 70 EELYQAVAEVFAFIYRL 86
>gi|119503687|ref|ZP_01625770.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
proteobacterium HTCC2080]
gi|119460749|gb|EAW41841.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
proteobacterium HTCC2080]
Length = 97
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
++ALRY ++ AP++VA G IA ++ A E +P+ E+P LA+ L QVP+ IP
Sbjct: 16 SVALRYDGSQ--APIVVATGSGEIADAIKAKAEESGVPVVEDPRLAQ-LLSQVPLGEEIP 72
Query: 336 PVFYKAVAQLIYKIYHKKI 354
Y+AVA+++ + ++
Sbjct: 73 AELYRAVAEVLVFVMQMEM 91
>gi|88704263|ref|ZP_01101977.1| FlhB domain protein [Congregibacter litoralis KT71]
gi|88701314|gb|EAQ98419.1| FlhB domain protein [Congregibacter litoralis KT71]
Length = 100
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M + R+ P + AL Y AP+LVAKG+N IA ++ ++A ++++PI ++
Sbjct: 1 MSDNDKRSQSSAKGPATQSAALSYSGE--GAPLLVAKGENAIADRIVELASQNDVPIVQD 58
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
L L Q+P+ +PP Y AVA+++ +Y
Sbjct: 59 GQLT-ELLCQIPLGEEVPPELYLAVAEVLAYVYRL 92
>gi|149376614|ref|ZP_01894374.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Marinobacter algicola DG893]
gi|149359132|gb|EDM47596.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Marinobacter algicola DG893]
Length = 100
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y APV+ A G + +A+++ +IA EHN+P++E P LA S+ ++ +N IP
Sbjct: 13 AVALKYDGE--RAPVIAASGTHELAEEIIRIAREHNVPLYENPELA-SILARLELNDEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ ++
Sbjct: 70 ETLYRVVAEILAFAFNL 86
>gi|320529139|ref|ZP_08030231.1| FlhB domain protein [Selenomonas artemidis F0399]
gi|320138769|gb|EFW30659.1| FlhB domain protein [Selenomonas artemidis F0399]
Length = 107
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M A + A+A+RY ++ AP + AKG++L+A ++ A ++ IP+++
Sbjct: 6 MMDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSLVADRILAEAKKNGIPVYQNK 65
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
SL L + I+ IPP Y+ +A+++ +Y
Sbjct: 66 SLVNMLMA-LEIDREIPPELYRTIAEVLAHVYRI 98
>gi|154175297|ref|YP_001407951.1| FlhB domain-containing protein [Campylobacter curvus 525.92]
gi|112802155|gb|EAT99499.1| FlhB domain protein [Campylobacter curvus 525.92]
Length = 87
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N AP ++A G IA K+ +A EH IPI E+P L + +V I+ IP
Sbjct: 8 AVALGYNREKNSAPKVLATGSGEIANKIISLAREHEIPIKEDPDLI-EILSKVEIDQEIP 66
Query: 336 PVFYKAVAQLIYKIYH 351
P YKAVA++ +Y
Sbjct: 67 PNLYKAVAEIFSFLYK 82
>gi|308273541|emb|CBX30143.1| hypothetical protein N47_D29520 [uncultured Desulfobacterium sp.]
Length = 92
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+ + N + A+ALRY+ AP ++A G+ +A+K+ ++A EHNI I +P L L
Sbjct: 1 MTLKNELNKAVALRYVPEREQAPRVIATGKGKLAEKIIQVAKEHNIHIHSDPDLVEML-S 59
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHK 352
Q+ + IP YK VA+++ +Y
Sbjct: 60 QLKPDQEIPSDLYKVVAEILVFVYSL 85
>gi|296135643|ref|YP_003642885.1| type III secretion exporter [Thiomonas intermedia K12]
gi|295795765|gb|ADG30555.1| type III secretion exporter [Thiomonas intermedia K12]
Length = 108
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++
Sbjct: 16 RQAVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQ 74
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y AVA+L+ ++ +
Sbjct: 75 IPPALYTAVAELLAWLWRLE 94
>gi|226939559|ref|YP_002794632.1| flagellar biosynthesis-related protein [Laribacter hongkongensis
HLHK9]
gi|226714485|gb|ACO73623.1| probable flagellar biosynthesis-related protein [Laribacter
hongkongensis HLHK9]
Length = 114
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP + AKGQ +A ++ + A + + + E P L L QV ++S
Sbjct: 9 RSAVALAYREGSV-APKVTAKGQGELALRIIERAQQAGVFVHESPQLVN-LLMQVDLDSQ 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+++ +Y +
Sbjct: 67 IPPELYQAVAEVLAFVYWLE 86
>gi|329929329|ref|ZP_08283082.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
gi|328936698|gb|EGG33141.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
Length = 104
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L + ++ ++ IP
Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALV-EILSKLDLDQQIP 75
Query: 336 PVFYKAVAQLIYKIYH 351
Y+ VA+++ +Y
Sbjct: 76 EELYQLVAEVLTYVYR 91
>gi|308068636|ref|YP_003870241.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
gi|305857915|gb|ADM69703.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
Length = 99
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y E++AP++VAKG +A + + A EH +P+ E+ +L L ++ ++ IP
Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRVADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ IY
Sbjct: 74 AELYQLVAEVLTYIYQM 90
>gi|91776332|ref|YP_546088.1| putative flagellar biosynthetic protein [Methylobacillus
flagellatus KT]
gi|91710319|gb|ABE50247.1| putative flagellar biosynthetic protein [Methylobacillus
flagellatus KT]
Length = 102
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKG+ +IA+++ A EH + + E L +L QV ++
Sbjct: 8 QQAIALAYESG-DFAPRVVAKGRGVIAEQIIAKAKEHGVFVHESRELL-ALLMQVDLDDH 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+A+A+++ +Y +
Sbjct: 66 IPPALYQAIAEILAWLYRLE 85
>gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
gi|300074164|gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
Length = 114
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y ++ AP +VAKG+ L+A+ + A E + + E L SL QV ++
Sbjct: 7 PLQNAVALAYNASQA-APQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVELD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
IPP Y+ VA+L+ +Y +
Sbjct: 65 QQIPPALYRTVAELLAWLYRIE 86
>gi|197118783|ref|YP_002139210.1| FlhB cytoplasmic domain-containing protein [Geobacter bemidjiensis
Bem]
gi|197088143|gb|ACH39414.1| uncharacterized FlhB cytoplasmic domain protein-like protein
[Geobacter bemidjiensis Bem]
Length = 100
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV +
Sbjct: 6 SEMKRAVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDL 63
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+S IPP Y+AVA+L+ +Y
Sbjct: 64 DSEIPPELYQAVAELLAWLYSL 85
>gi|322419281|ref|YP_004198504.1| type III secretion exporter [Geobacter sp. M18]
gi|320125668|gb|ADW13228.1| type III secretion exporter [Geobacter sp. M18]
Length = 94
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+A+ Y E AP ++AKG + A+ + +A EH + + + P L ++ QV +++
Sbjct: 9 KRAVAMAYSPEEGSAPRVIAKGSGISAEAIISLAREHGVYVHQSPELV-AMLMQVDLDAE 67
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA+L+ +Y
Sbjct: 68 IPPELYQAVAELLAWLYSL 86
>gi|90424888|ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
gi|90106902|gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
Length = 88
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
P A+AL Y + AP ++AKG+ I K+ ++A H+IPI E LA +L +V I
Sbjct: 5 GPNQIAVALHYDR--TGAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGAL-SKVEI 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
IP YKAVA+++ +
Sbjct: 62 GDEIPQELYKAVAEVLVFVLRL 83
>gi|302670908|ref|YP_003830868.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316]
gi|302395381|gb|ADL34286.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316]
Length = 98
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
A + A+AL Y E+ AP ++A G+ +A K+ + A E+ IP+ E+ LA +
Sbjct: 1 MADNSKKDKVKTAVALGYDPNEDGAPKVIASGKGALADKIIEQAKENKIPVHEDDKLADT 60
Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKI 349
L ++ I IPP Y+ VA+++ +
Sbjct: 61 L-SRLEIGEMIPPELYEVVAEVLVFV 85
>gi|261408003|ref|YP_003244244.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
gi|261284466|gb|ACX66437.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
Length = 104
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L + ++ ++ IP
Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALV-EILSKLDLDQQIP 75
Query: 336 PVFYKAVAQLIYKIYH 351
Y+ VA+++ +Y
Sbjct: 76 EELYQLVAEVLTYVYR 91
>gi|134095072|ref|YP_001100147.1| putative part of export apparatus for flagellar proteins (partial)
[Herminiimonas arsenicoxydans]
Length = 97
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + AP +VAKG+ LIA+++ + A EH + I E L +L QV ++
Sbjct: 9 PPPSAVALAYQSG-DSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVELD 66
Query: 332 SAIPPVFYKAVAQLIYKIYH 351
IPP Y+AVA+L+ +Y
Sbjct: 67 DNIPPALYRAVAELLAWLYR 86
>gi|225849513|ref|YP_002729678.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644207|gb|ACN99257.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 87
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + ++ AP +VAKG+ IA+K+ ++A ++ + I E+ L L + + IP
Sbjct: 8 AVALKYERYKDTAPKVVAKGKGEIAQKIIEVARQYGVYIKEDKDLVEVL-SGLDLYQEIP 66
Query: 336 PVFYKAVAQLIYKIYHKK 353
YK VA+L+ IY K
Sbjct: 67 EDLYKVVAELLAFIYKTK 84
>gi|77918709|ref|YP_356524.1| hypothetical protein Pcar_1105 [Pelobacter carbinolicus DSM 2380]
gi|77544792|gb|ABA88354.1| putative cytoplasmic domain of flagellar protein [Pelobacter
carbinolicus DSM 2380]
Length = 90
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N + A+AL Y + APV+VA G+ +A+K+ A E + + +P L + +VP+
Sbjct: 5 NRQNKAVALTYQKASGKAPVVVASGKGAVAEKILATAGEAGVEVVRDPDLV-EILDKVPL 63
Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
IP Y+AVA+++ +Y
Sbjct: 64 GQEIPEELYQAVAEILAFVYR 84
>gi|292670874|ref|ZP_06604300.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
gi|292647495|gb|EFF65467.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
Length = 110
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+
Sbjct: 23 QRAVAIKYDVKNDQAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDRE 81
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP Y+ +A+++ +Y
Sbjct: 82 IPPELYRTIAEVLAHVYRI 100
>gi|294339812|emb|CAZ88175.1| putative Uncharacterized homolog of the cytoplasmic domain of
flagellar protein FhlB [Thiomonas sp. 3As]
Length = 108
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++
Sbjct: 16 RQAVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQ 74
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y AVA+L+ ++ +
Sbjct: 75 IPPALYTAVAELLAWLWRLE 94
>gi|332798509|ref|YP_004460008.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
gi|332696244|gb|AEE90701.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
Length = 101
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y E++AP ++A G+ +IA+K+ ++A EHNI I+++P+L +L Q+ + IP
Sbjct: 13 ATALKYNSAEDNAPKIIASGKGIIAEKILELAQEHNIAIYKDPALVEAL-VQLEVGQEIP 71
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA+++ IY
Sbjct: 72 LELYQAVAEILAFIYS 87
>gi|253700436|ref|YP_003021625.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Geobacter sp. M21]
gi|251775286|gb|ACT17867.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Geobacter sp. M21]
Length = 92
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV +
Sbjct: 6 SEMKRAVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDL 63
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+S IPP Y+AVA+L+ +Y
Sbjct: 64 DSEIPPELYQAVAELLAWLYSL 85
>gi|114330763|ref|YP_746985.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
eutropha C91]
gi|114307777|gb|ABI59020.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
eutropha C91]
Length = 113
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
+ + + +++ + A IT P A+AL Y AP +VAKGQ LIA+++ + A
Sbjct: 5 ELNQQENQSGPIDSLTTAERAIT-PG--AVALTYHSG-MTAPQVVAKGQGLIAEEIIRRA 60
Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
E + + E L +L QV ++ IPP Y A+A+L+ +Y +
Sbjct: 61 QEAGVYVHESAELV-ALLMQVDLDEHIPPELYVAIAELLAWLYQLE 105
>gi|310641524|ref|YP_003946282.1| flagellar protein fhlb-like protein [Paenibacillus polymyxa SC2]
gi|309246474|gb|ADO56041.1| Flagellar protein FhlB-like protein [Paenibacillus polymyxa SC2]
Length = 99
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y E++AP++VAKG IA + + A EH +P+ E+ +L L ++ ++ IP
Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRIADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ IY
Sbjct: 74 AELYQLVAEVLTYIYQM 90
>gi|295111515|emb|CBL28265.1| Flagellar biosynthesis pathway, component FlhB [Synergistetes
bacterium SGP1]
Length = 95
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y + +AP + A+G+ IA+K+ + A E ++P+ E+ +L +L + +
Sbjct: 7 DQAVALKYDRETMNAPTVTARGEGFIARKIVERALEADVPVLEDAALVSALL-SLELGEE 65
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y VA+++ +Y
Sbjct: 66 IPAELYTVVARVLTWVYR 83
>gi|302392093|ref|YP_003827913.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
gi|302204170|gb|ADL12848.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
Length = 96
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y +N+AP +VAKG N +AKK+ A E++IPI ++ +L ++L Q+ + I
Sbjct: 14 AAALKYDPEQNNAPQVVAKGSNEVAKKIIAKAKENDIPIHQDDTLVKNLI-QLDLEEEIT 72
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ IY
Sbjct: 73 GELYQIVAEVLSFIYQL 89
>gi|121533785|ref|ZP_01665612.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
carboxydivorans Nor1]
gi|121307776|gb|EAX48691.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
carboxydivorans Nor1]
Length = 96
Score = 99 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY Q AP +VAKG +A+++ A +H +P++++ +LA SL V ++
Sbjct: 10 KQAIALRYDQQTQQAPKVVAKGSGYVAEQILATAAQHAVPVYKDTALA-SLLMAVELDKE 68
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP Y+ VA+++ IY
Sbjct: 69 IPPELYQVVAEVLAYIYR 86
>gi|206603123|gb|EDZ39603.1| Probable flagellar biosynthesis protein [Leptospirillum sp. Group
II '5-way CG']
Length = 100
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y ++DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP
Sbjct: 6 NKGSIAIALGYHPEKDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAEFLIR-VPP 64
Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
IP Y+AVA L+ +Y
Sbjct: 65 GHPIPAELYQAVALLLAYLYR 85
>gi|148645122|gb|ABR01085.1| FlhB [uncultured Geobacter sp.]
Length = 89
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 58/89 (65%)
Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
QE+KDE K S G+P +K +QK R +M + A +++TNPTHYA+AL+Y + +
Sbjct: 1 QEVKDEHKNSEGDPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRFKM 60
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
APV++ KG + +A +++ +A E+N+ +
Sbjct: 61 AAPVVLFKGVDQMALQIKIVARENNVMLV 89
>gi|225849676|ref|YP_002729910.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
gi|225646306|gb|ACO04492.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
Length = 92
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY + +NDAP +VAKGQ LIA+++ +IA E+ I I ++ L + + Q+ I IP
Sbjct: 7 AVALRYDREKNDAPEVVAKGQGLIAERIVEIAREYGIEIKQDRELVQ-ILSQLDIKQEIP 65
Query: 336 PVFYKAVAQLIYKIYH 351
P YKAVA+++ IY
Sbjct: 66 PELYKAVAEILIFIYR 81
>gi|289208366|ref|YP_003460432.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
gi|288943997|gb|ADC71696.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
Length = 119
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL + + AP + A G + A+++ +IA EH IP+ ++P L +L QVP+ +
Sbjct: 24 QAVALEWDRQ--RAPRITASGSGVTAEQILRIAEEHGIPLHQDPGLTEAL-AQVPLGEEV 80
Query: 335 PPVFYKAVAQLIYKIYHK 352
P Y AVA+++ I+
Sbjct: 81 PESLYVAVAEVLAFIFVL 98
>gi|52080210|ref|YP_079001.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
gi|52785587|ref|YP_091416.1| YlqH [Bacillus licheniformis ATCC 14580]
gi|319646011|ref|ZP_08000241.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
gi|52003421|gb|AAU23363.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
gi|52348089|gb|AAU40723.1| YlqH [Bacillus licheniformis ATCC 14580]
gi|317391761|gb|EFV72558.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
Length = 93
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
P A+AL Y + ++ AP +VAKG A+K+ + A + +PI E+ +L L + + +
Sbjct: 5 VPLRRAVALHYDEMKDKAPKVVAKGSGYTAEKIIEEAQKAGVPIQEDATLV-ELMRHLEL 63
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+ IP Y+ VA++ +Y
Sbjct: 64 DDHIPEALYEIVAEIFSFVYTL 85
>gi|251797459|ref|YP_003012190.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
gi|247545085|gb|ACT02104.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
Length = 101
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + APV+ AKG+ +A ++ + A EH++P+ ++ SL L ++ ++ +IP
Sbjct: 17 AVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVL-SKLDVDQSIP 75
Query: 336 PVFYKAVAQLIYKIYH 351
P Y VA+++ +Y
Sbjct: 76 PELYTLVAEILSFVYR 91
>gi|296132572|ref|YP_003639819.1| type III secretion exporter [Thermincola sp. JR]
gi|296031150|gb|ADG81918.1| type III secretion exporter [Thermincola potens JR]
Length = 100
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y DAP +VA GQ L+A+ + ++A E+NIPI E+P L +L + + + IP
Sbjct: 19 AVALEYKPGLQDAPQVVATGQGLVAENIVRLAKEYNIPIEEDPVLVDAL-RVLQLGEEIP 77
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ VA+++ +
Sbjct: 78 PELYRVVAEILVFVMDL 94
>gi|82702472|ref|YP_412038.1| flagellar biosynthetic protein-like protein [Nitrosospira
multiformis ATCC 25196]
gi|82410537|gb|ABB74646.1| flagellar biosynthetic protein-like protein [Nitrosospira
multiformis ATCC 25196]
Length = 101
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N + A+AL Y +T + AP +VAKG+ L+A+ + + A H + + E P L SL QV +
Sbjct: 5 NRSEAAVALAY-RTGDHAPQVVAKGRGLVAENIIREARRHGVFVHESPELV-SLLIQVDL 62
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y+AVA+L+ +Y +
Sbjct: 63 DQHIPPQLYRAVAELLVWLYKME 85
>gi|117926314|ref|YP_866931.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
sp. MC-1]
gi|117610070|gb|ABK45525.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
sp. MC-1]
Length = 100
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY ++ +P + A G+ +A+ + K A E ++P+ E+P L L +++P+ S
Sbjct: 14 KRAVALRYRLGKDTSPRVTASGRGRLAETILKRAKEGDVPLLEDPDLVH-LLEKIPVGSE 72
Query: 334 IPPVFYKAVAQLIYKIYHK 352
+PP Y+AVA+++ IY
Sbjct: 73 VPPQLYQAVAEVLAYIYRI 91
>gi|95929897|ref|ZP_01312638.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
acetoxidans DSM 684]
gi|95134193|gb|EAT15851.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
acetoxidans DSM 684]
Length = 92
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+P A+A++Y + DAP++VA G+ +A+ + + A + + I +P L L ++P+
Sbjct: 4 DPVKKAVAVKYDKEVADAPLIVASGKGQLAENIIQAAEKAGLEISHDPDLV-ELLAKIPV 62
Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
S IP Y+AVA+++ +Y
Sbjct: 63 GSEIPSELYQAVAEILAYVYR 83
>gi|311068129|ref|YP_003973052.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
gi|310868646|gb|ADP32121.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
Length = 93
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + ++ AP ++A G+ IA+ + A + +PI E+ +L L + + ++
Sbjct: 6 PLRKAVALHYDEQKDKAPKVIATGRGHIAENIIAEAKKAGVPIQEDRTLV-ELMRHLTVD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA++ +Y
Sbjct: 65 DQIPEALYETVAEIFSFVYKL 85
>gi|258511352|ref|YP_003184786.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478078|gb|ACV58397.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 85
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++
Sbjct: 4 AERAVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQ 62
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+++ IY +
Sbjct: 63 VIPPELYQAVAEILAYIYRFR 83
>gi|224826964|ref|ZP_03700062.1| putative flagellar biosynthesis-related protein [Lutiella
nitroferrum 2002]
gi|224600797|gb|EEG06982.1| putative flagellar biosynthesis-related protein [Lutiella
nitroferrum 2002]
Length = 110
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP +VAKG +A+++ + A E + + + P+L SL QV ++
Sbjct: 11 RSAIALSYQDG-ARAPKVVAKGYGELAERIIERAQEAGVFVHDSPALV-SLLMQVDLDQQ 68
Query: 334 IPPVFYKAVAQLIYKIY 350
IPP Y+AVA+++ +Y
Sbjct: 69 IPPELYRAVAEVLAFVY 85
>gi|308173570|ref|YP_003920275.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7]
gi|307606434|emb|CBI42805.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
DSM 7]
gi|328553497|gb|AEB23989.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens TA208]
gi|328911711|gb|AEB63307.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
LL3]
Length = 93
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + ++ AP ++A G+ +A+ + K A + +PI E+ +L L + + ++
Sbjct: 8 RRAVALHYDRQKDQAPKVIATGRGHVAENIIKEAEKAGVPIQEDRTLV-ELMRHLTVDDQ 66
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+ VA++ +Y
Sbjct: 67 IPEALYETVAEIFSFVYRL 85
>gi|218288274|ref|ZP_03492573.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218241633|gb|EED08806.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 85
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++
Sbjct: 4 AKRAVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQ 62
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+++ IY +
Sbjct: 63 VIPPELYQAVAEILAYIYRFR 83
>gi|195953347|ref|YP_002121637.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195932959|gb|ACG57659.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 87
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + +++AP LVAKG+ IA+K+ + A EH +P+ ++ L + + + I IP
Sbjct: 8 AIALKYERGKDNAPRLVAKGKGYIAQKIIEFAKEHQVPVIQDEKLLSAAY-NLDIYEEIP 66
Query: 336 PVFYKAVAQLIYKIYHKK 353
P YKAVA+++ + K
Sbjct: 67 PELYKAVAKVLVFVEKLK 84
>gi|304436819|ref|ZP_07396785.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304370191|gb|EFM23850.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 103
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP
Sbjct: 18 AVAIKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ +A+++ +Y
Sbjct: 77 PELYRTIAEVLAHVYRI 93
>gi|83589852|ref|YP_429861.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
gi|83572766|gb|ABC19318.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
Length = 94
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY E+ AP +VA G+ IA K+ A E +PI + LA L + + S IP
Sbjct: 10 AVALRYNSEEDKAPRVVASGRGAIADKIITAAREAGVPIHRDTHLAEML-AGLDVGSEIP 68
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ IY
Sbjct: 69 VELYQMVAEILVFIYSL 85
>gi|121601225|ref|YP_994245.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia mallei SAVP1]
gi|121230035|gb|ABM52553.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei SAVP1]
Length = 150
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAK 294
S P + + A S + + T N A L Y + AP +VAK
Sbjct: 16 SEAQPARRVGRAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAK 73
Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
G L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L+ +Y +
Sbjct: 74 GYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 131
>gi|169831979|ref|YP_001717961.1| flagellar protein FhlB-like cytoplasmic domain-containing protein
[Candidatus Desulforudis audaxviator MP104C]
gi|169638823|gb|ACA60329.1| flagellar protein FhlB-like cytoplasmic domain protein [Candidatus
Desulforudis audaxviator MP104C]
Length = 117
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL Y + P +VA G+ L A ++ ++A +P++ +P LA +L + ++
Sbjct: 17 RVAAALTYEDGPDAVPRVVAVGKGLFAARIEEVARASGVPVYRDPQLAWTL-AGLGLDRE 75
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+ VAQ+I +Y+ +
Sbjct: 76 IPPELYQVVAQVIAWVYYLE 95
>gi|291613084|ref|YP_003523241.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
gi|291583196|gb|ADE10854.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
Length = 113
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + + AP +VA G+ LIA+ + + A EH + + E L L QV ++
Sbjct: 11 QLAVALAY-RNGDAAPKVVASGRGLIAQAIIERAKEHGVYVHESEELVGML-MQVELDQH 68
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y AVA+L+ +Y +
Sbjct: 69 IPPQLYLAVAELLAWLYRLE 88
>gi|16126150|ref|NP_420714.1| flhB-like protein [Caulobacter crescentus CB15]
gi|221234921|ref|YP_002517357.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
gi|13423358|gb|AAK23882.1| flhB-related protein [Caulobacter crescentus CB15]
gi|220964093|gb|ACL95449.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
Length = 87
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y E +AP +VA GQ I +K+ + A EH +PI E+P LA++L + I+
Sbjct: 12 RIAVALLY--EEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQAL-STIEIDEE 68
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+AVA+++ +
Sbjct: 69 IPEALYRAVAEVLSFLLK 86
>gi|253573505|ref|ZP_04850848.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847033|gb|EES75038.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 101
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + +APV+VAKG+ LIA ++ A EH IPI E+ +L L ++ ++ IP
Sbjct: 15 AVALKYDPGQGEAPVVVAKGKGLIADRILDAALEHGIPIQEDAALVEVL-SKLDLDQQIP 73
Query: 336 PVFYKAVAQLIYKIYH 351
Y VA+++ IY
Sbjct: 74 AELYDLVAEILTFIYR 89
>gi|238926781|ref|ZP_04658541.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
43531]
gi|238885313|gb|EEQ48951.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
43531]
Length = 103
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP
Sbjct: 18 AVAVKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ +A+++ +Y
Sbjct: 77 PELYRTIAEVLAHVYRI 93
>gi|297584023|ref|YP_003699803.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
gi|297142480|gb|ADH99237.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
Length = 98
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y T + AP + AKG+ +A+++ A EH+IPI E+ SL L Q+ I+
Sbjct: 13 KRAVALGYEVTRDSAPTIKAKGKGYVAEEIISRAKEHDIPIQEDKSLV-ELLSQLEIHEK 71
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+ VA++ IY
Sbjct: 72 IPEDLYEVVAEVFAFIYR 89
>gi|39995477|ref|NP_951428.1| FlhB domain-containing protein [Geobacter sulfurreducens PCA]
gi|39982240|gb|AAR33701.1| FlhB domain protein, putative [Geobacter sulfurreducens PCA]
gi|298504477|gb|ADI83200.1| FlhB cytoplasmic domain-related protein [Geobacter sulfurreducens
KN400]
Length = 90
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + + AP +VAKG + A+ + A E + + + P L R L QV I+S IP
Sbjct: 10 AVALSY-REGHYAPQVVAKGYGVTAEAIIACAREAGVYVHQSPELVRQLI-QVDIDSCIP 67
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+AVA+L+ +Y +
Sbjct: 68 ADLYRAVAELLAWLYWLE 85
>gi|114566998|ref|YP_754152.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337933|gb|ABI68781.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 89
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY +++ PV+VAKGQ IA+K++K+A E +PI E+ LA L + + IP
Sbjct: 9 AVALRYDMEKDEVPVVVAKGQGFIAEKIKKVARESGVPIKEDRELADYLMA-LDLYEEIP 67
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y VA+++ IY
Sbjct: 68 PELYAVVAEILAFIYRM 84
>gi|94263289|ref|ZP_01287105.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
gi|94272298|ref|ZP_01292101.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
gi|93450174|gb|EAT01485.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
gi|93456372|gb|EAT06496.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
Length = 96
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP
Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLT-EILSRLDLYQEIP 74
Query: 336 PVFYKAVAQLIYKIYH 351
P Y VA+++ IY
Sbjct: 75 PETYLLVAEILAFIYR 90
>gi|323956512|gb|EGB52254.1| flagellar biosynthetic protein FlhB [Escherichia coli H263]
Length = 115
Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L
Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 61
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
L + D + I+ + L A ++P + ++ I S ++
Sbjct: 62 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLG 111
>gi|296330823|ref|ZP_06873298.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674341|ref|YP_003866013.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151828|gb|EFG92702.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412585|gb|ADM37704.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 93
Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + ++
Sbjct: 6 PIRKAVALHYDEQKDKAPKVIATGKGHVADNIIKEAKKAGVPIQEDRTLV-ELMRHLTVD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA++ IY
Sbjct: 65 DQIPEALYETVAEIFSFIYRL 85
>gi|118581817|ref|YP_903067.1| FlhB domain-containing protein [Pelobacter propionicus DSM 2379]
gi|118504527|gb|ABL01010.1| FlhB domain protein [Pelobacter propionicus DSM 2379]
Length = 108
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 269 ITNPT---HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
+TNP A A+ Y Q APV+VA+G+ ++A+ + A E + I E P L + L
Sbjct: 1 MTNPDSDERKAAAISYKQGYY-APVVVARGKGVMAEAIIACAREAGVYIHESPELVQ-LL 58
Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
QV + IPP Y+AVA+++ +Y +
Sbjct: 59 MQVDTDQFIPPELYRAVAEVLVWLYRME 86
>gi|194014522|ref|ZP_03053139.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
gi|194013548|gb|EDW23113.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
Length = 91
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + ++
Sbjct: 6 PLRRAVALHYDEEKQKAPKVVATGSGYVADHIIEEAKKSGVPIQEDRNLV-ELMRHLTLD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y VA++ IY
Sbjct: 65 EEIPEALYDTVAEIFSFIYRL 85
>gi|313200541|ref|YP_004039199.1| flagellar biosynthetic protein [Methylovorus sp. MP688]
gi|312439857|gb|ADQ83963.1| putative flagellar biosynthetic protein [Methylovorus sp. MP688]
Length = 101
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++
Sbjct: 11 TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFVHESKELV-SLLMQIDLDD 68
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y A+A+++ +Y +
Sbjct: 69 HIPPKLYMAIAEILAWLYRLE 89
>gi|293605030|ref|ZP_06687424.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
43553]
gi|292816579|gb|EFF75666.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
43553]
Length = 105
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP
Sbjct: 19 AVAISYD-DKDGAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 76
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVA+L+ +Y +
Sbjct: 77 PQLYVAVAELLAWLYRLE 94
>gi|224370762|ref|YP_002604926.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
gi|223693479|gb|ACN16762.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
Length = 88
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + +P + AKG ++A+K+ IA +H++P+ ++P L L + IN IP
Sbjct: 6 AVALKYDRAAGSSPKVTAKGSGIVAQKIIDIAEQHDVPVKKDPDLVEVL-AGLDINQEIP 64
Query: 336 PVFYKAVAQLIYKIYHK 352
Y AVA+L+ +Y
Sbjct: 65 QEIYVAVAELLAFVYSI 81
>gi|148264415|ref|YP_001231121.1| flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4]
gi|146397915|gb|ABQ26548.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Geobacter uraniireducens Rf4]
Length = 94
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y + AP ++AKG + A+ + +A E+ + + E P L L QV + IP
Sbjct: 11 AVAMAYDPG-DYAPRVIAKGCGVTAEAIIALARENGVYVHESPDLMNLLL-QVDQDRFIP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y+AVA+L+ +Y +
Sbjct: 69 PELYRAVAELLAWLYRLE 86
>gi|78224352|ref|YP_386099.1| FlhB domain-containing protein [Geobacter metallireducens GS-15]
gi|78195607|gb|ABB33374.1| FlhB domain protein, putative [Geobacter metallireducens GS-15]
Length = 94
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + + AP +VAKG + A+ + A E + + E P+L L QV I+ IP
Sbjct: 10 AVALSYREGQY-APQVVAKGHGVTAEAIIACAREAGVFVHESPALVSQL-MQVDIDHYIP 67
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y+AVA+L+ +Y +
Sbjct: 68 PELYRAVAELLAWLYWLE 85
>gi|16078671|ref|NP_389490.1| flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309483|ref|ZP_03591330.1| hypothetical protein Bsubs1_08861 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313808|ref|ZP_03595613.1| hypothetical protein BsubsN3_08797 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318732|ref|ZP_03600026.1| hypothetical protein BsubsJ_08731 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323003|ref|ZP_03604297.1| hypothetical protein BsubsS_08837 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321315374|ref|YP_004207661.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
gi|81342418|sp|O34867|YLQH_BACSU RecName: Full=Uncharacterized protein ylqH
gi|2462966|emb|CAA04418.1| YlqH protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633980|emb|CAB13481.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484159|dbj|BAI85234.1| hypothetical protein BSNT_02627 [Bacillus subtilis subsp. natto
BEST195]
gi|320021648|gb|ADV96634.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
Length = 93
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + ++
Sbjct: 6 PIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLV-ELMRHLTVD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA++ IY
Sbjct: 65 DQIPEALYETVAEIFSFIYKL 85
>gi|124516284|gb|EAY57792.1| probable flagellar biosynthesis protein [Leptospirillum rubarum]
Length = 100
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+AL Y E+DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP
Sbjct: 8 GSIAIALGYHPEEDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAELLIR-VPPGH 66
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IP Y+AVA L+ +Y
Sbjct: 67 PIPAELYQAVALLLAYLYR 85
>gi|163856461|ref|YP_001630759.1| hypothetical protein Bpet2150 [Bordetella petrii DSM 12804]
gi|163260189|emb|CAP42491.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
petrii]
Length = 104
Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 270 TNPTH-YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
NP A+AL Y + AP +VAKG IA + + A EH + + E L SL QV
Sbjct: 9 GNPHRGAAVALSY-GEHDTAPRVVAKGYGQIADTIVRTAREHGLYVHESRELV-SLLMQV 66
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
+++ IPP Y AVA+L+ +Y +
Sbjct: 67 DLDAHIPPQLYAAVAELLAWLYRLE 91
>gi|315648157|ref|ZP_07901258.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
gi|315276803|gb|EFU40146.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
Length = 103
Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
K M +A AL+Y E++AP++VAKGQ +A+ +
Sbjct: 3 KQEQEQGSMTAMKKAV---------------ALKYTPGESEAPMVVAKGQGKLAESILDK 47
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
A EH +P+ E+ +L + ++ ++ IP Y+ VA+++ +Y
Sbjct: 48 AKEHGVPVQEDAALV-EILSKLDLDQQIPAELYQLVAEVLTYVYR 91
>gi|258515578|ref|YP_003191800.1| hypothetical protein Dtox_2366 [Desulfotomaculum acetoxidans DSM
771]
gi|257779283|gb|ACV63177.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM
771]
Length = 104
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A ALR+ ++ APV+VA G+ IA+ ++K+A E +IPI ++P LA++L +
Sbjct: 18 NTVETASALRFDPNKDQAPVVVATGKGDIARSIKKMAGELHIPIVKDPVLAQTLH-TLGT 76
Query: 331 NSAIPPVFYKAVAQLIYKIY 350
N IP Y+AVA+++ +Y
Sbjct: 77 NIEIPEHLYEAVAKVLAYVY 96
>gi|78485097|ref|YP_391022.1| flagellar protein FhlB-like protein [Thiomicrospira crunogena
XCL-2]
gi|78363383|gb|ABB41348.1| FlhB domain protein [Thiomicrospira crunogena XCL-2]
Length = 104
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y AP + AKG +A+++ K+A E+NIPI E+ L + L QV ++
Sbjct: 13 KVAITLEYDGE--SAPKVTAKGSGTLAEQIIKVAKENNIPITEDHDLVQ-LLAQVELDQE 69
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP + Y+AV Q++ Y
Sbjct: 70 IPELLYEAVVQVLIFAYQL 88
>gi|157692287|ref|YP_001486749.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
gi|157681045|gb|ABV62189.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
Length = 91
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + ++
Sbjct: 6 PLRRAVALHYDEEKQKAPKVVATGSGYVADNIIEEAKKSGVPIQEDRNLV-ELMRHLTLD 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y VA++ IY
Sbjct: 65 EEIPEALYDTVAEIFSFIYRL 85
>gi|319649580|ref|ZP_08003736.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
gi|317398742|gb|EFV79424.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
Length = 98
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y AP + AKG+ L+A+ + A EH+IP+ E+P+L L ++ IN IP
Sbjct: 12 AVALTYDPVNQGAPRISAKGKGLVAENILVKAKEHDIPVQEDPALV-ELLGKLNINEGIP 70
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA++ IY
Sbjct: 71 EELYQAVAEVFVFIYR 86
>gi|320354269|ref|YP_004195608.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
gi|320122771|gb|ADW18317.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
Length = 102
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y Q + AP ++A G NLIA+K+ A E + I E+ L L ++P+ IP
Sbjct: 11 AVALLYDQDKGTAPKVIASGSNLIAEKIIATAMEAGVHIREDKDLV-ELLAKIPLGQEIP 69
Query: 336 PVFYKAVAQLIYKIYH 351
Y+ +A+++ +Y
Sbjct: 70 VELYQTIAEVLAFVYS 85
>gi|288553079|ref|YP_003425014.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
gi|288544239|gb|ADC48122.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
Length = 91
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY + D+P ++AKG+ +IA+++ + A H+IPI E+ SL L Q+ IN
Sbjct: 7 KQAVALRYDAAKQDSPEVIAKGKGIIAEEIIEKAKNHHIPIQEDASLV-ELLSQLNINQT 65
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP Y+ VA++ IY
Sbjct: 66 IPPELYEVVAEVFAFIYR 83
>gi|157363588|ref|YP_001470355.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
gi|157314192|gb|ABV33291.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
Length = 83
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y DAP ++AKG+ IA+++ K A E +P+ P L R L++ + +
Sbjct: 6 KLAVALGYDPDVFDAPFVIAKGKEEIAERIIKQALEAKVPVVSSPELVRKLYR-LEVLEE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y AVA+++ + +
Sbjct: 65 IPDDLYFAVAEILVFVQNL 83
>gi|218778848|ref|YP_002430166.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
AK-01]
gi|218760232|gb|ACL02698.1| FlhB domain-containing protein [Desulfatibacillum alkenivorans
AK-01]
Length = 90
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y ++AP + A G+ +IA+K+ +A +H +P+ E+P L L ++ +N IP
Sbjct: 8 AVALKYNALADNAPRVTATGKGIIAEKIIDLARKHGVPVQEDPDLVEVL-ARLDLNEEIP 66
Query: 336 PVFYKAVAQLIYKIYH 351
Y VA+L+ +Y
Sbjct: 67 AELYVVVAELLSFVYK 82
>gi|94267692|ref|ZP_01290961.1| FlhB domain protein [delta proteobacterium MLMS-1]
gi|93451894|gb|EAT02625.1| FlhB domain protein [delta proteobacterium MLMS-1]
Length = 96
Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP
Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLT-EILSRLDLYQEIP 74
Query: 336 PVFYKAVAQLIYKIYH 351
P Y VA+++ IY
Sbjct: 75 PETYLLVAEILAFIYR 90
>gi|254517031|ref|ZP_05129089.1| FlhB domain protein [gamma proteobacterium NOR5-3]
gi|219674536|gb|EED30904.1| FlhB domain protein [gamma proteobacterium NOR5-3]
Length = 96
Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
+ AL Y AP+LVAKG+N IA ++ ++A E+ +PI ++ L L Q+P+ +P
Sbjct: 15 SAALSYSGE--GAPLLVAKGENAIADRIVELAAENGVPIVQDAQLT-ELLCQIPLGDEVP 71
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y AVA+++ +Y
Sbjct: 72 PALYVAVAEVLAYVYRL 88
>gi|115525542|ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
gi|115519489|gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
Length = 88
Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+T P LA+ + AP++VAKG+ I K+ ++A H++PI E LA +L +V
Sbjct: 1 MTRPLSETLAIALHYDQLGAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGAL-SKV 59
Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
+ IP YKAVA+++ +
Sbjct: 60 ELGEEIPQELYKAVAEVLVFVLRL 83
>gi|330883125|gb|EGH17274.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 116
Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
+ A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+
Sbjct: 7 SAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVV 66
Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+ L R+L++ + IP +AV + +
Sbjct: 67 QSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 102
>gi|242309108|ref|ZP_04808263.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
98-5489]
gi|239524149|gb|EEQ64015.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
98-5489]
Length = 92
Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I+
Sbjct: 5 PPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEID 63
Query: 332 SAIPPVFYKAVAQLIYKIYH 351
IPP YKAV ++ +Y
Sbjct: 64 EEIPPELYKAVVEVFIWLYK 83
>gi|147676798|ref|YP_001211013.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Pelotomaculum thermopropionicum SI]
gi|146272895|dbj|BAF58644.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Pelotomaculum thermopropionicum SI]
Length = 95
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A ALRY +N APV+VA G+ L AKK+++IA + +P++++ +LAR+L + I
Sbjct: 7 EVAAALRYEAGKNGAPVVVAAGRGLKAKKIKEIAEQAGVPVYQDEALARTLHD-LGIGVE 65
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y+AVA+++ +
Sbjct: 66 IPPRLYQAVARILVFV 81
>gi|289547861|ref|YP_003472849.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
gi|289181478|gb|ADC88722.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
Length = 87
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY Q ++ APV+VAKG +A+K+ ++A E+ +P+ E+P L +L V + IP
Sbjct: 6 AVALRYHQEKDRAPVVVAKGMGDVAEKILQLAKEYGVPVVEDPQLVTAL-MGVELLEEIP 64
Query: 336 PVFYKAVAQLIYKI 349
P Y+AVAQ++ +
Sbjct: 65 PRLYRAVAQILLFV 78
>gi|153952619|ref|YP_001398106.1| FlhB domain-containing protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152940065|gb|ABS44806.1| FlhB domain protein [Campylobacter jejuni subsp. doylei 269.97]
Length = 93
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP
Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLI-EILSKLDLGDEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKAVA++ IY
Sbjct: 70 PNMYKAVAEVFAFIYQM 86
>gi|302878303|ref|YP_003846867.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
gi|302581092|gb|ADL55103.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
Length = 97
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL Y + AP +VA+G+ LIA+ + + A ++ + + E L L QV +
Sbjct: 4 NSQQAAVALAY-GQTSGAPKVVARGRGLIAQAIIERAKQNGVYVHESADLV-GLLMQVEL 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y AVA+L+ +Y +
Sbjct: 62 DEQIPPQLYLAVAELLAWLYRLE 84
>gi|168698715|ref|ZP_02730992.1| FlhB domain protein [Gemmata obscuriglobus UQM 2246]
Length = 89
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y ++ AP +VAKG+ A+++ +A ++ +P+ E+P+L + L ++ ++
Sbjct: 7 KRAVALSYDPAKDRAPKVVAKGKGRTAEQILALARKNAVPVREDPTLVQVL-SRLKVDQE 65
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP Y+AVA ++ +
Sbjct: 66 IPPEVYRAVALILAFLNR 83
>gi|119899000|ref|YP_934213.1| flagellar related protein [Azoarcus sp. BH72]
gi|119671413|emb|CAL95326.1| conserved hypothetical flagellar related protein [Azoarcus sp.
BH72]
Length = 125
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL Y E AP +VAKG+ LIA+++ + A + I + + L +L QV ++
Sbjct: 13 PRGEAVALTYASGEA-APRVVAKGRGLIAQEIIERARDAGIYVHQSRELV-ALLMQVDLD 70
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
S IPP Y VA+L+ +Y +
Sbjct: 71 SHIPPQLYVVVAELLAWLYRIE 92
>gi|104782789|ref|YP_609287.1| hypothetical protein PSEEN3784 [Pseudomonas entomophila L48]
gi|95111776|emb|CAK16500.1| conserved hypothetical protein; FlhB domain protein [Pseudomonas
entomophila L48]
Length = 114
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + IA EH +PI+E L R L ++ +
Sbjct: 7 RQAIALSYDGQQ--APTLSAKGDDELAEAILAIAREHEVPIYENAELVR-LLARLELGEQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I + +
Sbjct: 64 IPEALYLTIAEIIAFAWQLR 83
>gi|57167848|ref|ZP_00366988.1| FlhB domain protein [Campylobacter coli RM2228]
gi|305432127|ref|ZP_07401293.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
gi|57020970|gb|EAL57634.1| FlhB domain protein [Campylobacter coli RM2228]
gi|304444792|gb|EFM37439.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
gi|315931143|gb|EFV10116.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 327]
Length = 93
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP
Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLI-EILSKLDLGDEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKAVA++ IY
Sbjct: 70 PNMYKAVAEVFAFIYQM 86
>gi|289805561|ref|ZP_06536190.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 82
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + D+KTEAP+ ++E A EG P SRE + +L + + F +
Sbjct: 1 MAEE-SDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59
Query: 61 DLHVLLASATQRKLEDISHIVFLL 84
L L R + D + I+ +
Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQI 82
>gi|57237689|ref|YP_178937.1| FlhB domain-containing protein [Campylobacter jejuni RM1221]
gi|86150272|ref|ZP_01068499.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
gi|86152177|ref|ZP_01070389.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|86153293|ref|ZP_01071497.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
gi|88597543|ref|ZP_01100777.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
gi|121612445|ref|YP_001000532.1| FlhB domain-containing protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|148926549|ref|ZP_01810231.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157415115|ref|YP_001482371.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81116]
gi|167005466|ref|ZP_02271224.1| putative flagellar biosynthesis protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|205356346|ref|ZP_03223111.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562476|ref|YP_002344255.1| hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283957164|ref|ZP_06374628.1| putative flagellar biosynthesis protein [Campylobacter jejuni
subsp. jejuni 1336]
gi|57166493|gb|AAW35272.1| FlhB domain protein [Campylobacter jejuni RM1221]
gi|85839388|gb|EAQ56650.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
gi|85840962|gb|EAQ58212.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|85843019|gb|EAQ60230.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
gi|87249511|gb|EAQ72471.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|88190135|gb|EAQ94110.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360182|emb|CAL34976.1| conserved hypothetical protein Cj0848c [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845243|gb|EDK22337.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157386079|gb|ABV52394.1| putative flagellar biosynthesis protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|205345731|gb|EDZ32369.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283791340|gb|EFC30145.1| putative flagellar biosynthesis protein [Campylobacter jejuni
subsp. jejuni 1336]
gi|284926093|gb|ADC28445.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni IA3902]
gi|307747756|gb|ADN91026.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni M1]
gi|315058298|gb|ADT72627.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Campylobacter jejuni subsp. jejuni S3]
gi|315926508|gb|EFV05890.1| flhB domain protein [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315929380|gb|EFV08585.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 305]
Length = 93
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP
Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLI-EILSKLDLGDEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKAVA++ IY
Sbjct: 70 PNMYKAVAEVFAFIYQM 86
>gi|327441069|dbj|BAK17434.1| uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Solibacillus silvestris StLB046]
Length = 97
Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++ P +VAKG+ IA+ + + A H +P++E+P+L L Q+ +N++IP
Sbjct: 11 AIALSYDPQKSSGPTIVAKGKGKIAENILEKAAMHEVPVYEDPNLV-ELLGQLDLNTSIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA++ IYH
Sbjct: 70 EELYQAVAEVFAFIYHL 86
>gi|52842789|ref|YP_096588.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629900|gb|AAU28641.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 112
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+ALRY P + AKG+ L A+++ A EH IP+ + P L +L QV +N I
Sbjct: 31 VAVALRYDGNSP--PKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 87
Query: 335 PPVFYKAVAQLIYKIY 350
P Y AVAQ++ +Y
Sbjct: 88 PKALYIAVAQILAFLY 103
>gi|325982832|ref|YP_004295234.1| type III secretion exporter [Nitrosomonas sp. AL212]
gi|325532351|gb|ADZ27072.1| type III secretion exporter [Nitrosomonas sp. AL212]
Length = 109
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+AL Y + + AP ++AKG+ LIA+++ + A E NI + E L +L QV +
Sbjct: 5 DSYSTAVALAYREGQI-APKVIAKGRGLIAQEIIRRAKEANIYVHESSELV-ALLMQVNL 62
Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y AVA+L+ +Y +
Sbjct: 63 DDRIPPQLYVAVAELLAWLYRLE 85
>gi|253998466|ref|YP_003050529.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
gi|253985145|gb|ACT50002.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
Length = 101
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++
Sbjct: 11 TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFLHESKELV-SLLMQIDLDD 68
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y A+A+++ +Y +
Sbjct: 69 HIPPKLYMAIAEILAWLYRLE 89
>gi|328544226|ref|YP_004304335.1| cytoplasmic domain of flagellar protein FhlB-like protein
[polymorphum gilvum SL003B-26A1]
gi|326413968|gb|ADZ71031.1| Cytoplasmic domain of flagellar protein FhlB-like protein
[Polymorphum gilvum SL003B-26A1]
Length = 105
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP + AKG+ +A+++ + A H +PI +P LA +L Q+ I+
Sbjct: 22 RLAVALHYD--KAGAPTVTAKGRGAVARRIEETARAHGVPIEADPLLAEAL-AQIEIDQE 78
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+AVA LI I
Sbjct: 79 IPVELYQAVAVLIGFILR 96
>gi|237653555|ref|YP_002889869.1| flagellar related protein [Thauera sp. MZ1T]
gi|237624802|gb|ACR01492.1| flagellar related protein [Thauera sp. MZ1T]
Length = 114
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y E AP +VAKG+ ++A+++ + A E + + E P L +L QV +++ IP
Sbjct: 12 AVALAYTAGEA-APRVVAKGKGVVAREILERAREAGVFVHESPELV-ALLMQVDLDARIP 69
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVA+L+ +Y +
Sbjct: 70 PQLYVAVAELLAWLYRLE 87
>gi|54295419|ref|YP_127834.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
gi|53755251|emb|CAH16745.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
Length = 88
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+ALRY P + AKG+ L A+++ A EH IP+ + P L +L QV +N I
Sbjct: 7 VAVALRYDGNSP--PKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVDLNEEI 63
Query: 335 PPVFYKAVAQLIYKIY 350
P Y AVAQ++ +Y
Sbjct: 64 PKALYIAVAQILAFLY 79
>gi|317129223|ref|YP_004095505.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
gi|315474171|gb|ADU30774.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
Length = 100
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y ++E++APV+ AKG+ +A ++ K A E+NIPI E+ SL + Q+ +N
Sbjct: 14 KRAVALGYNRSEDEAPVVKAKGKGYVADEIIKRARENNIPIQEDSSLV-EILSQLEMNER 72
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y VA++ +Y
Sbjct: 73 IPTALYGVVAEVFSFVYR 90
>gi|188586969|ref|YP_001918514.1| flagellar biosynthesis protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351656|gb|ACB85926.1| flagellar biosynthesis protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 96
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL+Y Q +N AP L+A GQ L+A ++ + A E I I+++P LA +L Q+ +
Sbjct: 9 KRAAALKYDQDKNQAPQLIAAGQGLVADEIIRRAEEEGIYIYQDPELANTL-SQLSLYQE 67
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+ VA+++ I
Sbjct: 68 IPEELYQGVAEVLAFIQRI 86
>gi|205373357|ref|ZP_03226161.1| flagellar biosynthesis protein [Bacillus coahuilensis m4-4]
Length = 94
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY DAP L+AKG+ L+A+++ + A E+ I + E+P+L L Q+ +N
Sbjct: 7 KSAIALRYDDMSMDAPKLIAKGKGLVAEQIIEKAKENGIQVQEDPNLVEML-SQLNMNET 65
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+ VA++ +Y
Sbjct: 66 IPAELYEVVAEVFAYVYK 83
>gi|325294769|ref|YP_004281283.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065217|gb|ADY73224.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 88
Score = 96.1 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L+Y + +++AP +VAKG+ ++A+++ ++A +HNIPI E+ L L K + I
Sbjct: 3 KRAVVLKYNKAKDNAPKVVAKGEGILAERILELAQKHNIPIVEDKELVSFLLK-LNIGEE 61
Query: 334 IPPVFYKAVAQLIYKIY 350
IPP YK +A+++ Y
Sbjct: 62 IPPTLYKIIAKILSYAY 78
>gi|297530618|ref|YP_003671893.1| type III secretion exporter [Geobacillus sp. C56-T3]
gi|297253870|gb|ADI27316.1| type III secretion exporter [Geobacillus sp. C56-T3]
Length = 95
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP
Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLV-ELLGKVEINETIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
Y VA+L +Y
Sbjct: 67 EELYALVAELFAFLYQL 83
>gi|326204817|ref|ZP_08194671.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
gi|325985029|gb|EGD45871.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
Length = 98
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP +VA G+ IA+++ + A E+N+P++++ +LA++L + I IP
Sbjct: 13 AAALQYSPDSDAAPRIVAAGKGQIAERIIQKAQENNVPLYQDTNLAQTL-SSLSIGDEIP 71
Query: 336 PVFYKAVAQLIYKI 349
P Y+ VA+++ I
Sbjct: 72 PEIYEVVAEILIFI 85
>gi|167646750|ref|YP_001684413.1| flhB-like protein [Caulobacter sp. K31]
gi|167349180|gb|ABZ71915.1| flhB-related protein [Caulobacter sp. K31]
Length = 90
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY E +AP +VA G+ + K+ + A EH +PI E +LA++L + ++
Sbjct: 11 RIAVALRY--EEPNAPRVVATGRGWLGDKIIETAREHGVPIEENAALAQAL-STIELDEE 67
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+AVA+++ I
Sbjct: 68 IPEALYRAVAEILGFILR 85
>gi|312959804|ref|ZP_07774320.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
gi|311285970|gb|EFQ64535.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
Length = 109
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T + A+AL+Y + AP L AKG + +A+ + K+A E+ +PI+E L + L ++
Sbjct: 4 TESSRQAIALKYDGQQ--APTLTAKGDDALAEAILKLARENEVPIYENAELVK-LLARME 60
Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
+ +IP Y+ +A++I + K
Sbjct: 61 LGDSIPEELYRTIAEIIAFAWTLK 84
>gi|296273468|ref|YP_003656099.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
gi|296097642|gb|ADG93592.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
Length = 91
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
AL+Y ++ AP +VAKG +A + KIA E+NIPI ++ L L ++ +N IP
Sbjct: 10 VAALKYNMQDDTAPRVVAKGIGELASNIIKIAKENNIPIKKDEDLV-ELLTKLDVNQQIP 68
Query: 336 PVFYKAVAQLIYKIYHK 352
YKAVA++ IY
Sbjct: 69 NNLYKAVAEVFAFIYDL 85
>gi|118474492|ref|YP_892339.1| FlhB domain-containing protein [Campylobacter fetus subsp. fetus
82-40]
gi|118413718|gb|ABK82138.1| FlhB domain protein [Campylobacter fetus subsp. fetus 82-40]
Length = 87
Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + ++AP ++A G+ +A K+ + A +H IPI E+ L + ++ IN IP
Sbjct: 7 AVALGYNKKRDNAPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLV-EILSKIDINQEIP 65
Query: 336 PVFYKAVAQLIYKIYH 351
P YKAVA++ +Y
Sbjct: 66 PNLYKAVAEVFSFLYR 81
>gi|187935380|ref|YP_001887350.1| flagella-associated protein [Clostridium botulinum B str. Eklund
17B]
gi|188588297|ref|YP_001922288.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
E43]
gi|251780672|ref|ZP_04823592.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|187723533|gb|ACD24754.1| flagella-associated protein [Clostridium botulinum B str. Eklund
17B]
gi|188498578|gb|ACD51714.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
E43]
gi|243084987|gb|EES50877.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 86
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y +AP++ A G IA K+ + A E+ +PI LA L V + IP
Sbjct: 7 AAALKYELNNTEAPMIAASGMGHIADKIIEKAQENEVPIVYNKELAN-LLCNVDVGDEIP 65
Query: 336 PVFYKAVAQLIYKI 349
Y+AVA +I +
Sbjct: 66 TELYEAVAHVIAFV 79
>gi|114777940|ref|ZP_01452854.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
gi|114551727|gb|EAU54279.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
Length = 95
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
H A+AL + + AP + AKG +A ++ ++A E+NIPI E+ L + +F Q+ I ++
Sbjct: 6 HQAIALNWDPYLDAAPKITAKGSGQLADEIIRLARENNIPIREDRDLVQ-IFSQLDIGAS 64
Query: 334 IPPVFYKAVAQLIYKIYH 351
+PP + A+A+++ IY
Sbjct: 65 VPPEVHTAIAEILAFIYW 82
>gi|70729068|ref|YP_258804.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf-5]
gi|68343367|gb|AAY90973.1| FlhB domain protein [Pseudomonas fluorescens Pf-5]
Length = 109
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL+Y + AP L AKG + +A+ + KIA ++ +PI+E L + L ++ +
Sbjct: 6 PPRQAIALKYDGQQ--APTLTAKGDDELAEAILKIARDYEVPIYENAELVK-LLARLELG 62
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
+IPP Y+ +A++I ++ K
Sbjct: 63 ESIPPELYRTIAEIIAFAWNLK 84
>gi|194292856|ref|YP_002008763.1| flagellar protein [Cupriavidus taiwanensis LMG 19424]
gi|193226760|emb|CAQ72711.1| putative flagellar protein [Cupriavidus taiwanensis LMG 19424]
Length = 96
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP +VAKG ++A+ + A E + + + P+L L QV ++S IP
Sbjct: 11 AVALSYQP-SDKAPRIVAKGYGVVAEAIIARAKEAGVYVHDSPTLVN-LLMQVDLDSQIP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVA+L+ +Y +
Sbjct: 69 PQLYVAVAELLAWLYQLE 86
>gi|167950811|ref|ZP_02537885.1| FlhB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 94
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+AL Y ++AP L AKG+ +A+++ IA EHNIP+ ++ L+ +L Q+P+
Sbjct: 9 ADLAIALNYD--GSNAPRLTAKGRGAVAEQILSIAKEHNIPLHQDTELS-ALLAQIPLGD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y+AVA++I Y
Sbjct: 66 EIPEALYRAVAEVIAFAYLL 85
>gi|325271963|ref|ZP_08138414.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
gi|324102911|gb|EGC00307.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
Length = 117
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + IA+ + +A EH +PI+E L R L ++ +
Sbjct: 7 RQAIALSYDGQQ--APSLTAKGDDSIAEAILALAREHEVPIYENAELVR-LLARLELGEQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I + +
Sbjct: 64 IPEALYLTIAEIIAFAWQLR 83
>gi|307826053|ref|ZP_07656266.1| type III secretion exporter [Methylobacter tundripaludum SV96]
gi|307732892|gb|EFO03756.1| type III secretion exporter [Methylobacter tundripaludum SV96]
Length = 94
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
+ A+AL+Y +AP + AKG L A+++ +IA H IP+ EP LAR + Q+P+
Sbjct: 8 SDIAIALKYDGK--NAPKVTAKGSGLTAEQILQIAELHGIPLQTEPELAR-ILAQIPLGD 64
Query: 333 AIPPVFYKAVAQLIYKIY 350
IP Y AVA++I Y
Sbjct: 65 EIPNELYVAVAEIIAFAY 82
>gi|74317614|ref|YP_315354.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
gi|74057109|gb|AAZ97549.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
Length = 124
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PT A A + + AP +VAKG+ ++A + + A + + E L +L Q+ ++
Sbjct: 32 PTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESRELL-ALLMQIDLD 90
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
S IPP Y AVA+L+ +YH +
Sbjct: 91 SHIPPQLYIAVAELLAWLYHLE 112
>gi|329915167|ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
IMCC9480]
gi|327544973|gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
IMCC9480]
Length = 97
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+P A+AL Y + AP +VAKG+ LIA ++ + A EH + + E L +L QV +
Sbjct: 6 SPLKNAVALAYQSG-DAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELV-ALLMQVDL 63
Query: 331 NSAIPPVFYKAVAQLIYKIY 350
+ IPP Y+A+A+L+ +Y
Sbjct: 64 DGQIPPALYRAIAELLAWLY 83
>gi|304311129|ref|YP_003810727.1| Probably flagellar biosynthesis-related protein [gamma
proteobacterium HdN1]
gi|301796862|emb|CBL45074.1| Probably flagellar biosynthesis-related protein [gamma
proteobacterium HdN1]
Length = 113
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
+ A+AL Y + AP + A G N +A+ + +IA EH +PI+E L + ++
Sbjct: 7 GDAPEKAVALTYD--GSRAPFISASGDNELAETILRIAREHGVPIYENKDLVN-ILSRLE 63
Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
I IP + Y+ +A++I +Y K
Sbjct: 64 IGEEIPELLYRTIAEIIAFVYMLK 87
>gi|311695179|gb|ADP98052.1| flagellar protein FhlB cytoplasmic domain protein [marine bacterium
HP15]
Length = 104
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + AP + A G + +A+++ +IA EHN+P++E LA S+ ++ +N IP
Sbjct: 12 AVALKYDGEK--APTISATGTHELAEEIIRIAREHNVPLYENAELA-SILARLSLNEEIP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ +A+++ +H +
Sbjct: 69 ESLYRVIAEILAFAFHIR 86
>gi|170722818|ref|YP_001750506.1| hypothetical protein PputW619_3655 [Pseudomonas putida W619]
gi|169760821|gb|ACA74137.1| conserved hypothetical protein [Pseudomonas putida W619]
Length = 114
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + +A EH +PI+E L R L ++ +
Sbjct: 7 RQAIALSYDGQQ--APTLSAKGDDELAEAILALAREHEVPIYENAELVR-LLARLELGEQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I + +
Sbjct: 64 IPEALYLTIAEIIAFAWQLR 83
>gi|303241146|ref|ZP_07327654.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
gi|302591273|gb|EFL61013.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
Length = 98
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
AL+Y N AP ++ G IA+K+ + A E++IPI++ LA +L I
Sbjct: 9 KQVAALKYSPQSNRAPEIIGLGSGEIAEKIIEKAKENDIPIYKNDELASTL-SHFKIGDE 67
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y+ VA+++ +
Sbjct: 68 IPPELYEVVAEILVFV 83
>gi|317406222|gb|EFV86468.1| flagellar protein [Achromobacter xylosoxidans C54]
Length = 107
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP
Sbjct: 18 AVAISYD-DKDAAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 75
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVA+L+ +Y +
Sbjct: 76 PQLYVAVAELLAWLYRLE 93
>gi|90415325|ref|ZP_01223259.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
HTCC2207]
gi|90332648|gb|EAS47818.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
HTCC2207]
Length = 98
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P+ A+AL Y APV+ AKGQ +A+ + + A + I I E+P L +L Q+ +N
Sbjct: 5 PSRRAVALEY--GNRAAPVMTAKGQGEVAELIIEEAKKQGIQIAEDPQLV-ALLGQLELN 61
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
IP Y AV+ ++ +Y K
Sbjct: 62 EEIPESLYVAVSVILSWVYWLK 83
>gi|283954420|ref|ZP_06371940.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
gi|283794037|gb|EFC32786.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
Length = 93
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N AP ++A G+ A K+ +A E+ +PI E+ L + ++ + IP
Sbjct: 11 AVALGYQREKNSAPKVLASGKGESAAKIISLAKEYGVPIKEDEDLI-EILSKLDLGDEIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKAVA++ IY
Sbjct: 70 PNMYKAVAEVFAFIYQM 86
>gi|307946460|ref|ZP_07661795.1| type III secretion protein [Roseibium sp. TrichSKD4]
gi|307770124|gb|EFO29350.1| type III secretion protein [Roseibium sp. TrichSKD4]
Length = 99
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ALRY AP + AKG +A ++ +IA E +PI ++P +A +L Q+ I+
Sbjct: 14 KVAVALRYDNE--GAPTVTAKGTGSVADRIEEIARESGVPIEQDPMMAEAL-SQIDIDEE 70
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+AVA LI +
Sbjct: 71 IPIELYQAVAVLIGFVMR 88
>gi|125973277|ref|YP_001037187.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
gi|256003757|ref|ZP_05428745.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
gi|281417480|ref|ZP_06248500.1| type III secretion exporter [Clostridium thermocellum JW20]
gi|125713502|gb|ABN51994.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
gi|255992318|gb|EEU02412.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
gi|281408882|gb|EFB39140.1| type III secretion exporter [Clostridium thermocellum JW20]
gi|316940491|gb|ADU74525.1| type III secretion exporter [Clostridium thermocellum DSM 1313]
Length = 94
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
AL+Y EN+AP ++ G+ IA+K+ + A E+NIPI+E LA +L + I
Sbjct: 8 KQVAALKYSPEENNAPQIIGLGKGEIAEKILEKAKENNIPIYENEELAAAL-NAMNIGDE 66
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y VAQ++ +
Sbjct: 67 IPPELYDIVAQILVFV 82
>gi|295689582|ref|YP_003593275.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
gi|295431485|gb|ADG10657.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
Length = 87
Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL + AP ++A GQ + +K+ + A EH +PI E+P LA++L + I+
Sbjct: 12 RIAVALLHDD--ASAPRVLASGQGWVGEKIIETAREHGVPIEEDPVLAQAL-STIEIDEE 68
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP Y+AVA+++ +
Sbjct: 69 IPDALYRAVAEVLGFLLQ 86
>gi|56419742|ref|YP_147060.1| hypothetical protein GK1207 [Geobacillus kaustophilus HTA426]
gi|56379584|dbj|BAD75492.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 95
Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP
Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLV-ELLGKVEINEMIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
Y VA+L +Y
Sbjct: 67 EELYALVAELFAFLYQL 83
>gi|268678710|ref|YP_003303141.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
6946]
gi|268616741|gb|ACZ11106.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
6946]
Length = 92
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T+ T A+AL+Y + + AP +VA G+ +A + K+A EH+I I ++ L L ++
Sbjct: 5 TSKTQKAVALKYDREKQGAPKVVASGKGEVANNIIKLAQEHDIFIKKDADLV-ELLSKIE 63
Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352
IN IPP+ YKAVA++ IY
Sbjct: 64 INKEIPPMLYKAVAEVFSFIYKI 86
>gi|149928166|ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
gi|149823151|gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
Length = 95
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP +VAKGQ LIA+++ + A E + + E L SL V ++
Sbjct: 8 QQAVALAY-LEHSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELV-SLLMNVDLDQQ 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+A+A+L+ +Y +
Sbjct: 66 IPPGLYQAIAELLAWVYQIE 85
>gi|146282896|ref|YP_001173049.1| FlhB domain-containing protein [Pseudomonas stutzeri A1501]
gi|145571101|gb|ABP80207.1| FlhB domain protein [Pseudomonas stutzeri A1501]
gi|327481236|gb|AEA84546.1| FlhB domain-containing protein [Pseudomonas stutzeri DSM 4166]
Length = 110
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y +AP L AKG + +A+ + IA EH +PI+E L + L ++ +
Sbjct: 7 RQAIALSYD--GVNAPSLSAKGDDELAEAILAIAREHEVPIYENADLVK-LLARLELGDE 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I ++ K
Sbjct: 64 IPEALYRTIAEIIAFAWYLK 83
>gi|223039449|ref|ZP_03609737.1| FlhB domain protein [Campylobacter rectus RM3267]
gi|222879245|gb|EEF14338.1| FlhB domain protein [Campylobacter rectus RM3267]
Length = 89
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L + +V +N
Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLV-EILSKVDLNE 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
+PP YKAVA++ +Y
Sbjct: 66 EVPPNLYKAVAEIFNFLYRM 85
>gi|224419116|ref|ZP_03657122.1| hypothetical protein HcanM9_07572 [Helicobacter canadensis MIT
98-5491]
gi|253828052|ref|ZP_04870937.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313142623|ref|ZP_07804816.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
98-5491]
gi|253511458|gb|EES90117.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131654|gb|EFR49271.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
98-5491]
Length = 93
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
+ A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I+
Sbjct: 6 SQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEIDE 64
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IPP YKAV ++ +Y
Sbjct: 65 EIPPDLYKAVVEVFIWLYK 83
>gi|54298571|ref|YP_124940.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
gi|148358686|ref|YP_001249893.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
gi|296108224|ref|YP_003619925.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
Alcoy]
gi|53752356|emb|CAH13788.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
gi|148280459|gb|ABQ54547.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
gi|295650126|gb|ADG25973.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
Alcoy]
Length = 88
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+ALRY P + AKG+ L A+++ A EH IP+ + P L +L QV +N I
Sbjct: 7 VAVALRYDGNSP--PKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 63
Query: 335 PPVFYKAVAQLIYKIY 350
P Y AVAQ++ +Y
Sbjct: 64 PKALYIAVAQILAFLY 79
>gi|33596160|ref|NP_883803.1| putative flagellar protein [Bordetella parapertussis 12822]
gi|33601568|ref|NP_889128.1| putative flagellar protein [Bordetella bronchiseptica RB50]
gi|33573163|emb|CAE36815.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33576004|emb|CAE33084.1| putative flagellar protein [Bordetella bronchiseptica RB50]
Length = 104
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ I
Sbjct: 16 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 73
Query: 335 PPVFYKAVAQLIYKIYHKK 353
PP Y AVA+L+ +Y +
Sbjct: 74 PPQLYTAVAELLAWLYRLE 92
>gi|307611462|emb|CBX01131.1| hypothetical protein LPW_28301 [Legionella pneumophila 130b]
Length = 88
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+ALRY P + AKG+ L A+++ A EH IP+ + P L +L QV +N I
Sbjct: 7 VAVALRYDGNSP--PKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVHLNEEI 63
Query: 335 PPVFYKAVAQLIYKIY 350
P Y AVAQ++ +Y
Sbjct: 64 PKALYIAVAQILAFLY 79
>gi|255322604|ref|ZP_05363749.1| FlhB domain protein [Campylobacter showae RM3277]
gi|255300512|gb|EET79784.1| FlhB domain protein [Campylobacter showae RM3277]
Length = 89
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L L +V +N
Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLIEVL-SKVDLNE 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
+PP YKAVA++ +Y
Sbjct: 66 EVPPNLYKAVAEIFNFLYQM 85
>gi|185177885|pdb|3BZL|C Chain C, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177887|pdb|3BZL|D Chain D, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177889|pdb|3BZO|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177903|pdb|3C00|B Chain B, Crystal Structural Of The Mutated G247t EscuSPAS C-
Terminal Domain
Length = 83
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K +
Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|311105963|ref|YP_003978816.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
gi|310760652|gb|ADP16101.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
Length = 105
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP
Sbjct: 19 AVAISYE-DKDGAPRVVAKGYGQLADTIVRAAQENGLYVHESRELV-GLLMQVDLDAHIP 76
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVA+L+ +Y +
Sbjct: 77 PQLYVAVAELLAWLYRLE 94
>gi|89894622|ref|YP_518109.1| hypothetical protein DSY1876 [Desulfitobacterium hafniense Y51]
gi|219669058|ref|YP_002459493.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
gi|89334070|dbj|BAE83665.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539318|gb|ACL21057.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
Length = 88
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL Y Q+ AP +VAKG +A+K+ + A E+ IPI ++ L +L + V IP
Sbjct: 5 AAALAYDQS--GAPKVVAKGTGEVARKIIEQAIEYGIPIQKDEVLVETLMR-VEYGEEIP 61
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ VA+L+ +Y
Sbjct: 62 PQLYQVVAELLAFVYRL 78
>gi|33592505|ref|NP_880149.1| putative flagellar protein [Bordetella pertussis Tohama I]
gi|33572151|emb|CAE41695.1| putative flagellar protein [Bordetella pertussis Tohama I]
gi|332381923|gb|AEE66770.1| putative flagellar protein [Bordetella pertussis CS]
Length = 108
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ I
Sbjct: 20 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 77
Query: 335 PPVFYKAVAQLIYKIYHKK 353
PP Y AVA+L+ +Y +
Sbjct: 78 PPQLYTAVAELLAWLYRLE 96
>gi|187478213|ref|YP_786237.1| flagellar biosynthesis protein [Bordetella avium 197N]
gi|115422799|emb|CAJ49327.1| putative flagellar biosynthesis protein [Bordetella avium 197N]
Length = 97
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+ A+A+ Y + AP +VAKG +A+ + + A EH++ + E P L L QV ++S
Sbjct: 10 NTAVAISYD-EADGAPRVVAKGYGQMAETIVRTAREHDLYVHESPELV-GLLMQVDLDSH 67
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP Y AVA+L+ +Y
Sbjct: 68 IPPALYTAVAELLAWLYR 85
>gi|163782344|ref|ZP_02177342.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
gi|159882377|gb|EDP75883.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
Length = 90
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+RY + ++ AP++VAKG +A+++ ++A + +P+ E+ L +L K + + IP
Sbjct: 8 AVAIRYTEGKDRAPIVVAKGAGELAERIIELAKKEGVPVLEDRHLIEALLK-IEVFEEIP 66
Query: 336 PVFYKAVAQLIYKI 349
PV Y+AVA+++ +
Sbjct: 67 PVLYEAVAKVLVFV 80
>gi|332284044|ref|YP_004415955.1| putative flagellar protein [Pusillimonas sp. T7-7]
gi|330427997|gb|AEC19331.1| putative flagellar protein [Pusillimonas sp. T7-7]
Length = 99
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+A+ Y + AP +VAKG +A+ + + A EH + + E P L L QV +++
Sbjct: 13 ASAVAVTYD-KHDAAPRVVAKGYGTVAENIIRSAKEHGLHVHESPELV-GLLMQVDLDAH 70
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y A+A+L+ +Y +
Sbjct: 71 IPPELYLAIAELLAWLYALE 90
>gi|310658875|ref|YP_003936596.1| hypothetical protein CLOST_1571 [Clostridium sticklandii DSM 519]
gi|308825653|emb|CBH21691.1| conserved protein of unknown function [Clostridium sticklandii]
Length = 92
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY E AP +V KGQ +AK++ + A E++IP++++ LA L + I+S IP
Sbjct: 11 AVALRYDMNEFIAPKIVGKGQGEVAKRIIEKAKENDIPVYQDEKLAGQL-SAMEIDSFIP 69
Query: 336 PVFYKAVAQLIYKI 349
Y+AVAQ++ I
Sbjct: 70 EELYEAVAQILAFI 83
>gi|89098659|ref|ZP_01171541.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
gi|89086621|gb|EAR65740.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
Length = 99
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +AP + AKG+ L A+ + + A EHNIPI E+ SL L ++ I+ IP
Sbjct: 12 AVALSYRDGQ-EAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLV-ELLGKLNIDENIP 69
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA++ +Y
Sbjct: 70 EELYQAVAEIFAFVYK 85
>gi|209963527|ref|YP_002296442.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
centenum SW]
gi|209956993|gb|ACI97629.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
centenum SW]
Length = 109
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL Y Q + P +VA G+ +A+++ +A+ H +P+ E+ LAR L + +
Sbjct: 11 ARAAALTYEQGSDALPRVVASGRGAVAERIVDLAFLHGVPVREDADLARVL-AAIDPGTE 69
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP AVA+++ +Y
Sbjct: 70 IPPDAIMAVAEVLAHLYRL 88
>gi|220928169|ref|YP_002505078.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
gi|219998497|gb|ACL75098.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
Length = 98
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP +VA G+ IA+++ + A E N+P++++ +LA++L + I IP
Sbjct: 13 AAALQYSPDTDSAPKIVAAGKGQIAERIIQKAQETNVPLYQDSNLAQTL-SSLCIGDEIP 71
Query: 336 PVFYKAVAQLIYKI 349
P Y+ VA+++ I
Sbjct: 72 PEIYEVVAEILIFI 85
>gi|330808246|ref|YP_004352708.1| FlhB domain-containing protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376354|gb|AEA67704.1| Conserved hypothetical protein, FlhB domain-containing protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 109
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y + AP L AKG +A+++ +IA E +PI+E L + L ++ + +
Sbjct: 8 RQAIALKYD--GHHAPTLTAKGDEALAEEILRIARESEVPIYENAELVK-LLARMELGDS 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I ++ K
Sbjct: 65 IPEELYRTIAEIIAFAWNLK 84
>gi|330894459|gb|EGH27120.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
mori str. 301020]
Length = 148
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 3/148 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K+I DA +G S++ ++ L + + + L +
Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + LS + + +L + S +Q + +K
Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSVGMAML---MRLVSSWMQIGFLFAPKALKLDIN 119
Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKII 156
+++ K+++S N++N + S +K +
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAV 147
>gi|212639580|ref|YP_002316100.1| hypothetical protein Aflv_1754 [Anoxybacillus flavithermus WK1]
gi|212561060|gb|ACJ34115.1| Uncharacterized protein containing cytoplasmic domain of flagellar
protein FhlB [Anoxybacillus flavithermus WK1]
Length = 87
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y ++ APV+VAKG+ +A ++ + A ++++PI+E+ +LA L Q+ +N
Sbjct: 4 KRAVALSYD-EQHIAPVVVAKGEGAVADRIIERAKQYDVPIYEDETLATML-GQLQLNET 61
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP YK VA++ IY
Sbjct: 62 IPEELYKVVAEVFAFIYQ 79
>gi|225620909|ref|YP_002722167.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
WA1]
gi|225215729|gb|ACN84463.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
WA1]
Length = 89
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL Y + ++AP++V+KG N +AK+M IA +H +P+ + A+ L Q+ I
Sbjct: 9 KNAAALLYNREIHNAPIVVSKGNNYLAKRMVDIARKHKVPVISDEDTAKHL-MQLEIGEE 67
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+AV+ ++ IY K
Sbjct: 68 IPYSLYEAVSIILKYIYKLK 87
>gi|261885341|ref|ZP_06009380.1| FlhB domain-containing protein [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 87
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +++P ++A G+ +A K+ + A +H IPI E+ L + ++ IN IP
Sbjct: 7 AVALGYNKKRDNSPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLV-EILSKIDINQEIP 65
Query: 336 PVFYKAVAQLIYKIYH 351
P YKAVA++ +Y
Sbjct: 66 PNLYKAVAEVFSFLYR 81
>gi|229589274|ref|YP_002871393.1| hypothetical protein PFLU1756 [Pseudomonas fluorescens SBW25]
gi|229361140|emb|CAY48003.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 109
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL+Y + AP L A+G + +A+ + K+A E+ +PI+E L + L ++ +
Sbjct: 6 PPRQAIALKYDGQQ--APTLTARGDDALAEAILKLARENEVPIYENAELVK-LLARMELG 62
Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
+IP Y+ +A++I + K
Sbjct: 63 DSIPEELYRTIAEIIAFAWTLK 84
>gi|182419087|ref|ZP_02950341.1| flagella-associated protein [Clostridium butyricum 5521]
gi|237669411|ref|ZP_04529393.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377042|gb|EDT74612.1| flagella-associated protein [Clostridium butyricum 5521]
gi|237655298|gb|EEP52856.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 85
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A AL+Y + AP + A G IA K+ + A E+N+PI L L V +
Sbjct: 2 NQRKKAAALKYEFNSD-APTVAASGMGYIADKIIEKAEENNVPIVYNKELTD-LLCNVDV 59
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ IP Y+AVA +I I
Sbjct: 60 GTEIPEELYEAVAHVIAFI 78
>gi|148546777|ref|YP_001266879.1| flagellar protein FhlB-like protein [Pseudomonas putida F1]
gi|148510835|gb|ABQ77695.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Pseudomonas putida F1]
Length = 112
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ +
Sbjct: 7 RQAIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLELGDQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I + +
Sbjct: 64 IPEALYLTIAEIIAFAWQLR 83
>gi|222823585|ref|YP_002575159.1| flagellar biosynthesis protein [Campylobacter lari RM2100]
gi|222538807|gb|ACM63908.1| conserved hypothetical protein, possible flagellar biosynthesis
protein [Campylobacter lari RM2100]
Length = 96
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + + +AP ++A + A K+ +A E+ IPI E+ L L ++ +
Sbjct: 5 TKKAVALGYNKEDQNAPKILANAKGENAAKIISLAKENGIPIKEDKDLVEVL-SKLDLGD 63
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IPP YKAVA++ +Y
Sbjct: 64 EIPPNMYKAVAEIFAFLYK 82
>gi|188996729|ref|YP_001930980.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931796|gb|ACD66426.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 87
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY + + AP +VAKG+ +IA+++ ++A +H + + E+P+L L + + IP
Sbjct: 8 AVALRYERYRDSAPKVVAKGKGIIAERIIEVAKQHGVYLKEDPTLVEVL-SGLELYEEIP 66
Query: 336 PVFYKAVAQLIYKIYHKK 353
YK +A++ IY K
Sbjct: 67 EELYKVIAEIFVLIYQAK 84
>gi|124384516|ref|YP_001028101.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia mallei NCTC 10229]
gi|254201857|ref|ZP_04908221.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei FMH]
gi|254207188|ref|ZP_04913539.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei JHU]
gi|147747751|gb|EDK54827.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei FMH]
gi|147752730|gb|EDK59796.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei JHU]
Length = 127
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKK 302
+ A S + + T N A L Y + AP +VAKG L+A++
Sbjct: 1 MGRAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAKGYGLVAER 58
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + A + + + P + SL QV +++ IPP Y+AVA+L+ +Y +
Sbjct: 59 IIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 108
>gi|313682765|ref|YP_004060503.1| type iii secretion exporter [Sulfuricurvum kujiense DSM 16994]
gi|313155625|gb|ADR34303.1| type III secretion exporter [Sulfuricurvum kujiense DSM 16994]
Length = 83
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY +T+ DAP +VAKG+ A+ + KIA HN+PI ++ L L +V ++ IP
Sbjct: 4 AVALRYDRTKEDAPRVVAKGKGASAENIIKIAELHNLPIHKDEDLV-ELLSKVELDKEIP 62
Query: 336 PVFYKAVAQLIYKIYHK 352
Y AV ++ IY
Sbjct: 63 EKLYVAVVEVFGFIYKI 79
>gi|291288699|ref|YP_003505515.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
12809]
gi|290885859|gb|ADD69559.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
12809]
Length = 90
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A A+RY + + P LVAKGQ LIA K+ A EH++ I E+ L +L + + IP
Sbjct: 8 AAAIRYDKDIDKVPKLVAKGQGLIADKIIAKAKEHDVHITEDKDLVEAL-STLDLYEEIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
YK VA L+ ++Y
Sbjct: 67 EELYKVVAYLLAELYKI 83
>gi|308048779|ref|YP_003912345.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799]
gi|307630969|gb|ADN75271.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799]
Length = 105
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
N T A+AL Y DAP +VA G+ +A+++R+ A E + + ++ LA L Q+
Sbjct: 7 GNATDKAVALGYDGK--DAPKVVASGEGELARQIRQAAEEAGVLVHQDAQLAH-LLSQLE 63
Query: 330 INSAIPPVFYKAVAQLIYKIY 350
+ +IPP Y +A+LI Y
Sbjct: 64 LGQSIPPALYVVIAELIAYAY 84
>gi|185177897|pdb|3BZX|B Chain B, Crystal Structure Of The Mutated H265a Escu C-Terminal
Domain
Length = 83
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PT A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K +
Sbjct: 1 PTAIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|189426369|ref|YP_001953546.1| FlhB domain protein [Geobacter lovleyi SZ]
gi|189422628|gb|ACD97026.1| FlhB domain protein [Geobacter lovleyi SZ]
Length = 91
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL Y Q APV+VAKG+ ++A+ + A E + + E P L +L QV ++
Sbjct: 11 RMAAALSYKQGFY-APVVVAKGKGIMAEAIIACAKEAGVYVHESPELV-TLLMQVDLDEH 68
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+AVA+++ IY +
Sbjct: 69 IPAELYRAVAEILVWIYKME 88
>gi|34499326|ref|NP_903541.1| flagellar biosynthesis-like protein [Chromobacterium violaceum ATCC
12472]
gi|34105177|gb|AAQ61533.1| probable flagellar biosynthesis-related protein [Chromobacterium
violaceum ATCC 12472]
Length = 112
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + + P +VAKG +A+++ A + + + + P L SL QV ++
Sbjct: 11 RSAVALSYKEGQRS-PRVVAKGYGQMAQRIIDCAQDAGVFVHDSPELV-SLLMQVDLDKH 68
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+++ IY+ +
Sbjct: 69 IPPELYRAVAEILAFIYYLE 88
>gi|126438997|ref|YP_001057280.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
668]
gi|126218490|gb|ABN81996.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
668]
Length = 105
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 268 IITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+ P A L Y + AP +VAKG L+A+++ + A + + + P + SL
Sbjct: 1 MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
QV +++ IPP Y+AVA+L+ +Y +
Sbjct: 60 QVDLDARIPPQLYQAVAELLAWLYALE 86
>gi|185177895|pdb|3BZV|B Chain B, Crystal Structural Of The Mutated T264a Escu C-Terminal
Domain
Length = 83
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P H A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K +
Sbjct: 1 PAHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|73538920|ref|YP_299287.1| putative flagellar protein [Ralstonia eutropha JMP134]
gi|72122257|gb|AAZ64443.1| putative flagellar protein [Ralstonia eutropha JMP134]
Length = 93
Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP +VAKG ++A+ + A E + + P+L L QV ++S IP
Sbjct: 11 AIALSYQTD-DKAPRVVAKGYGVVAEAIIARAREAGVYVHGSPTLVN-LLMQVDLDSHIP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y A+A+L+ +Y +
Sbjct: 69 PQLYVAIAELLAWLYQLE 86
>gi|120554879|ref|YP_959230.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Marinobacter aquaeolei VT8]
gi|120324728|gb|ABM19043.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Marinobacter aquaeolei VT8]
Length = 106
Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y APV+ A G +A+++ +IA ++N+P++E LA + ++ +N IP
Sbjct: 12 AVALKYDGE--RAPVISATGTWELAEEIIRIARDNNVPLYENAELA-GILARLSLNEEIP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ +A+++ +H +
Sbjct: 69 EELYRVIAEILAFAFHIR 86
>gi|144900470|emb|CAM77334.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
MSR-1]
Length = 122
Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+AL+Y + DAP + A G+ +A+++ ++A+ + + + +P LA+ L V +++
Sbjct: 28 GAIAVALQYDPDQADAPTVTASGKGAVAEQILQLAFANGVKVRTDPDLAQVL-AAVEVDT 86
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IP + AVA+++ +Y
Sbjct: 87 VIPLEAFAAVAEILAYVYR 105
>gi|15615036|ref|NP_243339.1| flagellar biosynthesis [Bacillus halodurans C-125]
gi|10175093|dbj|BAB06192.1| flagellar biosynthesis [Bacillus halodurans C-125]
Length = 92
Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+A+RY + + AP ++ KG+ L+A ++ K A E +PI ++PSL L Q+ IN
Sbjct: 8 RQAVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLV-ELLGQLEINET 66
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+ VA+L IY
Sbjct: 67 IPEELYEVVAELFAFIYQI 85
>gi|307721269|ref|YP_003892409.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
16294]
gi|306979362|gb|ADN09397.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
16294]
Length = 85
Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +N APV+ AKG+ A+K+ KIA EH +PI ++ L L +V +N +P
Sbjct: 5 AVALTYDKEKNRAPVISAKGKGTTAQKIIKIAKEHGVPIKKDEDLI-ELLSKVELNKEVP 63
Query: 336 PVFYKAVAQLIYKIYHK 352
P YKA+A++ IY
Sbjct: 64 PQMYKAIAEVFSFIYSI 80
>gi|154250425|ref|YP_001411250.1| flagellar biosynthetic protein (FlhB)-like protein
[Fervidobacterium nodosum Rt17-B1]
gi|154154361|gb|ABS61593.1| flagellar biosynthetic protein (FlhB)-like protein
[Fervidobacterium nodosum Rt17-B1]
Length = 96
Score = 92.2 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y ++ AP +VAKG+ +A+ + K A E N+PI + P L LF+ + I
Sbjct: 16 KLAVALKYQMGKDFAPFVVAKGRCQLAEAIIKKAEESNVPIVKSPDLVEELFR-LDILEM 74
Query: 334 IPPVFYKAVAQLIYKI 349
IP Y AVA+++ +
Sbjct: 75 IPSKLYVAVAEVLAFV 90
>gi|53717877|ref|YP_106863.1| putative export system protein [Burkholderia pseudomallei K96243]
gi|76809013|ref|YP_331835.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia pseudomallei 1710b]
gi|126452833|ref|YP_001064522.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
1106a]
gi|134283659|ref|ZP_01770358.1| flagellar biosynthesis protein-like protein [Burkholderia
pseudomallei 305]
gi|167717608|ref|ZP_02400844.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
DM98]
gi|167736651|ref|ZP_02409425.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
14]
gi|167813749|ref|ZP_02445429.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
91]
gi|167822265|ref|ZP_02453736.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
9]
gi|167843859|ref|ZP_02469367.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
B7210]
gi|167892359|ref|ZP_02479761.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
7894]
gi|167900856|ref|ZP_02488061.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
NCTC 13177]
gi|167909073|ref|ZP_02496164.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
112]
gi|167917114|ref|ZP_02504205.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
BCC215]
gi|217425046|ref|ZP_03456542.1| FlhB domain protein [Burkholderia pseudomallei 576]
gi|226199749|ref|ZP_03795300.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
Pakistan 9]
gi|237810417|ref|YP_002894868.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
pseudomallei MSHR346]
gi|242314705|ref|ZP_04813721.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
1106b]
gi|254182179|ref|ZP_04888776.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
1655]
gi|254188109|ref|ZP_04894621.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254196973|ref|ZP_04903397.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
S13]
gi|254259290|ref|ZP_04950344.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
1710a]
gi|254295778|ref|ZP_04963235.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
406e]
gi|52208291|emb|CAH34223.1| putative export system protein [Burkholderia pseudomallei K96243]
gi|76578466|gb|ABA47941.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
pseudomallei 1710b]
gi|126226475|gb|ABN90015.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
1106a]
gi|134245068|gb|EBA45163.1| flagellar biosynthesis protein-like protein [Burkholderia
pseudomallei 305]
gi|157805669|gb|EDO82839.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
406e]
gi|157935789|gb|EDO91459.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
Pasteur 52237]
gi|169653716|gb|EDS86409.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
S13]
gi|184212717|gb|EDU09760.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
1655]
gi|217392066|gb|EEC32092.1| FlhB domain protein [Burkholderia pseudomallei 576]
gi|225928100|gb|EEH24136.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
Pakistan 9]
gi|237505628|gb|ACQ97946.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
pseudomallei MSHR346]
gi|242137944|gb|EES24346.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
1106b]
gi|254217979|gb|EET07363.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
1710a]
Length = 105
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 268 IITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+ P A L Y + AP +VAKG L+A+++ + A + + + P + SL
Sbjct: 1 MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
QV +++ IPP Y+AVA+L+ +Y +
Sbjct: 60 QVDLDARIPPQLYQAVAELLAWLYALE 86
>gi|269792960|ref|YP_003317864.1| FhlB domain-containing flagellar protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100595|gb|ACZ19582.1| flagellar protein with uncharacterized cytoplasmic FhlB domain-like
protein [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 98
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY + + APV++A G+ +A+++ ++A E ++PI E+ + + + IP
Sbjct: 15 AAALRYDEERDRAPVVMASGRGHVAERILEVAREASVPIVEDAA-LVGALLALEVGEEIP 73
Query: 336 PVFYKAVAQLIYKIY 350
P Y AVA+++ +
Sbjct: 74 PELYGAVAKVLAFVM 88
>gi|118443083|ref|YP_877449.1| flagella-associated protein [Clostridium novyi NT]
gi|118133539|gb|ABK60583.1| flagella-associated protein [Clostridium novyi NT]
Length = 90
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP++ A G +A K+ + A ++ +P+ LA L V + S IP
Sbjct: 9 AAALKYEMNYD-APIVSAAGMGYVADKIIEEAKKNEVPVVYNKELA-ELLTNVDVGSYIP 66
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA++I I
Sbjct: 67 EELYNAVAEVIAYIM 81
>gi|254517947|ref|ZP_05130003.1| flagella-associated protein [Clostridium sp. 7_2_43FAA]
gi|226911696|gb|EEH96897.1| flagella-associated protein [Clostridium sp. 7_2_43FAA]
Length = 84
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y AP + A G IA K+ + A E+++PI L L V I IP
Sbjct: 7 AAALKYE-ENLIAPTVTASGMGHIADKILEKAEENDVPIVYNKELTD-LLCNVDIGEYIP 64
Query: 336 PVFYKAVAQLIYKI 349
Y+AVA +I +
Sbjct: 65 SDLYEAVAHIIAYV 78
>gi|192361951|ref|YP_001982536.1| FlhB domain-containing protein [Cellvibrio japonicus Ueda107]
gi|190688116|gb|ACE85794.1| FlhB domain protein [Cellvibrio japonicus Ueda107]
Length = 100
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y +AP + AKG +A+++ IA EH +P+ + PSL L + + +P
Sbjct: 12 AVALFYD--GVNAPQVTAKGAGKVAEEIIAIAQEHGVPLCDNPSLVD-LLVNLELGDEVP 68
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y AVA +I Y +
Sbjct: 69 EALYIAVAYIIAFAYQLE 86
>gi|83594159|ref|YP_427911.1| hypothetical protein Rru_A2827 [Rhodospirillum rubrum ATCC 11170]
gi|83577073|gb|ABC23624.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 123
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+AL Y P ++A G+ +A ++ +A+ H + + ++ LAR L V ++S
Sbjct: 27 SLAIALAYEPVDGAPPPRVIATGRGAVADQIIALAFAHGVKVRQDADLARVL-SAVDLDS 85
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IP + AVA+++ +Y
Sbjct: 86 EIPVEAFVAVAEILAYVYR 104
>gi|313497828|gb|ADR59194.1| Flagellar protein FhlB-like protein [Pseudomonas putida BIRD-1]
Length = 112
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ +
Sbjct: 7 RQAIALNYD--GHQAPTLTAKGDEELAEAILALAREHEVPIYENAELVR-LLARLELGDQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I +H +
Sbjct: 64 IPEALYLTIAEIIAFAWHLR 83
>gi|1196944|gb|AAD15121.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 154
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 68/147 (46%)
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
R + D + I+ + L +A ++P + ++ + S ++ + + ++P F
Sbjct: 7 HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ GIKR++S +K+ +K LVG + L ++ M+ ++ +P + +
Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPIVAMGN 126
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWS 214
A V ++++L + + D+ +
Sbjct: 127 ALDLVGLCALLVVLGVIPMVGFDVFFQ 153
>gi|330902019|gb|EGH33340.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 131
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 3/132 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE + K++ DA +G S++ ++A L + + + L +
Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
+ + I + + + + M+ + S +Q + +K
Sbjct: 63 IDRSFAASVELIA---SEGLTVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPN 119
Query: 129 RVSLREGIKRIY 140
+++ K+++
Sbjct: 120 KINPFSHAKQMF 131
>gi|295678020|ref|YP_003606544.1| type III secretion exporter [Burkholderia sp. CCGE1002]
gi|295437863|gb|ADG17033.1| type III secretion exporter [Burkholderia sp. CCGE1002]
Length = 122
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y AP +VAKG L+A + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAHGGEPAPRVVAKGYGLLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPELYQAVAELLAWLHRLE 86
>gi|168185551|ref|ZP_02620186.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
gi|169296547|gb|EDS78680.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
Length = 90
Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP++ A G +A K+ + A + +P+ LA L V + S IP
Sbjct: 9 AAALKYEMNYD-APIVSAAGMGHVADKIIEEAEKSEVPVVYNKELA-ELLTNVDVGSYIP 66
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA++I I
Sbjct: 67 EELYNAVAEVIAYIM 81
>gi|220932827|ref|YP_002509735.1| FlhB domain protein [Halothermothrix orenii H 168]
gi|219994137|gb|ACL70740.1| FlhB domain protein [Halothermothrix orenii H 168]
Length = 95
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY ++++AP +VA G+ IA+K+ + A +H+IPI ++ + +L + + I + IP
Sbjct: 16 AVALRYNTSKDNAPRIVASGKGTIAEKIMETARKHDIPIEKDQDIVDALIR-LNIGTEIP 74
Query: 336 PVFYKAVAQLIYKIYHKK 353
YK +A+++ IY +
Sbjct: 75 QELYKVIAEILSFIYKLE 92
>gi|185177914|pdb|3C03|C Chain C, Crystal Structure Of The Escu C-Terminal Domain With P263a
Mutation,Space Group P 1 21 1
Length = 83
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
TH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K +
Sbjct: 1 ATHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|57505499|ref|ZP_00371427.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
gi|315638835|ref|ZP_07894007.1| FlhB domain protein [Campylobacter upsaliensis JV21]
gi|57016324|gb|EAL53110.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
gi|315481053|gb|EFU71685.1| FlhB domain protein [Campylobacter upsaliensis JV21]
Length = 96
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTE-NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL Y + + AP ++A G+ A K+ +A EH +PI E+ L + ++ + I
Sbjct: 11 AVALGYQREKKESAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLI-EILSKLDLGDEI 69
Query: 335 PPVFYKAVAQLIYKIYHK 352
PP YKAVA++ IY
Sbjct: 70 PPNMYKAVAEVFAFIYQM 87
>gi|254491433|ref|ZP_05104612.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxidans DMS010]
gi|224462911|gb|EEF79181.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxydans DMS010]
Length = 96
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL+Y ++AP + A G+ IA+++ +IA EHNIP+ E+ LA L + + I
Sbjct: 9 RAIALQYD--GDNAPTVTASGEGAIAEEILRIAREHNIPLKEDALLA-ELLSDLNLGEEI 65
Query: 335 PPVFYKAVAQLIYKIY 350
PP+ Y+ +A++I Y
Sbjct: 66 PPMLYRVIAEVIAYAY 81
>gi|77457802|ref|YP_347307.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf0-1]
gi|77381805|gb|ABA73318.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 112
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y N AP L AKG +A+++ +IA + +PI+E L + L ++ + +
Sbjct: 8 RQAIALKYD--GNHAPTLTAKGDEELAEEILRIARDCEVPIYENAELVK-LLARMELGDS 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I ++ K
Sbjct: 65 IPEELYRTIAEIIAFAWNLK 84
>gi|26991019|ref|NP_746444.1| FlhB domain-containing protein [Pseudomonas putida KT2440]
gi|24986048|gb|AAN69908.1|AE016629_10 FlhB domain protein [Pseudomonas putida KT2440]
Length = 112
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ +
Sbjct: 7 RQAIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLELGEQ 63
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I +H +
Sbjct: 64 IPEALYLTIAEIIAFAWHLR 83
>gi|302387748|ref|YP_003823570.1| type III secretion exporter [Clostridium saccharolyticum WM1]
gi|302198376|gb|ADL05947.1| type III secretion exporter [Clostridium saccharolyticum WM1]
Length = 115
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y +N APV+VA G +A+K+ + A E+ +P++E+ SLA ++ Q+ + S +P
Sbjct: 12 AVALKYDDAKNSAPVIVASGMGYMAEKIIETANENGVPVYEDNSLA-TILTQLELGSQVP 70
Query: 336 PVFYKAVAQLIYKIY 350
Y+A+ ++ +Y
Sbjct: 71 EELYQAIVEI--YLY 83
>gi|330960251|gb|EGH60511.1| FlhB domain-containing protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 107
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--SAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|163794135|ref|ZP_02188108.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
gi|159180749|gb|EDP65268.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
Length = 109
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
++AL + + AP ++AKG ++A+++ ++A+++++ + ++P LA+ + + V ++
Sbjct: 17 QVSIALSHDIGSDQAPTVIAKGYGVLAEQILRLAFDNDVKVRKDPDLAQ-ILEVVDVDCE 75
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP + AVA+++ +Y
Sbjct: 76 IPVQAFAAVAEILTYVYRI 94
>gi|239995701|ref|ZP_04716225.1| uncharacterized C-terminal FlhB domain-containing protein
[Alteromonas macleodii ATCC 27126]
Length = 105
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQT-ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
T A+ L+Y + +AP +VAKG +A+ + +A E I I E+P L+ L + +
Sbjct: 7 TKRAIGLKYDGGDKKNAPKVVAKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVG 65
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+L+ Y
Sbjct: 66 QDIPESLYYVIAELLAYSYVL 86
>gi|254785931|ref|YP_003073360.1| FlhB domain-containing protein [Teredinibacter turnerae T7901]
gi|237687521|gb|ACR14785.1| FlhB domain protein [Teredinibacter turnerae T7901]
Length = 95
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y AP + AKG A+++ +IA E +P+ + L L Q+ + +IP
Sbjct: 9 AVALFYDGE--SAPTITAKGSGEQAEEILRIAREAEVPLCDNGPLV-ELLSQLELGDSIP 65
Query: 336 PVFYKAVAQLIYKIYHK 352
Y AVA +I Y
Sbjct: 66 KELYIAVAHIIAFAYQL 82
>gi|254501917|ref|ZP_05114068.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
gi|222437988|gb|EEE44667.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
Length = 97
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T P A+AL Y APV+ AKG AK++ +IA E +PI + P +A +L Q+
Sbjct: 5 TKPEKIAVALEYEDG--GAPVVSAKGTGSAAKRIEEIAREAGVPIEQNPMMAEAL-SQIE 61
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
++ IP Y+AVA L+ I
Sbjct: 62 VDHEIPMELYQAVAVLVGFIMR 83
>gi|325290208|ref|YP_004266389.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
gi|324965609|gb|ADY56388.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
Length = 101
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A AL Y AP +VAKG+ IA+K+ + A E IPI + +L +L V ++
Sbjct: 11 PKEKAAALAY--EHTGAPRVVAKGEGYIAQKIIEKAGEQGIPIQKNEALVNAL-MLVELS 67
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VAQ++ IY
Sbjct: 68 GEIPVELYEVVAQVLAFIYRL 88
>gi|118587806|ref|ZP_01545216.1| flhB-related protein [Stappia aggregata IAM 12614]
gi|118439428|gb|EAV46059.1| flhB-related protein [Stappia aggregata IAM 12614]
Length = 94
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+AL+Y APV+ AKG +A+++ ++A E +PI + P +A +L Q+ +
Sbjct: 7 SGKKLAVALQYESE--GAPVVTAKGTGSMAEQIERLAREAGVPIEQNPMMAEAL-SQIEV 63
Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
+ IP Y+AVA LI I
Sbjct: 64 DQEIPIELYQAVAVLIGFIMR 84
>gi|218458074|ref|ZP_03498165.1| flagellar biosynthesis protein FlhB [Rhizobium etli Kim 5]
Length = 71
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 53/61 (86%)
Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++
Sbjct: 1 MVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRV 60
Query: 350 Y 350
Y
Sbjct: 61 Y 61
>gi|289678892|ref|ZP_06499782.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
FF5]
Length = 107
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--HAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|185177901|pdb|3BZZ|B Chain B, Crystal Structural Of The Mutated R313t EscuSPAS C-
Terminal Domain
Length = 83
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LA SL+K +
Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLYKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|291529230|emb|CBK94816.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Eubacterium rectale M104/1]
Length = 103
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I
Sbjct: 14 DTGKTAVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKI 71
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA+++ +
Sbjct: 72 GDMIPTELYEVVAEILVFVNDL 93
>gi|114320959|ref|YP_742642.1| flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227353|gb|ABI57152.1| Uncharacterized cytoplasmic domain of flagellar protein FhlB-like
protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 119
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP + AKG +A+++ ++A EH++P+ + L ++ Q+ + A
Sbjct: 16 RLAVALEY--GGQGAPRVTAKGAGPLAERIIELAAEHDVPLETDADLV-AVLAQLELEQA 72
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ VA++I Y K
Sbjct: 73 IPESLYRVVAEVIAFAYLVK 92
>gi|302188650|ref|ZP_07265323.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
642]
Length = 107
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--HAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|66046624|ref|YP_236465.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
B728a]
gi|63257331|gb|AAY38427.1| FlhB domain protein [Pseudomonas syringae pv. syringae B728a]
gi|330953816|gb|EGH54076.1| FlhB domain-containing protein [Pseudomonas syringae Cit 7]
gi|330972504|gb|EGH72570.1| FlhB domain-containing protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 107
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--HAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|323703510|ref|ZP_08115156.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
gi|323531501|gb|EGB21394.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
Length = 89
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A ALRY E+ APV+VA G+ +A + KIA EHNIP++++ LAR+L ++ +
Sbjct: 7 KLAAALRYRHGEDAAPVVVAAGKGELAAAIEKIAREHNIPVYQDQHLARTL-TELGLGVE 65
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y+ VA+++ +
Sbjct: 66 IPPELYEVVAKILVHV 81
>gi|116696302|ref|YP_841878.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
gi|113530801|emb|CAJ97148.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 97
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y Q + AP +VAKG ++A+ + A E + I + P+L L QV ++S +P
Sbjct: 11 AIALSY-QHRDRAPRVVAKGYGVVAEAIIARAREAGVYIHDSPTLVN-LLMQVDLDSHVP 68
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y AVA+L+ IYH
Sbjct: 69 PQLYVAVAELLAWIYHL 85
>gi|152997420|ref|YP_001342255.1| hypothetical protein Mmwyl1_3417 [Marinomonas sp. MWYL1]
gi|150838344|gb|ABR72320.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
Length = 82
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y + AP +VAKG L+A+K+ +A E+++ + + P L L + +
Sbjct: 2 QKAVALKYDFS--AAPTVVAKGSGLLAEKILAVAKENDVLLHQSPELVEML-STLELGEE 58
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y AVA++I + K
Sbjct: 59 IPESLYLAVAEVIAFAHRIK 78
>gi|146307815|ref|YP_001188280.1| flagellar protein FhlB-like protein [Pseudomonas mendocina ymp]
gi|145576016|gb|ABP85548.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Pseudomonas mendocina ymp]
Length = 114
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y +APVL AKG + +A+ + IA E+ +PI+E L R L ++ + A
Sbjct: 11 RQAIALNYDGQ--NAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDA 67
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+ +A++I ++
Sbjct: 68 IPEALYRCIAEIIAFAWYL 86
>gi|330899495|gb|EGH30914.1| FlhB domain-containing protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 107
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--HAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|237753416|ref|ZP_04583896.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
BAA-430]
gi|229375683|gb|EEO25774.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
BAA-430]
Length = 94
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y Q + AP ++AKG+ +A+K+ + A E +IP+F+ +L SL + ++
Sbjct: 9 QKAVALAYEQNKQRAPKVIAKGEGFLAEKIIEKAKEFDIPLFQSKALVDSLIH-LELDEE 67
Query: 334 IPPVFYKAVAQLIYKIYH 351
IPP YKAV ++ +Y
Sbjct: 68 IPPTLYKAVVEVFIWLYQ 85
>gi|326796438|ref|YP_004314258.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
gi|326547202|gb|ADZ92422.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
Length = 82
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y +AP + AKG L+A+++ ++A E+++ + E P L L + I IP
Sbjct: 4 AVALQYD--YQNAPKVTAKGSGLLAERIMEVAEENDVLLHESPELVEVL-ATLEIGDEIP 60
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y AVA++I ++ K
Sbjct: 61 ESLYLAVAEIIAFAHNIK 78
>gi|288940399|ref|YP_003442639.1| type III secretion exporter [Allochromatium vinosum DSM 180]
gi|288895771|gb|ADC61607.1| type III secretion exporter [Allochromatium vinosum DSM 180]
Length = 122
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL + + AP + A G L A+++ KIA EH+IP+ +P L +L Q+P+ +
Sbjct: 10 TTKAVALHWDRE--HAPRITATGTGLTAEQILKIAEEHDIPLRADPVLVEAL-AQIPLGA 66
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IP Y AVA+++ ++ +
Sbjct: 67 EIPRALYVAVAEVLAFVFMLE 87
>gi|23016629|ref|ZP_00056383.1| COG2257: Uncharacterized homolog of the cytoplasmic domain of
flagellar protein FhlB [Magnetospirillum magnetotacticum
MS-1]
Length = 117
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL P + A G+ +A+++ ++A+ H + + +P LA L V +++
Sbjct: 26 QVAVALADDPDNPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTV 84
Query: 334 IPPVFYKAVAQLIYKIYH 351
IP + AVA+++ +Y
Sbjct: 85 IPVEAFVAVAEILAYVYR 102
>gi|186477673|ref|YP_001859143.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
gi|184194132|gb|ACC72097.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
Length = 112
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y ++AP +VAKG L+A + + A E + + E P + SL QV ++S
Sbjct: 7 RSAAALVYDSHGHDEAPRVVAKGYGLVADMIVQRAKEAGLYVHESPDMV-SLLMQVDLDS 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPRLYQAVAELLAWLHRLE 86
>gi|257484836|ref|ZP_05638877.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|330986556|gb|EGH84659.1| FlhB domain-containing protein [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011126|gb|EGH91182.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 107
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQQ--APTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|185177899|pdb|3BZY|B Chain B, Crystal Structure Of The Mutated Y316d Escu C-Terminal
Domain
Length = 83
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL K +
Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKG 60
Query: 332 SAIPPVFYKAVAQLIY 347
I F++ VAQLI
Sbjct: 61 QYITEDFFEPVAQLIR 76
>gi|51246336|ref|YP_066220.1| flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila
LSv54]
gi|50877373|emb|CAG37213.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea
psychrophila LSv54]
Length = 86
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY Q E+ AP +VA G+ ++A+ + + + I E+ + L Q+ +N IP
Sbjct: 5 AVALRYHQEEDRAPRVVASGKGIVAENIIETGEAAGVYIQEDRDMV-ELLAQIELNQEIP 63
Query: 336 PVFYKAVAQLIYKIYH 351
Y AV++++ +Y
Sbjct: 64 MELYGAVSEILSFVYK 79
>gi|90021509|ref|YP_527336.1| flagellar protein FhlB-like protein [Saccharophagus degradans 2-40]
gi|89951109|gb|ABD81124.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Saccharophagus degradans 2-40]
Length = 98
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y P++ AKG A+++ +IA E +P+ + L L Q+ + +IP
Sbjct: 14 AVALYYDGENT--PIVTAKGLGEEAQEIIRIAEESGVPLCDNALLV-ELLAQLELGDSIP 70
Query: 336 PVFYKAVAQLIYKIYHKKI 354
Y A+A ++ Y ++
Sbjct: 71 GSLYTAIAHILSFAYQLEL 89
>gi|330502794|ref|YP_004379663.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
gi|328917080|gb|AEB57911.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
Length = 113
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+AL Y APVL AKG + +A+ + IA E+ +PI+E L R L ++ +
Sbjct: 8 EARQAIALNYDGQ--SAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELG 64
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
AIP Y+ +A++I ++
Sbjct: 65 DAIPEALYRCIAEIIAFAWYL 85
>gi|302338392|ref|YP_003803598.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
gi|301635577|gb|ADK81004.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
Length = 84
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP + AKG AK++ +A +H +P+ + L + L+ + + IP
Sbjct: 5 AIALAYDRDTYSAPRITAKGSGEAAKRLIALAKKHGVPVMGDEELVQRLY-LFDLEAVIP 63
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ VA++ +++ +
Sbjct: 64 EDLYEVVAEIYSFVWNLR 81
>gi|157737630|ref|YP_001490313.1| FlhB domain-containing protein [Arcobacter butzleri RM4018]
gi|157699484|gb|ABV67644.1| FlhB domain protein [Arcobacter butzleri RM4018]
Length = 94
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ I
Sbjct: 8 NFIQKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLI-ELLSQIDI 66
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+ IP Y+AVA++ IY
Sbjct: 67 DKEIPTSMYRAVAEIFSFIYDL 88
>gi|28870794|ref|NP_793413.1| FlhB domain-containing protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968921|ref|ZP_03397061.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
gi|301385357|ref|ZP_07233775.1| FlhB domain protein [Pseudomonas syringae pv. tomato Max13]
gi|302061231|ref|ZP_07252772.1| FlhB domain protein [Pseudomonas syringae pv. tomato K40]
gi|302133130|ref|ZP_07259120.1| FlhB domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28854043|gb|AAO57108.1| FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|213926220|gb|EEB59775.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
gi|330879117|gb|EGH13266.1| FlhB domain-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330967862|gb|EGH68122.1| FlhB domain-containing protein [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|331015905|gb|EGH95961.1| FlhB domain protein [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 107
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQQ--APTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|332994252|gb|AEF04307.1| hypothetical protein ambt_13945 [Alteromonas sp. SN2]
Length = 103
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQT-ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+ L+Y + AP +VAKG +A+ + +A E I I E+P L+ L + +
Sbjct: 5 AKRAIGLKYDGGDKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLG 63
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+L+ Y
Sbjct: 64 QDIPESLYFVIAELLAYSYVL 84
>gi|291525311|emb|CBK90898.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Eubacterium rectale DSM 17629]
Length = 103
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I
Sbjct: 16 GKTAVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGD 73
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA+++ +
Sbjct: 74 MIPTELYEVVAEILVFVNDL 93
>gi|71733987|ref|YP_275475.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|289626814|ref|ZP_06459768.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289646515|ref|ZP_06477858.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298487768|ref|ZP_07005809.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71554540|gb|AAZ33751.1| flagellar biosynthetic FlhB domain protein [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|298157860|gb|EFH98939.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320323986|gb|EFW80070.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. glycinea str. B076]
gi|320328122|gb|EFW84127.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330869033|gb|EGH03742.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330876079|gb|EGH10228.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330883294|gb|EGH17443.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 107
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQQ--APTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|237799335|ref|ZP_04587796.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022191|gb|EGI02248.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 107
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALTYDGQQ--APTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|253681686|ref|ZP_04862483.1| flagella-associated protein [Clostridium botulinum D str. 1873]
gi|253561398|gb|EES90850.1| flagella-associated protein [Clostridium botulinum D str. 1873]
Length = 90
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP++ A G IA K+ + A ++ +P+ LA L V + S+IP
Sbjct: 9 AAALKYELNYD-APIVSAAGMGHIADKIVEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA++I I
Sbjct: 67 EELYNAVAEVIAYIM 81
>gi|261855050|ref|YP_003262333.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Halothiobacillus neapolitanus c2]
gi|261835519|gb|ACX95286.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Halothiobacillus neapolitanus c2]
Length = 125
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL+Y + P +VA GQ+L+A+++ A ++P+ E+P+LA L + I
Sbjct: 14 PISRAVALKY--EGTELPQVVATGQHLVAEQIVARAKAADVPLVEDPALADML-ASLDIG 70
Query: 332 SAIPPVFYKAVAQLIYK 348
IP ++AVA+++
Sbjct: 71 DHIPNNLFRAVAEVLSY 87
>gi|315637405|ref|ZP_07892618.1| FlhB domain protein [Arcobacter butzleri JV22]
gi|315478297|gb|EFU69017.1| FlhB domain protein [Arcobacter butzleri JV22]
Length = 94
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ +
Sbjct: 8 NFVQKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLI-ELLSQIDV 66
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
+ IP Y+AVA++ IY
Sbjct: 67 DKEIPTSMYRAVAEIFSFIYDL 88
>gi|126664979|ref|ZP_01735962.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Marinobacter sp. ELB17]
gi|126630349|gb|EBA00964.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Marinobacter sp. ELB17]
Length = 96
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y AP + A G + +A ++ +IA EH +P++E LA +L ++ +N IP
Sbjct: 13 AVALKYDGE--RAPTISAVGNHELADEIIRIAREHGVPLYENAELASTL-ARLSLNDEIP 69
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ VA+++ +H +
Sbjct: 70 EQLYQLVAEILAFAFHIR 87
>gi|209522461|ref|ZP_03271060.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
gi|209497100|gb|EDZ97356.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
Length = 114
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A AL Y AP +VAKG LIA+ + + A E + + E P + SL QV +++ I
Sbjct: 9 AAALVYDAHGGEPAPRVVAKGYGLIAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67
Query: 335 PPVFYKAVAQLIYKIYHKK 353
PP Y+AVA+L+ ++ +
Sbjct: 68 PPQLYQAVAELLAWLHRLE 86
>gi|170696027|ref|ZP_02887164.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
gi|170139019|gb|EDT07210.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
Length = 123
Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP ++AKG ++A + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDANGGDPAPRVIAKGYGMLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPQLYQAVAELLAWLHRLE 86
>gi|291519508|emb|CBK74729.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Butyrivibrio fibrisolvens 16/4]
Length = 96
Score = 89.5 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP ++A G+ +A+++ + A ++++P +++ LA++L ++ I AIP
Sbjct: 13 AVALSYEVG-DAAPKILASGKGYVAEQIIEEAKKNDVPFYQDNELAQTL-SKLNIGDAIP 70
Query: 336 PVFYKAVAQLIYKI 349
P Y+ VA+++ +
Sbjct: 71 PELYEVVAEILVFV 84
>gi|238924650|ref|YP_002938166.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656]
gi|238876325|gb|ACR76032.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656]
Length = 103
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I
Sbjct: 16 GKTAVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGD 73
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y+ VA+++ +
Sbjct: 74 MIPTELYEVVAEILVFVNDL 93
>gi|320015477|gb|ADV99048.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 120
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE + + A L L +++
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
+ L + + ++ + L ++P ++ + ++
Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLG 112
>gi|15644420|ref|NP_229472.1| flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
gi|4982247|gb|AAD36739.1|AE001808_14 flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
Length = 86
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T+ A+AL+Y T AP +VAKG +A+++ ++A H IPI E P + L + +
Sbjct: 3 TDEIKKAVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLR-LD 61
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
+ S IP Y +A++ +
Sbjct: 62 LFSEIPEEMYLVIAEIYAFLKR 83
>gi|196247653|ref|ZP_03146355.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
gi|196212437|gb|EDY07194.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
Length = 95
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP
Sbjct: 8 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLV-ELLSEVEINEAIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
Y VA+L +Y
Sbjct: 67 EGLYALVAELFAFLYQL 83
>gi|331268716|ref|YP_004395208.1| flagella-associated protein [Clostridium botulinum BKT015925]
gi|329125266|gb|AEB75211.1| flagella-associated protein [Clostridium botulinum BKT015925]
Length = 90
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + AP++ A G IA K+ + A ++ +P+ LA L V + S+IP
Sbjct: 9 AAALKYELNYD-APIVSAAGMGRIADKIIEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA++I I
Sbjct: 67 EELYNAVAEVIAYIM 81
>gi|291280386|ref|YP_003497221.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
SSM1]
gi|290755088|dbj|BAI81465.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
SSM1]
Length = 90
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
Y ++ AP LVAKGQ LIA+K+ + A EH + I E+P + + + + IP Y+
Sbjct: 12 YDANKDKAPKLVAKGQGLIAEKIIEKAKEHGVFIKEDPDIV-EILSTLDLFEEIPDKLYQ 70
Query: 341 AVAQLIYKIYHK 352
A+A ++ ++Y
Sbjct: 71 AIANILVEVYKI 82
>gi|49089132|gb|AAT51646.1| PA1473 [synthetic construct]
Length = 112
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + A
Sbjct: 10 RQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDA 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 67 IPEALYRTIAEIIAFAWHLK 86
>gi|150019417|ref|YP_001311671.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
gi|149905882|gb|ABR36715.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
Length = 86
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A AL+Y + APV+ A G IA K+ + A ++ +PI L L V +
Sbjct: 2 NQRKKAAALKYEFNSD-APVVTAAGMGHIADKIIEKATQNEVPIVYNKELTD-LLCNVDV 59
Query: 331 NSAIPPVFYKAVAQLIYKI 349
IP Y+AVA +I +
Sbjct: 60 GDEIPTELYEAVAHVIAFL 78
>gi|260437011|ref|ZP_05790827.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876]
gi|292810320|gb|EFF69525.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876]
Length = 96
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+A++Y E AP ++A G +IA K+ + A ++P++E+ LA +L ++ I
Sbjct: 9 KQAIAIQYNPDEV-APKILASGTGIIADKIIEKAKSSDVPLYEDNKLANTL-SKLDIGEY 66
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IPP Y VA+++ + +
Sbjct: 67 IPPELYSIVAEILVFVDNL 85
>gi|109899563|ref|YP_662818.1| FlhB domain-containing protein [Pseudoalteromonas atlantica T6c]
gi|109701844|gb|ABG41764.1| FlhB domain protein [Pseudoalteromonas atlantica T6c]
Length = 110
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQT-ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+AL++ + + +AP +VAKG +A ++ +A E + I E+P L+ L + +
Sbjct: 12 ARSAVALKHHEGDKKNAPQVVAKGFGDLADEIITLAKESGVLIHEDPYLSEFL-ASLDLG 70
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI Y
Sbjct: 71 QEIPEELYHVIAELISFSYVL 91
>gi|116049416|ref|YP_791781.1| FlhB domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390161|ref|ZP_06879636.1| FlhB domain-containing protein [Pseudomonas aeruginosa PAb1]
gi|115584637|gb|ABJ10652.1| putative FlhB domain protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 111
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + A
Sbjct: 10 RQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDA 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 67 IPEALYRTIAEIIAFAWHLK 86
>gi|238916975|ref|YP_002930492.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
gi|238872335|gb|ACR72045.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
Length = 96
Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y E AP ++A G+ IA+ + + A E ++PI+ + LA +L ++ I
Sbjct: 11 KIAVALEYTPGE-QAPKILATGRGYIAESIIEKAGEADVPIYADSKLADTL-SKLEIGEM 68
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y VA+++ +
Sbjct: 69 IPPELYTVVAEILVFV 84
>gi|83720874|ref|YP_440763.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia thailandensis E264]
gi|167617543|ref|ZP_02386174.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
thailandensis Bt4]
gi|257140587|ref|ZP_05588849.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia thailandensis E264]
gi|83654699|gb|ABC38762.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
thailandensis E264]
Length = 108
Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++
Sbjct: 7 KRAAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ +Y +
Sbjct: 66 RIPPQLYQAVAELLAWLYALE 86
>gi|306821511|ref|ZP_07455113.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550469|gb|EFM38458.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 87
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
+ A+AL+Y E+ AP ++AKG N +AK M + A E +IPI+ + + L + + I
Sbjct: 4 DEIKSAIALKYDSEEDIAPKVIAKGDNYVAKNMVEKAEELDIPIYRDEKIVHQL-RNLEI 62
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
N IP Y+A+AQ++ I
Sbjct: 63 NDNIPQELYEAIAQVLIFITKL 84
>gi|225569990|ref|ZP_03779015.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
15053]
gi|225161460|gb|EEG74079.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
15053]
Length = 117
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + + +PV+VA G +A+K+ + A + +P++E+ SLA +L Q+ + S IP
Sbjct: 12 AVALTYDEDKQASPVIVASGMGYLAEKIVETAEKSGVPVYEDNSLA-TLLTQLDLGSEIP 70
Query: 336 PVFYKAVAQLIYKIY 350
Y+A+ + IY
Sbjct: 71 EELYQAIVDI--YIY 83
>gi|134298145|ref|YP_001111641.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
gi|134050845|gb|ABO48816.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
Length = 90
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A ALRY ++ AP +VA G+ +A + ++A EHNIP++ + +LA +L ++ + +
Sbjct: 7 RVAAALRYHHGKDHAPTVVAVGKGDLATAIERLATEHNIPLYRDETLAHTL-TELGLGTE 65
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y+AVA+++ +
Sbjct: 66 IPPELYEAVAKILIHV 81
>gi|148270251|ref|YP_001244711.1| FlhB domain-containing protein [Thermotoga petrophila RKU-1]
gi|170288949|ref|YP_001739187.1| FlhB domain-containing protein [Thermotoga sp. RQ2]
gi|281412554|ref|YP_003346633.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
gi|147735795|gb|ABQ47135.1| FlhB domain protein [Thermotoga petrophila RKU-1]
gi|170176452|gb|ACB09504.1| FlhB domain protein [Thermotoga sp. RQ2]
gi|281373657|gb|ADA67219.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
Length = 86
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T+ A+AL+Y + AP +VAKG +A+++ ++A + IPI E P + L + +
Sbjct: 3 TDEIKKAVALKYDPSRTSAPEVVAKGVGEVAERIIEVAKRYGIPIEERPDIIDDLLR-LD 61
Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
+ S IP Y +A++ +
Sbjct: 62 LFSEIPEEMYLVIAEIYAFLKR 83
>gi|288573050|ref|ZP_06391407.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568791|gb|EFC90348.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 91
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y + E +AP LVA G IA+++ ++A E +PI E+ + S + I IP
Sbjct: 11 AAALKYDREEREAPHLVASGSGRIAERIVEVAREAEVPIVEDAA-LVSALLALDIGEEIP 69
Query: 336 PVFYKAVAQLIYKIYH 351
Y+AVA+++ IY
Sbjct: 70 LDLYEAVARVLAFIYK 85
>gi|15596670|ref|NP_250164.1| hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
gi|107100906|ref|ZP_01364824.1| hypothetical protein PaerPA_01001936 [Pseudomonas aeruginosa PACS2]
gi|218892654|ref|YP_002441523.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
gi|254234571|ref|ZP_04927894.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
gi|254239822|ref|ZP_04933144.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
gi|313106471|ref|ZP_07792702.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
39016]
gi|9947426|gb|AAG04862.1|AE004576_11 hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
gi|126166502|gb|EAZ52013.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
gi|126193200|gb|EAZ57263.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
gi|218772882|emb|CAW28694.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
gi|310879204|gb|EFQ37798.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
39016]
Length = 111
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + A
Sbjct: 10 RQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDA 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 67 IPEALYRTIAEIIAFAWHLK 86
>gi|307731337|ref|YP_003908561.1| type III secretion exporter [Burkholderia sp. CCGE1003]
gi|307585872|gb|ADN59270.1| type III secretion exporter [Burkholderia sp. CCGE1003]
Length = 123
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 274 HYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAQGGDAAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPQLYQAVAELLAWLHRLE 86
>gi|330818617|ref|YP_004362322.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
gi|327371010|gb|AEA62366.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
Length = 118
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 268 IITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+ + A AL Y + AP +VAKG L+A+ + A E + + P + SL
Sbjct: 1 MSGDKRKRAAALVYDPKGGDAAPRVVAKGYGLVAEMIVARAREAGLYVHTAPEMV-SLLM 59
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
QV ++ IPP Y+AVA+L+ +Y +
Sbjct: 60 QVDLDDRIPPALYQAVAELLAWLYALE 86
>gi|138894728|ref|YP_001125181.1| flagellar biosynthesis protein [Geobacillus thermodenitrificans
NG80-2]
gi|134266241|gb|ABO66436.1| Flagellar biosynthesis [Geobacillus thermodenitrificans NG80-2]
Length = 98
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP
Sbjct: 11 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLV-ELLSEVEINEAIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y VA+L +Y
Sbjct: 70 EGLYALVAELFAFLYQL 86
>gi|53724870|ref|YP_104758.1| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia mallei ATCC 23344]
gi|67641500|ref|ZP_00440277.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei GB8 horse 4]
gi|167001486|ref|ZP_02267281.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei PRL-20]
gi|254174894|ref|ZP_04881555.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei ATCC 10399]
gi|254359693|ref|ZP_04975964.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei 2002721280]
gi|262193313|ref|YP_001082911.2| flagellar biosynthetic protein FlhB domain-containing protein
[Burkholderia mallei NCTC 10247]
gi|52428293|gb|AAU48886.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei ATCC 23344]
gi|148028907|gb|EDK86839.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei 2002721280]
gi|160695939|gb|EDP85909.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei ATCC 10399]
gi|238522443|gb|EEP85887.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei GB8 horse 4]
gi|243062693|gb|EES44879.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei PRL-20]
gi|261825984|gb|ABN01805.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei NCTC 10229]
gi|261835037|gb|ABO04245.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
mallei NCTC 10247]
Length = 95
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 279 LRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP
Sbjct: 2 LAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQ 60
Query: 338 FYKAVAQLIYKIYHKK 353
Y+AVA+L+ +Y +
Sbjct: 61 LYQAVAELLAWLYALE 76
>gi|330888994|gb|EGH21655.1| FlhB domain-containing protein [Pseudomonas syringae pv. mori str.
301020]
Length = 107
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSY--GGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|240147023|ref|ZP_04745624.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82]
gi|257200815|gb|EEU99099.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82]
gi|291535190|emb|CBL08302.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Roseburia intestinalis M50/1]
gi|291539720|emb|CBL12831.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Roseburia intestinalis XB6B4]
Length = 104
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y + AP ++A G+ +A+++ + A E+++P +++ LA +L ++ I IP
Sbjct: 17 AVAVAYEPG-DAAPKILAAGKGEVAERIIEKAKENDVPFYQDNKLAETL-SKLQIGDTIP 74
Query: 336 PVFYKAVAQLIYKI 349
P Y VA+++ +
Sbjct: 75 PELYDVVAEILVFV 88
>gi|327441037|dbj|BAK17402.1| flagellar biosynthesis pathway, component FlhB [Solibacillus
silvestris StLB046]
Length = 155
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 56/133 (42%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE + KK +D+ +G S++ + +L +LLFF + L L
Sbjct: 16 GEKTEKATPKKRQDSRKKGQVLKSQDVTAAVLLLLSFFFLLFFAPFMYEGMKDFLLQALN 75
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + ++ + + +V+P +++ ++ GIG+ Q + +K
Sbjct: 76 RNMLIETLNAETVMDMYVESIKEMAIIVLPIMVIAIIAGIGANFFQFGLLFTTETLKIDL 135
Query: 128 KRVSLREGIKRIY 140
K+ +G KR++
Sbjct: 136 KKWIRLKGSKRLF 148
>gi|167579446|ref|ZP_02372320.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
thailandensis TXDOH]
Length = 108
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++
Sbjct: 7 KRAAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ +Y +
Sbjct: 66 RIPPQLYQAVAELLAWLYALE 86
>gi|296126255|ref|YP_003633507.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
gi|296018071|gb|ADG71308.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
Length = 87
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A A+ Y + ++APV++AKG++ +AK+M + A+++ +P+ + A L Q+ I IP
Sbjct: 9 AAAILYNRDIHNAPVVIAKGRHYLAKRMAETAHKNKVPVVSDEKTAHHL-MQLEIGEEIP 67
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+AV+ ++ IY K
Sbjct: 68 YSLYEAVSIILKYIYKLK 85
>gi|239817130|ref|YP_002946040.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
gi|239803707|gb|ACS20774.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
Length = 97
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A+AL + APV+VAKG + A+ + + A E+ + + P L R L QV ++
Sbjct: 7 PRQSAVALSH-ADTAKAPVVVAKGYGVTAESILRQARENGVYVHASPDLIR-LLMQVDLD 64
Query: 332 SAIPPVFYKAVAQLIYKI 349
IPP Y AVA+++ I
Sbjct: 65 RQIPPQLYLAVAEVMAWI 82
>gi|312879569|ref|ZP_07739369.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
gi|310782860|gb|EFQ23258.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
Length = 94
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY + APV+VA G+ ++A+++ +IA E IP+ E+ + S + + IP
Sbjct: 10 AAALRYEEGHESAPVVVASGKGVLAERIVEIAREAQIPVVEDAA-LVSALLALELGEEIP 68
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+AVA+++ +Y
Sbjct: 69 PELYQAVARVLVFVYDL 85
>gi|167568373|ref|ZP_02361247.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
C6786]
Length = 107
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++
Sbjct: 7 KSAAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ +Y +
Sbjct: 66 RIPPQLYQAVAELLAWLYALE 86
>gi|167561155|ref|ZP_02354071.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
EO147]
Length = 105
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++
Sbjct: 7 KSAAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ +Y +
Sbjct: 66 RIPPQLYQAVAELLAWLYALE 86
>gi|83309712|ref|YP_419976.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Magnetospirillum magneticum AMB-1]
gi|82944553|dbj|BAE49417.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Magnetospirillum magneticum AMB-1]
Length = 117
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
+AL P + A G+ +A+++ ++A+ H + + +P LA L V +++ IP
Sbjct: 29 VALADDPDHPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPV 87
Query: 337 VFYKAVAQLIYKIYH 351
+ AVA+++ +Y
Sbjct: 88 EAFVAVAEILAYVYR 102
>gi|160880531|ref|YP_001559499.1| flagellar protein FhlB-like protein [Clostridium phytofermentans
ISDg]
gi|160429197|gb|ABX42760.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Clostridium phytofermentans ISDg]
Length = 122
Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A+ Y ++ AP ++A G+N++A K+ + A E +IPI ++ LA +L ++ + IP
Sbjct: 34 AVAISYDP-KDPAPRIIASGKNILADKIIEKALEEDIPIHKDVPLANTL-SKLELGDCIP 91
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y V+Q++ +
Sbjct: 92 PELYGIVSQVLLFVDRM 108
>gi|221199692|ref|ZP_03572735.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD2M]
gi|221208703|ref|ZP_03581703.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD2]
gi|221215527|ref|ZP_03588490.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD1]
gi|221164515|gb|EED96998.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD1]
gi|221171514|gb|EEE03961.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD2]
gi|221179931|gb|EEE12335.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
multivorans CGD2M]
Length = 105
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG +A+ + A E + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKEAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|87119456|ref|ZP_01075353.1| FlhB domain protein [Marinomonas sp. MED121]
gi|86164932|gb|EAQ66200.1| FlhB domain protein [Marinomonas sp. MED121]
Length = 80
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP + AKG LIA+++ ++A E+NI + + P L L + + IP
Sbjct: 5 AIALNYDF--HGAPTITAKGSGLIAERIMQVAEENNIILHKSPELVEVL-GHLELGDEIP 61
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y AVA++I + K
Sbjct: 62 EALYLAVAEIIAFAHSLK 79
>gi|238028882|ref|YP_002913113.1| putative flagellar protein FhlB [Burkholderia glumae BGR1]
gi|237878076|gb|ACR30409.1| Putative flagellar protein FhlB [Burkholderia glumae BGR1]
Length = 129
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A AL Y + AP +VAKG L+A+ + A E + + P + SL QV ++ I
Sbjct: 10 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARESGLYVHTAPEMV-SLLMQVDLDDRI 68
Query: 335 PPVFYKAVAQLIYKIYHKK 353
PP Y+AVA+L+ +Y +
Sbjct: 69 PPALYRAVAELLAWLYALE 87
>gi|78776339|ref|YP_392654.1| FlhB domain-containing protein [Sulfurimonas denitrificans DSM
1251]
gi|78496879|gb|ABB43419.1| FlhB domain protein [Sulfurimonas denitrificans DSM 1251]
Length = 83
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P
Sbjct: 4 AAALRYDVEKEGAPRVVAKGQGRSAENIIKIAQLHNLPIRKDEDLI-ELLSKVELDKEVP 62
Query: 336 PVFYKAVAQLIYKIYHK 352
YKAVA++ IY
Sbjct: 63 SALYKAVAEVFSFIYKI 79
>gi|152985566|ref|YP_001349208.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
aeruginosa PA7]
gi|150960724|gb|ABR82749.1| flagellar biosynthetic FlhB domain protein [Pseudomonas aeruginosa
PA7]
Length = 111
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + A
Sbjct: 10 RQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDA 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 67 IPEALYRTIAEIIAFAWHLK 86
>gi|224436936|ref|ZP_03657917.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
gi|313143408|ref|ZP_07805601.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
gi|313128439|gb|EFR46056.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
Length = 91
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++AP +VAKGQN IA K+ A E ++P+F P L +SL Q+P++S IP
Sbjct: 6 AVALAYNAEFDNAPRVVAKGQNDIALKIIAKAKEFDVPLFSNPLLVQSLL-QIPLDSHIP 64
Query: 336 PVFYKAVAQLIYKIYH 351
P Y AV ++ +
Sbjct: 65 PEMYNAVVEVFVWLLQ 80
>gi|309389531|gb|ADO77411.1| FlhB domain protein [Halanaerobium praevalens DSM 2228]
Length = 89
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
+AL+Y Q + AP ++A G+ IA+ + K A E NIPI ++ + + L ++ I IP
Sbjct: 9 TVALKYDQKNDQAPRIIASGKGSIAEMIIKKAKEENIPIKKDKDVVQVL-AELNIGEQIP 67
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y +A+++ Y +
Sbjct: 68 EELYTVIAEILSFFYDLE 85
>gi|225174800|ref|ZP_03728798.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Dethiobacter alkaliphilus AHT 1]
gi|225169927|gb|EEG78723.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Dethiobacter alkaliphilus AHT 1]
Length = 89
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y + ++DAP +VA+G IA+++ +A EH +P+ + LA +L V IP
Sbjct: 9 AVALQYQEEKDDAPRVVARGAGKIAEQILLLAQEHGVPVKQSKVLAETL-SLVEPGDEIP 67
Query: 336 PVFYKAVAQLIYKI 349
Y AVAQ++ ++
Sbjct: 68 EGLYLAVAQIMSEV 81
>gi|167835063|ref|ZP_02461946.1| putative flagellar biosynthesis protein [Burkholderia thailandensis
MSMB43]
Length = 108
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A L Y + AP +VAKG L+A+++ + A + + + P + SL QV +++
Sbjct: 7 KRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ +Y +
Sbjct: 66 RIPPQLYRAVAELLAWLYALE 86
>gi|115353155|ref|YP_774994.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
gi|115283143|gb|ABI88660.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
Length = 106
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYSL 85
>gi|330976060|gb|EGH76126.1| FlhB domain-containing protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 107
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
ALAL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQALALSYDGQ--HAPTLSAKGDDQLAEAILAIAPEYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|330940611|gb|EGH43653.1| FlhB domain-containing protein [Pseudomonas syringae pv. pisi str.
1704B]
Length = 107
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP L AKG +A+ + IA E+ +PI+E L + L ++ + +
Sbjct: 9 RQAIALSYDGQ--HAPTLSAKGDEQLAEAILAIAREYEVPIYENAELVK-LLARMELGDS 65
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+ +A++I +H K
Sbjct: 66 IPEPLYRTIAEIIAFAWHLK 85
>gi|91785606|ref|YP_560812.1| flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
gi|91689560|gb|ABE32760.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
Length = 119
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP ++AKG ++A+ + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPQLYQAVAELLAWLHRLE 86
>gi|313905165|ref|ZP_07838534.1| type III secretion exporter [Eubacterium cellulosolvens 6]
gi|313470068|gb|EFR65401.1| type III secretion exporter [Eubacterium cellulosolvens 6]
Length = 103
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A ALRY +N APV+VA G +A+K+ + A + +P++E+ SLA SL Q+ +
Sbjct: 10 QKAAALRYDPEKNGAPVIVASGMGYMAEKITETAMKAGVPVYEDDSLA-SLLTQLKLGKE 68
Query: 334 IPPVFYKAVAQLIYKIY 350
IP ++A+ ++ +Y
Sbjct: 69 IPEELFQAIVEI--YVY 83
>gi|224373751|ref|YP_002608123.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
gi|223589598|gb|ACM93334.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
Length = 87
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y E +AP ++AKG+ +A+K+ + A +++P+F+ +LA L V + IP
Sbjct: 4 AVALKYKAYEENAPKVLAKGKGELARKIIEKAKLYDVPLFQNETLADMLL-NVEVGEEIP 62
Query: 336 PVFYKAVAQLIYKIYHKK 353
P YKAV + +Y +
Sbjct: 63 PKMYKAVVDVFIWLYKLE 80
>gi|332305476|ref|YP_004433327.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172805|gb|AEE22059.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 110
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+AL++ + +N +AP +VAKG +A ++ +A + + I E+P L+ L + +
Sbjct: 12 AKSAVALKHNEGDNKNAPQVVAKGFGELADEIIALAKQSGVLIHEDPYLSEFL-ASLDLG 70
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI Y
Sbjct: 71 QEIPEELYHVIAELISFSYVL 91
>gi|296157427|ref|ZP_06840262.1| type III secretion exporter [Burkholderia sp. Ch1-1]
gi|295892199|gb|EFG71982.1| type III secretion exporter [Burkholderia sp. Ch1-1]
Length = 119
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP ++AKG ++A+ + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPQLYQAVAELLAWLHRLE 86
>gi|289523587|ref|ZP_06440441.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503279|gb|EFD24443.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 100
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY + + AP ++A G+ IA+K+ A + IP+ E+ L L V + IP
Sbjct: 13 AAALRYDKKLDSAPRVIASGRGWIAEKIIDEARKRGIPLVEDSLLVSVLLG-VNLGEEIP 71
Query: 336 PVFYKAVAQLIYKI 349
Y AVA+++ +
Sbjct: 72 EEAYLAVARILVFL 85
>gi|92114151|ref|YP_574079.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
DSM 3043]
gi|91797241|gb|ABE59380.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 101
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y Q + APV+VAKG +A+++ + A I + + P L +L QV +++
Sbjct: 9 KRAVALAY-QDASAAPVVVAKGYGELAERIVEKAKHEGIFVHDAPELV-ALLMQVDMDAE 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+ +A+L+ +Y +
Sbjct: 67 IPPTLYQVIAELLAWVYDLE 86
>gi|171317301|ref|ZP_02906498.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
gi|171097562|gb|EDT42399.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
Length = 106
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYSL 85
>gi|161526225|ref|YP_001581237.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
17616]
gi|189349061|ref|YP_001944689.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
17616]
gi|160343654|gb|ABX16740.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
17616]
gi|189333083|dbj|BAG42153.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
17616]
Length = 105
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG +A+ + A + + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|222100070|ref|YP_002534638.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
4359]
gi|221572460|gb|ACM23272.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
4359]
Length = 80
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
T+ A+ALRY + +AP +VAKG +A+K+ +IA + IPI E P L L + +
Sbjct: 3 TDDIRKAVALRYDPSSMNAPEVVAKGAGEVAEKIIEIAKRYGIPIEERPDLVDDLLR-LE 61
Query: 330 INSAIPPVFYKAVAQ 344
+ S IP Y +A+
Sbjct: 62 LFSEIPEEMYLVIAE 76
>gi|229824938|ref|ZP_04451007.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
49176]
gi|229790941|gb|EEP27055.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
49176]
Length = 97
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y +AP ++A G+ +A+K+ + +++IP +E+ L +SL Q+ I IP
Sbjct: 10 AVALGYDTESGEAPYVIAAGKGALAEKIISESKKNDIPQYEDEKLVKSL-SQLEIGENIP 68
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ VAQ++ +
Sbjct: 69 PELYEVVAQVLLFVDKM 85
>gi|127512324|ref|YP_001093521.1| FlhB domain-containing protein [Shewanella loihica PV-4]
gi|126637619|gb|ABO23262.1| FlhB domain protein [Shewanella loihica PV-4]
Length = 118
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A ALRY AP + AKG++L+A+++ IA E I I ++ +L+ L +++ I
Sbjct: 24 TQAAALRYDGKL--APQITAKGEDLVAEEIIAIAKEAGIYIHQDANLSNFL-QKLEIGEE 80
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 81 IPKELYLLIAELIAFVYML 99
>gi|323527687|ref|YP_004229840.1| type III secretion exporter [Burkholderia sp. CCGE1001]
gi|323384689|gb|ADX56780.1| type III secretion exporter [Burkholderia sp. CCGE1001]
Length = 122
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP ++AKG ++A+ + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAHGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+L+ ++ +
Sbjct: 66 RIPPQLYQAVAELLAWLHRLE 86
>gi|134297235|ref|YP_001120970.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
gi|134140392|gb|ABO56135.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
Length = 105
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG L+A + + A + + + P + SL QV ++
Sbjct: 5 KRAAALVYDPKGGDAAPRVVAKGYGLVADMIVERARDAGLYVHTAPEMV-SLLMQVDLDD 63
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 64 RIPPQLYQAVADLLAWLYAL 83
>gi|167628834|ref|YP_001679333.1| flagellar biosynthesis protein, putative [Heliobacterium
modesticaldum Ice1]
gi|167591574|gb|ABZ83322.1| flagellar biosynthesis protein, putative [Heliobacterium
modesticaldum Ice1]
Length = 100
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
I P+ ALRY + APV++A+G+ +A+K+ ++A E NIPI E+P L +L +
Sbjct: 14 IGGPS--VAALRYDPNSD-APVVIAQGKGHLARKIIEMAKEKNIPIQEDPLLVENLID-M 69
Query: 329 PINSAIPPVFYKAVAQLI 346
+ IPP Y VA+++
Sbjct: 70 DLGDTIPPQLYLVVAEIL 87
>gi|187925735|ref|YP_001897377.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
PsJN]
gi|187716929|gb|ACD18153.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
PsJN]
Length = 119
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 274 HYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++
Sbjct: 7 RSAAALVYDAQGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDA 65
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IPP Y+AVA+++ ++ +
Sbjct: 66 RIPPQLYQAVAEMLAWLHRLE 86
>gi|226944518|ref|YP_002799591.1| flagellar protein [Azotobacter vinelandii DJ]
gi|226719445|gb|ACO78616.1| flagellar protein [Azotobacter vinelandii DJ]
Length = 94
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
ALAL Y + + AP +VAKG +A+++ A+ +P+ P L L QV +++
Sbjct: 9 RQALALSYAEG-DAAPRVVAKGYGRLAERIVAEAHRQGVPVHAAPELV-GLLMQVDLDAQ 66
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IPP Y+ VA+L+ Y +
Sbjct: 67 IPPQLYQVVAELLVWAYGLE 86
>gi|218509883|ref|ZP_03507761.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
Length = 67
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 49/57 (85%)
Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
KGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 1 KGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 57
>gi|317122916|ref|YP_004102919.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
12885]
gi|315592896|gb|ADU52192.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
12885]
Length = 211
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS---LARSLFK 326
T P A ALRY + AP +VA G +A+ + + A E +P P LAR
Sbjct: 18 TRPPRAAAALRYDPARDGAPRVVAAGFGAMAEAILRRAREAGVPQVTSPVAPILAR---- 73
Query: 327 QVPINSAIPPVFYKAVAQLIY 347
+P IPP Y+ VA+++
Sbjct: 74 -IPPGQEIPPALYEVVARIMA 93
>gi|78067877|ref|YP_370646.1| putative flagellar protein FhlB [Burkholderia sp. 383]
gi|77968622|gb|ABB10002.1| putative flagellar protein FhlB [Burkholderia sp. 383]
Length = 105
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG +A+ + A++ + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYSL 85
>gi|254459185|ref|ZP_05072607.1| FlhB domain protein [Campylobacterales bacterium GD 1]
gi|207084078|gb|EDZ61368.1| FlhB domain protein [Campylobacterales bacterium GD 1]
Length = 83
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P
Sbjct: 4 AAALRYNIDKESAPRVVAKGQGKSAENIIKIAELHNLPIKKDEDL-MELLSKVELDKEVP 62
Query: 336 PVFYKAVAQLIYKIYH 351
YKAVA++ IY
Sbjct: 63 AALYKAVAEVFSFIYK 78
>gi|119775405|ref|YP_928145.1| FlhB domain-containing protein [Shewanella amazonensis SB2B]
gi|119767905|gb|ABM00476.1| FlhB domain protein [Shewanella amazonensis SB2B]
Length = 100
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y N AP + AKG+ L+A+++ +A E I I E+P+LA L + +N +
Sbjct: 6 KIAVALSYD--GNGAPKVTAKGEALLAEEIIALARECGIHIHEDPALANFL-TMMELNES 62
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+L+ +Y
Sbjct: 63 IPKELYVLIAELLSFVYML 81
>gi|297531383|ref|YP_003672658.1| type III secretion exporter [Geobacillus sp. C56-T3]
gi|297254635|gb|ADI28081.1| type III secretion exporter [Geobacillus sp. C56-T3]
Length = 98
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+T PT A +RY ++ +P +VA+G +A+K+ ++A +H+IPI E+P L ++L Q+
Sbjct: 14 MTGPT--AAVIRYDESSGQSPTVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70
Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
+ IPP Y +A+++ I +
Sbjct: 71 DLGDRIPPQLYAVIAEILILIQELE 95
>gi|300870471|ref|YP_003785342.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
95/1000]
gi|300688170|gb|ADK30841.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
95/1000]
Length = 86
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + ++AP++++KG+ L+AK+M +IA ++ +PI + + L + I
Sbjct: 6 ENAVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKEL-MHLEIGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y+AV+ ++ +Y K
Sbjct: 65 IPYSVYEAVSIILKYVYKLK 84
>gi|255528146|ref|ZP_05394973.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
gi|255508159|gb|EET84572.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
Length = 87
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A ALRY Q +APV+ A G +A K+ + A + N+PI + L L V + +IP
Sbjct: 7 AAALRYEQG-YEAPVVTAAGMGYVADKIIENAEKANVPIVYDKELTD-LLSSVDVGDSIP 64
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA++I +
Sbjct: 65 FELYDAVAKVIAYVM 79
>gi|94314177|ref|YP_587386.1| putative flagellar protein [Cupriavidus metallidurans CH34]
gi|93358029|gb|ABF12117.1| putative flagellar protein [Cupriavidus metallidurans CH34]
Length = 91
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + E AP +VAKG + A+ + A E + + P+L L QV ++S IP
Sbjct: 9 AVALSYEEGE-KAPRVVAKGYGVTAESIIARAQEAGVYVHNSPALVN-LLMQVDMDSQIP 66
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y AVAQL+ ++ +
Sbjct: 67 PQLYLAVAQLLAWLHQIE 84
>gi|157961216|ref|YP_001501250.1| FlhB domain-containing protein [Shewanella pealeana ATCC 700345]
gi|157846216|gb|ABV86715.1| FlhB domain protein [Shewanella pealeana ATCC 700345]
Length = 102
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
NP A+AL Y AP + AKG++ +A+++ +A + IPI ++ L L +++ +
Sbjct: 6 NPKK-AVALSYQPGT--APKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLCDFL-QRLEV 61
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 62 GDEIPSELYLLIAELIAFVYVL 83
>gi|170699624|ref|ZP_02890662.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
gi|170135440|gb|EDT03730.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
Length = 106
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|85712296|ref|ZP_01043347.1| Uncharacterized conserved protein, related to C-terminal FlhB
domain [Idiomarina baltica OS145]
gi|85693923|gb|EAQ31870.1| Uncharacterized conserved protein, related to C-terminal FlhB
domain [Idiomarina baltica OS145]
Length = 91
Score = 86.1 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y +AP ++AKG + +A+++ ++A H + + E+P L+ SL ++ +
Sbjct: 7 KQAIGLSYD--GLNAPQVIAKGFDELAEEIIEVAKAHGVMVHEDPMLSDSL-ARLNVGEE 63
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI Y
Sbjct: 64 IPRELYVLIAELIAFSYLL 82
>gi|330862334|emb|CBX72494.1| hypothetical protein YEW_GP28250 [Yersinia enterocolitica W22703]
Length = 143
Score = 86.1 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
P+S K+ A +G+ P S++ ++ + ++ LI L F + + +A +
Sbjct: 12 PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69
Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
++D + I LL + ++ + + I + L+ + P FK++S
Sbjct: 70 IDDPTAIEQLLLANLFIFFKFLLTLAPIPL-VSILATLVPGGWNFTPVKLIPDFKKLSPL 128
Query: 134 EGIKRIYSI 142
GIK+ +
Sbjct: 129 AGIKKYFQP 137
>gi|172062010|ref|YP_001809662.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
gi|171994527|gb|ACB65446.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
Length = 106
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|167949067|ref|ZP_02536141.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 59
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS 57
M+EN KTE P++K++ D+ +G P SRE + + L +I L+ +
Sbjct: 1 MAENKDGQEKTEQPTAKRMSDSRRKGQVPRSRELNTMAVTLGGVITLVMMSGHFAQA 57
>gi|167949065|ref|ZP_02536139.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 169
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 70/152 (46%)
Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ +++++ D+S ++ LT SA +++P L+ ++ + S ++ ++ ++ P
Sbjct: 5 FTISRQEIFDVSSMLVRLTESLQSAFMMLLPYFLVMVVLAVASSVVLGGLAVSSENLMPK 64
Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
++S +GIKR++S L+ +K+ K +L+G + + L L + H
Sbjct: 65 LSKLSPLKGIKRMFSAKALIEVVKAIAKFVLIGGLTVLLLWNTLENYLQLHEMDLHQGFD 124
Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
V +I++ + + +D+ +
Sbjct: 125 LISSLVGWSVILLASTLILIAAIDVPFQLWDH 156
>gi|262360425|gb|ACY57146.1| type III secretion apparatus protein [Yersinia pestis D106004]
Length = 139
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
K E P+ K++++A +G S E + ++A +IY L + + + +
Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQ 63
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
Q ++ I +V+ ++ I + + Q P+L V +
Sbjct: 64 LQQPLTLALARIGA---ECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE 120
Query: 129 RVSLREGIKRI 139
R++ + +
Sbjct: 121 RITPFKMLNNF 131
>gi|32266819|ref|NP_860851.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
51449]
gi|32262871|gb|AAP77917.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
51449]
Length = 92
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP +VAKG+N +A K+ A E ++P+F P L SL ++P++S IP
Sbjct: 6 AVALAYNAQNDSAPRVVAKGKNELALKIIAKAQEFDVPLFSNPLLVDSLL-EIPLDSHIP 64
Query: 336 PVFYKAVAQLIYKIYH 351
P Y AV ++ +
Sbjct: 65 PEMYNAVVEVFVWLLK 80
>gi|120598277|ref|YP_962851.1| FlhB domain-containing protein [Shewanella sp. W3-18-1]
gi|120558370|gb|ABM24297.1| FlhB domain protein [Shewanella sp. W3-18-1]
Length = 103
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A+AL Y + AP +VA G+ LIA+++ +A E + I ++ L+ L + + +
Sbjct: 6 NKTKQAVALSYDRK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 63 GEEIPKELYILIAELIAFVYML 84
>gi|146297151|ref|YP_001180922.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410727|gb|ABP67731.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 94
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y E AP ++AKGQ L+A+++ + A E NIPI+ + +A LF + + IP
Sbjct: 9 AVAIKYDIKEI-APKVIAKGQGLVAERILEKAKEKNIPIYHDQYIAERLF-NLELQQYIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y+ VAQ++ I
Sbjct: 67 EDLYEVVAQILVFI 80
>gi|167585157|ref|ZP_02377545.1| putative flagellar protein FhlB [Burkholderia ubonensis Bu]
Length = 105
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 268 IITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+ + A AL Y + AP ++AKG +A+ + A + + + P + SL
Sbjct: 1 MSGSSRKRAAALVYDAKGGDAAPRVIAKGYGAVAEMIVARARDAGLYVHTAPEMV-SLLM 59
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
QV ++ IPP Y+AVA L+ +Y +
Sbjct: 60 QVDLDDRIPPQLYQAVADLLAWLYALE 86
>gi|209964217|ref|YP_002297132.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
centenum SW]
gi|209957683|gb|ACI98319.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
centenum SW]
Length = 104
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+ALR+ P +VA G +A+++ ++A+ + + E+ LA + + ++S I
Sbjct: 12 VAVALRHQPGGESLPRIVASGHGAVAEQILEMAFAAGVKVREDADLA-EILSALDLDSEI 70
Query: 335 PPVFYKAVAQLIYKIYH 351
P AVA+++ +Y
Sbjct: 71 PLEAIAAVAEILAYVYR 87
>gi|34558360|ref|NP_908175.1| hypothetical protein WS2076 [Wolinella succinogenes DSM 1740]
gi|34484079|emb|CAE11075.1| hypothetical protein WS2076 [Wolinella succinogenes]
Length = 102
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A AL Y + AP L+AKG+ +IA+++ + A E IP+F+ L SL + P++
Sbjct: 16 PLPKAAALAYDSQKQRAPKLLAKGKGIIAERIIERARELEIPLFQNELLVNSLLES-PLD 74
Query: 332 SAIPPVFYKAVAQLIYKI 349
IPP YKAV ++ +
Sbjct: 75 QEIPPALYKAVVEVFVWL 92
>gi|24374711|ref|NP_718754.1| FlhB domain-containing protein [Shewanella oneidensis MR-1]
gi|24349369|gb|AAN56198.1|AE015758_2 FlhB domain protein [Shewanella oneidensis MR-1]
Length = 102
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + +
Sbjct: 7 TQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 63
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 64 EIPRELYLLIAELIAFVYML 83
>gi|325526461|gb|EGD04041.1| putative flagellar protein FhlB [Burkholderia sp. TJI49]
Length = 105
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG +A+ + A++ + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|217077929|ref|YP_002335647.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
gi|217037784|gb|ACJ76306.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
Length = 75
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
+AL+Y + P ++AKG+ +AKK+ +IA + +PI + L L+K + + IP
Sbjct: 1 MALKYDPKVDFVPFVIAKGKEEVAKKILEIAKKSGVPIVKSSELVDELYK-LKVLEEIPK 59
Query: 337 VFYKAVAQLIYKI 349
Y AVA++I +
Sbjct: 60 KLYLAVAEIIVFL 72
>gi|146293645|ref|YP_001184069.1| FlhB domain-containing protein [Shewanella putrefaciens CN-32]
gi|145565335|gb|ABP76270.1| FlhB domain protein [Shewanella putrefaciens CN-32]
gi|319427044|gb|ADV55118.1| type III secretion exporter [Shewanella putrefaciens 200]
Length = 103
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A+AL Y AP +VA G+ LIA+++ +A E + I ++ L+ L + + +
Sbjct: 6 NKTKQAVALSYDGK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62
Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 63 GEEIPKELYLLIAELIAFVYML 84
>gi|217972643|ref|YP_002357394.1| FlhB domain-containing protein [Shewanella baltica OS223]
gi|217497778|gb|ACK45971.1| FlhB domain-containing protein [Shewanella baltica OS223]
Length = 102
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y +AP +VA G+ LIA+++ +A + + I ++P L+ L + + +
Sbjct: 8 KQAVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 IPKELYVLIAELIAFVYML 83
>gi|88812111|ref|ZP_01127363.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Nitrococcus mobilis Nb-231]
gi|88790615|gb|EAR21730.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Nitrococcus mobilis Nb-231]
Length = 113
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y T + AP + A+G +A+++ ++A H+IP++ L + L Q+ ++
Sbjct: 18 RLAVALEY--TGHGAPRVTAQGHGALAEEIIRLAQAHDIPLYPNRDLVQVL-AQIELDQE 74
Query: 334 IPPVFYKAVAQLIYKIY 350
IP + Y AVA+LI Y
Sbjct: 75 IPELLYHAVAELIAFAY 91
>gi|315185654|gb|EFU19422.1| type III secretion exporter [Spirochaeta thermophila DSM 6578]
Length = 104
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y AP ++AKG+ A + ++A EH IPI E +AR + + IP
Sbjct: 16 AVAMKYTPEL-PAPFVIAKGRGKTADLILELAREHRIPIVEHR-IAREGYDLFLPGTYIP 73
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ VA + +Y +
Sbjct: 74 EDLYEVVATIFAFVYSIE 91
>gi|312622764|ref|YP_004024377.1| type iii secretion exporter [Caldicellulosiruptor kronotskyensis
2002]
gi|312203231|gb|ADQ46558.1| type III secretion exporter [Caldicellulosiruptor kronotskyensis
2002]
Length = 92
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y + AP ++AKG+ +A+++ + A + +IP++E+ +A LF + + IP
Sbjct: 9 AVAIKYDLE-DIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVAEKLF-NLELQEYIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y+ +AQ++ I
Sbjct: 67 EDLYEVIAQILVFI 80
>gi|222528969|ref|YP_002572851.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455816|gb|ACM60078.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
DSM 6725]
Length = 92
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y + AP ++AKG+ +A+++ + A + +IP++E+ + LF + + IP
Sbjct: 9 AVAIKYDLE-DIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVVEKLF-NLELQEYIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y+ VAQ++ I
Sbjct: 67 EDLYEVVAQILVFI 80
>gi|149194925|ref|ZP_01872018.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
TB-2]
gi|149134846|gb|EDM23329.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
TB-2]
Length = 92
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAI 334
A ALRY E+ AP ++AKG+ IA+K+ + A E +IP+F+ L SL + I+ I
Sbjct: 9 AAALRYKAYEDLAPKVIAKGKGEIAEKIIQKAKEFDIPLFQNEELVDSL---LKIDNDTI 65
Query: 335 PPVFYKAVAQLIYKIYHKK 353
PP YKAV ++ +Y +
Sbjct: 66 PPELYKAVVEVFIWLYKME 84
>gi|157376171|ref|YP_001474771.1| FlhB domain-containing protein [Shewanella sediminis HAW-EB3]
gi|157318545|gb|ABV37643.1| FlhB domain protein [Shewanella sediminis HAW-EB3]
Length = 111
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL + P + AKG L+A+++ +A E + I + P L+ L +++ +
Sbjct: 17 RQAVALGFDGQHT--PTVTAKGTGLVAEEIIALAEEAGVHIHKNPHLSDFL-QRLELGEE 73
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 74 IPKELYFLIAELIAFVYML 92
>gi|302343755|ref|YP_003808284.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
DSM 2075]
gi|301640368|gb|ADK85690.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
DSM 2075]
Length = 106
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 276 ALALRYIQT---ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+ALRY A + AKG+ +A+++ ++A +H +PI ++P L + ++ I+
Sbjct: 16 AVALRYGPEGHETTGA--VAAKGRLRLAERIIELARQHGVPIKQDPDLV-EILARLDIDE 72
Query: 333 AIPPVFYKAVAQLIYKIYH 351
IPP Y A+++ ++
Sbjct: 73 EIPPELYVVAAEILAFVHR 91
>gi|312878031|ref|ZP_07737969.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|311795183|gb|EFR11574.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
lactoaceticus 6A]
Length = 94
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
E+ AP +VAKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ VAQ
Sbjct: 17 EDIAPKIVAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75
Query: 345 LIYKI 349
++ I
Sbjct: 76 ILVFI 80
>gi|107023990|ref|YP_622317.1| flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
gi|116691077|ref|YP_836700.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
gi|170734411|ref|YP_001766358.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
gi|254246929|ref|ZP_04940250.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
gi|105894179|gb|ABF77344.1| putative flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
gi|116649166|gb|ABK09807.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
gi|124871705|gb|EAY63421.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
gi|169817653|gb|ACA92236.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
Length = 105
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG ++A+ + A++ + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|227871678|ref|ZP_03990091.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
F0268]
gi|227842477|gb|EEJ52694.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
F0268]
Length = 111
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y +N AP++VA G +A+K+ + A + +P++E+ SLA SL Q+ + + IP
Sbjct: 12 AAALKYDNEKNGAPMIVAAGMGHMAEKITETAMKSGVPVYEDDSLA-SLLTQMKLGAEIP 70
Query: 336 PVFYKAVAQLIYKIY 350
++A+ ++ IY
Sbjct: 71 EELFQAIVEI--YIY 83
>gi|206558931|ref|YP_002229691.1| putative export system protein [Burkholderia cenocepacia J2315]
gi|198034968|emb|CAR50840.1| putative export system protein [Burkholderia cenocepacia J2315]
Length = 105
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A AL Y + AP +VAKG ++A+ + A++ + + P + SL QV ++
Sbjct: 7 KRAAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IPP Y+AVA L+ +Y
Sbjct: 66 RIPPQLYQAVADLLAWLYAL 85
>gi|312127964|ref|YP_003992838.1| type iii secretion exporter [Caldicellulosiruptor hydrothermalis
108]
gi|311777983|gb|ADQ07469.1| type III secretion exporter [Caldicellulosiruptor hydrothermalis
108]
Length = 92
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
E+ AP +VAKG+ +A+K+ + A + +IP++E+ ++A LF + + IP Y+ VAQ
Sbjct: 17 EDIAPKVVAKGKGYVAEKIVEKAKQEDIPVYEDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75
Query: 345 LIYKI 349
++ I
Sbjct: 76 ILVFI 80
>gi|153956205|ref|YP_001396970.1| hypothetical protein CKL_3609 [Clostridium kluyveri DSM 555]
gi|219856530|ref|YP_002473652.1| hypothetical protein CKR_3187 [Clostridium kluyveri NBRC 12016]
gi|146349063|gb|EDK35599.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219570254|dbj|BAH08238.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 88
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y +AP++ A G IA + A E N+PI + L L V + +IP
Sbjct: 7 AVALKYEP-TYEAPMVTAAGIGQIADNILNKARESNVPIVYDRELTN-LLSNVDVGDSIP 64
Query: 336 PVFYKAVAQLIYKI 349
Y VA++I +
Sbjct: 65 VELYDVVAKVIAYV 78
>gi|170726000|ref|YP_001760026.1| FlhB domain-containing protein [Shewanella woodyi ATCC 51908]
gi|169811347|gb|ACA85931.1| FlhB domain protein [Shewanella woodyi ATCC 51908]
Length = 104
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL + N+AP + AKG LIA+++ +A E I I + L+ L + + +
Sbjct: 9 TQQAVALGFD--GNNAPKVTAKGSGLIAEEIISVAKEAGIHIHKNADLSNFL-QNLELGD 65
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y +A++I Y
Sbjct: 66 EIPKELYLLIAEIIAFAYML 85
>gi|126175101|ref|YP_001051250.1| FlhB domain-containing protein [Shewanella baltica OS155]
gi|153001425|ref|YP_001367106.1| FlhB domain-containing protein [Shewanella baltica OS185]
gi|160876150|ref|YP_001555466.1| FlhB domain-containing protein [Shewanella baltica OS195]
gi|304409932|ref|ZP_07391551.1| type III secretion exporter [Shewanella baltica OS183]
gi|307302355|ref|ZP_07582113.1| type III secretion exporter [Shewanella baltica BA175]
gi|125998306|gb|ABN62381.1| FlhB domain protein [Shewanella baltica OS155]
gi|151366043|gb|ABS09043.1| FlhB domain protein [Shewanella baltica OS185]
gi|160861672|gb|ABX50206.1| FlhB domain protein [Shewanella baltica OS195]
gi|304351341|gb|EFM15740.1| type III secretion exporter [Shewanella baltica OS183]
gi|306914393|gb|EFN44814.1| type III secretion exporter [Shewanella baltica BA175]
gi|315268346|gb|ADT95199.1| type III secretion exporter [Shewanella baltica OS678]
Length = 102
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y +AP +VA G+ LIA+++ +A + + I ++P L+ L + + +
Sbjct: 8 KQAVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 IPKELYLLIAELIAFVYML 83
>gi|307546936|ref|YP_003899415.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
gi|307218960|emb|CBV44230.1| K04061 flagellar biosynthesis protein [Halomonas elongata DSM 2581]
Length = 90
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y E AP +VA+G +A+++ + A +H I + + P L L Q+ ++ A
Sbjct: 8 RRAVGLAYGDDET-APKVVARGYGELAERIVEQAKQHGIHVHDAPELV-GLLMQLDLDEA 65
Query: 334 IPPVFYKAVAQLIYKI 349
IPP Y+ VA+L+ +
Sbjct: 66 IPPELYRIVAELLVWL 81
>gi|148378183|ref|YP_001252724.1| hypothetical protein CBO0180 [Clostridium botulinum A str. ATCC
3502]
gi|148287667|emb|CAL81732.1| putative protein exporter [Clostridium botulinum A str. ATCC 3502]
Length = 89
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
++I N A AL+Y ++ PV+ A G +A K+ + A E +PI + LA L
Sbjct: 1 MVILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELAN-LLT 58
Query: 327 QVPINSAIPPVFYKAVAQLIYKIY 350
+ I +IP Y AVA++I +
Sbjct: 59 NIDIGDSIPYELYDAVAKVIAYVM 82
>gi|119476289|ref|ZP_01616640.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
gamma proteobacterium HTCC2143]
gi|119450153|gb|EAW31388.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
gamma proteobacterium HTCC2143]
Length = 113
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A +L+Y + AP++ A G +A+++ IA +H IP+FE +L L + +
Sbjct: 9 PEKKAASLQYD--GSGAPIVSAAGSGEVAEQIIAIARQHEIPLFENEALL-ELLVNIGVG 65
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +AQ+I Y
Sbjct: 66 EEIPESLYLCIAQVIAFAYKI 86
>gi|113969652|ref|YP_733445.1| FlhB domain-containing protein [Shewanella sp. MR-4]
gi|113884336|gb|ABI38388.1| FlhB domain protein [Shewanella sp. MR-4]
Length = 103
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + +
Sbjct: 8 TQQAVALGYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 64
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 EIPKELYLLIAELIAFVYML 84
>gi|114046882|ref|YP_737432.1| FlhB domain-containing protein [Shewanella sp. MR-7]
gi|113888324|gb|ABI42375.1| FlhB domain protein [Shewanella sp. MR-7]
Length = 103
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + +
Sbjct: 8 TQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 64
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 EIPKELYLLIAELIAFVYML 84
>gi|326791379|ref|YP_004309200.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
gi|326542143|gb|ADZ84002.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
Length = 94
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +AP +VA G +A+ + + A +H++P++E+ LA ++ ++ + IP
Sbjct: 9 AVALSYQED-MNAPTIVASGSGKVAENILEEAKKHHVPVYEDKKLA-TILAELQVGEQIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y+ VA+++ +
Sbjct: 67 TELYELVAKVLVFV 80
>gi|150021423|ref|YP_001306777.1| flagellar protein FhlB-like protein [Thermosipho melanesiensis
BI429]
gi|149793944|gb|ABR31392.1| cytoplasmic domain of flagellar protein FhlB-like protein
[Thermosipho melanesiensis BI429]
Length = 89
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
++ T+ A+AL+Y + P +VAKG+ +A+K+ ++A + +PI + LFK
Sbjct: 1 MVYTSREKLAVALKYNPKTDFVPFVVAKGKEEVAEKIMELAKKSGVPIVRSSKIVGELFK 60
Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
+ + IP Y +A++I I +K
Sbjct: 61 -LNVLEEIPEKMYVVIAEIIAFIQSQK 86
>gi|239828347|ref|YP_002950971.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
gi|239808640|gb|ACS25705.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
Length = 98
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
I PT A +RY + +P +VA+G +A+K+ ++A +HN+ I E+P L ++L +
Sbjct: 14 INGPT--AAVIRYDEETGKSPTVVAQGTGYVAQKIIELAKQHNVHIQEDPLLVQNLL-NL 70
Query: 329 PINSAIPPVFYKAVA 343
+ +IPP Y +A
Sbjct: 71 DLGDSIPPQLYAVIA 85
>gi|187777232|ref|ZP_02993705.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
15579]
gi|187774160|gb|EDU37962.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
15579]
Length = 89
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+II N A AL+Y ++ PV+ A G +A K+ + A E +PI + LA L
Sbjct: 1 MIILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELAN-LLT 58
Query: 327 QVPINSAIPPVFYKAVAQLIYKIY 350
+ I +IP Y AVA++I +
Sbjct: 59 NIDIGDSIPYELYDAVAKVIAYVM 82
>gi|312134792|ref|YP_004002130.1| type iii secretion exporter [Caldicellulosiruptor owensensis OL]
gi|311774843|gb|ADQ04330.1| type III secretion exporter [Caldicellulosiruptor owensensis OL]
Length = 92
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
++ AP ++AKG+ +A+K+ + A + IP+FE +A LF + + IP Y+ VAQ
Sbjct: 17 KDIAPKVIAKGKGYVAEKIIEKAKQEEIPVFEHKDVAEKLF-SLELQEYIPEDLYEVVAQ 75
Query: 345 LIYKI 349
++ I
Sbjct: 76 ILVFI 80
>gi|291562062|emb|CBL40878.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [butyrate-producing bacterium SS3/4]
Length = 103
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y ++ APV+VA G +A+K+ + A + +P++E+ SLA +L ++ + +A
Sbjct: 10 QKAVALQYSPEKDTAPVIVASGMGYMAEKITEAARKSGVPVYEDDSLA-TLLSRLQLGAA 68
Query: 334 IPPVFYKAVAQLIYKIY 350
+P Y+A+ ++ IY
Sbjct: 69 VPEELYQAIIEI--YIY 83
>gi|312793166|ref|YP_004026089.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180306|gb|ADQ40476.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 94
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
E+ AP ++AKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ VAQ
Sbjct: 17 EDIAPKIIAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75
Query: 345 LIYKI 349
++ I
Sbjct: 76 ILVFI 80
>gi|302872175|ref|YP_003840811.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
gi|302575034|gb|ADL42825.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
Length = 92
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
++ AP +VAKG+ +A+K+ + A + NIP++++ ++A LF + + IP Y+ VAQ
Sbjct: 17 KDIAPKVVAKGKGYVAEKIIEKAKQENIPVYKDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75
Query: 345 LIYKI 349
++ I
Sbjct: 76 ILVFI 80
>gi|117919817|ref|YP_869009.1| FlhB domain-containing protein [Shewanella sp. ANA-3]
gi|117612149|gb|ABK47603.1| FlhB domain protein [Shewanella sp. ANA-3]
Length = 103
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y +AP +VA G+ L+A ++ +A + I ++P L+ L + + +
Sbjct: 8 TQQAVALSYDGK--NAPKVVASGEGLVADEIIALAKASGVFIHQDPHLSNFL-RLLELGE 64
Query: 333 AIPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 EIPKELYLLIAELIAFVYML 84
>gi|167770250|ref|ZP_02442303.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
17241]
gi|167667572|gb|EDS11702.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
17241]
Length = 112
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+ + + A+AL+Y E+ AP+++A G +A+++ +A + IP+F + S A SL
Sbjct: 1 MSRSKKNKAVALKYNAEEDVAPIVIASGYGELAQRIIDVAEKQGIPVFRDDS-AVSLMCM 59
Query: 328 VPINSAIPPVFYKAVAQL 345
+ + S IPP Y+ VA +
Sbjct: 60 LEVGSNIPPELYQVVAAI 77
>gi|119468354|ref|ZP_01611445.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7]
gi|119447862|gb|EAW29127.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7]
Length = 102
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
+ A+ L Y P + KG +A+++ A + I I E+P LA++L + +
Sbjct: 7 SKSAIGLLYEAGST--PSVSVKGFGELAEEIISAAKQKGIMIHEDPDLAKTL-SHLELGE 63
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IP Y +A+LI Y +
Sbjct: 64 EIPKELYFVIAELIAFSYVLR 84
>gi|150388629|ref|YP_001318678.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
gi|149948491|gb|ABR47019.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
Length = 96
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A+AL+Y + AP + A GQ ++A+++ + A E+++ I+ + L + L + + +
Sbjct: 7 GKQAIALQYDVERDHAPRITAAGQGMMAERILERAEENDVAIYHDERLVKELI-EFKVGT 65
Query: 333 AIPPVFYKAVAQLIYKI 349
IP Y+ VAQ++ I
Sbjct: 66 EIPTELYEVVAQVLVFI 82
>gi|333008534|gb|EGK28003.1| surface presentation of antigens protein spaS domain protein
[Shigella flexneri K-218]
gi|333017441|gb|EGK36757.1| surface presentation of antigens protein spaS domain protein
[Shigella flexneri K-227]
gi|333020371|gb|EGK39635.1| surface presentation of antigens protein spaS domain protein
[Shigella flexneri K-304]
Length = 108
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 41/103 (39%)
Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
+ + + + +++ NPTH A+ + + AP + N A +RK A
Sbjct: 1 MHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 60
Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
E IP + LAR L+K S + V +LI +
Sbjct: 61 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 103
>gi|288958046|ref|YP_003448387.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Azospirillum sp. B510]
gi|288910354|dbj|BAI71843.1| flagellar protein FhlB cytoplasmic domain-containing protein
[Azospirillum sp. B510]
Length = 119
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
A+AL+Y P +VA G+ +A+++ ++A+ + + + E+ L + + ++S I
Sbjct: 24 VAVALKYQLGTETLPRIVATGKGTVAEQILELAFANGVKVREDADLV-EILSAIEVDSDI 82
Query: 335 PPVFYKAVAQLIYKIYH 351
P AVA+++ +Y
Sbjct: 83 PVEAIAAVAEILAHVYR 99
>gi|320536637|ref|ZP_08036655.1| FlhB domain protein [Treponema phagedenis F0421]
gi|320146513|gb|EFW38111.1| FlhB domain protein [Treponema phagedenis F0421]
Length = 104
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
+ AL Y AP++VAKG+ IA+K+ +IA +H++PI ++ LA + + I + IP
Sbjct: 9 SAALSYTLGS-SAPIIVAKGKGQIAEKILEIADKHSVPIIQDTILA-EILSEQQIGACIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y+AVA + +
Sbjct: 67 DETYQAVAAIFAFL 80
>gi|315585981|gb|ADU40362.1| FlhB domain protein [Helicobacter pylori 35A]
gi|332674386|gb|AEE71203.1| FlhB domain protein [Helicobacter pylori 83]
Length = 90
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTTKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIVLFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|218672785|ref|ZP_03522454.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
Length = 124
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M++ D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + +
Sbjct: 1 MAD-DDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGAHER 59
Query: 61 DLHVLL 66
+ L
Sbjct: 60 NAARYL 65
>gi|217031730|ref|ZP_03437234.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128]
gi|298737133|ref|YP_003729663.1| flagellar biosynthesis protein [Helicobacter pylori B8]
gi|216946577|gb|EEC25177.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128]
gi|298356327|emb|CBI67199.1| flagellar biosynthesis protein [Helicobacter pylori B8]
Length = 90
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A+AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ IP Y++V Q+ +
Sbjct: 61 DCTIPEELYESVVQVFLWL 79
>gi|158321501|ref|YP_001514008.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
gi|158141700|gb|ABW20012.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
Length = 98
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y + APV+ A G ++A K+ + E+ + I+E+ L + L Q + + IP
Sbjct: 10 AVAIKYDVENDRAPVITASGMGVVADKIIEKGMENEVAIYEDERLVKELI-QFKVGTEIP 68
Query: 336 PVFYKAVAQLIYKI 349
P Y+ VAQ++ I
Sbjct: 69 PELYEIVAQVLVFI 82
>gi|172057901|ref|YP_001814361.1| hypothetical protein Exig_1892 [Exiguobacterium sibiricum 255-15]
gi|171990422|gb|ACB61344.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
Length = 86
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP +VAKG +A+++ + A +HNIPI E+ +L +L V ++ IP
Sbjct: 4 AIALSYE-EQMQAPKVVAKGSERVAERILEEALQHNIPIREDATLI-TLLNTVQVSEQIP 61
Query: 336 PVFYKAVAQLIYKIYHK 352
Y +A+L +Y
Sbjct: 62 NELYGVIAELFAFLYQL 78
>gi|308183730|ref|YP_003927857.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
PeCan4]
gi|308065915|gb|ADO07807.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
PeCan4]
Length = 90
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNIGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|332140356|ref|YP_004426094.1| uncharacterized C-terminal FlhB domain-containing protein
[Alteromonas macleodii str. 'Deep ecotype']
gi|327550378|gb|AEA97096.1| uncharacterized C-terminal FlhB domain-containing protein
[Alteromonas macleodii str. 'Deep ecotype']
Length = 105
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 273 THYALALRYIQT-ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+ L+Y + + P +V+KG +A+ + +A E I I E+P L+ L + +
Sbjct: 7 AKRAIGLKYEGGDKKNTPKVVSKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVG 65
Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
IP Y +A+L+ Y
Sbjct: 66 QDIPESLYFVIAELLAYSYVL 86
>gi|109948156|ref|YP_665384.1| putative flagellar biosynthesis protein [Helicobacter acinonychis
str. Sheeba]
gi|109715377|emb|CAK00385.1| putative flagellar biosynthesis protein [Helicobacter acinonychis
str. Sheeba]
Length = 90
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+S IP Y++V Q+ +
Sbjct: 61 DSVIPEELYESVVQVFLWL 79
>gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
6192]
gi|306532470|gb|ADN02004.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
6192]
Length = 104
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y AP ++AKG+ A + +A EH IP+ E +AR + + +P
Sbjct: 16 AVAMKYTPEL-PAPFVIAKGRGKTADLILDLAREHRIPVVEHR-IAREGYDLFLPGTYVP 73
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ VA + +Y +
Sbjct: 74 EDLYEVVATIFAFVYSIE 91
>gi|308062858|gb|ADO04746.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
Cuz20]
Length = 90
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ IP Y++V Q+ +
Sbjct: 61 DCTIPEELYESVVQVFLWL 79
>gi|302873574|ref|YP_003842207.1| type III secretion exporter [Clostridium cellulovorans 743B]
gi|307688245|ref|ZP_07630691.1| type III secretion exporter [Clostridium cellulovorans 743B]
gi|302576431|gb|ADL50443.1| type III secretion exporter [Clostridium cellulovorans 743B]
Length = 88
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y Q P++ A+G +A+K+ + A E+++PI +A L V + +IP
Sbjct: 7 AAALKYEQGYES-PIVAAQGVGYVAEKIVEKADENDVPIVYNKEMAD-LLTNVDVGDSIP 64
Query: 336 PVFYKAVAQLIYKIY 350
Y AVA+++ I
Sbjct: 65 EELYAAVAEIMAHIM 79
>gi|210135753|ref|YP_002302192.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
P12]
gi|210133721|gb|ACJ08712.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
P12]
gi|317011812|gb|ADU85559.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
SouthAfrica7]
Length = 90
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ IP Y++V Q+ +
Sbjct: 61 DCTIPEELYESVVQVFLWL 79
>gi|217033813|ref|ZP_03439238.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10]
gi|216943711|gb|EEC23154.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10]
gi|317178297|dbj|BAJ56086.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
F16]
gi|317179776|dbj|BAJ57564.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
F30]
Length = 90
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A+AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|207093353|ref|ZP_03241140.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
HPKX_438_AG0C1]
gi|207108746|ref|ZP_03242908.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
HPKX_438_CA4C1]
Length = 90
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E+NI +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYNIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|188528367|ref|YP_001911054.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
Shi470]
gi|188144607|gb|ACD49024.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
Shi470]
gi|308064357|gb|ADO06244.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
Sat464]
Length = 90
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|313903321|ref|ZP_07836713.1| type III secretion exporter [Thermaerobacter subterraneus DSM
13965]
gi|313466409|gb|EFR61931.1| type III secretion exporter [Thermaerobacter subterraneus DSM
13965]
Length = 174
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
P A ALR+ + AP +VA G +A+ + + A E +P P LA L +VP
Sbjct: 17 PQRAAAALRFDPGTDPAPRVVAAGFGTMAEAILRRAREAGVPEVTSP-LAPVL-ARVPPG 74
Query: 332 SAIPPVFYKAVAQLIY 347
AIP ++ VA+++
Sbjct: 75 QAIPAALFEVVARIMA 90
>gi|330903429|gb|EGH34001.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 159
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 60/161 (37%), Gaps = 3/161 (1%)
Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
DA +G S++ ++A L + + + L + + +
Sbjct: 1 RDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKGIDRSFAASVEL 60
Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
I + + + + M+ + S +Q + +K +++ K++
Sbjct: 61 IA---SEGLTVLLSFTLCSVGIAMLMRLISSWMQIGFLFAPKALKIDPNKINPFSHAKQM 117
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+S NL+N + S +K I +G + + + T++ +++
Sbjct: 118 FSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSD 158
>gi|88800022|ref|ZP_01115593.1| FlhB domain protein [Reinekea sp. MED297]
gi|88777300|gb|EAR08504.1| FlhB domain protein [Reinekea sp. MED297]
Length = 112
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A L+Y + P++ A G+N A++M ++A +P++E+ LA ++ Q+ +
Sbjct: 6 TTRAATLKYKGRKT--PIISALGKNEQAEEMIQLAKACGVPVYEDEDLA-AILSQLDVGQ 62
Query: 333 AIPPVFYKAVAQLIYKIY 350
AIP Y+ VA ++ +
Sbjct: 63 AIPAELYEWVASVLAFAF 80
>gi|15646182|ref|NP_208366.1| ABC transporter, putative [Helicobacter pylori 26695]
gi|308185362|ref|YP_003929495.1| ABC transporter, putative [Helicobacter pylori SJM180]
gi|2314760|gb|AAD08615.1| ABC transporter, putative [Helicobacter pylori 26695]
gi|308061282|gb|ADO03178.1| ABC transporter, putative [Helicobacter pylori SJM180]
Length = 90
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|329898296|ref|ZP_08272379.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088]
gi|328920861|gb|EGG28304.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088]
Length = 92
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
+ A A+ Y AP ++AK + + + A + IP+ E P LA +L + V I+
Sbjct: 10 SDRAYAVEY--GSKAAPTVMAKASGYDVEILIEAARDLQIPVIENPQLA-ALLEGVEIDE 66
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IP Y +VA ++ ++ +
Sbjct: 67 EIPEELYHSVAIVLSWVFWIR 87
>gi|291529025|emb|CBK94611.1| Flagellar biosynthesis pathway, component FlhB [Eubacterium
rectale M104/1]
Length = 93
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
+++ KTE + KK++DA EG S+E + ++ + L F S ++
Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84
Query: 62 LHV 64
Sbjct: 85 FST 87
>gi|167623406|ref|YP_001673700.1| FlhB domain-containing protein [Shewanella halifaxensis HAW-EB4]
gi|167353428|gb|ABZ76041.1| FlhB domain protein [Shewanella halifaxensis HAW-EB4]
Length = 102
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y AP + AKG++ +A+++ +A + I I ++ L L +++ I
Sbjct: 8 RQAVALSYQSG--AAPKVSAKGEDKLAEEIIALAQQAGIHIHQDEYLCDFL-QRLEIGDE 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y +A+LI +Y
Sbjct: 65 IPSELYLLIAELIAFVYVL 83
>gi|149182544|ref|ZP_01861016.1| flagellar biosynthesis [Bacillus sp. SG-1]
gi|148849736|gb|EDL63914.1| flagellar biosynthesis [Bacillus sp. SG-1]
Length = 98
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY ++E AP ++A+G +A K+ ++A EHNI + E+ SL +SL + + +P
Sbjct: 19 AAVIRYEESEGKAPKVIAQGTGHLATKIMELAKEHNITMQEDSSLVQSLLD-IDLGENVP 77
Query: 336 PVFYKAVAQLIYKI 349
P Y +A+++ I
Sbjct: 78 PQLYSVIAEILLFI 91
>gi|261838862|gb|ACX98628.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
51]
gi|297380750|gb|ADI35637.1| FlhB domain protein [Helicobacter pylori v225d]
Length = 90
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|15612548|ref|NP_224201.1| putative flagellar biosynthesis protein [Helicobacter pylori J99]
gi|108563949|ref|YP_628265.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
HPAG1]
gi|208435454|ref|YP_002267120.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
G27]
gi|254780106|ref|YP_003058213.1| hypothetical protein HELPY_1578 [Helicobacter pylori B38]
gi|2440007|gb|AAC45665.1| AbcB [Helicobacter pylori]
gi|4156117|gb|AAD07068.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
gi|107837722|gb|ABF85591.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
HPAG1]
gi|208433383|gb|ACI28254.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
G27]
gi|254002019|emb|CAX30278.1| Conserved hypothetical protein; putative flagellar biosynthetic
protein flhB [Helicobacter pylori B38]
gi|261840268|gb|ACY00034.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
52]
gi|317013390|gb|ADU83998.1| hypothetical protein HPLT_08135 [Helicobacter pylori Lithuania75]
gi|317181277|dbj|BAJ59063.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
F32]
gi|317182800|dbj|BAJ60584.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
F57]
Length = 90
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|291277367|ref|YP_003517139.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
mustelae 12198]
gi|290964561|emb|CBG40414.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
mustelae 12198]
Length = 89
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL Y +N AP +VA G+ IA+++ + A E+++P+F +L SL + I+S IP
Sbjct: 4 AAALAYAPYQNSAPKVVASGKGTIAEQIIQKAREYDVPLFSNTALVDSLIG-IEIDSQIP 62
Query: 336 PVFYKAVAQLIYKI 349
P Y+ V ++ +
Sbjct: 63 PELYQGVVEVFIWL 76
>gi|153933699|ref|YP_001382583.1| hypothetical protein CLB_0219 [Clostridium botulinum A str. ATCC
19397]
gi|153935408|ref|YP_001386136.1| hypothetical protein CLC_0233 [Clostridium botulinum A str. Hall]
gi|153938549|ref|YP_001389542.1| hypothetical protein CLI_0242 [Clostridium botulinum F str.
Langeland]
gi|168177512|ref|ZP_02612176.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|170757316|ref|YP_001779806.1| hypothetical protein CLD_0601 [Clostridium botulinum B1 str. Okra]
gi|170761762|ref|YP_001785507.1| hypothetical protein CLK_3357 [Clostridium botulinum A3 str. Loch
Maree]
gi|226947401|ref|YP_002802492.1| hypothetical protein CLM_0228 [Clostridium botulinum A2 str. Kyoto]
gi|152929743|gb|ABS35243.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gi|152931322|gb|ABS36821.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
gi|152934445|gb|ABS39943.1| conserved hypothetical protein [Clostridium botulinum F str.
Langeland]
gi|169122528|gb|ACA46364.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
gi|169408751|gb|ACA57162.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
gi|182670835|gb|EDT82809.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|226844528|gb|ACO87194.1| conserved hypothetical protein [Clostridium botulinum A2 str.
Kyoto]
gi|295317640|gb|ADF98017.1| conserved hypothetical protein [Clostridium botulinum F str.
230613]
gi|322804447|emb|CBZ01997.1| flagellar biosynthesis related protein [Clostridium botulinum
H04402 065]
Length = 86
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A AL+Y ++ PV+ A G +A K+ + A E +PI + LA L + I
Sbjct: 2 NERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELAN-LLTNIDI 59
Query: 331 NSAIPPVFYKAVAQLIYKIY 350
+IP Y AVA++I +
Sbjct: 60 GDSIPYELYDAVAKVIAYVM 79
>gi|167751329|ref|ZP_02423456.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
gi|167655575|gb|EDR99704.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
gi|291530383|emb|CBK95968.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Eubacterium siraeum 70/3]
gi|291557246|emb|CBL34363.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
protein FhlB [Eubacterium siraeum V10Sc8a]
Length = 94
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y N APV+VA G +AKK+ IA E+ +P++ + S A +L + IP
Sbjct: 11 AAALKYNPDLNYAPVVVASGLGELAKKIINIADENGVPVYRDDSTA-ALLVMLNSGETIP 69
Query: 336 PVFYKAVAQLIYKI 349
Y+ +A + ++
Sbjct: 70 VELYRIIAAIYAEV 83
>gi|300853474|ref|YP_003778458.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM
13528]
gi|300433589|gb|ADK13356.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM
13528]
Length = 88
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
+AP++ A G IA + A E +PI + LA L V I +P Y AVA++I
Sbjct: 17 EAPIVTAAGIGQIADNILNKAKESGVPIVYDKELAN-LLSNVDIGDNVPFELYDAVAKVI 75
Query: 347 YKI 349
+
Sbjct: 76 AYV 78
>gi|167034893|ref|YP_001670124.1| hypothetical protein PputGB1_3898 [Pseudomonas putida GB-1]
gi|166861381|gb|ABY99788.1| conserved hypothetical protein [Pseudomonas putida GB-1]
Length = 112
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T A+AL Y + AP L AKG + +A+ + +A EH +PI+E L R L ++ +
Sbjct: 6 TRQAIALNYDGQQ--APTLSAKGDDALAEAILALAREHEVPIYENAELVR-LLARLELGE 62
Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
IP Y +A++I + +
Sbjct: 63 QIPEALYLTIAEIIAFAWQLR 83
>gi|317010266|gb|ADU80846.1| hypothetical protein HPIN_08350 [Helicobacter pylori India7]
Length = 90
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V ++ AIP
Sbjct: 7 AAALAYNMGQDHAPKVIASGVGEVAKRIIQKAREYDIALFSNPMLVDSLLK-VELDCAIP 65
Query: 336 PVFYKAVAQLIYKI 349
Y++V Q+ +
Sbjct: 66 EELYESVVQVFLWL 79
>gi|261420589|ref|YP_003254271.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
gi|319768259|ref|YP_004133760.1| type III secretion exporter [Geobacillus sp. Y412MC52]
gi|261377046|gb|ACX79789.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
gi|317113125|gb|ADU95617.1| type III secretion exporter [Geobacillus sp. Y412MC52]
Length = 98
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+T PT A +RY ++ +P++VA+G +A+K+ ++A +H+IPI E+P L ++L Q+
Sbjct: 14 MTGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70
Query: 329 PINSAIPPVFYKAVA 343
+ IPP Y +A
Sbjct: 71 DLGDRIPPQLYAVIA 85
>gi|56421679|ref|YP_148997.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
gi|56381521|dbj|BAD77429.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
Length = 98
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY ++ +P++VA+G +A+K+ ++A +H++PI E+P L ++L Q+ + IP
Sbjct: 19 AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHVPIQEDPLLVQNLL-QLDLGDRIP 77
Query: 336 PVFYKAVA 343
P Y +A
Sbjct: 78 PQLYAVIA 85
>gi|556364|gb|AAA50308.1| flhB [Proteus mirabilis]
Length = 74
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
IP+ E P LAR+L++ I AIP Y AVA+++ +Y +
Sbjct: 1 IPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 42
>gi|289578627|ref|YP_003477254.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
Ab9]
gi|289528340|gb|ADD02692.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
Ab9]
Length = 93
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y ++ AP +VAKGQ IA K+ + A + +PI+++ + L+ + I IP
Sbjct: 9 AVALKYDV-QDIAPKVVAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66
Query: 336 PVFYKAVAQLIYKI 349
YK VA+++ I
Sbjct: 67 EDLYKIVAEILIFI 80
>gi|196249409|ref|ZP_03148107.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
G11MC16]
gi|196211166|gb|EDY05927.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
G11MC16]
Length = 98
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY +T AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ + IP
Sbjct: 19 AAVIRYDETSGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QLDLGDRIP 77
Query: 336 PVFYKAVA 343
P Y +A
Sbjct: 78 PQLYAVIA 85
>gi|187918556|ref|YP_001884119.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
gi|119861404|gb|AAX17199.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
Length = 86
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
AL ++Y T+ AP ++AK + A +++++A + IPI E+ L+ SLF +
Sbjct: 5 KLALLIKYD-TKFPAPFILAKARGEKALRIKELAKQEGIPIVEDKYLSESLF-LINEGDF 62
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
I ++K VAQ++ +Y K
Sbjct: 63 IDFKYFKVVAQILSVVYKLK 82
>gi|91792711|ref|YP_562362.1| FlhB domain-containing protein [Shewanella denitrificans OS217]
gi|91714713|gb|ABE54639.1| FlhB domain protein [Shewanella denitrificans OS217]
Length = 99
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL + AP + A G +L+A+++ +A + + I ++P+L+ L + + +
Sbjct: 5 KQAVALSFDGK--SAPKVTASGTDLLAEEIIALAEKAGVHIHQDPNLSNFL-QMLELGEE 61
Query: 334 IPPVFYKAVAQLIYKIYHK 352
+P Y +A+LI IY
Sbjct: 62 VPKELYLLIAELIAFIYML 80
>gi|160939648|ref|ZP_02086996.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
BAA-613]
gi|158437439|gb|EDP15203.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
BAA-613]
Length = 130
Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+ A+ALRY E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S
Sbjct: 7 NKAVALRYNVDEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDS-AASLLCMLDVGSN 65
Query: 334 IPPVFYKAVAQL 345
IP Y+ VA +
Sbjct: 66 IPVELYEVVAAI 77
>gi|297544850|ref|YP_003677152.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842625|gb|ADH61141.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 93
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL+Y ++ AP ++AKGQ IA K+ + A + +PI+++ + L+ + I IP
Sbjct: 9 AVALKYDV-QDIAPKVIAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66
Query: 336 PVFYKAVAQLIYKI 349
Y VA+++ I
Sbjct: 67 EDLYNIVAEILIFI 80
>gi|309703218|emb|CBJ02553.1| type III secretion system protein [Escherichia coli ETEC H10407]
Length = 130
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI +
Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR ++ + ++ + +++ + +
Sbjct: 61 KKLARKIYATHRRYDYVS---FENINEILRLLLWLE 93
>gi|261419407|ref|YP_003253089.1| hypothetical protein GYMC61_1991 [Geobacillus sp. Y412MC61]
gi|319766222|ref|YP_004131723.1| type III secretion exporter [Geobacillus sp. Y412MC52]
gi|261375864|gb|ACX78607.1| conserved hypothetical protein [Geobacillus sp. Y412MC61]
gi|317111088|gb|ADU93580.1| type III secretion exporter [Geobacillus sp. Y412MC52]
Length = 95
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP++ AKG +A+ + A EH +PI ++P+L L +V IN IP
Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAAREHGVPIRQDPTLV-ELLGKVEINETIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
Y VA+L +Y
Sbjct: 67 EELYALVAELFAFLYQL 83
>gi|6822153|emb|CAB71025.1| putative ABC transporter [Helicobacter pylori]
Length = 80
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEMAKRIIQEAEEYDIALFSNPMLVDSLLK-VEL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|212640409|ref|YP_002316929.1| hypothetical protein Aflv_2591 [Anoxybacillus flavithermus WK1]
gi|212561889|gb|ACJ34944.1| Uncharacterized protein containing cytoplasmic domain of flagellar
protein FhlB [Anoxybacillus flavithermus WK1]
Length = 95
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY Q + AP +VA G+ +A+K+ ++A ++ +PI ++ +L + L + + IP
Sbjct: 17 AAVIRYEQG-DKAPTVVAHGRGYVAEKIIELAKQNGVPIEQDAALVQHLLD-LDLGDTIP 74
Query: 336 PVFYKAVAQLIYKIYHKK 353
P Y +A+++ I +
Sbjct: 75 PQLYAVIAEILILIEKME 92
>gi|256024635|ref|ZP_05438500.1| surface presentation of antigens protein SpaS [Escherichia sp.
4_1_40B]
Length = 130
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI +
Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR ++ + ++ + +++ + +
Sbjct: 61 KKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 93
>gi|289606861|emb|CBI60977.1| unnamed protein product [Sordaria macrospora]
Length = 87
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
++KTE+P+ K+++ A +G+ S+E +LA +L F + + + +
Sbjct: 2 SEDKTESPTQKRLDKAREDGDILKSKELGTALVVLAGCGWLAMFGPTLVAACKAVMTASF 61
Query: 67 ASATQRKLEDISHIVFLLTHLSLSAS 92
+ +ED L+ A
Sbjct: 62 R-FGRADVEDFQPWRPLVEAGWKLAM 86
>gi|138896706|ref|YP_001127159.1| flagellar biosynthesis, FlhS-like protein [Geobacillus
thermodenitrificans NG80-2]
gi|134268219|gb|ABO68414.1| Flagellar biosynthesis, FlhS-related protein [Geobacillus
thermodenitrificans NG80-2]
Length = 98
Score = 79.5 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY + AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ + IP
Sbjct: 19 AAVIRYNEASGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QLDLGDCIP 77
Query: 336 PVFYKAVA 343
P Y +A
Sbjct: 78 PQLYAVIA 85
>gi|317128463|ref|YP_004094745.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
gi|315473411|gb|ADU30014.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
Length = 99
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
I PT A +RY + + P +VA+G+ +A+K+ +A E+ IP+ E+ L SL +
Sbjct: 15 INGPT--AAVIRYDEASGEEPKVVAQGKGHVAQKILALAKENGIPMEEDTHLLESLLD-M 71
Query: 329 PINSAIPPVFYKAVAQLIYKI 349
+ IPP Y +A+++ I
Sbjct: 72 DLGENIPPQLYSVMAEILLFI 92
>gi|119953478|ref|YP_945687.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
gi|119862249|gb|AAX18017.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
Length = 86
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
AL ++Y T+ AP ++AK + +++++A IPI E+ L+ SLF V
Sbjct: 5 KLALLIKYD-TKFPAPFILAKARGEKVLRIKELAKREGIPIVEDKYLSESLF-LVNEGDF 62
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
I ++K VA ++ +Y K
Sbjct: 63 IDSKYFKVVAHILSVVYKLK 82
>gi|168182211|ref|ZP_02616875.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|237793498|ref|YP_002861050.1| hypothetical protein CLJ_B0225 [Clostridium botulinum Ba4 str. 657]
gi|182674642|gb|EDT86603.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|229261705|gb|ACQ52738.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
Length = 86
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N A AL+Y ++ PV+ G +A K+ + A E +PI + LA L + I
Sbjct: 2 NERKKAAALKYEESYTS-PVVTVAGMGYVADKILEKASEEKVPIVYDKELAN-LLTNIDI 59
Query: 331 NSAIPPVFYKAVAQLIYKIY 350
+IP Y AVA++I +
Sbjct: 60 GDSIPYELYDAVAKVIAYVM 79
>gi|251772415|gb|EES52982.1| probable flagellar biosynthesis protein [Leptospirillum
ferrodiazotrophum]
Length = 90
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
++ALRY+ ++AP+++ GQ IA+ + +A IP+ + P L++ L + VP
Sbjct: 2 RLSVALRYLPGVDEAPLVLVSGQGEIARGIVLLAQSLKIPVVKAPDLSQQLLR-VPPGHP 60
Query: 334 IPPVFYKAVAQLIYKIY 350
+P Y+AVA ++ ++
Sbjct: 61 VPEELYEAVAVILAALF 77
>gi|307638262|gb|ADN80712.1| putative ABC transporter [Helicobacter pylori 908]
gi|317015012|gb|ADU82448.1| hypothetical protein HPGAM_08420 [Helicobacter pylori Gambia94/24]
gi|325996854|gb|ADZ52259.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
2018]
gi|325998446|gb|ADZ50654.1| putative flagellar biosynthesis protein [Helicobacter pylori 2017]
Length = 90
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V +
Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VGL 60
Query: 331 NSAIPPVFYKAVAQLIYKI 349
+ AIP Y++V Q+ +
Sbjct: 61 DCAIPEELYESVVQVFLWL 79
>gi|257457069|ref|ZP_05622247.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
35580]
gi|257445543|gb|EEV20608.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
35580]
Length = 88
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
++AL Y E P++ A G +IA+K+R+IA + +IP+ + P LA L + I S IP
Sbjct: 8 SVALSYTFGE-SVPLIAASGHGVIAQKIREIADKCHIPLIKNPLLAEVL-VEAEIGSCIP 65
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+AVA L + K
Sbjct: 66 EETYQAVAALFAFLQKK 82
>gi|168334054|ref|ZP_02692270.1| hypothetical protein Epulo_03924 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 84
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +AP + AKG+ +A+ + A ++ IP++E+ +LA L +V I S IP
Sbjct: 4 AVALSY---KAEAPEVTAKGKGKVAENIIATAEKNEIPVYEDKNLAN-LLTEVEIGSQIP 59
Query: 336 PVFYKAVAQLIYKI 349
Y+ VA+++ +
Sbjct: 60 EEVYELVAKILIMV 73
>gi|266621940|ref|ZP_06114875.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
13479]
gi|288866374|gb|EFC98672.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
13479]
Length = 127
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+ A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S
Sbjct: 7 NKAVALKYNVEEDASPVVIASGYGTVAEHIIDIAEKKGIPVFKDDS-AASLLCMLEVGSN 65
Query: 334 IPPVFYKAVAQL 345
IP Y+ VA +
Sbjct: 66 IPVELYEVVAAI 77
>gi|311030145|ref|ZP_07708235.1| hypothetical protein Bm3-1_06301 [Bacillus sp. m3-13]
Length = 98
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y Q + APV+ AKG +IA+ + + A +H IP+ E+ + + ++ +N +IP
Sbjct: 11 AVAIKYDQAKTVAPVVKAKGAGIIAENIIQEAKKHQIPLQEDGA-LLEVLMELELNESIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
Y+ VA+++ +Y+
Sbjct: 70 EELYEVVAEVLAYVYNL 86
>gi|332533097|ref|ZP_08408966.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037379|gb|EGI73833.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 102
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y P + KG +A ++ A I I E+ +LA++L + +
Sbjct: 8 KSAIGLLYEAGNT--PTVSVKGFGELADEIIAAAKLKGIMIHEDAALAKTL-SHLELGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A+LI Y +
Sbjct: 65 IPKELYYVIAELIAFSYVLR 84
>gi|13811425|gb|AAK40113.1|AF354753_1 FlhB [Yersinia enterocolitica]
Length = 52
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP 53
M+E D+ +K+E P++ K+E A +G P SRE + + A L L
Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGES 52
>gi|116328316|ref|YP_798036.1| FhlB-related protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331042|ref|YP_800760.1| FhlB-related protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121060|gb|ABJ79103.1| FhlB-related protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124731|gb|ABJ76002.1| FhlB-related protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 90
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
++AL++I +++APV+ A L+ +RKIA ++++P+ E+ LA SLF ++P+ S I
Sbjct: 2 ISVALKFIPQKDNAPVITASASGLLGDVIRKIANKNSVPVVEDSVLAESLF-ELPVGSEI 60
Query: 335 PPVFYKAVAQLIYKIYHK 352
P Y+AV + I
Sbjct: 61 PENLYRAVGAIFSMILEL 78
>gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
Length = 320
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
D+KTE + KK DA +G S+E +L ++LA I ++ + S L V
Sbjct: 262 SDDKTEEATPKKKSDARKKGQIAKSKEIALALTLLASTIVIVALGGYVGNGLKSTLIVF 320
>gi|320102430|ref|YP_004178021.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644]
gi|319749712|gb|ADV61472.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644]
Length = 310
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 12/259 (4%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF----SPGIYSVTSDL 62
+ +T+AP+ ++ +A G P + + + + A L+ L + S I T
Sbjct: 2 SEERTQAPTPRQRAEARRNGLVPFAPNLTAAAGLAAGLVGLAAWGNAAASGWIGLATRSW 61
Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
L+ + I+H +T L L+ + +L ++ ++ Q + +
Sbjct: 62 SDLMLNPPSHAPLSINHATTSVTSLVLATVTPTLNIILAPVVAMTLIHVTQTLGNITPAR 121
Query: 123 VKPSFKRVSLREGI----KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+ P +R+ + ++ + ++ L +
Sbjct: 122 LIPDPRRLWRPHHWEELGMGTALGRGVGEALRFLGFLGATIGVVGWGLMAVDHVSETMTT 181
Query: 179 ANPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ A + + + +A L +L+ W + +L + +E +DE +
Sbjct: 182 FPLPNALPSRFAQAVQLTWRWSLSLTAGLAILGLLEFAWRWRDVERRLMRTPEENRDERR 241
Query: 235 QSYGNPIIKNRQKSIARSR 253
S NP + R++ +AR R
Sbjct: 242 SSESNPAWRARRRELARQR 260
>gi|90579953|ref|ZP_01235761.1| Uncharacterized conserved protein [Vibrio angustum S14]
gi|90438838|gb|EAS64021.1| Uncharacterized conserved protein [Vibrio angustum S14]
Length = 102
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T +A+AL+Y ++ P + AKG +A+ + + +H I ++P LA+ L +
Sbjct: 8 TSHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAQYL-NSFDVGD 64
Query: 333 AIPPVFYKAVAQLIYK 348
IP Y +A+LI
Sbjct: 65 EIPQELYLIIAELIAF 80
>gi|294140230|ref|YP_003556208.1| FlhB domain-containing protein [Shewanella violacea DSS12]
gi|293326699|dbj|BAJ01430.1| FlhB domain protein [Shewanella violacea DSS12]
Length = 114
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + AP++ A G+ +A ++ +A E + I ++ L+ L +++ I IP
Sbjct: 22 AVALSYDGQQ--APMITATGKGAVADEIIALAKEAGVLIHKDAHLSDFL-QRLEIGDEIP 78
Query: 336 PVFYKAVAQLIYKIYHK 352
Y +A+LI Y
Sbjct: 79 KELYLLIAELIAFAYTL 95
>gi|239628974|ref|ZP_04672005.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519120|gb|EEQ58986.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 127
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+ A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + +
Sbjct: 7 NKAVALKYNADEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDS-AASLLCMLDVGCN 65
Query: 334 IPPVFYKAVAQL 345
IP Y+ VA +
Sbjct: 66 IPVELYEVVAGI 77
>gi|296283248|ref|ZP_06861246.1| flagellar biosynthetic protein FlhB [Citromicrobium bathyomarinum
JL354]
Length = 66
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
IA +++IPI E+P LAR+L ++ IP Y AVA++I +
Sbjct: 14 DIAKDNDIPIIEKPPLARALHASAKLDQPIPAEHYLAVAEIISYVMKL 61
>gi|15893927|ref|NP_347276.1| flagellar biosynthesis related protein [Clostridium acetobutylicum
ATCC 824]
gi|15023512|gb|AAK78616.1|AE007579_6 Flagellar biosynthesis related protein [Clostridium acetobutylicum
ATCC 824]
gi|325508054|gb|ADZ19690.1| Flagellar biosynthesis related protein [Clostridium acetobutylicum
EA 2018]
Length = 90
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL+Y +AP++ A G IA + K A E+ +P+ L L V + S+IP
Sbjct: 8 AAALKYDLG-YEAPIVTAVGVGKIADNIVKKASENEVPVVYNKELTDLLL-NVDVGSSIP 65
Query: 336 PVFYKAVAQLIYKIY 350
Y VA++I I
Sbjct: 66 YEIYDVVAEVIAYIM 80
>gi|15639896|ref|NP_219346.1| hypothetical protein TP0911 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026134|ref|YP_001933906.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
SS14]
gi|3323223|gb|AAC65862.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018709|gb|ACD71327.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
SS14]
gi|291060268|gb|ADD73003.1| FlhB domain protein [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 83
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
++AL Y + AP++VA G IA+K+ +IA + +I + ++ LAR L + I + IP
Sbjct: 8 SVALSYATG-DKAPIIVASGTGAIAEKIVEIAKKFDIALVQDELLARVL-SEHRIGACIP 65
Query: 336 PVFYKAVAQLIYKIY 350
P Y+ V+ + +Y
Sbjct: 66 PETYQVVSAIFAFLY 80
>gi|77359769|ref|YP_339344.1| hypothetical protein PSHAa0820 [Pseudoalteromonas haloplanktis
TAC125]
gi|76874680|emb|CAI85901.1| conserved protein of unknown function; similar to FlhB domain
protein [Pseudoalteromonas haloplanktis TAC125]
Length = 102
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y + P++ KG +A ++ A + I I ++ +LA++L + +
Sbjct: 8 KSAIGLLYAAGNS--PMVSTKGFGKLADEIIAAAEKKGIMIHQDEALAKTL-SHLELGEE 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP Y +A+LI Y +
Sbjct: 65 IPKELYYVIAELIAFSYVLR 84
>gi|45657435|ref|YP_001521.1| flagellar biosynthetic transmembrane protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|45600674|gb|AAS70158.1| flagellar biosynthetic transmembrane protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 87
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
++AL++I +++APV+ A + +R IA ++++P + P LA SL ++PI S I
Sbjct: 2 ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVPTVKNPILAESL-SELPIGSEI 60
Query: 335 PPVFYKAVAQLIYKIY 350
P Y+AV + I
Sbjct: 61 PENLYRAVGAIFSMIM 76
>gi|313620099|gb|EFR91604.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378]
Length = 80
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASATQRKLEDISHIVFLL 84
LL + + + +L+
Sbjct: 57 AFVALLKQPPKLASMESYSLFYLM 80
>gi|255028553|ref|ZP_05300504.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28]
Length = 78
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+ DNKTE + ++I+ A NEGN S+E + S+L L FF I +
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQ 56
Query: 61 DLHVLLASA 69
LL
Sbjct: 57 AFVALLKQP 65
>gi|114563973|ref|YP_751487.1| FlhB domain-containing protein [Shewanella frigidimarina NCIMB 400]
gi|114335266|gb|ABI72648.1| FlhB domain protein [Shewanella frigidimarina NCIMB 400]
Length = 104
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL + AP + A G++L+A++M IA E I I ++P L+ L + + +
Sbjct: 10 QQAVALSFDGK--SAPKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFL-QLLELGDE 66
Query: 334 IPPVFYKAVAQLIYKIYHK 352
+P Y +A+LI +Y
Sbjct: 67 VPKELYLLIAELIAFVYML 85
>gi|56460216|ref|YP_155497.1| FlhB domain-containing protein [Idiomarina loihiensis L2TR]
gi|56179226|gb|AAV81948.1| Uncharacterized conserved protein, related to C-terminal FlhB
domain [Idiomarina loihiensis L2TR]
Length = 93
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+ L Y +AP ++A+G + +A+++ +A EH + + E+P L+ SL ++ +
Sbjct: 7 KQAIGLSYD--GFNAPKVIARGFDELAEEIIAVAKEHGVLVHEDPLLSDSL-AKLNVGDE 63
Query: 334 IPPVFY 339
IP Y
Sbjct: 64 IPRELY 69
>gi|315127291|ref|YP_004069294.1| hypothetical protein PSM_A2228 [Pseudoalteromonas sp. SM9913]
gi|315015805|gb|ADT69143.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 102
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
++ A+ L Y + P++ AKG +A ++ +A E I I ++ +LA +L ++ +
Sbjct: 7 SNSAIGLLYEAGHS--PIVSAKGFGELADEIIALAKEKGILIHQDEALANTL-SKLDLAE 63
Query: 333 AIPPVFYKAVAQLIYKIY 350
IP Y +A+LI Y
Sbjct: 64 EIPKELYFVIAELIAFSY 81
>gi|15614038|ref|NP_242341.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
C-125]
gi|10174092|dbj|BAB05194.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
C-125]
Length = 99
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
A ++Y +T DAP LVA G+ IA+++ +A +NI + E+P L +L + +
Sbjct: 17 GRTAAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLLD-MDLGD 75
Query: 333 AIPPVFYKAVAQLI 346
IPP Y +A+++
Sbjct: 76 NIPPQLYSVMAEIL 89
>gi|42527803|ref|NP_972901.1| FlhB domain-containing protein [Treponema denticola ATCC 35405]
gi|41818631|gb|AAS12820.1| FlhB domain protein [Treponema denticola ATCC 35405]
gi|325474963|gb|EGC78149.1| FlhB domain-containing protein [Treponema denticola F0402]
Length = 87
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y E AP++ A G+ L AK++++ A + I I E+ +LA L I S IP
Sbjct: 12 AVALSY-ALEAKAPIITASGRGLTAKRIKEAAERNKIKIVEDETLANILIHH-EIGSCIP 69
Query: 336 PVFYKAVAQLIYKIYHK 352
YKAVA + + K
Sbjct: 70 EYTYKAVAAIFAFLLKK 86
>gi|89073439|ref|ZP_01159962.1| Uncharacterized conserved protein, C-terminal FlhB domain
protein-like [Photobacterium sp. SKA34]
gi|89050703|gb|EAR56184.1| Uncharacterized conserved protein, C-terminal FlhB domain
protein-like [Photobacterium sp. SKA34]
Length = 102
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
T +A+AL+Y ++ P + AKG +A+ + + +H I ++P LA+ L +
Sbjct: 8 TTHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAKYL-NSFDVGD 64
Query: 333 AIPPVFYKAVAQLIYK 348
IP Y +A+LI
Sbjct: 65 DIPQELYLIIAELIAF 80
>gi|310659608|ref|YP_003937329.1| hypothetical protein CLOST_2307 [Clostridium sticklandii DSM 519]
gi|308826386|emb|CBH22424.1| conserved protein of unknown function [Clostridium sticklandii]
Length = 95
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+++ Y E AP++ AKGQ +A+K+ + A E + + + L SL V I IP
Sbjct: 11 AVSVTYE-DELRAPIVSAKGQGYVAEKIIEKAQESGVATYFDEELLESLMA-VAIGDEIP 68
Query: 336 PVFYKAVAQLIYKI 349
Y+ VA+++ I
Sbjct: 69 VELYEIVAKVLAFI 82
>gi|209920313|ref|YP_002294397.1| putative type III secretion protein [Escherichia coli SE11]
gi|209913572|dbj|BAG78646.1| putative type III secretion protein [Escherichia coli SE11]
Length = 130
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI +
Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR + + ++ + +++ + +
Sbjct: 61 KKLARKNYATHRRYDYVS---FENIDEILRLLLWLE 93
>gi|256019343|ref|ZP_05433208.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
Length = 130
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI +
Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60
Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
LAR + + ++ + +++ + +
Sbjct: 61 KKLARKNYATHRRYDYVS---FENIDEILRLLLWLE 93
>gi|322379284|ref|ZP_08053670.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
gi|322379844|ref|ZP_08054132.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
gi|321147722|gb|EFX42334.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
gi|321148321|gb|EFX42835.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
Length = 86
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++ AP +VA G IA+ + + A +IP+F SL SL +P++ AIP
Sbjct: 4 AVALAYNIEQDHAPKVVASGVGSIAEAIMQKAKAFDIPLFCNESLVESLLH-LPVDHAIP 62
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y++V ++ +
Sbjct: 63 PELYQSVVEVFIWLQDL 79
>gi|288555870|ref|YP_003427805.1| FlhB protein [Bacillus pseudofirmus OF4]
gi|288547030|gb|ADC50913.1| FlhB protein [Bacillus pseudofirmus OF4]
Length = 99
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY + + AP +VA+G+ +A ++ ++A++++I + E+ +L +L + + IP
Sbjct: 20 AAVIRYDKEDGSAPKVVAQGRGQLANQIIQLAHKNDIHMQEDATLVSNLLD-MDLGDNIP 78
Query: 336 PVFYKAVAQLI 346
P Y +A+++
Sbjct: 79 PQLYSVMAEIL 89
>gi|330445392|ref|ZP_08309044.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489583|dbj|GAA03541.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 99
Score = 73.4 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y + P + AKG +A+ + + + I ++P LA+ L +
Sbjct: 6 TSAIALKYDGEKT--PYITAKGHQQLAEHIIEQVKQQGGLIHQDPVLAQYL-NSFDVGDE 62
Query: 334 IPPVFYKAVAQLIYK 348
IP Y +A+LI
Sbjct: 63 IPQELYLIIAELIAF 77
>gi|229918614|ref|YP_002887260.1| FlhB domain protein [Exiguobacterium sp. AT1b]
gi|229470043|gb|ACQ71815.1| FlhB domain protein [Exiguobacterium sp. AT1b]
Length = 86
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y Q DAP +VAKG ++A++M +IA + +P+ E+P+ SL + I IP
Sbjct: 7 AMALSYEQ-SMDAPHVVAKGTGIVAERMLEIALANGVPVHEDPA-LLSLLSALNIEEQIP 64
Query: 336 PVFYKAVAQLIYKIYHKK 353
Y+ +A+L +Y +
Sbjct: 65 EDVYQVIAELFVFLYQME 82
>gi|291519579|emb|CBK74800.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio
fibrisolvens 16/4]
Length = 145
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 38/105 (36%)
Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
+ KTE P+SKK+ DA EG S+E ++L L F S
Sbjct: 18 DGEGGEKTEQPTSKKLSDARKEGKVAKSKEIVNGIALLGFFFALRVFLSFAGVRFEEIFA 77
Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
+ A + S + H +S L +LL ++ +
Sbjct: 78 WVYAIIPDVISMNGSGLTIQTLHGIISTLLLKTLIILLPFLWLVF 122
>gi|94500688|ref|ZP_01307218.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Oceanobacter sp. RED65]
gi|94427243|gb|EAT12223.1| uncharacterized flagellar protein FhlB cytoplasmic domain
[Oceanobacter sp. RED65]
Length = 93
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y P++ A+ + A E IPI+E P+L L +
Sbjct: 4 QQAVALFYDGDTT--PIVSQNQLGEAAQFLIDAALEAGIPIYENPALIEQL-AHLSEGDE 60
Query: 334 IPPVFYKAVAQLIYKIY 350
IP Y+ +A+++ +
Sbjct: 61 IPVELYRLIAEILAFAF 77
>gi|157162317|ref|YP_001459635.1| hypothetical protein EcHS_A3014 [Escherichia coli HS]
gi|300906604|ref|ZP_07124295.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1]
gi|300950610|ref|ZP_07164512.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300958191|ref|ZP_07170345.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1]
gi|301303004|ref|ZP_07209131.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1]
gi|301643803|ref|ZP_07243840.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|307139547|ref|ZP_07498903.1| surface presentation of antigens protein SpaS [Escherichia coli
H736]
gi|331643547|ref|ZP_08344678.1| surface presentation of antigens protein SpaS [Escherichia coli
H736]
gi|71388155|gb|AAZ31289.1| EpaS2 [Escherichia coli]
gi|157067997|gb|ABV07252.1| conserved hypothetical protein [Escherichia coli HS]
gi|300315143|gb|EFJ64927.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1]
gi|300401643|gb|EFJ85181.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1]
gi|300450090|gb|EFK13710.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300841668|gb|EFK69428.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1]
gi|301077836|gb|EFK92642.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|315256729|gb|EFU36697.1| type III secretion system protein BsaZ [Escherichia coli MS 85-1]
gi|323935781|gb|EGB32084.1| type III secretion protein SctU [Escherichia coli E1520]
gi|331037018|gb|EGI09242.1| surface presentation of antigens protein SpaS [Escherichia coli
H736]
Length = 120
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++
Sbjct: 1 MIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ + +++ + +
Sbjct: 61 HRRYDYVS---FENIDEILRLLLWLE 83
>gi|297584528|ref|YP_003700308.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
[Bacillus selenitireducens MLS10]
gi|297142985|gb|ADH99742.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
[Bacillus selenitireducens MLS10]
Length = 99
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
+ PT A +RY +T D P +VA G+ IA+++ ++A E++I + E+ L +L +
Sbjct: 15 VNGPT--AAVIRYDETNGDDPKIVASGKGYIAERILELAKENHIHMEEDSLLLENLID-M 71
Query: 329 PINSAIPPVFYKAVAQLI 346
+ IPP Y +A+++
Sbjct: 72 DLGENIPPQLYAVIAEIL 89
>gi|237749753|ref|ZP_04580233.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229374618|gb|EEO25009.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 91
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A AL Y + ++ AP +VA GQ IA+ + A E+ +P+F L SL K + +NS +P
Sbjct: 5 AAALAYEEYKDHAPRIVASGQGKIAEAIIAKAQEYQVPLFCNAELVDSLIK-MEVNSNVP 63
Query: 336 PVFYKAVAQLIYKI 349
Y+AV + +
Sbjct: 64 EALYQAVVDVFIWL 77
>gi|24215084|ref|NP_712565.1| FlhB-like protein [Leptospira interrogans serovar Lai str. 56601]
gi|24196142|gb|AAN49583.1| FlhB-related protein [Leptospira interrogans serovar Lai str.
56601]
Length = 87
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
++AL++I +++APV+ A + +R IA ++++ + P LA SL ++PI S I
Sbjct: 2 ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVLTVKNPILAESL-SELPIGSEI 60
Query: 335 PPVFYKAVAQLIYKIY 350
P Y+AV + I
Sbjct: 61 PENLYRAVGAIFSMIM 76
>gi|328947869|ref|YP_004365206.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
gi|328448193|gb|AEB13909.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
Length = 87
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+A++L+Y DAP + AK ++AKKM +IA E+NIP+ E +A ++ I
Sbjct: 7 FFAVSLKY-PENADAPFISAKESGILAKKMVEIAQENNIPVVEN-DIAANILSMRQIGEC 64
Query: 334 IPPVFYKAVAQLIYKIYHKK 353
IP ++A+A++ I + +
Sbjct: 65 IPESTWEAIAEIFTFIKNME 84
>gi|160901650|ref|YP_001567231.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
gi|160359294|gb|ABX30908.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
Length = 87
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ALRY Q + AP +VAKG + IA+++ +IA E NIPI + + + ++ IP
Sbjct: 7 AVALRYKQGTDQAPKVVAKGIDSIARRIIEIAEEENIPIVKSEKAVEEFYG-LDLDEEIP 65
Query: 336 PVFYKAVAQLIYKIYHK 352
P Y+ A++I ++
Sbjct: 66 PELYELAAEIIAFVFKL 82
>gi|309793917|ref|ZP_07688342.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308122324|gb|EFO59586.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 120
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++
Sbjct: 1 MIANPTHIAIGIYFKPHLSTIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ + +++ + +
Sbjct: 61 HRRYDYVS---FENIDEILRLLLWLE 83
>gi|183221054|ref|YP_001839050.1| hypothetical protein LEPBI_I1667 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911148|ref|YP_001962703.1| FhlB-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167775824|gb|ABZ94125.1| FhlB-related protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779476|gb|ABZ97774.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 86
Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
+AL Y E+ AP LVAK + L+A + +IA + + I ++ + ++L +P
Sbjct: 3 QKMVALAYNPNEDPAPKLVAKAEGLLASHLVRIAKDAGVFIVQDEMMVKTL-AHLPNGKE 61
Query: 334 IPPVFYKAVAQLIY 347
IP Y+ VA +
Sbjct: 62 IPRELYEVVASVFR 75
>gi|88858080|ref|ZP_01132722.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2]
gi|88819697|gb|EAR29510.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2]
Length = 98
Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+ L Y +AP + KG ++A+++ +A E NI I ++ L+ + KQ+ + IP
Sbjct: 6 AIGLLYDGK--NAPSVSVKGFGVLAEEILALAKEKNILIHQDEGLSDVI-KQLELGQEIP 62
Query: 336 PVFYKAVAQLIYKIYHK 352
Y +A+LI Y
Sbjct: 63 RELYLIIAELIAFSYVL 79
>gi|212634395|ref|YP_002310920.1| FlhB domain-containing protein [Shewanella piezotolerans WP3]
gi|212555879|gb|ACJ28333.1| FlhB domain protein [Shewanella piezotolerans WP3]
Length = 102
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+A++Y Q AP + AK ++ +A++M +A E I I ++ L L +++ + AIP
Sbjct: 10 AVAVKYDQG--AAPSISAKAEDELAQEMIALAEEAGIFIHKDEHLCEFL-QKMDVGEAIP 66
Query: 336 PVFYKAVAQLIYKIYHK 352
Y +A+LI Y
Sbjct: 67 KELYLLIAELIAFAYVL 83
>gi|317009220|gb|ADU79800.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
Length = 61
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA LI + F G ++
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFLYGGWMALAR 56
Query: 61 DLHVL 65
+ +
Sbjct: 57 CIAMY 61
>gi|167949063|ref|ZP_02536137.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 67
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
PI E P LAR+++ +N +IP Y AVA+L+ ++ K
Sbjct: 2 PIIESPMLARAIYFSTELNESIPAGLYLAVAKLLAYVFQLK 42
>gi|188595909|pdb|2VT1|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The
Specificity Switch For The Shigella Flexneri Type Iii
Secretion System
Length = 93
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH A+ + + AP + N A +RK A E IP + LAR L+K
Sbjct: 1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKY 60
Query: 332 SAIPPVFYKAVAQLIYKIYH 351
S + V +LI +
Sbjct: 61 SFVDFEHLDEVLRLIVWLEQ 80
>gi|307310524|ref|ZP_07590172.1| type III secretion exporter [Escherichia coli W]
gi|306909419|gb|EFN39914.1| type III secretion exporter [Escherichia coli W]
gi|323377252|gb|ADX49520.1| type III secretion exporter [Escherichia coli KO11]
Length = 120
Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++
Sbjct: 1 MIFNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKIYAT 60
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ + +++ + +
Sbjct: 61 HRRYDYVS---FENIDEILRLLLWLE 83
>gi|330882956|gb|EGH17105.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 46
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL 47
MSE + + K++ S KK+ DA +G S++ IL C + +
Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCI 45
>gi|317012580|gb|ADU83188.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
Lithuania75]
Length = 61
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E + KTE PS+KKI+ A EGN P S E +LA L+ + F G ++
Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFLYGGWMALAR 56
>gi|213162232|ref|ZP_03347942.1| secretion system apparatus protein SsaU [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 83
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 30/78 (38%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KK+ D EG S E + ++A +Y FF I + + L
Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62
Query: 69 ATQRKLEDISHIVFLLTH 86
+ ++ + L
Sbjct: 63 VNKPFSYALTQLSHALIE 80
>gi|293449181|ref|ZP_06663602.1| type III secretion protein SctU [Escherichia coli B088]
gi|300815713|ref|ZP_07095937.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|300820656|ref|ZP_07100807.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669594|ref|ZP_08370440.1| surface presentation of antigens protein SpaS [Escherichia coli
TA271]
gi|331678843|ref|ZP_08379517.1| surface presentation of antigens protein SpaS [Escherichia coli
H591]
gi|291322271|gb|EFE61700.1| type III secretion protein SctU [Escherichia coli B088]
gi|300526920|gb|EFK47989.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|300531642|gb|EFK52704.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|323946509|gb|EGB42533.1| type III secretion protein SctU [Escherichia coli H120]
gi|324119898|gb|EGC13777.1| type III secretion protein SctU [Escherichia coli E1167]
gi|331063262|gb|EGI35175.1| surface presentation of antigens protein SpaS [Escherichia coli
TA271]
gi|331073673|gb|EGI44994.1| surface presentation of antigens protein SpaS [Escherichia coli
H591]
Length = 120
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I+NPTH A+ + + + P++ + N +A +RK A E IPI + LAR +
Sbjct: 1 MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ + +++ + +
Sbjct: 61 HRRYDYVS---FENIDEILRLLLWLE 83
>gi|14422431|dbj|BAB60838.1| epaS2 [Escherichia coli]
Length = 120
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
+I+NPTH A+ + + + P++ + N +A +RK A E IPI + LAR +
Sbjct: 1 MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60
Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
+ ++ + +++ + +
Sbjct: 61 HRRYDYVN---FENIDEILRLLLWLE 83
>gi|258626190|ref|ZP_05721038.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258581545|gb|EEW06446.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 110
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
+ A +G S+E + S ++ + L++F + + + L S + ++ DI
Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFTAMQRLF-SLDREEIFDIGK 60
Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
+ ++ ++ ++ L+ + + L P+
Sbjct: 61 LFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGLTFPLKRRCPN 107
>gi|306820966|ref|ZP_07454586.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551080|gb|EFM39051.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 91
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y + +APV+ AKG +A M + A I + + L SL + I IP
Sbjct: 14 AVALEYD-EQYNAPVVSAKGSGYVAMNMLEKARLDGISTYFDEDLLNSLMA-LSIGDEIP 71
Query: 336 PVFYKAVAQLIYKI 349
Y VA+++ +
Sbjct: 72 YQLYDIVAKVLQYV 85
>gi|313639094|gb|EFS04070.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL
S4-171]
Length = 42
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY 46
M+ DNKTE + ++I+ A NEGN S+E + S+L
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGL 42
>gi|313610165|gb|EFR85468.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
F2-208]
Length = 38
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA 42
M+ DNKTE + ++I+ A NEGN S+E + S+L
Sbjct: 1 MA----KDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLI 38
>gi|213422289|ref|ZP_03355355.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 103
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
R + D + I+ + L +A ++P + ++ + S ++ + + ++P F
Sbjct: 7 HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
+++ GIKR++S +K+ +K LVG +
Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGF 103
>gi|213420256|ref|ZP_03353322.1| surface presentation of antigens protein SpaS [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 50
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP 53
NKTE P+ K++ED+ +G + S++ + L + YL+ + S
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGSF 48
>gi|185177905|pdb|3C01|E Chain E, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177907|pdb|3C01|F Chain F, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177909|pdb|3C01|G Chain G, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177911|pdb|3C01|H Chain H, Crystal Structural Of Native Spas C-Terminal Domain
Length = 98
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
PTH + + + P++ N A +R A + +P+ + LARSLFK
Sbjct: 1 PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRY 60
Query: 332 SAIPPVFYKAVAQLIYKI 349
+ V +L+ +
Sbjct: 61 DLVSLEEIDEVLRLLVWL 78
>gi|56964047|ref|YP_175778.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16]
gi|56910290|dbj|BAD64817.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16]
Length = 161
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A AL Y + AP LVAKG A+ M A + IP+ + L+ L +
Sbjct: 7 KRAYALSYKDG-DVAPRLVAKGARKQAEAMVAEAKKQGIPVIKHQQLSEEL-AHLREMQF 64
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP Y+ A+L ++
Sbjct: 65 IPESLYEVAAELFVFLHSL 83
>gi|262276369|ref|ZP_06054178.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886]
gi|262220177|gb|EEY71493.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886]
Length = 97
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL+Y P + AKG + +A+ + + ++ I + +L L + +
Sbjct: 5 KSAIALKYDGINT--PKVSAKGYDQLAEILIEEMEKNGGLIHSDEALMNWL-SALEVGDE 61
Query: 334 IPPVFYKAVAQLIYKIYHK 352
IP FY +A+LI ++
Sbjct: 62 IPEQFYLVIAELIAFAWYL 80
>gi|225374460|ref|ZP_03751681.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM
16841]
gi|225213698|gb|EEG96052.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM
16841]
Length = 67
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+A+K+ A E+++P +++ LA +L ++ I AIPP Y+ VA+++ +
Sbjct: 1 MAEKIIAKAKENDVPFYKDNKLAETL-SKLEIGDAIPPELYEVVAEILVFV 50
>gi|213021866|ref|ZP_03336313.1| surface presentation of antigens protein SpaS [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 61
Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++
Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59
Query: 67 AS 68
A
Sbjct: 60 AD 61
>gi|331005471|ref|ZP_08328850.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989]
gi|330420747|gb|EGG95034.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989]
Length = 94
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY--EHNIPIFEEPSLARSLFKQV 328
N + LRY + E P ++ KG A+ + + + I + LA+ L+K
Sbjct: 6 NDLKKVVGLRYKKDE-GLPRVILKGAGHFAEDIIDKGHNLKKGPLIIQNELLAKQLYKMS 64
Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
I++ I P ++ VA ++ +Y
Sbjct: 65 -IDTEIRPELFELVATVLTHLY 85
>gi|226326421|ref|ZP_03801939.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198]
gi|225205204|gb|EEG87558.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198]
Length = 176
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 6/176 (3%)
Query: 46 YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
+ F LL T L + +S +++P L++ +
Sbjct: 1 MMYIFHQTDFTEFIRFYQSLLLHPTNITL------KSYIEVISKVFFDIILPILVVTALV 54
Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
G L + L +K R++ G K+I+S+ + +F+K+ + I++ +
Sbjct: 55 GTIPSLFESRFKLATEAIKLDLTRINPISGFKKIFSLRTVKDFIKTLLFIVVFIITCYLF 114
Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
+ + + + ++ V + + + T + + + +
Sbjct: 115 IIVYGREIFFLYRSGLNQVIDKWGSLVVSFIFVFFYIVFTYSYFKYYNGFLSFLKR 170
>gi|323155905|gb|EFZ42072.1| escU domain protein [Escherichia coli EPECa14]
Length = 55
Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
+L +V D + H+ K+KMSK E+K E K + GNP IK ++ +
Sbjct: 1 MLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEI 55
>gi|323941620|gb|EGB37800.1| type III secretion protein SctU [Escherichia coli E482]
Length = 120
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
+L +YL + F ++ + S L +L + + D + + + +IP L
Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTIIPFL 52
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
L+ M I Q L VK F ++ G+KRI+ + + F+K+ + II
Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFV 112
Query: 160 T 160
Sbjct: 113 I 113
>gi|332297553|ref|YP_004439475.1| FlhB domain protein [Treponema brennaborense DSM 12168]
gi|332180656|gb|AEE16344.1| FlhB domain protein [Treponema brennaborense DSM 12168]
Length = 98
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
M+ A A+AL+Y DAP + + +A ++ +A E IP+ ++
Sbjct: 1 MDEFQAAGCASGV--RKAVALQY-PAGADAPFIAVSAKGALADRVEALAKELGIPVKKDE 57
Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
LA L S +P Y+A+A++ I
Sbjct: 58 ILANVL-SVCDAGSYVPVQTYEALAKIFIFIQK 89
>gi|218671828|ref|ZP_03521497.1| type III secretion system translocation protein [Rhizobium etli
GR56]
Length = 107
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 33/96 (34%)
Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
+ ++ L + +L++ + DI S + + +M+
Sbjct: 7 ILYFLNSIFWSPLCGEACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMT 66
Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
K E + E K + G+P +K+ ++ I
Sbjct: 67 KTEARREYKDTQGDPKLKSARRQIGAEMRSSPPRRQ 102
>gi|133872993|gb|ABO40489.1| EscU [Vibrio parahaemolyticus]
Length = 54
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
NPTH + + Y PV++ +A + RK IPI E LAR++
Sbjct: 1 NPTHILVPVCYDPKIERRPVVLKICTESLALEERKRLEAMGIPIIEHIPLARAM 54
>gi|228900352|ref|ZP_04064581.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
gi|228859239|gb|EEN03670.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
Length = 44
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ E LARSL+ QV + IP Y AV +++ +
Sbjct: 1 MVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 38
>gi|158524068|gb|ABW71141.1| putative type III secretion apparatus protein [Vibrio
parahaemolyticus]
Length = 160
Score = 57.2 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 61/158 (38%), Gaps = 1/158 (0%)
Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
+ I L V LL ++ + +++ V++ + +++ G K
Sbjct: 3 ADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVISTESLGLKMDKINPINGTK 62
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHSILYHAFFTVRKVL 196
I+ + + + ++++ + ++ + N +Y+ +++
Sbjct: 63 NIFGVEAISRSFRKVLELLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAAS 122
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
+ L++ + +D + + K +M+ E+K+E+K
Sbjct: 123 VFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNELK 160
>gi|301303005|ref|ZP_07209132.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1]
gi|300841669|gb|EFK69429.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1]
Length = 67
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
+ +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++
Sbjct: 1 MLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERI 60
Query: 251 R 251
R
Sbjct: 61 R 61
>gi|158524090|gb|ABW71152.1| putative type III secretion apparatus protein [Vibrio
parahaemolyticus]
Length = 147
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 58/145 (40%), Gaps = 1/145 (0%)
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
V LL ++ + +++ V++ + +++ G K I+ + + +
Sbjct: 3 LWWCVGGLALLKLVMAVFEWVMINKAVISTESLGLKMDKINPVNGTKNIFGVEAISRSFR 62
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISAN-PHSILYHAFFTVRKVLIMILLFIATLTVL 209
++++ + ++ + N +Y+ +++ + L++ + +
Sbjct: 63 KVLELLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAASVFYLVYGLCVGTV 122
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIK 234
D + + K +M+ E+K+E+K
Sbjct: 123 DFMAEKYHFLHKNRMTFTEMKNELK 147
>gi|229916629|ref|YP_002885275.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
AT1b]
gi|229468058|gb|ACQ69830.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
AT1b]
Length = 96
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A +RY +T + APV+VA+G +A+K+ + A + + E + + AIP
Sbjct: 13 AAVVRYDETTDKAPVVVARGTGAVAEKILQEARARGVAV-ENDHSLLGHLLDLDLGDAIP 71
Query: 336 PVFYKAVAQLI 346
P Y +A+++
Sbjct: 72 PQLYDVMAEVL 82
>gi|331005339|ref|ZP_08328725.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989]
gi|330420854|gb|EGG95134.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989]
Length = 105
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A+AL Y + AP + AKG+ A+++ IA EH + + E + L + +
Sbjct: 19 RQAVALFYD--GDSAPTISAKGEGNTAQEIIDIAREHGVTLCENKA-LLELLMTLELGEE 75
Query: 334 IPPVFY 339
IP Y
Sbjct: 76 IPENLY 81
>gi|185177884|pdb|3BZL|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177886|pdb|3BZL|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177888|pdb|3BZO|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain
gi|185177894|pdb|3BZV|A Chain A, Crystal Structural Of The Mutated T264a Escu C-Terminal
Domain
gi|185177896|pdb|3BZX|A Chain A, Crystal Structure Of The Mutated H265a Escu C-Terminal
Domain
gi|185177898|pdb|3BZY|A Chain A, Crystal Structure Of The Mutated Y316d Escu C-Terminal
Domain
gi|185177900|pdb|3BZZ|A Chain A, Crystal Structural Of The Mutated R313t EscuSPAS C-
Terminal Domain
Length = 54
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
MSK E+K E K + GNP IK ++ + + ++T+I+ N
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN 54
>gi|312876516|ref|ZP_07736499.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796727|gb|EFR13073.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
lactoaceticus 6A]
Length = 52
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY 46
KTE + +K ++A G SRE + ++L +++
Sbjct: 16 KTEKATRRKRQEARKRGMVAKSREVTSAFALLISVLF 52
>gi|185177902|pdb|3C00|A Chain A, Crystal Structural Of The Mutated G247t EscuSPAS C-
Terminal Domain
Length = 54
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
MSK E+K E K + GNP IK ++ + + ++T+I+ N
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSTSLANNIKKSTVIVKN 54
>gi|300820657|ref|ZP_07100808.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
gi|309793918|ref|ZP_07688343.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
gi|300526921|gb|EFK47990.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
gi|308122325|gb|EFO59587.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
Length = 55
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+ + + D Y + +KM KQE+K E K+ GNP IK++++ R
Sbjct: 1 MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 49
>gi|185177913|pdb|3C03|B Chain B, Crystal Structure Of The Escu C-Terminal Domain With P263a
Mutation,Space Group P 1 21 1
Length = 54
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
MSK E+K E K + GNP IK ++ + + ++T+I+
Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIV 52
>gi|238759387|ref|ZP_04620552.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236]
gi|238702414|gb|EEP94966.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236]
Length = 103
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
KTE P+ KKI D+ +G + S++ ++A + F S + + S L +L S
Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAVSGFSS--LMGLGSLLQKILLS 60
Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
+ +E LL L V+P LL
Sbjct: 61 PSAIGVE------ALLDKLYSLFLLAVVPVLLACF 89
>gi|323183410|gb|EFZ68807.1| surface presentation of antigens protein spaS domain protein
[Escherichia coli 1357]
Length = 98
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
++ + N +A +RK A E IPI + LAR ++ + ++ + +++ +
Sbjct: 1 MISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLL 57
Query: 350 YHKK 353
+
Sbjct: 58 LWLE 61
>gi|315453181|ref|YP_004073451.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC
49179]
gi|315132233|emb|CBY82861.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC
49179]
Length = 88
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
A+AL Y ++ AP +VA G ++A+ + A ++P+F +L SL V +++ IP
Sbjct: 6 AVALAYNVGQDSAPKVVASGVGVVARAIVDKAKAFDVPLFCNEALVESLLD-VRLDTPIP 64
Query: 336 PVFYKAVAQLIYKI 349
P Y +V ++ +
Sbjct: 65 PELYASVVEVFIWL 78
>gi|229138470|ref|ZP_04267059.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
gi|228645007|gb|EEL01250.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
Length = 44
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ E LARSL+ QV + AIP Y AV +++ +
Sbjct: 1 MVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 38
>gi|213025709|ref|ZP_03340156.1| surface presentation of antigens protein SpaS [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 119
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 45/116 (38%)
Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
+ + + +IP +LL ++ L+Q VL +KP+ ++ EG K
Sbjct: 4 QSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLSALNPVEGAK 63
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
+++S+ + + +K+ + + I + + ++ N I +
Sbjct: 64 KLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLL 119
>gi|185177904|pdb|3C01|A Chain A, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177906|pdb|3C01|B Chain B, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177908|pdb|3C01|C Chain C, Crystal Structural Of Native Spas C-Terminal Domain
gi|185177910|pdb|3C01|D Chain D, Crystal Structural Of Native Spas C-Terminal Domain
Length = 48
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
M K+E+K E+K+ GNP +K++++ + + ++ + +I+ N
Sbjct: 1 MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN 48
>gi|300906603|ref|ZP_07124294.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1]
gi|300401642|gb|EFJ85180.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1]
gi|315256730|gb|EFU36698.1| surface presentation of antigens protein SpaS [Escherichia coli MS
85-1]
gi|323183411|gb|EFZ68808.1| surface presentation of antigens protein spaS domain protein
[Escherichia coli 1357]
Length = 55
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+ + + D Y + +KM KQE+K E K+ GNP IK++++ R
Sbjct: 1 MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERIR 49
>gi|330885029|gb|EGH19178.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 39
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 18 KIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52
K+ DA +G S++ IL C + +
Sbjct: 1 KLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP 35
>gi|313610159|gb|EFR85464.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
F2-208]
Length = 53
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
++A +P+ LARS++ + I YK V +++ ++
Sbjct: 1 QVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVMKELM 46
>gi|7350919|gb|AAF61287.1| HrpC1 [Xanthomonas oryzae pv. oryzae]
Length = 21
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 7 PDNKTEAPSSKKIEDALNEG 26
+ KTE P+ KK+ DA +G
Sbjct: 2 SEEKTEKPTEKKLRDARKDG 21
>gi|188595908|pdb|2VT1|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The
Specificity Switch For The Shigella Flexneri Type Iii
Secretion System
Length = 52
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
+ M KQEIK E + G+ K+R++ + + + + +++ N
Sbjct: 2 DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN 52
>gi|172058438|ref|YP_001814898.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium
sibiricum 255-15]
gi|171990959|gb|ACB61881.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium
sibiricum 255-15]
Length = 96
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
A LRY + +AP++VA+ A ++ + A + I ++ S + + +A
Sbjct: 11 KSAAVLRYDEASGNAPIVVARATGAAADRILQEARASGVAIEQDTS-LLGHLLDLDLGTA 69
Query: 334 IPPVFYKAVA 343
IPP Y +A
Sbjct: 70 IPPQLYDVMA 79
>gi|330893582|gb|EGH26243.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
mori str. 301020]
Length = 83
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 38/82 (46%)
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
S +K + +G + + + ++ +++ + + R +L +IL + + ++D
Sbjct: 2 SILKAVAIGATLYMQVKPALGALILLANSDLTTYWHALVELFRHILRVILGLLLVVAMVD 61
Query: 211 IGWSYHQWYSKLKMSKQEIKDE 232
+ KL+MS ++IK E
Sbjct: 62 FAMQKYFHAKKLRMSHEDIKKE 83
>gi|320202502|gb|EFW77072.1| surface presentation of antigens protein SpaS [Escherichia coli
EC4100B]
Length = 89
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +RK A E IPI + LAR ++ + ++ + +++ + +
Sbjct: 1 MALGVRKYAKEIGIPIITDKKLARKIYATHRRYDYVS---FENIDEILRLLLWLE 52
>gi|301026127|ref|ZP_07189601.1| conserved domain protein [Escherichia coli MS 196-1]
gi|312972921|ref|ZP_07787094.1| surface presentation of antigens spaS domain protein [Escherichia
coli 1827-70]
gi|299879822|gb|EFI88033.1| conserved domain protein [Escherichia coli MS 196-1]
gi|310332863|gb|EFQ00077.1| surface presentation of antigens spaS domain protein [Escherichia
coli 1827-70]
Length = 39
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
+KM KQE+K E K+ GNP IK++++ R
Sbjct: 1 MKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 33
>gi|12597304|gb|AAG60026.1| NADH dehydrogenase subunit 5 [Schistosoma malayensis]
Length = 332
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 1/177 (0%)
Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
+L L F + V ++ + L I + L + S+ +
Sbjct: 128 FVLLMGLSGFPFMGLYFSKHIFLSEVVGMSYFSIMFLFFIVVGIMLSSAYSVRLFIIFFG 187
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
L + + + + + SL S+ +L F V ++
Sbjct: 188 SLTFGCYTMRVCFYMILMIPIVSTVLGYHLS-FSLFNYFGGFMSLLSLFVFFIMMVGVLF 246
Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
I + + +Y F V + + +F + + D
Sbjct: 247 GVYIGCWYSECRNSWIGYLCGVDYLVYMYSCFINVFWDYLFLSVFRWEVGLFDYICY 303
>gi|323180301|gb|EFZ65853.1| surface presentation of antigens protein spaS domain protein
[Escherichia coli 1180]
Length = 93
Score = 44.5 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A +RK A E IPI + LAR + + ++ + +++ + +
Sbjct: 1 MALGVRKYAKEIGIPIITDKKLARKNYATHRRYDYVS---FENIDEILRLLLWLE 52
>gi|23098997|ref|NP_692463.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831]
gi|22777225|dbj|BAC13498.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831]
Length = 41
Score = 44.5 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
+ ++ IN +IP Y AVA++ +Y
Sbjct: 3 EILAELNINESIPDELYMAVAEVFAFVYQ 31
>gi|194865524|ref|XP_001971472.1| GG14980 [Drosophila erecta]
gi|190653255|gb|EDV50498.1| GG14980 [Drosophila erecta]
Length = 478
Score = 43.7 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + + + + + +
Sbjct: 258 GQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFI--ALGQKFFIDRFAFSAAEANTVDSL 315
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L V P + G+
Sbjct: 316 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQVTPYVGMI--IMGLSY 373
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A ++
Sbjct: 374 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFF 433
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA ++ I ++ L M+ Q+
Sbjct: 434 MGWLTIALISTGIIWAYNNKHRGNLNMTPQQ 464
>gi|12249131|ref|NP_065421.2| NADH dehydrogenase subunit 5 [Schistosoma mekongi]
gi|12248354|gb|AAG12178.2| NADH dehydrogenase subunit 5 [Schistosoma mekongi]
Length = 530
Score = 43.7 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 1/188 (0%)
Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
+L L F V V ++ + L + + L + S+ +
Sbjct: 325 MFILLLGLSGFPFMGLYFSKHVFLSSVVSMSYFSIIFLLFVIVGLMLSSAYSVRLFIIFF 384
Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
GL + I I + + SL S+ +L F+ ++
Sbjct: 385 GGLTFGCYTTRMCFYIVLIVPMIGTFLGYHLS-FSLFNYFSGFMSLLSLFILFIMFIGVL 443
Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
L I + + + +Y+ F ++ + + +F + + D
Sbjct: 444 LGVYIGYWCSEYSKSWIGYLCGIDYLVYMYNCFMSIFWDYVFLGIFRWEVGLFDYICYLV 503
Query: 217 QWYSKLKM 224
+S M
Sbjct: 504 NSFSVSYM 511
>gi|195588424|ref|XP_002083958.1| GD13074 [Drosophila simulans]
gi|194195967|gb|EDX09543.1| GD13074 [Drosophila simulans]
Length = 451
Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + V + + + +
Sbjct: 231 GQIPKLTDVFSFKAPFWMVSIICVAYYVAIFPFI--ALGQNFFVDRFGLSPAEANTVDSL 288
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L + P + G+
Sbjct: 289 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQLTPYVGMI--IMGLSY 346
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A ++
Sbjct: 347 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIIVDNSGGEHMWLQLFF 406
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA ++ I ++ L M+ Q+
Sbjct: 407 MGWLTIALISTGVIWAYNNKHRGNLNMTPQQ 437
>gi|21356765|ref|NP_648103.1| CG8602 [Drosophila melanogaster]
gi|7295260|gb|AAF50582.1| CG8602 [Drosophila melanogaster]
gi|17862592|gb|AAL39773.1| LD39967p [Drosophila melanogaster]
gi|220946170|gb|ACL85628.1| CG8602-PA [synthetic construct]
Length = 478
Score = 42.9 bits (100), Expect = 0.076, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + V + + + +
Sbjct: 258 GQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFI--ALGQNFFVDRFGLSPAEANTVDSL 315
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L + P + G+
Sbjct: 316 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQLTPYVGMI--IMGLSY 373
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A ++
Sbjct: 374 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFF 433
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA ++ I ++ L M+ Q+
Sbjct: 434 MGWLTIALISTGVIWAYNNKNRGNLNMTPQQ 464
>gi|195338131|ref|XP_002035679.1| GM13776 [Drosophila sechellia]
gi|194128772|gb|EDW50815.1| GM13776 [Drosophila sechellia]
Length = 478
Score = 42.9 bits (100), Expect = 0.079, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + V + + + +
Sbjct: 258 GQIPKLTDVFSFKAPFWMVSIICVAYYVAIFPFI--ALGQNFFVDRFGLSPAEANTVDSL 315
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L + P + G+
Sbjct: 316 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQLTPYVGMI--IMGLSY 373
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A ++
Sbjct: 374 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIIVDNSGGEHMWLQLFF 433
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA ++ I ++ L M+ Q+
Sbjct: 434 MGWLTIALISTGVIWAYNNKHRGNLNMTPQQ 464
>gi|127513969|ref|YP_001095166.1| hypothetical protein Shew_3041 [Shewanella loihica PV-4]
gi|126639264|gb|ABO24907.1| hypothetical protein Shew_3041 [Shewanella loihica PV-4]
Length = 309
Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISR-EASLFSSILACLIYLLFFFSPGIYSVTS 60
+ ++ D KTE + + A + P + E ++ ++ I+ + Y + +
Sbjct: 246 AASEQADEKTEKAT----DKAKKK---PSTTVEVMVWVLMIGGFIFFCWLT----YKLFT 294
Query: 61 DLHVLLASATQR 72
+ L+ A +R
Sbjct: 295 FIFTLMGGAWRR 306
>gi|195492509|ref|XP_002094022.1| GE20427 [Drosophila yakuba]
gi|194180123|gb|EDW93734.1| GE20427 [Drosophila yakuba]
Length = 480
Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + + + + +
Sbjct: 260 GQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFI--ALGQKFFIDRFGFSPAEANTVDSL 317
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L V P V G+
Sbjct: 318 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQVTPYVGMV--IMGLSY 375
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A S + ++
Sbjct: 376 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIISDYSGSEHMWLQLFF 435
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA ++ I ++ L M+ Q+
Sbjct: 436 MGWLTIALISTGIIWAYNNKHRGNLNMTPQQ 466
>gi|159465027|ref|XP_001690733.1| hypothetical protein CHLREDRAFT_180799 [Chlamydomonas reinhardtii]
gi|158270357|gb|EDO96210.1| predicted protein [Chlamydomonas reinhardtii]
Length = 580
Score = 42.2 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 10/189 (5%)
Query: 33 EASL-FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
E + F+S+ A L F + S ++ L A R + D+ FL + +
Sbjct: 398 ELFMGFASLFAALFTFPSEFQMLVKERQSGMYRLSAFYVARTVSDLPMDCFLPSLFTWIV 457
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
+ L F + +I + + ++ + G +
Sbjct: 458 YFMAGLRLNAGAFFANWASVILIVLTSQSMGLLIGATVINPQNG-------QTIATIFML 510
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
++ + I + ++ + FI + +L ++V I+I + I +
Sbjct: 511 STMLVGGYYVRGIPVWISWLKYVSFIYWGWNLLLK--APVTKEVCILIAMLIFLRLCIYY 568
Query: 212 GWSYHQWYS 220
Y +
Sbjct: 569 ALQYKTTFK 577
>gi|194750893|ref|XP_001957764.1| GF23860 [Drosophila ananassae]
gi|190625046|gb|EDV40570.1| GF23860 [Drosophila ananassae]
Length = 478
Score = 42.2 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + V T+++ + +
Sbjct: 258 GQIPKLTDIFTFKAPFWMVSIICVAYYVAIFPFI--ALGQNFFVDRFGLTKKEANTVDSL 315
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I L + + + L I +L + P + G+
Sbjct: 316 VYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIGAHALLTFTQLTPYVGMI--VMGLSY 373
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A T ++
Sbjct: 374 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIIAGIIVDHSGKNHTWVQLFF 433
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L +A + I + + L M+ Q+
Sbjct: 434 MGWLTVALIATGIIWGYNKKHHGNLNMTPQQ 464
>gi|119775967|ref|YP_928707.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
SB2B]
gi|119768467|gb|ABM01038.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
SB2B]
Length = 512
Score = 41.4 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 36/164 (21%), Gaps = 11/164 (6%)
Query: 43 CLIYLLFFFSPGIYS----VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
LI L F + + DL L + ++ + +
Sbjct: 89 GLIALFFLLPFISWHGRQAIWFDLSNQQFYFFGTSLWPQDFTLLAWVFIAAAFGLFFVTL 148
Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------NFMKSF 152
+ G Q + K R + K +S L +
Sbjct: 149 FWGRVWCGFLCPQTQWTFMFAWVEEKFEGSRNQRIKLDKAPWSREKLSKRLGKHSSWLLM 208
Query: 153 VKIILVGTIITIS-LTENYFTMLDFISANPHSILYHAFFTVRKV 195
+ G I E Y + F + F +
Sbjct: 209 SLLTGCGFIAYFVPARELYPAIFSFSGGFWDTAWVWFFAICTYL 252
>gi|115616517|ref|XP_001202282.1| PREDICTED: similar to laccase 1 [Strongylocentrotus purpuratus]
gi|115621424|ref|XP_001199789.1| PREDICTED: similar to laccase 1 [Strongylocentrotus purpuratus]
Length = 890
Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 13/195 (6%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASR 93
F ++L C L FFS L + V LL + ++
Sbjct: 428 SFVTLLFCSFVTLLFFSFVTLIFVILLFYYFVTLLFYSFVTFSFFSFVTLLFYSFVTLLF 487
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP---------SFKRVSLREGIKRIY--SI 142
L F + Y P + + SF + + + +
Sbjct: 488 YSFVTLPFFSFVTLPFYSFVTFPFFSFVTLLFYSFVTLLFYSFVTLRFFSFVTLPFYSFV 547
Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
LV + + V + T +F+ + F+ + ++L+++F T+ +ILLF
Sbjct: 548 TLLVFSFGTLLFFAFVTLLFYSFGTLPFFSFVTFLFYSFVTLLFYSFITLLFYSFVILLF 607
Query: 203 IATLTVLDIGWSYHQ 217
+ L +
Sbjct: 608 YSFFADLRYWEDEYN 622
>gi|326431829|gb|EGD77399.1| hypothetical protein PTSG_08494 [Salpingoeca sp. ATCC 50818]
Length = 1587
Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 16/241 (6%)
Query: 16 SKKIEDALNE----GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA-- 69
+K++D + G ++ S S L + S I + +L+ +
Sbjct: 989 QRKLDDLRKKGRLRGQLLR-QQQSSAKSTLGFFTLTYYSLSLWISRLWRNLYQFFTTFEL 1047
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
R+L ++ + + +R +I + + + + + L F
Sbjct: 1048 FGRRLHEVEGQFGTVVYQYFVFARSLILLNFICAIA--WAAFVIIPQSILLQEPDVDFDP 1105
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
L G Y + + I + T T L +I+
Sbjct: 1106 SDLLTGSG--YFLQTTLYIGSYSNTSIPYAGLDWDMPTAYLGTALGTFLLAMVAIVITMV 1163
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
++ D + + K+E+ ++KQ K+ +
Sbjct: 1164 RRHFNSIVRQTDGKNIYPFPDAVFCSWDFT-----IKKEVGKKLKQDQIGNQFKDLLRRA 1218
Query: 250 A 250
Sbjct: 1219 Q 1219
>gi|116878483|ref|YP_356410.2| hypothetical protein Pcar_0987 [Pelobacter carbinolicus DSM 2380]
gi|114843119|gb|ABA88240.2| hypothetical protein Pcar_0987 [Pelobacter carbinolicus DSM 2380]
Length = 282
Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 19/193 (9%)
Query: 24 NEGNAP-ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
+G SR+ +LF ++L L + + + + + ++D +
Sbjct: 3 EKGKTQDRSRDLNLFIALLGILAPASYLIGLSFHQGSLSAYGINPEVLPFSIQDSYITAY 62
Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
LS +I L + G ++ + +L+ F ++ + I +
Sbjct: 63 YAVSCFLSGLSKIIINFLNSIFSAPGVFIFIGVVLLSSLLWHC-FNKLKPVDKIC-CFCK 120
Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
+G II +N + + S + + L + +
Sbjct: 121 R-----------FQTIGRIIEYFHWDNNGYIRTLFLTSSMS-----YVLITTSLFFVSIS 164
Query: 203 IATLTVLDIGWSY 215
+ +
Sbjct: 165 FFWFAIPYYAYQK 177
>gi|229088879|ref|ZP_04220342.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44]
gi|228694438|gb|EEL47951.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44]
Length = 480
Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 21/185 (11%), Positives = 59/185 (31%), Gaps = 4/185 (2%)
Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
S A+L + LI F + + ++ + ++ ++ T
Sbjct: 65 IAKSMSATLILITVGALIGTWMFSGTIPMMIFYGIELINPNYLFVTAFLVTALISTFTGT 124
Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
S ++ V ++ M S I V+ +S + + + +NL
Sbjct: 125 SWGSAGTVGVAIMGIAMVQGVSLPITAGAVVAGAFFGDKLSPLSDTTNLSPVVAGSNLYE 184
Query: 148 FMKSFVKIIL----VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
++ + + +G ++ + + +T F ++ +++I+ +
Sbjct: 185 HIRHLLYTTIPASLIGLVVYFIVGWSTYTSNAFDREKIEAMTSALTAMFHWNVLLIVPVL 244
Query: 204 ATLTV 208
L
Sbjct: 245 IVLVG 249
>gi|258422853|ref|ZP_05685753.1| lytic regulatory protein [Staphylococcus aureus A9635]
gi|257846877|gb|EEV70891.1| lytic regulatory protein [Staphylococcus aureus A9635]
Length = 363
Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 86/218 (39%), Gaps = 18/218 (8%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSVAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
V + +T S+ +++ ++ + I + I V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWLLLIPVFNIMTSFVEST----------NDKVKTHLA 214
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LI 197
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 215 NGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVM 274
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 275 TIILFVVIHAIILMGIVQYYLKRGQKITKDKVKAADKN 312
>gi|300811838|ref|ZP_07092306.1| putative arginine/ornithine antiporter [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497179|gb|EFK32233.1| putative arginine/ornithine antiporter [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 475
Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 5/180 (2%)
Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
+++L ++ L+F+ I LASA Q L S + ++ + + +
Sbjct: 241 ATMLGFVLLLVFYMMISILPYGLLTRAQLASAAQPAL--GSDLKMIVGDWGMMIINIGLI 298
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-KRVSLREGIKRIYSINNLVN--FMKSFVK 154
+ + + ++ + P F +++ ++ ++ F+ S +
Sbjct: 299 ISTIVSWLSWTMLPAETMLLIAEDGAAPKFWGKLNSKKAPTNALFTTAILQTIFLFSLLF 358
Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
+ F+ + + ++ + ++ GW
Sbjct: 359 TDKAYEFCYTLASSAILFSYMFVGLYQMKFSRERKEWTQWIYGLLAALFQFMCMILAGWQ 418
>gi|332798766|ref|YP_004460265.1| Na+/solute symporter [Tepidanaerobacter sp. Re1]
gi|332696501|gb|AEE90958.1| Na+/solute symporter [Tepidanaerobacter sp. Re1]
Length = 465
Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 59/186 (31%), Gaps = 9/186 (4%)
Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
A +GN S I L+ ++ FF I L L + + +
Sbjct: 250 AAKDGNVAK-----TASIIGGVLLVIISFFPTIIGMGARALSDLDSGGNSFPWVVQNLMN 304
Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV--LNLNHVKPSFKRVSLREGIKRI 139
++ + L+A I ++ S++++ + ++ +K K +++
Sbjct: 305 PVIGGIVLAAILSAIMSTADSLLTAATSHIVKDFWIETFQMDEIKDEKKLLNISRNFT-- 362
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
+ I L + + I+ I + ++ + S + ++
Sbjct: 363 FIIGILGLLIALIMPGIIDALIYSYTMYSAGVFIPVIGGVLWESATREGALASLIIGSIV 422
Query: 200 LLFIAT 205
L+
Sbjct: 423 ALWGIL 428
>gi|298483365|ref|ZP_07001543.1| hypothetical protein HMPREF0106_03834 [Bacteroides sp. D22]
gi|298270494|gb|EFI12077.1| hypothetical protein HMPREF0106_03834 [Bacteroides sp. D22]
Length = 457
Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 14/195 (7%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSD----LHVLLASATQRKLEDISHIVFLLTHL 87
+E + ILAC L S + +D L L+ + Q +I+ T
Sbjct: 143 KELQVVFGILACFFCLNIVASVFTTMLMADQKPALASLIQTGGQLLAFIAIYILTKTTMG 202
Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
SL A V G+ F++ + L +K ++ R ++
Sbjct: 203 SLVALAFVFSGIPCFLLISLSVVLFCTK----------KYKDIAPSIQSIRFSLTRKILG 252
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
F I + I + + + ++I Y F + V +IL +
Sbjct: 253 LGGQFFIITISMLFIYQFVNIIISRIEGPEAVTQYNIAYKYFNVLNMVAFVILTPFWSAF 312
Query: 208 VLDIGWSYHQWYSKL 222
+W ++
Sbjct: 313 TDAYVQKDFEWMKRI 327
>gi|83771567|dbj|BAE61698.1| unnamed protein product [Aspergillus oryzae]
Length = 622
Score = 40.6 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 20/197 (10%)
Query: 13 APSSKKIEDALNEGN-APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
+ +I+ +G SRE ++ IY +F+++ + +D LL
Sbjct: 234 DATEFRIQ-TRKKGEKVVTSRELTIT------YIYNVFYWAINVVGFVADATPLLERYVG 286
Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
L L L +IP LL + + + ++ KP +
Sbjct: 287 FWL-------AYLIPCCL-MWLALIPVLLAAITLVVAALRCGISGGFRMDAAKPHAQ--- 335
Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
+ + + ++ V +K + V + I T + IS + Y
Sbjct: 336 -LQHGRVVPWTDSFVEDIKRSLLTCQVLLLFPIHWLCYNQTFNNLISQAGQMVTYGIPND 394
Query: 192 VRKVLIMILLFIATLTV 208
+ K+ I I +
Sbjct: 395 MMKIAGAISGIIVAPII 411
>gi|146181472|ref|XP_001022822.2| ABC transporter family protein [Tetrahymena thermophila]
gi|146144171|gb|EAS02577.2| ABC transporter family protein [Tetrahymena thermophila SB210]
Length = 1494
Score = 40.2 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 20/220 (9%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVL 65
++K PS K E+ + S + S ++ I+L+FF + S + +
Sbjct: 839 EDK--KPSEVKNEEVREQ----SSIKFSTLATYFSTMGYIFLMFFLAFNFLMQGSQMLID 892
Query: 66 L--ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
T + ++I + + L+ L + + S+ +L+ +
Sbjct: 893 FWLRDYTNHQSSFFNNINDTFDTFTKAFFFLIFLNLGITA---LRSFFYCLCALLSSRRM 949
Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
+ S+ + + N + + + ++ M S
Sbjct: 950 FLKLNK-SILFSKMKFFDTNPVGRIISRLADDVDSVD--YYLPWQSQTFMEQLAY----S 1002
Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
I Y V+ I+I++ I + + + ++K
Sbjct: 1003 IGYPVGIIVQFPWIVIIILICFAFIYYVQRQFRDSNREIK 1042
>gi|125977304|ref|XP_001352685.1| GA21198 [Drosophila pseudoobscura pseudoobscura]
gi|54641434|gb|EAL30184.1| GA21198 [Drosophila pseudoobscura pseudoobscura]
Length = 480
Score = 39.8 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 12/209 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + T + + +
Sbjct: 260 GQVPKLTDIFTFKPPFWMVSIICVAYYVAIFPFI--ALGQKFFMDRFGLTPSEANTVDSL 317
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I + + + + L I +L V P + G+
Sbjct: 318 VYLIAAVSSPIFGYIIDKVGRNVSWVFTATLTTIGAHALLTFTGVSPYVGMI--IMGLSY 375
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A H T ++
Sbjct: 376 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITILAGIIVDHSHNDHTWVQLFF 435
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSK 226
M L IA + I + L M+
Sbjct: 436 MGWLTIALIATGVIWAYNKKQQGNLNMTP 464
>gi|194913157|ref|XP_001982634.1| GG12631 [Drosophila erecta]
gi|190648310|gb|EDV45603.1| GG12631 [Drosophila erecta]
Length = 740
Score = 39.8 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
SR+ S+ ++L F + Y + L + + + + I L L +
Sbjct: 544 RSRDVSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMGLMQLIV 603
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNF 148
S + ++ + ++ + + +L L+ KPS +L I + N +
Sbjct: 604 SCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALFYVIAASWGACNGMWET 663
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ + + + +T +L F + I+ L+ + ++V
Sbjct: 664 LLLSLVTLNHASHVTEV----QAPLLALRFLGLGLTFAGHGFLCESMKIIALVVLLVISV 719
Query: 209 LDIGWSYHQWYSKLKMS 225
+ ++ K +
Sbjct: 720 PPYATLEIRLEAQRKAT 736
>gi|195174408|ref|XP_002027966.1| GL21156 [Drosophila persimilis]
gi|194115676|gb|EDW37719.1| GL21156 [Drosophila persimilis]
Length = 455
Score = 39.8 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 12/211 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G P + F + C+ Y + F ++ + T + + +
Sbjct: 235 GQVPKLTDIFTFKPPFWMVSIICVAYYVAIFPFI--ALGQKFFMDRFGLTPSEANTVDSL 292
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+L+ +S +I + + + + L I +L V P + G+
Sbjct: 293 VYLIAAVSSPIFGYIIDKVGRNVSWVFTATLTTIGAHALLTFTGVSPYVGMI--IMGLSY 350
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLI 197
+L + + +GT + + + I A H T ++
Sbjct: 351 SMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITILAGIIVDHSHNDHTWVQLFF 410
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
M L IA + I + L M+ +
Sbjct: 411 MGWLTIALIATGVIWAYNKKQQGNLNMTPVQ 441
>gi|157111941|ref|XP_001651759.1| hypothetical protein AaeL_AAEL006002 [Aedes aegypti]
gi|108878230|gb|EAT42455.1| conserved hypothetical protein [Aedes aegypti]
Length = 543
Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 22/249 (8%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G + S F + C+ Y + F + T ++ I
Sbjct: 269 GEVAKLSDISTFKVTFWMVTVICVAYYVAIFPFIALGKVFFMRKF--GFTPEDANTVNSI 326
Query: 81 VFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+++ ++ L++ G + +F + +L P + G+
Sbjct: 327 VYIVAGVASPIFGLIVDRTGRNVLWVFLSIVVTMVAHGLLAFTFYNPYIAMI--TMGLAY 384
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++L + V +GT I + L IS I+ + + ++ +
Sbjct: 385 SMLASSLWPLVALIVPEYQLGTAYGICQSVQNLG-LAVISMFSGLIVDEGGYFMLEIFFI 443
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQE---------IKDEIKQSYG-NPIIKNRQKS 248
L I+ + + I L MS E I++ K G P+ +
Sbjct: 444 GWLVISLIATIVIWLYNSNNNGVLNMSPSERDSHANKLRIEEANKTLEGVQPVSSEGSLN 503
Query: 249 IARSRIRHK 257
+ + +
Sbjct: 504 ADQQEAQQQ 512
>gi|20151347|gb|AAM11033.1| GH06335p [Drosophila melanogaster]
Length = 743
Score = 39.5 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
SR+ S+ ++L F + Y + L + + + + I L L +
Sbjct: 547 RSRDVSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMGLMQLIV 606
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNF 148
S + ++ + ++ + + +L L+ KPS +L I + N +
Sbjct: 607 SCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALFYVIAASWGACNGMWET 666
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ + + + +T +L F + I+ L+ + ++V
Sbjct: 667 LLLSLVTLNHSSHVTEV----QAPLLALRFLGLGLTFAGHGFLCESMKIIALVVLLVISV 722
Query: 209 LDIGWSYHQWYSKLKMS 225
+ ++ K +
Sbjct: 723 PPYATLEIRLEAQRKAT 739
>gi|23397629|ref|NP_569991.2| CG3078 [Drosophila melanogaster]
gi|22831566|gb|AAF45763.2| CG3078 [Drosophila melanogaster]
gi|201065659|gb|ACH92239.1| FI03870p [Drosophila melanogaster]
Length = 743
Score = 39.5 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
SR+ S+ ++L F + Y + L + + + + I L L +
Sbjct: 547 RSRDVSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMGLMQLIV 606
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNF 148
S + ++ + ++ + + +L L+ KPS +L I + N +
Sbjct: 607 SCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALFYVIAASWGACNGMWET 666
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ + + + +T +L F + I+ L+ + ++V
Sbjct: 667 LLLSLVTLNHSSHVTEV----QAPLLALRFLGLGLTFAGHGFLCESMKIIALVVLLVISV 722
Query: 209 LDIGWSYHQWYSKLKMS 225
+ ++ K +
Sbjct: 723 PPYATLEIRLEAQRKAT 739
>gi|195477687|ref|XP_002100278.1| GE16960 [Drosophila yakuba]
gi|194187802|gb|EDX01386.1| GE16960 [Drosophila yakuba]
Length = 741
Score = 39.5 bits (91), Expect = 0.75, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
SR+ S+ ++L F + Y + L + + + + I L L +
Sbjct: 545 RSRDVSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMGLMQLIV 604
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNF 148
S + ++ + ++ + + +L L+ KPS +L I + N +
Sbjct: 605 SCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALFYVIAASWGACNGMWET 664
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ + + + +T +L F + I+ L+ + ++V
Sbjct: 665 LLLSLVTLNHASHVTEV----QAPLLALRFLGLGLTFAGHGFLCESMKIIALVVLLVISV 720
Query: 209 LDIGWSYHQWYSKLKMS 225
+ ++ K +
Sbjct: 721 PPYATLEIRLEAQRKAT 737
>gi|2661577|emb|CAA15704.1| EG:30B8.6 [Drosophila melanogaster]
Length = 744
Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
SR+ S+ ++L F + Y + L + + + + I L L +
Sbjct: 548 RSRDVSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMGLMQLIV 607
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNF 148
S + ++ + ++ + + +L L+ KPS +L I + N +
Sbjct: 608 SCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALFYVIAASWGACNGMWET 667
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ + + + +T +L F + I+ L+ + ++V
Sbjct: 668 LLLSLVTLNHSSHVTEV----QAPLLALRFLGLGLTFAGHGFLCESMKIIALVVLLVISV 723
Query: 209 LDIGWSYHQWYSKLKMS 225
+ ++ K +
Sbjct: 724 PPYATLEIRLEAQRKAT 740
>gi|239994436|ref|ZP_04714960.1| cell division protein FtsW [Alteromonas macleodii ATCC 27126]
Length = 474
Score = 39.5 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 40/135 (29%), Gaps = 6/135 (4%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ + A I LLF ++ + + + + + + + + + L A
Sbjct: 179 DLGTVVVMFATTIGLLFLAGARLWQFFALVFAGILAVVALIVFEEYRMKRVTSFLDPWAD 238
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
L S + + S +++ + + L +
Sbjct: 239 PFGAGYQL------TQSLMAYGRGNWFGQGLGNSLQKLEFLPEAHTDFVMAILAEELGFV 292
Query: 153 VKIILVGTIITISLT 167
+ ++G I+ + L
Sbjct: 293 GVLAVLGLILWMVLR 307
>gi|282909461|ref|ZP_06317276.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958928|ref|ZP_06376373.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|282326731|gb|EFB57029.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283789646|gb|EFC28469.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
A017934/97]
Length = 363
Score = 39.5 bits (91), Expect = 0.84, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
V + +V+ + L+ I + V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V +I
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVIT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ V+ +G + K++K ++K K
Sbjct: 276 IILFVVIHAVILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|302333793|gb|ADL23986.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 363
Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 85/218 (38%), Gaps = 18/218 (8%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
V + +T S+ +++ ++ + I + V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWLLLIPVFNFMTSFVEST----------NDKVKTHLA 214
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LI 197
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 215 NGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVM 274
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 275 TIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|15925137|ref|NP_372671.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus Mu50]
gi|148268598|ref|YP_001247541.1| hypothetical protein SaurJH9_2183 [Staphylococcus aureus subsp.
aureus JH9]
gi|150394662|ref|YP_001317337.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus JH1]
gi|156980462|ref|YP_001442721.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus Mu3]
gi|253315684|ref|ZP_04838897.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|255006935|ref|ZP_05145536.2| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257793441|ref|ZP_05642420.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A9781]
gi|258407535|ref|ZP_05680672.1| lytic regulatory protein [Staphylococcus aureus A9763]
gi|258420840|ref|ZP_05683775.1| lytic regulatory protein [Staphylococcus aureus A9719]
gi|258438822|ref|ZP_05689959.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A9299]
gi|258442455|ref|ZP_05691131.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8115]
gi|258448343|ref|ZP_05696462.1| lytic regulatory protein [Staphylococcus aureus A6224]
gi|258453452|ref|ZP_05701434.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A5937]
gi|269203784|ref|YP_003283053.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ED98]
gi|282894791|ref|ZP_06303017.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8117]
gi|282929179|ref|ZP_06336757.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A10102]
gi|295407079|ref|ZP_06816881.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8819]
gi|296276832|ref|ZP_06859339.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MR1]
gi|297246078|ref|ZP_06929935.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8796]
gi|14247920|dbj|BAB58309.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus Mu50]
gi|147741667|gb|ABQ49965.1| hypothetical protein SaurJH9_2183 [Staphylococcus aureus subsp.
aureus JH9]
gi|149947114|gb|ABR53050.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus JH1]
gi|156722597|dbj|BAF79014.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus Mu3]
gi|257787413|gb|EEV25753.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A9781]
gi|257840864|gb|EEV65320.1| lytic regulatory protein [Staphylococcus aureus A9763]
gi|257843167|gb|EEV67581.1| lytic regulatory protein [Staphylococcus aureus A9719]
gi|257847974|gb|EEV71968.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A9299]
gi|257852027|gb|EEV75960.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8115]
gi|257858388|gb|EEV81271.1| lytic regulatory protein [Staphylococcus aureus A6224]
gi|257864433|gb|EEV87179.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A5937]
gi|262076074|gb|ACY12047.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ED98]
gi|282589210|gb|EFB94306.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A10102]
gi|282762879|gb|EFC03013.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8117]
gi|285817811|gb|ADC38298.1| Lytic regulatory protein [Staphylococcus aureus 04-02981]
gi|294968104|gb|EFG44131.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8819]
gi|297177077|gb|EFH36332.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A8796]
gi|312830499|emb|CBX35341.1| lytic regulatory protein truncated with Tn554 [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315128504|gb|EFT84510.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|329726356|gb|EGG62824.1| putative membrane protein [Staphylococcus aureus subsp. aureus
21172]
Length = 363
Score = 39.5 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ + +V+ + L+ I + V + + +
Sbjct: 165 IGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 276 IILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKD 312
>gi|258445264|ref|ZP_05693456.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A6300]
gi|257855925|gb|EEV78848.1| lytic regulatory protein with Tn554 [Staphylococcus aureus A6300]
Length = 363
Score = 39.1 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ + +V+ + L+ I + V + + +
Sbjct: 165 IGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 276 IILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKD 312
>gi|51988448|gb|AAM21190.2| cytochrome b [Microstomum lineare]
Length = 234
Score = 39.1 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
S++ F + +++LL FF + + + E HI L
Sbjct: 84 SKDIVGFFLMFIFVLWLLTFFPYLFCDAANFMEASFS-------ETPEHIKPEWYFLPFY 136
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
A ++ + S +I L +++ +++ GI I + +
Sbjct: 137 AILRAFATKSSGVLALVFSVVILIFFFLFVSNNNFI---INIWLGIVVILGVIGGNAVEE 193
Query: 151 SFVKIILVGTIITISLTENYFTM 173
F+ + +GT S+ +
Sbjct: 194 PFISLGKLGTFFYFSILIFFMIF 216
>gi|21283800|ref|NP_646888.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MW2]
gi|49486940|ref|YP_044161.1| hypothetical protein SAS2050 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253731015|ref|ZP_04865180.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297210031|ref|ZP_06926425.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300910395|ref|ZP_07127847.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|21205242|dbj|BAB95936.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MW2]
gi|49245383|emb|CAG43858.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253725254|gb|EES93983.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296885335|gb|EFH24274.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300888237|gb|EFK83428.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
TCH70]
Length = 363
Score = 39.1 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 18/218 (8%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
+ + +T S+ +++ ++ + I + V + + +
Sbjct: 165 IGIAITTQSIIIIVVLLIKAIITWLLLIPVFNFMTSFVEST----------NDKVKTHLA 214
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LI 197
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 215 NGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVM 274
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 275 TIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|297589785|ref|ZP_06948425.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8]
gi|297576913|gb|EFH95627.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8]
Length = 363
Score = 39.1 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
V + +V+ + L+ I + V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V +I
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVIT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ V+ +G + K++K ++K K
Sbjct: 276 IILFVVIHAVILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|49484371|ref|YP_041595.1| hypothetical protein SAR2235 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257426287|ref|ZP_05602702.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428945|ref|ZP_05605339.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431555|ref|ZP_05607928.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257434263|ref|ZP_05610613.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257437176|ref|ZP_05613216.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876]
gi|282904817|ref|ZP_06312691.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160]
gi|282906493|ref|ZP_06314344.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282911713|ref|ZP_06319512.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914997|ref|ZP_06322777.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899]
gi|282920326|ref|ZP_06328050.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp.
aureus C427]
gi|282925537|ref|ZP_06333191.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp.
aureus C101]
gi|293509064|ref|ZP_06667851.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510980|ref|ZP_06669679.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809]
gi|293547582|ref|ZP_06672257.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
M1015]
gi|295428736|ref|ZP_06821362.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|49242500|emb|CAG41216.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257270992|gb|EEV03165.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274287|gb|EEV05804.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277796|gb|EEV08466.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257280902|gb|EEV11047.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283569|gb|EEV13696.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876]
gi|282312938|gb|EFB43339.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp.
aureus C101]
gi|282316186|gb|EFB46567.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp.
aureus C427]
gi|282321200|gb|EFB51531.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899]
gi|282324478|gb|EFB54791.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282330443|gb|EFB59961.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282594850|gb|EFB99827.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160]
gi|290919702|gb|EFD96775.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291094768|gb|EFE25040.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466265|gb|EFF08792.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809]
gi|295127406|gb|EFG57046.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|312437434|gb|ADQ76505.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193318|gb|EFU23716.1| hypothetical protein CGSSa00_02376 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 363
Score = 39.1 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
V + +V+ + L+ I + V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V +I
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVIT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ V+ +G + K++K ++K K
Sbjct: 276 IILFVVIHAVILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|320544640|ref|NP_995644.2| CG33296 [Drosophila melanogaster]
gi|318068336|gb|AAS64652.2| CG33296 [Drosophila melanogaster]
Length = 585
Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 21/196 (10%), Positives = 54/196 (27%), Gaps = 19/196 (9%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ + +L + ++ F F PG + + + + +
Sbjct: 229 MVITTMVLVVVCFVRFLFLPGSHKLLWMYITPNTKDFSEGIYSTFIMALQAFGAGWGSVI 288
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
+ S++I + + + G+ ++ +
Sbjct: 289 ALSSFNGFKTDIMSYSWIISFGQIF-----------IYIMFGLVSF--------MLEQYY 329
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
K I + + + + N F +L++ L + + +
Sbjct: 330 KDISDTIVFHRIMNFWVLFLSSASALNTLGWPNLWTFIYYSMLLLASLTVIATQLFTVLQ 389
Query: 214 SYHQWYSKLKMSKQEI 229
S + KLK KQE+
Sbjct: 390 SLFDEFEKLKERKQEV 405
>gi|213024081|ref|ZP_03338528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 50
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 337 VFYKAVAQLIYKIYHKK 353
Y AVA+++ ++ K
Sbjct: 2 QLYAAVAEVLAWVWQLK 18
>gi|87162043|ref|YP_494746.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196053|ref|YP_500867.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151222263|ref|YP_001333085.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161510354|ref|YP_001576013.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141063|ref|ZP_03565556.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|258452423|ref|ZP_05700432.1| lytic regulatory protein [Staphylococcus aureus A5948]
gi|282925606|ref|ZP_06333257.1| lytic regulatory protein [Staphylococcus aureus A9765]
gi|284025181|ref|ZP_06379579.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 132]
gi|294850118|ref|ZP_06790855.1| lytic regulatory protein [Staphylococcus aureus A9754]
gi|304379330|ref|ZP_07362068.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|87128017|gb|ABD22531.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203611|gb|ABD31421.1| lytic regulatory protein, putative [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|150375063|dbj|BAF68323.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160369163|gb|ABX30134.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859898|gb|EEV82737.1| lytic regulatory protein [Staphylococcus aureus A5948]
gi|269941746|emb|CBI50153.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592441|gb|EFB97454.1| lytic regulatory protein [Staphylococcus aureus A9765]
gi|294823066|gb|EFG39498.1| lytic regulatory protein [Staphylococcus aureus A9754]
gi|302752027|gb|ADL66204.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304342089|gb|EFM07990.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315196105|gb|EFU26463.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
CGS01]
gi|320141711|gb|EFW33545.1| hypothetical protein HMPREF9528_00020 [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143600|gb|EFW35379.1| hypothetical protein HMPREF9529_00974 [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329314832|gb|AEB89245.1| Lytic regulatory protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329724017|gb|EGG60541.1| putative membrane protein [Staphylococcus aureus subsp. aureus
21189]
gi|329729267|gb|EGG65675.1| putative membrane protein [Staphylococcus aureus subsp. aureus
21193]
Length = 363
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ + +V+ + L+ I + V + + +
Sbjct: 165 IGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 276 IILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|253733019|ref|ZP_04867184.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|253729011|gb|EES97740.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
TCH130]
Length = 363
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ + +V+ + L+ I + V + + +
Sbjct: 165 IGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 276 IILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|302386313|ref|YP_003822135.1| signal transduction protein with a C-terminal ATPase domain
[Clostridium saccharolyticum WM1]
gi|302196941|gb|ADL04512.1| signal transduction protein with a C-terminal ATPase domain
[Clostridium saccharolyticum WM1]
Length = 437
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 23/195 (11%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
AS F + L ++ + FF + S++ L L + T L I + + + A
Sbjct: 52 ASTFITFLGIILLIYFFTNNQYLSLSCYLFGYLYTITFNYLFM--WIAGFIFKMDMEALL 109
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
L+ F + H K++++ + + + +K+
Sbjct: 110 THHLLLVTFSCVYCMFCGTTTKLIGYYFH-----KKLNIAKYLTNNH-------LLKAIF 157
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
+ + I +F Y + +++ L L
Sbjct: 158 IDLFLLVFFYIF---------NFSYGERLGYNYGVIAINGIIFLLLFLITVFLMYSVYKV 208
Query: 214 SYHQWYSKLKMSKQE 228
+ + K +M++ E
Sbjct: 209 TMGEQAYKHRMAQFE 223
>gi|257898925|ref|ZP_05678578.1| PTS system protein [Enterococcus faecium Com15]
gi|257836837|gb|EEV61911.1| PTS system protein [Enterococcus faecium Com15]
Length = 457
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 15/227 (6%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLH------------VLLASATQRKLEDISHI 80
+ + +L L+ L+FF ++ + +L S + + + HI
Sbjct: 222 DTFGGAMMLGFLVPFLWFFGVHGSTLVGGIMGPILQANSLQNTTILNSGKELTVANGGHI 281
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
V + + M + Q + L + P+F ++
Sbjct: 282 VTQQFLDQFMTITGAGMTIGMVMFMVTFARSAQFKQLGRL-ALLPAFFNINEPILFATPV 340
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
+N L+ +I G I SL + + + + F V +L
Sbjct: 341 VMNPLMALPFILTPMIS-GMITYFSLYTGLVPLFTAVQVPWTTPPIISGFLVGGWRAAVL 399
Query: 201 -LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ + + + + +Q + + K
Sbjct: 400 QAVVLIIGFFIYLPFVRKVDALNYLQEQGESMDQIEKDLADETKGHV 446
>gi|256823268|ref|YP_003147231.1| Na+/solute symporter [Kangiella koreensis DSM 16069]
gi|256796807|gb|ACV27463.1| Na+/solute symporter [Kangiella koreensis DSM 16069]
Length = 473
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 15/181 (8%), Positives = 52/181 (28%), Gaps = 1/181 (0%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
++ +S+L + FF + DL + A + + + T ++ + +
Sbjct: 8 ITMAASLLVAFGVIWIFFGWWLGRKNKDLDDFML-AGRNVGFAFASATAMATWITSNTTL 66
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
+ F ++G+ Y + + ++ + K + + +
Sbjct: 67 VAPQLTYQFGIWGMVGYSMAALGLILFAPMAKRIKELMPQGYTCGDFIRVRYGKPAWIIF 126
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
++ + ++ + + + S + + LL +
Sbjct: 127 LVVSFCYALGWLVSLGMAGGVLLSTLSGLSYHLGMTAILIICVGYTLLGGLRAVIATDYV 186
Query: 214 S 214
Sbjct: 187 Q 187
>gi|254468415|ref|ZP_05081821.1| cytochrome B subunit of cytochrome bc1 [beta proteobacterium KB13]
gi|207087225|gb|EDZ64508.1| cytochrome B subunit of cytochrome bc1 [beta proteobacterium KB13]
Length = 427
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 18/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
++ + L ++FF V L +HI + +
Sbjct: 247 KDLIGLTVFLIVFASIIFFMP----EVGGYFLEHNNFVPADPLVTPAHIAPVWYFTPFYS 302
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE-GIKRIYSINNLVNFMK 150
+P +L G+ + + + + P + +++ K ++ F+
Sbjct: 303 ILRAVPPILNSQFPGVAAMGAAVLILF----LVPWLDKSNVKSIRYKGSLYKKWIIAFVI 358
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
SF+ + +GT+ + + + + + + F + +++
Sbjct: 359 SFLLLGYLGTVPSNVWGQMPNFIPLLGGLDWATFVARIFTVIYFAFFILM 408
>gi|332142425|ref|YP_004428163.1| cell division protein FtsW [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552447|gb|AEA99165.1| cell division protein FtsW [Alteromonas macleodii str. 'Deep
ecotype']
Length = 470
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 41/135 (30%), Gaps = 6/135 (4%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ + A I LLF ++ + + V + + + + + + + L A
Sbjct: 179 DLGTVVVMFATTIGLLFLAGARLWQFFALVFVGILAVVALIVFEEYRLKRVTSFLDPWAD 238
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
L S + + S +++ + + L +
Sbjct: 239 PFGAGYQL------TQSLMAYGRGNWFGQGLGNSLQKLEFLPEAHTDFVMAILAEELGFV 292
Query: 153 VKIILVGTIITISLT 167
+ ++G I+ + L
Sbjct: 293 GVVAVLGLILWMVLR 307
>gi|300712179|ref|YP_003737993.1| aldo/keto reductase [Halalkalicoccus jeotgali B3]
gi|299125862|gb|ADJ16201.1| aldo/keto reductase [Halalkalicoccus jeotgali B3]
Length = 274
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL-IYKI 349
+ +R+ A EH++P+ LAR VP I + AQ+ + +
Sbjct: 172 ETLREYADEHDLPLVAYSPLARGEVFDVPELEEIAEKHDASAAQVSLAWL 221
>gi|88800200|ref|ZP_01115768.1| probable two component sensor histidine kinase transcription
regulator protein [Reinekea sp. MED297]
gi|88777046|gb|EAR08253.1| probable two component sensor histidine kinase transcription
regulator protein [Reinekea sp. MED297]
Length = 633
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 18/193 (9%), Positives = 58/193 (30%), Gaps = 19/193 (9%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
+L I F+ + + +L + + ++ +L H+ S
Sbjct: 196 TAVMLLTAFIIFWFWLARPKDKIYGLFAAMLF------IWAVHNLNLMLVHIPFSV---- 245
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
+ + + + + N N+V + ++R + + F+
Sbjct: 246 --QIWESLTMATLGWTVVLMIYFNHNYVG------NPVILVERAALLFAVAGLGIFFLPD 297
Query: 156 ILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
+ I + +++ + + + +H ++++ + + + DI
Sbjct: 298 LNQVLQIGYLIWDSFLIIFGSYALCHLGYVFWHRRDLDVYLMMLAGIPMLIFGLHDILIV 357
Query: 215 YHQWYSKLKMSKQ 227
H + Q
Sbjct: 358 NHLRDRSEGLIIQ 370
>gi|296132919|ref|YP_003640166.1| hypothetical protein TherJR_1408 [Thermincola sp. JR]
gi|296031497|gb|ADG82265.1| hypothetical protein TherJR_1408 [Thermincola potens JR]
Length = 494
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ--RKLEDISHIVFLLTHLSLSASR 93
+LA + FF+ + L V+ + + D I+ LL ++
Sbjct: 116 SALLMLAGAFFTYFFWGFRPHMFLHLLFVIFFYVMECFYRNRDYLWILPLLMIAWVNLHG 175
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
I G ++ ++ I ++P L P KR L++F+ + +
Sbjct: 176 SFIMGPVIIGLYLISGIFAIQLPTLVNRLWTP---------AQKRKLLAVLLMSFLATLI 226
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
+ T N +++ I+ + +F V ++ + L
Sbjct: 227 NPNSYHMLFYPLQTVNSDFIVNQINEWASPDFHEPYFMVYLGYVLAGFALMGLG 280
>gi|4097757|gb|AAD00167.1| lytic regulatory protein [Staphylococcus aureus]
Length = 370
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 80/217 (36%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 116 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 171
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ + +V+ + L+ I + V + + +
Sbjct: 172 IGIAITTQSIIIIVVLLIKAIITWL-----LLIPIFNFMTSFV----ESTNDKVKTHLAN 222
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ +V ++
Sbjct: 223 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAEKFIRVYTVMT 282
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LF+ ++ +G + K++K ++K K
Sbjct: 283 IILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 319
>gi|167622553|ref|YP_001672847.1| sulfate transporter [Shewanella halifaxensis HAW-EB4]
gi|167352575|gb|ABZ75188.1| sulphate transporter [Shewanella halifaxensis HAW-EB4]
Length = 382
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 5/159 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ F ++ LI L F GI+ + A +R + V ++ S
Sbjct: 24 DLGTFLPLVLGLIALNHFSPQGIFMGFGLFALFTAFYYRRPIPVQPMKVIAALVIAQGLS 83
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
++ + M + + P+ GI+ + + +
Sbjct: 84 PGMLQASGILMGVILLVLAYSGAIKWMAKQLSPAIS-----IGIQLAIGLQLIWMGGQMM 138
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
+ +G + I+L + F + +++ L +
Sbjct: 139 NQTWYIGFVAFIALFASKFFPMRYLAMPLVLALGILWQL 177
>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
Length = 1212
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
N +A + R++A + +LA L + IP +AV ++ +
Sbjct: 228 TNEVAARARELARKFG----GNAALAELL---TKVGEHIPAEGMEAVLAVLADV 274
>gi|311113604|ref|YP_003984826.1| amino acid transporter [Rothia dentocariosa ATCC 17931]
gi|310945098|gb|ADP41392.1| amino acid transporter [Rothia dentocariosa ATCC 17931]
Length = 528
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 18/195 (9%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
A++ + + L+YLL ++ TS + L ++ ++ +L L + S
Sbjct: 280 AAVGTILTVVLLYLLISVGTLAFAGTSSEGLGLGNSDNQENIFAVLSGPVLGSLGIIMSF 339
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG------------------ 135
V+ L + S + + + P F +S +
Sbjct: 340 AVLISALASLQSTAVSPARTLLAMGYYKALGPKFASISPKYQSPSYATIASCLIATLFYV 399
Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
+ R S + L + + + ++ + +T YF + F S + F + +
Sbjct: 400 LMRFISTSVLWDTISALSLMVCLYYGVTAFACVWYFRKVAFSSGFKSFVNKFLFPLLGGI 459
Query: 196 LIMILLFIATLTVLD 210
++++ T +D
Sbjct: 460 MLLVFFIQTTYDSMD 474
>gi|82751748|ref|YP_417489.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus
RF122]
gi|82657279|emb|CAI81720.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus
RF122]
Length = 351
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 84/217 (38%), Gaps = 16/217 (7%)
Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
A +G S L S + ++ LL + +Y + S + ++ ++ Q D +H++
Sbjct: 109 AFKKGIYLKSVLIGLVSIAMIIVLSLL---TSLLYKLFSPVSEMIMNSVQSSYADSTHLI 165
Query: 82 FL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
+ +T S+ +++ ++ + I + V + + +
Sbjct: 166 GIAITTQSIIIFVVLLIKAIITWLLVIPIFNFMTSFVEST----------NDKVKTHLAN 215
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIM 198
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 216 GFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMT 275
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+LFI ++ +G + K++K ++K K
Sbjct: 276 IILFIVIHAIILMGIVQYYLKRGQKITKDKVKTADKD 312
>gi|239932117|ref|ZP_04689070.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
14672]
gi|291440487|ref|ZP_06579877.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
14672]
gi|291343382|gb|EFE70338.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
14672]
Length = 840
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 7/151 (4%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
SRE +L L TS + L+ S+ + E ++ + + +
Sbjct: 690 SREIPEEGLVLGGFTLLELSLPIMALGFTSMMFGLIISSLVKTAEKTMPLLVMFAIIQVV 749
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI------NN 144
+ + L + S+L+ + + F R+S E +
Sbjct: 750 FTGCLFT-LHGSIGVNQFSFLMPSRWAVAASGATLDFNRISPPETAGDTDPLWEHTVGAW 808
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLD 175
++ ++ G + L + ++
Sbjct: 809 AMDMGALVALGVVCGFFVARFLRRHEPEVMR 839
>gi|21674601|ref|NP_662666.1| FtsK/SpoIIIE family protein [Chlorobium tepidum TLS]
gi|34395672|sp|Q8KBK0|FTSK_CHLTE RecName: Full=DNA translocase ftsK
gi|21647800|gb|AAM73008.1| FtsK/SpoIIIE family protein [Chlorobium tepidum TLS]
Length = 804
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 32/227 (14%), Positives = 68/227 (29%), Gaps = 25/227 (11%)
Query: 40 ILACLIYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
+LA L + F Y VT + L +SA + I + L V
Sbjct: 1 MLAALFSIAAVFGFHAEDEPYIVTLPWYELFSSAAKAVAGTIHNPFGLFGARVSVFFIRV 60
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
+ L + + +L+ + + P + + L+ +
Sbjct: 61 L--LGYPSVMPLFGFLVLGWHLFRAKPLGPGL-----------FFLVYTLL-MALDLSAM 106
Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
+ + L + + A+ + ++ ++ ++D
Sbjct: 107 FGLSMLPLADLMSGATGRMMASFLSTVIGYPGAWALTAIIAAVLTFYMGRDFIVDTIAGV 166
Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262
++ KL + Q I+ E K R+K R R + + M A
Sbjct: 167 SGFFGKLLATVQAIRAER-------HRKRREKEEMRVRKKAERMAAV 206
>gi|283471364|emb|CAQ50575.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
ST398]
Length = 363
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 18/218 (8%)
Query: 22 ALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
A +GN S + ++ +I +L + +Y + S + ++ ++ Q D +H+
Sbjct: 109 AFKKGNYLKS----VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL 164
Query: 81 VFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
V + +T S+ +++ ++ + I + V + + +
Sbjct: 165 VGIAITTQSIIIIVVLLIKAIITWLLLIPVFNFMTSFVEST----------NDKVKTHLA 214
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LI 197
+ N K+F K + ++ + + + IS N S+ + +V ++
Sbjct: 215 NGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVM 274
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
I+L++ ++ +G + K++K ++K K
Sbjct: 275 TIILYVVIHAIILMGIVQYYLKRGQKITKDKVKTADKN 312
>gi|224483084|gb|ACN50369.1| cytochrome oxidase subunit I [Baculofractum insigne]
Length = 254
Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 61/208 (29%), Gaps = 19/208 (9%)
Query: 37 FSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLSASRL 94
F+ + L+ + + + D SAT + L + S L
Sbjct: 26 FAMMAIGLLGFVVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWLATMHGSKLTL 85
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGIK 137
L + + VL+ + + + ++ G
Sbjct: 86 SPSCLWSMGFVFLFTLGGLTGIVLSNSSIDITLHDTYYVVAHFHYVLSMGAVFAIMAGFV 145
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
Y + ++ ++KI + I ++LT L Y FT +L
Sbjct: 146 HWYPLFTGMSMNPLWLKIQFITMFIGVNLTFFPQHFLGLAGMPRRYSDYPDMFTSWNILS 205
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMS 225
+ ++TL+++ + S + +
Sbjct: 206 SLGAMMSTLSMMMFIMIMWESMSSNRQT 233
>gi|327288432|ref|XP_003228930.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7-like [Anolis carolinensis]
Length = 1967
Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 19/95 (20%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 347 RRELEKTINLQRIHARIGQGVPVVALIFEGGPNVVLTVLEYLQESPPVPVVVCEGTG-RA 405
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
+ ++KQ IP
Sbjct: 406 ADILAY-----------------VYKQTEEGGNIP 423
>gi|226326466|ref|ZP_03801984.1| hypothetical protein PROPEN_00314 [Proteus penneri ATCC 35198]
gi|225205065|gb|EEG87419.1| hypothetical protein PROPEN_00314 [Proteus penneri ATCC 35198]
Length = 401
Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 5/189 (2%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSL 89
S++ ++ L+ + F + L L + + +EDI+ + ++L
Sbjct: 13 SKQIFTTIFLVIVLLVVWFLAKMIFRRIAKRLLFLFTELSDEETIEDIAKKSASIVAVTL 72
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS----FKRVSLREGIKRIYSINNL 145
+ M I + + ++N+ + + F ++ R SI
Sbjct: 73 VLYINQLLPSFSTEMNIIFETVARAFIIINIASLLNNALDIFNIRHAKKAWHRNNSIKGY 132
Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
+ K V II II + ++ ++ A +++ T+ + IL+
Sbjct: 133 IEIAKIVVWIISFILIIALFTEQSPLIIISSFGAIAAVLMFVFQHTLISFVANILISNGK 192
Query: 206 LTVLDIGWS 214
+ L
Sbjct: 193 VLKLYDWIE 201
>gi|294638024|ref|ZP_06716284.1| Trk system potassium uptake protein TrkH [Edwardsiella tarda ATCC
23685]
gi|291088816|gb|EFE21377.1| Trk system potassium uptake protein TrkH [Edwardsiella tarda ATCC
23685]
Length = 481
Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 49/188 (26%), Gaps = 4/188 (2%)
Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
++ LI L+ + ++ L + + + +
Sbjct: 276 FVLIVGLILTLWLWHKHVFDFEDSLRIAFFNLINILSTTGYSLGNFDQWTPFTTVLFASV 335
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIYSINNLVNFMKSFVKII 156
LL + + + ++ + R Y+ + N + +
Sbjct: 336 MLLGGCSGSTAGGIKMFRVQIGFESLHIEVRKLIHPNAVFPRRYNNRPITN---EVSRSV 392
Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
+ + I++T +L + S + A + V + I
Sbjct: 393 IAFMMAFIAITMLIAAVLGLCGVDALSAITGAMTAMANVGPGMGPLIGPSGNFAPLPDVA 452
Query: 217 QWYSKLKM 224
+W L M
Sbjct: 453 KWALALGM 460
>gi|148373678|gb|ABQ63457.1| NADH dehydrogenase subunit 4 [Papilio xuthus]
Length = 445
Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
++ A L L+ F Y+ + ++ L +S I+ L + + L +P
Sbjct: 147 TLFASLPMLMGIFFFFNYNCLIMYFLKFFNSNFFLLY-LSMILAFLVKMPMYFVHLWLPK 205
Query: 99 L---LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI--KRIYSINNLVNFMKSFV 153
I + ++ ++ L + F++++++ G+ I + L + F
Sbjct: 206 AHVEAPVSGSMILAGIMLKLGGYGLLRIMIVFQKINMKYGLIWVVISLLGGLYISLNCFC 265
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
++ + I S+ + ++ N L + L +F +
Sbjct: 266 QVDMKSLIAYSSVAHMSLVICGIMTMNYWGYLGSYIMMIGHGLCSSGMFCLVNINYERLQ 325
Query: 214 SYHQWYSKLKMS 225
S + +K M+
Sbjct: 326 SRSLFINKGMMN 337
>gi|313678811|ref|YP_004056551.1| membrane protein [Mycoplasma bovis PG45]
gi|312950227|gb|ADR24822.1| putative membrane protein [Mycoplasma bovis PG45]
Length = 352
Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 23/217 (10%), Positives = 68/217 (31%), Gaps = 31/217 (14%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ F S + ++Y + S + + + + D + L + +
Sbjct: 28 IATFVSFILLILYFIVMASFDLAYIKVAGQAFEENPPKGFSPDYMKSMHLFWIIFKYVAS 87
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
I + M +S+ +G K+
Sbjct: 88 AGIIVSTILMF-------------------------ISVLQGYKKKNFAK------IYTW 116
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
+ + I+ +++ + ++ N I + + + ++++ IL I +
Sbjct: 117 PLTIYFIILFVNIWNSVSAIIQGRDINASGIKDFSTYILVRMILTILFTIILAVAYFVFV 176
Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
+ + ++ Q+ ++ KQ NP ++ ++I
Sbjct: 177 RKYMFIKAAYITVQKYEEAQKQLEDNPELRELVQNIQ 213
>gi|299755948|ref|XP_001828996.2| ammonium transporter [Coprinopsis cinerea okayama7#130]
gi|298411453|gb|EAU92631.2| ammonium transporter [Coprinopsis cinerea okayama7#130]
Length = 496
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 25/215 (11%), Positives = 63/215 (29%), Gaps = 33/215 (15%)
Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV--------------FLLTHL 87
+I+ FF+ + T+ + + + + L ++ + F +
Sbjct: 62 GVVIFQWFFWGYSLSYSTTATNGFIGNLSNIGLRNVGAQLSPGSPLVPDILYSFFQMEFA 121
Query: 88 SLSASRLV---------IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK- 137
++A+ L+ +PG++ ++ Y V + N + + G
Sbjct: 122 CVTAAILMGGLAERGRVLPGMVFLFVWMTLVYCPLACWVWSGNGWAFKWGVLDFAGGGPV 181
Query: 138 --------RIYSINNLVNFMKSFVKI-ILVGTIITISLTENYFTMLDFISANPHSILYHA 188
+S + + +++ + +F L F + A
Sbjct: 182 EIGSGVGGLAFSWVLGRRTERQLLNFRPHNVSLVGLGTAMLWFGWLGFNGGSAFGANLRA 241
Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
F + +I + LD + H L
Sbjct: 242 VFAIWNTMIAGAMAGLVWCALDYRYERHWSMVGLC 276
>gi|152973156|ref|YP_001338302.1| putative sulfate transporter [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150958005|gb|ABR80035.1| putative sulfate transporter [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 489
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 31/227 (13%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS-------------------DLHVL 65
+GNA +S + F+ L+ L + SP I V S L
Sbjct: 145 QGNAAVS--VTAFAVAAGGLLVLWLWGSPLIRRVKSLRWIPGPLIAVLLGCVTTLLLTHF 202
Query: 66 ----LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
LA+ + L + LL L A ++++ + + +L+
Sbjct: 203 APQQLAALPRITLPAFGSLGDLLGELESPA-WSAWRNPSVWVVAVTLALVASLETLLSQE 261
Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII----TISLTENYFTMLDFI 177
+K + + R + N + + + + +I + FI
Sbjct: 262 ALK-KLRPQNPPPSPNREMVAQGVGNLLSGVLGAMPITAVIVRSSVNVSNGAQSKLSIFI 320
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
I F + ++ + L L + + + +
Sbjct: 321 HGLLLLICGLWFSGLLTLIPLASLAAVLLYTGYKLATPRLFIEQFRQ 367
>gi|157111939|ref|XP_001651758.1| hypothetical protein AaeL_AAEL006002 [Aedes aegypti]
gi|108878229|gb|EAT42454.1| conserved hypothetical protein [Aedes aegypti]
Length = 488
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 12/210 (5%)
Query: 26 GNAPISREASLF-----SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
G + S F + C+ Y + F + T ++ I
Sbjct: 269 GEVAKLSDISTFKVTFWMVTVICVAYYVAIFPFIALGKVFFMRKF--GFTPEDANTVNSI 326
Query: 81 VFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
V+++ ++ L++ G + +F + +L P + G+
Sbjct: 327 VYIVAGVASPIFGLIVDRTGRNVLWVFLSIVVTMVAHGLLAFTFYNPYIAMI--TMGLAY 384
Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
++L + V +GT I + L IS I+ + + ++ +
Sbjct: 385 SMLASSLWPLVALIVPEYQLGTAYGICQSVQNLG-LAVISMFSGLIVDEGGYFMLEIFFI 443
Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
L I+ + + I L MS E
Sbjct: 444 GWLVISLIATIVIWLYNSNNNGVLNMSPSE 473
>gi|301613736|ref|XP_002936362.1| PREDICTED: trace amine-associated receptor 4-like [Xenopus
(Silurana) tropicalis]
Length = 355
Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 29 PIS-REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86
P S +E S FS++ LLF I++ +L V+++ + ++L+ ++++ + L
Sbjct: 35 PKSNKELSSFSAL------LLFMLGAIIFTTVGNLMVIISVSHFKQLQTPTNVLVMSLAI 88
Query: 87 LSLSASRLVIPGLLLFMMFGIG 108
LV+P ++ +
Sbjct: 89 ADFLLGLLVMPYSMVRSLTSCW 110
>gi|212637287|ref|YP_002313812.1| transporter [Shewanella piezotolerans WP3]
gi|212558771|gb|ACJ31225.1| Transporter, putative [Shewanella piezotolerans WP3]
Length = 391
Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 5/148 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ F ++ LI L F GI+ + A +R + V ++ +
Sbjct: 33 DLGTFLPLVLGLIALNHFSPQGIFMGFGLFALFTAFFYRRPIPIQPMKVITALVIAQGLT 92
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
++ + M + + P+ GI+ I + +
Sbjct: 93 PGMLQASGMMMGIILLVLAYSGAIKWMAKQLSPAIS-----IGIQLAIGIQLIWMGGQMM 147
Query: 153 VKIILVGTIITISLTENYFTMLDFISAN 180
+ L+G I L + F L +++
Sbjct: 148 SQTWLIGLIAFGLLFGSKFVPLRYLAMP 175
>gi|206895371|ref|YP_002247110.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
gi|206737988|gb|ACI17066.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
Length = 406
Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 285 ENDAPVLVAK----GQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
+ +AP + ++ A +R A +PI E+P LAR
Sbjct: 212 KAEAPKISEYLCPACKDHYAHVIRA-AKLFGVPIVEDPQLAR 252
>gi|56461575|ref|YP_156856.1| DNA adenine methylase [Idiomarina loihiensis L2TR]
gi|56180585|gb|AAV83307.1| DNA adenine methylase [Idiomarina loihiensis L2TR]
Length = 290
Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 296 QNLIAKKMRKIAYEHNIPIF---EEPSLARSLFKQVPI 330
Q+ +A++ ++A + +IP+ + L R+L+K I
Sbjct: 206 QDELARRAVQVAKKRHIPVLISNHDTDLTRALYKHADI 243
>gi|163751191|ref|ZP_02158420.1| transporter, putative [Shewanella benthica KT99]
gi|161329020|gb|EDQ00093.1| transporter, putative [Shewanella benthica KT99]
Length = 385
Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 47/163 (28%), Gaps = 5/163 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ F ++ LI L F GI+ + A +R + V ++ +
Sbjct: 24 DLGTFLPLVLGLIALNHFSPQGIFMGFGVFALFTAFYYRRPIPVQPMKVIAALVIAQGLT 83
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
++ + M + + P+ GI+ + + +
Sbjct: 84 PGMLQASGMMMGIILLLLAFSGAISWMAKQLSPAIS-----IGIQLAIGLQLIWMGGQMM 138
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
+ +G + L + F + +++ + +
Sbjct: 139 GETWFIGITAFVVLFASRFLPMRYLAMPLVLASGMLWQYTSGM 181
>gi|332991939|gb|AEF01994.1| cell division protein FtsW [Alteromonas sp. SN2]
Length = 514
Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 40/135 (29%), Gaps = 6/135 (4%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ + A I LLF ++ + + + + + + + + + L A
Sbjct: 196 DLGTVVVMFATTIGLLFLAGARLWQFFALVFAGVLAVVALIVFEEYRMKRVTSFLDPWAD 255
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
L S + + S +++ + + L +
Sbjct: 256 PFGAGYQL------TQSLMAYGRGNWFGQGLGNSLQKLEFLPEAHTDFVMAILAEELGFV 309
Query: 153 VKIILVGTIITISLT 167
+ ++G I+ + +
Sbjct: 310 GVLAVLGLILWMVVR 324
>gi|168703522|ref|ZP_02735799.1| sodium/hydrogen exchanger family protein [Gemmata obscuriglobus UQM
2246]
Length = 884
Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 27 NAPI--SREASLFSSI-----LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
SRE + + +A Y LF S + + + + V + + + D
Sbjct: 218 QVARLRSRELFTLTVMVFSVAIAAGAYALFGASMALGAFLAGMMVARSPVSHQAAADALP 277
Query: 80 IVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPV 117
+ L + ++ P LLL + + L + V
Sbjct: 278 LRDAFAVLFFVSVGMLFDPALLLRAPLMMLAALFVILLV 316
>gi|146161256|ref|XP_976982.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila]
gi|146146788|gb|EAR86574.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila SB210]
Length = 1591
Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
++ CLI+L FFF+P I L+ +L+ ++++I +IV + ++ +
Sbjct: 1126 MVTCLIFLYFFFAPSI------LNRILSYMACAQIDEIQYIVGMSNLTCFNSEHKLYLFT 1179
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNL--VNFMKSFVKI 155
LF + + + I L + R+ + G + F+K F+K
Sbjct: 1180 FLFPVCLLWALFIPIYFFFKLKSNREYLDQIRMKFQFGFIYQEYKRSCYYWEFVKIFLKF 1239
Query: 156 ILVGTIITISLTENYFTML 174
++ T++ + +L
Sbjct: 1240 TIISTLMIFYEQQTIKIIL 1258
>gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
weihenstephanensis KBAB4]
gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
weihenstephanensis KBAB4]
Length = 801
Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 14/207 (6%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
S+FS +++ I++ F ++ A ++ F ++
Sbjct: 10 LSIFSLLVSAAIFIQVFTIHSRRYFEKFYGGII--AVTLMFFSFPYMGFSYDLRAVPLIL 67
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
I + + S +I RI + P + + + L K++
Sbjct: 68 SFIYFGRIAGWITLISIIIMRIFYIGGYWEPP----------VMAYFGMGILFTIFKTYF 117
Query: 154 KII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
K + + S+ ++ F +LI + L A + +
Sbjct: 118 KSLHPFKSAPLYFSVFVGMKWLVGVFFITTVLYTPGLVFIALGLLIGVFLMEAYQRLYYL 177
Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYG 238
+ KLK SKQE+KD + + G
Sbjct: 178 TQDLSKMNQKLKKSKQELKDTVHELQG 204
>gi|303325832|ref|ZP_07356275.1| rod shape-determining protein RodA [Desulfovibrio sp. 3_1_syn3]
gi|302863748|gb|EFL86679.1| rod shape-determining protein RodA [Desulfovibrio sp. 3_1_syn3]
Length = 368
Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 15/202 (7%)
Query: 39 SILACLIYLLFFFSPGIYSVTS-DLHVLLASATQRKLEDISHI-------------VFLL 84
+LAC+ L F +YS + L LA + + + I + L
Sbjct: 12 GLLACMFLLYFLGVGNLYSASGTRLEDGLAFSGFYQRQLIWGVCGLACMLLAMSFDYRQL 71
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSIN 143
+L+ + + L+L + G Y +R L ++P ++++ R+ + +
Sbjct: 72 RNLAWPFFLISLALLILVPVAGKTVYGAKRWLSLGFMSIQPSELAKLAVLVLAARLLARD 131
Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
K F ++ VG I + + + VL LL +
Sbjct: 132 GRPLGWKDFSAVLAVGLIPAALIVTQPDLGTTLMILLILGGMILFHGLKGYVLKTCLLAV 191
Query: 204 ATLTVLDIGWSYHQWYSKLKMS 225
H + + ++
Sbjct: 192 PCAAAFMWFVGMHDYQRQRILT 213
>gi|158287595|ref|XP_309588.4| putative GPCR class a orphan receptor 4 (AGAP004034-PA) [Anopheles
gambiae str. PEST]
gi|157019497|gb|EAA05356.4| putative GPCR class a orphan receptor 4 (AGAP004034-PA) [Anopheles
gambiae str. PEST]
Length = 494
Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 25/207 (12%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVI 96
+L L LL + +V + V+L+ T R+L +++ ++ L L ++
Sbjct: 67 LVLVALFCLL-----IVITVVGNTLVILSVLTTRRLRTVTNCFVMSLAVADWLVGIFVMP 121
Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL-------REGIKRIYSINNLVNFM 149
P +++F++ I ++L+ + + +SL + R + +
Sbjct: 122 PAVIVFVVESWQLGWILCDIWISLDVLLCTASILSLCAISVDRYLAVTRPLTYSKRRRSK 181
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH-------AFFTVRKVLIMILLF 202
+ + ++++ + ++L +L + + ++ + + V + +
Sbjct: 182 R--LALLMIFVVWLVALAITCPPILGWYDQDRRTLQSYECHYNQNKGYVVFSAMGSFFIP 239
Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
+ + + + +M+K E+
Sbjct: 240 MTVMLYVYSKICCVLTSRQNRMTKTEV 266
>gi|293602586|ref|ZP_06685030.1| cytochrome c assembly protein [Achromobacter piechaudii ATCC 43553]
gi|292819013|gb|EFF78050.1| cytochrome c assembly protein [Achromobacter piechaudii ATCC 43553]
Length = 455
Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 26 GNAPISR--EASLFSSILACLIYLLF--------FFSPGIYSVTSDLHVLLASATQRKLE 75
G+ P+S E + S++ L YL + + VTS + LL + R
Sbjct: 189 GHIPVSNLYEVFVLFSLITALFYLYYERKYATRALGGFVLLVVTSAVVFLLWYSFTRDAG 248
Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
I +V L + +L +P + + ++ ++ + S+ +++
Sbjct: 249 QIQPLVPALKSWWM---KLHVPANFIGYGTFSLAAMVGFAYLIKQHGQTTSWLKLAPLFV 305
Query: 136 IKRIYSINNLVN-----FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
+ + +V + + I+ L S + +
Sbjct: 306 LGVLLCAEPMVFRTDGLSATWMLYFGVGAVIVGAILLGRRRIAAALPSLEVLDDIMYRAI 365
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQW 218
+ + + L D +Y QW
Sbjct: 366 AIGFAFFTVATILGALWAADAWGAYWQW 393
>gi|212704042|ref|ZP_03312170.1| hypothetical protein DESPIG_02095 [Desulfovibrio piger ATCC 29098]
gi|212672547|gb|EEB33030.1| hypothetical protein DESPIG_02095 [Desulfovibrio piger ATCC 29098]
Length = 368
Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 15/202 (7%)
Query: 39 SILACLIYLLFFFSPGIYSVTS-------DLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
++LAC++ L F +YS + L + ++
Sbjct: 12 ALLACMLLLYFTGVANLYSASGTRVETGFAFESFYQRQLIWGLCGLGCMLLATLFDYRQL 71
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK--------RIYSIN 143
L P LLF++ + LI + + E IK R+ + +
Sbjct: 72 RNLAWPAYLLFLVLLMLVPLIGSTFYGAKRWISFGLFTIQPSEPIKIAVLILVARLLARD 131
Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
+ K+F ++ VG + + + + + + R VL LL +
Sbjct: 132 SQPLGWKNFFSVLAVGLVPVVFILKQPDLGTAMMVLLIMGGMILFHGLRRYVLGTCLLAV 191
Query: 204 ATLTVLDIGWSYHQWYSKLKMS 225
+ L H + + ++
Sbjct: 192 PGVAALMWCVLMHDYQKQRVLT 213
>gi|323359651|ref|YP_004226047.1| permease of the major facilitator superfamily [Microbacterium
testaceum StLB037]
gi|323276022|dbj|BAJ76167.1| permease of the major facilitator superfamily [Microbacterium
testaceum StLB037]
Length = 512
Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 16/198 (8%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL------EDISHIVFLLTHL 87
A ++++A + F + + S S L + QR+ S L +
Sbjct: 107 APTAAALIAGRALMGVFGAMLMPSTLSLLRSIFRDRDQRRFAIAIWASGFSAGAALGPIV 166
Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI----- 142
G + M + L+ P P+ R + + ++
Sbjct: 167 GGFLLEHFSWGSVFLMAVPVLVPLLILAPFFVPESRDPAPGRFDPLSVLLSLATMVPIVY 226
Query: 143 ---NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
V+ S ++ V I+ L L + F +L+ +
Sbjct: 227 GIKKLAVDGPMSLAPVLFVIGIVFGWLFVRRQRRLTTPMLDMTLFQRGTFS--GAILVNL 284
Query: 200 LLFIATLTVLDIGWSYHQ 217
L + + L + Q
Sbjct: 285 LSVVGLVGFLYFVAQHLQ 302
>gi|302561405|ref|ZP_07313747.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
Tu4000]
gi|302479023|gb|EFL42116.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
Tu4000]
Length = 844
Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 7/151 (4%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
SRE + L TS + L+ S+ + E ++ + + +
Sbjct: 694 SREIPEEGLVFGGFTLLELSVPIMALGFTSMMFGLIISSLVKTAEKTMPLLVMFAIIQVV 753
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI------NN 144
+ + L + S+L+ + + F R+S E +
Sbjct: 754 FTGCLF-ALHGSIGVNQFSFLMPSRWAVAASGATLDFNRISPPETAGDTDPLWEHTAGAW 812
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLD 175
++ V ++ G + L + ++
Sbjct: 813 AMDMGALIVLGVICGFFVARFLRRHEPEVMR 843
>gi|90580545|ref|ZP_01236350.1| virulence factor MviN [Vibrio angustum S14]
gi|90438203|gb|EAS63389.1| virulence factor MviN [Photobacterium angustum S14]
Length = 505
Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 20/184 (10%), Positives = 54/184 (29%), Gaps = 7/184 (3%)
Query: 26 GNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
G+ +RE + + L ++ L+ F + L F L
Sbjct: 63 GDVDRTRELIAKAAGTLGGIVTLVTLFGVLGSGAVTALF-GFGWFWDWLHGGADAEKFEL 121
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
L ++ P L + ++ + ++ P F +++ + +
Sbjct: 122 ASL---LLKITFPYLWFITFVALSGAILNTLGKFAISSFTPVF--LNISIIGCAWFVSPH 176
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L + VG ++ + ++ +RK+++ L ++
Sbjct: 177 LAQPEIGLAIGVFVGGLVQFGFQLPFLYREGYLVRPKWGWNDPGVTKIRKLMLPALFGVS 236
Query: 205 TLTV 208
+
Sbjct: 237 VTQI 240
>gi|72171120|ref|XP_798644.1| PREDICTED: similar to 240K protein of rod photoreceptor cng-channel
[Strongylocentrotus purpuratus]
gi|115938890|ref|XP_001185988.1| PREDICTED: similar to 240K protein of rod photoreceptor cng-channel
[Strongylocentrotus purpuratus]
Length = 762
Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 61/173 (35%), Gaps = 4/173 (2%)
Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
++L + + + + + + L A Q K ++ +++ + LT L +I LL
Sbjct: 342 GGLWLFWLSVVTMAFLYNAIVIFLRGAFQEKYQNKNNLGYWLTCDYLCDFIYIIDMLLFR 401
Query: 103 MMFGIGSYLIQRIPVLNLNHVK---PSFKRVSLREGIKRIYSINNLVNFMKSFV-KIILV 158
+ +L + S +V + R++ ++ + F + F K
Sbjct: 402 ARLMFFQAGQGIFDLFSLLPLDLFYFSLNKVEPLLRLPRLFKFHSYLEFSQKFENKSKSA 461
Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
I + M+ + ++IL+ + + ++ +D+
Sbjct: 462 HGIRIFRMVMYLLYMIHLNTCLYYAILFWEGIRQDDIAMANDYWVYLDPKVDV 514
>gi|312221769|emb|CBY01709.1| hypothetical protein [Leptosphaeria maculans]
Length = 462
Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 59/208 (28%), Gaps = 22/208 (10%)
Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
G + + + I+ + G ++ S + + + L+D+ + ++
Sbjct: 87 GQVAR--DITHITPIVTGV--------SGGIALLSVIFRIGLAGRNIALDDVFAMAAMIA 136
Query: 86 HLSLSASRLVIPGLLLFM-MFGIGSYLIQRIPVLNLNH-----VKPSFKRVSLREGIKRI 139
L + + ++ I I RI +F ++S + RI
Sbjct: 137 ALPMGILEFFMAADGFGKDIWTIPGEQIYRIVQFTWLTEIFYFPALAFTKLSFLFFLLRI 196
Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH------SILYHAFFTVR 193
+ + + + T + +I + I +H F V
Sbjct: 197 FPAQEFRRIVYMLIGASAACGTAFTLVCLFNCTPISYIWESWDGEHEGKCINFHIFAWVN 256
Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSK 221
+ +IL I + K
Sbjct: 257 AGINIILDVIIIAAPIPQLLRLSLSTKK 284
>gi|197284471|ref|YP_002150343.1| cytochrome D ubiquinol oxidase subunit II [Proteus mirabilis
HI4320]
gi|227356649|ref|ZP_03841035.1| cytochrome D ubiquinol oxidase subunit II [Proteus mirabilis ATCC
29906]
gi|194681958|emb|CAR41377.1| cytochrome D ubiquinol oxidase subunit II [Proteus mirabilis
HI4320]
gi|227163157|gb|EEI48088.1| cytochrome D ubiquinol oxidase subunit II [Proteus mirabilis ATCC
29906]
Length = 385
Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats.
Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 14/198 (7%)
Query: 39 SILACLIYLLFFFSPGIYSVT-------------SDLHVLLASATQRKLEDISHIVFLLT 85
+LA +I L+ + G + + L + L + I +
Sbjct: 175 GLLAGVISLMMIVAQGASYLQMRTTGELHERTRKATYITSLITFIAFALAGVWLIYGIDG 234
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-HVKPSFKRVSLREGIKRIYSINN 144
+ SA P L + + P+ +S + +
Sbjct: 235 FIITSAVDTAGPSSPLLKTVSHEAGAWMTNYNNYPILWILPALGLLSPLLAVVATKANKG 294
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
F+ + + I V ++L F + + +V+ ++ +
Sbjct: 295 AWAFLFTSLTIACVILTFGVTLFPFIMPSSTFPDVSLTIWDATSSLFTLQVMTVVAIIFV 354
Query: 205 TLTVLDIGWSYHQWYSKL 222
+ +L W Y + + +L
Sbjct: 355 PIVLLYTIWCYWKMHGRL 372
>gi|67925156|ref|ZP_00518528.1| O-antigen polymerase [Crocosphaera watsonii WH 8501]
gi|67853003|gb|EAM48390.1| O-antigen polymerase [Crocosphaera watsonii WH 8501]
Length = 451
Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 19/180 (10%)
Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASA-TQRKLEDISHIVFLLTHLSLSASRLV 95
+ +L + L + P L A ++ D ++ L T A ++
Sbjct: 252 ATVLLIMFLVLWAAWIPIYQDFMRQLVPSYFWARLTDEMYDDRYVTALRTTQWGVAWNMM 311
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK--SFV 153
+ +L + + Q +++++ G + L + +
Sbjct: 312 LERPILGWGLRNFTPVYQ--------------EKMNVWMGHPHNLFLMLLAEIGAIGTLL 357
Query: 154 KIILVGTIITISLTENYFTMLDFI--SANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
LVGTII + +F A+P F + + I+ + +++ D+
Sbjct: 358 FSGLVGTIIAKIVMLMTTIKNNFSDKFAHPEEDCLLLFTYLVAFSLCIIFNLLDVSIFDL 417
>gi|153855295|ref|ZP_01996461.1| hypothetical protein DORLON_02475 [Dorea longicatena DSM 13814]
gi|149752294|gb|EDM62225.1| hypothetical protein DORLON_02475 [Dorea longicatena DSM 13814]
Length = 478
Score = 37.2 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 31/260 (11%), Positives = 79/260 (30%), Gaps = 33/260 (12%)
Query: 31 SREASLFSSILACLIYLLF---------FFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
S++ I + +L+ G S+ + L + + ++
Sbjct: 217 SKDLGAALIIFVVYLVMLYVATHQPLYILAGLGAGSLGAVAAYHLFTHVKTRVNVWRDPF 276
Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNLNHVKPSFKRVSLREGIKRIY 140
+ ++ + G+ L Q P + ++ F +S G+
Sbjct: 277 GTYDNGGYQVAQSLFAIGTGGWF---GAGLYQGQPDTIPVSAEDFIFSAISEEMGLIYAM 333
Query: 141 SI------------NNLVNFMKSFVKIILVG----TIITISLTENYFTMLDFISANPHSI 184
+ N + F K++ +G I + LT T + +
Sbjct: 334 CLILICVSCYVMFLNIAMQLHNLFYKMVALGLGTCYIFQVFLTIGGATKFIPSTGVTLPL 393
Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM----SKQEIKDEIKQSYGNP 240
+ + ++ LIM + + + + K ++ S+QE +++ +P
Sbjct: 394 VSYGGSSLISTLIMFAIIQGLYILREDEEEDIERRKKERLRAKRSRQENAARYRETEYDP 453
Query: 241 IIKNRQKSIARSRIRHKMME 260
R + + + K +
Sbjct: 454 QRAKRSQKARKEAAQGKARK 473
>gi|119584948|gb|EAW64544.1| sodium channel, voltage-gated, type XI, alpha, isoform CRA_a [Homo
sapiens]
Length = 1776
Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 4/181 (2%)
Query: 43 CLIYLLFFFSPGIYSVTSDLHVLL--ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
C++ LL S I ++ + H+ +L I I+ L+ + L +
Sbjct: 1440 CVVVLLSIVSTMISTLENQEHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMS 1499
Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVG 159
L +F IG L + + + + F +V+ GI I++ + M +I G
Sbjct: 1500 LPSLFNIGLLLFLIMFIYAILGMNW-FSKVNPESGIDDIFNFKTFASSMLCLFQISTSAG 1558
Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
+S + S N H + + DI + + +
Sbjct: 1559 WDSLLSPMLRSKESCNSSSENCHLPWHSHILLCQLXXXXXXXXPLGEDDFDIFYEVWEKF 1618
Query: 220 S 220
Sbjct: 1619 D 1619
>gi|297195174|ref|ZP_06912572.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152669|gb|EFH31918.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
ATCC 25486]
Length = 805
Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
RE +L + L TS + L+ SA + E ++ + + +
Sbjct: 655 RELPEEGLVLGGAVMLELSLPIMALGFTSMMFGLIISALVKTAEKTMPLLVMFAIIQVVF 714
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE 134
+ + L + SYL+ + F +++
Sbjct: 715 TGCLF-ILHGTVGVNEFSYLMPSRWAVAAAGTTLDFNKINPNT 756
>gi|288941282|ref|YP_003443522.1| sodium/hydrogen exchanger [Allochromatium vinosum DSM 180]
gi|288896654|gb|ADC62490.1| sodium/hydrogen exchanger [Allochromatium vinosum DSM 180]
Length = 582
Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 19/88 (21%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
S E + + L S G+ V + I + + L
Sbjct: 215 RSTELFTLTVLFVSLAAAWITGSLGLSMAFGGFLVGMMLGETEFRHQIEAAIRPFRDVLL 274
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+ I L L +
Sbjct: 275 GLFFIGIGMLFDLSALPAVWPLAFGGAL 302
>gi|163859236|ref|YP_001633534.1| putative cytochrome c asssembly protein [Bordetella petrii DSM
12804]
gi|163262964|emb|CAP45267.1| putative cytochrome c asssembly protein [Bordetella petrii]
Length = 446
Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 12/205 (5%)
Query: 26 GNAPISR--EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-----DIS 78
G+ P+S E + S++ L YL + ++ + ++++SAT L D +
Sbjct: 180 GHIPVSNLYEVFVLFSLITALFYLYYERKYATRALGGFVLLVISSATVFLLWYAFTRDAA 239
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
I L+ L +L +P + S ++ ++ + S+ R++ +
Sbjct: 240 QIQPLVPALKSWWMKLHVPANFIGYGTFSLSAMVGFAYLIKQHGTTTSWARLAPLFVLGV 299
Query: 139 IYSINNLVN-----FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
+ + +V V + I+ L S + + V
Sbjct: 300 LLCVEPMVFRTDGLSATWMVYFGVGVVIVGGILLGRRRIAQALPSLEVLDDIMYRAIAVG 359
Query: 194 KVLIMILLFIATLTVLDIGWSYHQW 218
+ + L D +Y QW
Sbjct: 360 FAFFTVATILGALWAADAWGAYWQW 384
>gi|190337434|gb|AAI63719.1| Trpm7 protein [Danio rerio]
Length = 1789
Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K I RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 260 RRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTG-RA 318
Query: 301 KKMRKI 306
+
Sbjct: 319 ADILAY 324
>gi|157960383|ref|YP_001500417.1| sulfate transporter [Shewanella pealeana ATCC 700345]
gi|157845383|gb|ABV85882.1| sulphate transporter [Shewanella pealeana ATCC 700345]
Length = 382
Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 5/148 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ F + LI L F GI+ + A +R + V ++ +
Sbjct: 24 DLGTFLPLALGLIALNHFSPQGIFMGFGLFALFTAFYYRRPIPVQPMKVITALVIAQGLT 83
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
++ + M + + P+ GI+ + + +
Sbjct: 84 PGMLQASGMLMGIILLVLAYSGAITWMAKQLSPAIS-----IGIQLAIGLQLIWMGGQMM 138
Query: 153 VKIILVGTIITISLTENYFTMLDFISAN 180
+ L+G + I+L + F + +++
Sbjct: 139 SQTWLIGLVAFIALFASKFLPMRYLAMP 166
>gi|71834284|ref|NP_001025232.1| transient receptor potential cation channel subfamily M member 7
[Danio rerio]
gi|62001713|gb|AAX58598.1| transient receptor potential melastatin 7 [Danio rerio]
Length = 1774
Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K I RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 260 RRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTG-RA 318
Query: 301 KKMRKI 306
+
Sbjct: 319 ADILAY 324
>gi|297488033|ref|XP_002696651.1| PREDICTED: transient receptor potential cation channel, subfamily
M, member 6-like [Bos taurus]
gi|296475498|gb|DAA17613.1| transient receptor potential cation channel, subfamily M, member
6-like [Bos taurus]
Length = 1670
Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K I+ +I ++ + +++ P ++ L Y++ E PV+V G A
Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350
Query: 301 KKMRKIAYEH 310
+ A+++
Sbjct: 351 SDILSFAHKY 360
>gi|119913489|ref|XP_606035.3| PREDICTED: transient receptor potential cation channel, subfamily
M, member 6 [Bos taurus]
Length = 1670
Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K I+ +I ++ + +++ P ++ L Y++ E PV+V G A
Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350
Query: 301 KKMRKIAYEH 310
+ A+++
Sbjct: 351 SDILSFAHKY 360
>gi|28378598|ref|NP_785490.1| ABC transporter, permease protein [Lactobacillus plantarum WCFS1]
gi|308180755|ref|YP_003924883.1| ABC transporter, permease protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28271434|emb|CAD64339.1| ABC transporter, permease protein [Lactobacillus plantarum WCFS1]
gi|308046246|gb|ADN98789.1| ABC transporter, permease protein [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 250
Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLLT 85
+S+ + +IL +I L F + + S L T ++ + LT
Sbjct: 92 QVLVSK----WLTILGLMIGLSGFSTLMSLGLKLSFFRRLPNYGTIWHTWGLNMLSTGLT 147
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLI---------QRIPVLNLNHVKPSFKRVSLREGI 136
L L + L++ L I + +I Q L + +++ +
Sbjct: 148 LLFLMSVVLLLGTLFTSSTPAILTGIIGYFIVTIFNQLCFYLYAKVSWLKWNPLNMI-NL 206
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISL 166
L + + + +G I + L
Sbjct: 207 GEQIQTPQLQQLTRLNLSTLTIGYIAYLLL 236
>gi|149617148|ref|XP_001519932.1| PREDICTED: similar to transient receptor potential cation channel,
subfamily M, member 7, partial [Ornithorhynchus
anatinus]
Length = 544
Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 262 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTG-RA 320
Query: 301 KKMRKI 306
+
Sbjct: 321 ADILAY 326
>gi|108799507|ref|YP_639704.1| hypothetical protein Mmcs_2540 [Mycobacterium sp. MCS]
gi|119868620|ref|YP_938572.1| hypothetical protein Mkms_2585 [Mycobacterium sp. KMS]
gi|126435161|ref|YP_001070852.1| hypothetical protein Mjls_2578 [Mycobacterium sp. JLS]
gi|108769926|gb|ABG08648.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694709|gb|ABL91782.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126234961|gb|ABN98361.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length = 378
Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 15/177 (8%), Positives = 51/177 (28%), Gaps = 6/177 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
E +++A ++ + + + S + ++ T +D +
Sbjct: 77 EVGTVLALIALVVVFIVGWK---RNPGSPVMLMFLCTTLIVWQDPIMNWAPFAVYNPELL 133
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS---FKRVSLREGIKRIYSINNLVNFM 149
L+ + + +L+ + PS +++ ++G + +S + L++
Sbjct: 134 HWPESWPLVSLSPTVEPFLVFGYVMFYFAPYFPSVWILRKLQAKKGPQSFFSRHPLISLG 193
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
+ I + + S+ F + + +
Sbjct: 194 SLALVIGFIFDACLEIFLVRTGMYIYSQVIPFGSVFAGTTFQFPLIWESFAVCFVMV 250
>gi|224824491|ref|ZP_03697598.1| glycosyl transferase family 39 [Lutiella nitroferrum 2002]
gi|224602984|gb|EEG09160.1| glycosyl transferase family 39 [Lutiella nitroferrum 2002]
Length = 501
Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 8/193 (4%)
Query: 29 PIS-REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
S R+A+L ++ L F + +V +D ++ + + +
Sbjct: 111 ARSGRDAALACVLVLASGLLFFLAAG---TVMTDPALMFSVTLIQTAFWHALAQHSRRWG 167
Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
L + + L + + + + + V+ KP ++ + G+ I
Sbjct: 168 YLFFVGMGVGLLAKGPVAIVLAAMPIGLWVIVRKQWKPLWQHLPWFGGLVLTLLIAAPWY 227
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
+ G + + E+ LD HA + + + + +
Sbjct: 228 L---LAEHRTPGFLNYFIMGEHVSRFLDPGWKGDRYGFAHA-TPHGMIWLYTVAALLPWS 283
Query: 208 VLDIGWSYHQWYS 220
+ + W Q
Sbjct: 284 LAMLPWLARQRRR 296
>gi|325685473|gb|EGD27570.1| arginine/ornithine APC family amino acid transporter, antiporter
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 394
Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 30 ISREASLF--SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
++ + +++L ++ L+F+ I S LASA Q L + + ++
Sbjct: 231 RAKSLNEAQQATMLGFVLLLVFYMMISILPYGSLTRAQLASAAQPAL--GNDLKMIVGDW 288
Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-KRVSLREGIKRIYSINNLV 146
+ + + + + + ++ + P F +++ ++ ++
Sbjct: 289 GMMIINIGLIISTIVSWLSWTMLPAETMLLIAEDGAAPKFWGKLNSKKAPTNALFTTAIL 348
Query: 147 NFMKSF 152
+ F
Sbjct: 349 QTIFLF 354
>gi|308745890|ref|YP_003934378.1| cytochrome c oxidase subunit I [Euphlyctis hexadactylus]
gi|307777731|dbj|BAJ21257.1| cytochrome oxidase subunit I [Euphlyctis hexadactylus]
Length = 516
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 57/207 (27%), Gaps = 19/207 (9%)
Query: 36 LFSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASR 93
+++ + L+ + + + D SAT + + L + +
Sbjct: 273 VWAMLSIGLLGFIVWAHHMFTTDLNVDTRAYFTSATMIIAIPTGVKVFSWLATMHGGIMK 332
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGI 136
P L + + VL + + ++ G
Sbjct: 333 WEAPMLWALGFIFLFTVGGLTGIVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGF 392
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
+ + K + K + ++LT L Y FT+ L
Sbjct: 393 VHWFPLFTGFTLNKLWAKTQFAVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAFTLWNTL 452
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLK 223
I I+ + V+ + + + +S +
Sbjct: 453 SSIGSLISLVGVIMLMFIIWEAFSAKR 479
>gi|224367336|ref|YP_002601499.1| hypothetical protein HRM2_02130 [Desulfobacterium autotrophicum
HRM2]
gi|223690052|gb|ACN13335.1| hypothetical protein HRM2_02130 [Desulfobacterium autotrophicum
HRM2]
Length = 68
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
LA++LF N+ IP + VA ++ I
Sbjct: 1 MANVLLAQALFADARENTYIPGDLLRQVANVLLWI 35
>gi|332883939|gb|EGK04219.1| hypothetical protein HMPREF9456_01247 [Dysgonomonas mossii DSM
22836]
Length = 353
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 22/221 (9%)
Query: 26 GNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
G SS + L+++L+F G + L LL + + H V
Sbjct: 136 GQIL----LDSVSSFIINSLVLVFVLYFMLIGGERMEKYLFSLLP-FDDDNKKSVIHSVK 190
Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
++ + L+ + G + + F + G I+
Sbjct: 191 MMVTSNAIGIPLLAIIQGVVATIGYIIFDAPSPILFGFLTC---FATIIPLIGTSLIWFP 247
Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS-----------ILYHAFFT 191
+ + + I + + N ++ FI + I+ F
Sbjct: 248 LAVYLALTGDWFNAIGLAIYALIVISNSDNLIRFILQKKMADTHPLITVFGVIIGLTLFG 307
Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
V+ LL + +DI + M+ + KD+
Sbjct: 308 FWGVIFGPLLLSVFILCIDIFKREYLDEKDTAMTIDDYKDD 348
>gi|328856528|gb|EGG05649.1| putative oligopeptide transporter [Melampsora larici-populina
98AG31]
Length = 704
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED---ISHIVFLLTHLSLS 90
S+ S + + + + +L + + ++ + T L
Sbjct: 504 LSVAFSQVIGTLLGAIVHLGTMRLILDSQREVLLQSNGNGIYTSWVLTSLAAQSTTWGLF 563
Query: 91 ASRLVIPG-LLLFMMFGIGSYLIQRIPVLNLNHVKPS--FKRVSLREGIKRIYSINNLVN 147
+ RL PG + + + + IP+ L+ KP F R+++ +++
Sbjct: 564 SGRLYSPGQIYAILPYCFIIGFLVPIPLFLLHKWKPKAGFNRLNVPLFTSSLFNCIKGAT 623
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
+ + +G L ++ + + + L +L ++
Sbjct: 624 SGRMTA--MFIGLYTQWFLKRHHSSWYQKYNYIISAALDGGTELAVLILSALV 674
>gi|192358987|ref|YP_001984163.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
gi|190685152|gb|ACE82830.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
Length = 468
Score = 37.2 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 21/175 (12%)
Query: 39 SILACLIYLLFFFSPG---------IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
+LA + LLFF + ++ + + + + + + V ++ L L
Sbjct: 40 ILLAGCLALLFFSTSWVQWNGHQAVLWDLETRQFHVFGTTFWPQDFILLSFVMVIAALLL 99
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL------NHVKPSFKRVSLREGIKRIYSIN 143
A +++ + ++ + V +L +K + L +G+KR S +
Sbjct: 100 FAVTILLGRVWCGYACPQSTWTWAFMWVESLIEGDRNQRIKLQASPMDLAKGLKRT-SKH 158
Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
L + I G + +S S + + +
Sbjct: 159 ALW-----LLMSIATGIAFVGYFVPVRELVQALLSLQWFSTSAAWVGIIAALTYL 208
>gi|229891904|sp|P0CAB9|VF257_ASFP4 RecName: Full=Transmembrane protein C257L; Short=pC257L
Length = 257
Score = 37.2 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ + G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKKTGAKGGQFANKYLE--RQDLELLGYSPTPIIGGDFMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K+K + EIK IK+ +P
Sbjct: 153 IAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKIKQHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|309792808|ref|ZP_07687251.1| hypothetical protein OSCT_3202 [Oscillochloris trichoides DG6]
gi|308225172|gb|EFO78957.1| hypothetical protein OSCT_3202 [Oscillochloris trichoides DG6]
Length = 674
Score = 37.2 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 17/162 (10%), Positives = 50/162 (30%), Gaps = 11/162 (6%)
Query: 35 SLFSSILACLIYLLFFF----SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
+ I L+ L +F + + S + +A + ++ D + + ++
Sbjct: 359 GMLLGIGVGLVVLPWFIRLLEGYLVGIIVSIIMTTAKTAGRSQMTDQVNSIIHISFFLPL 418
Query: 91 ASRLVIPGLLLFMMFGIG--SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
+P +++ ++ L+ V V P + R+ G +++
Sbjct: 419 LMWYAMPISIIWAIWQRRHTINLVAFWWVFVTLAVNPQWLRL-PGAGTLTNFAL----VI 473
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
+L G +++ + +L +
Sbjct: 474 AAYIPAALLGGVVVSWLVNRLRHPILQLFILLSMVGGIWWGW 515
>gi|226346531|gb|ACO49564.1| cytochrome oxidase subunit I [Homalogonia obtusa]
Length = 264
Score = 37.2 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 52/175 (29%), Gaps = 27/175 (15%)
Query: 50 FFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
+ ++++ + T L + S + ++ H + L + +F I
Sbjct: 89 YSPSMLWALGFVFLFTIGGLTGVILANSS--IDIMLHDTYYVVAHFHYVLSMGAVFAIIG 146
Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
IQ P+ + P + +KI + + +++T
Sbjct: 147 SFIQWFPLFTGMSMNPKW-------------------------LKIQFISMFLGVNITFF 181
Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
L Y +T ++ I ++ ++++ + +M
Sbjct: 182 PQHFLGLSGMPRRYSDYPDSYTGWNIVSSIGSAMSMVSIIMFIMILWESMISKRM 236
>gi|56310460|emb|CAE75819.1| cytochrome b [Heligmosomoides polygyrus]
Length = 229
Score = 37.2 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 58/196 (29%), Gaps = 11/196 (5%)
Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
+S+ +YL F+ + + +K+ ++LL + +++
Sbjct: 34 ASLFFVFLYLHIFYG-----------LFMMRYRLKKVWASGLTIYLLVMMEAFMGYVLVW 82
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
+ F + + L+ IP+ + V + + + + + + + + ++
Sbjct: 83 AQMSFWAAVVITSLLSVIPIWGPSIVMWVWSGFGVTSATLKFFFVLHFLVPWGLLLLVMF 142
Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
+ + + + Y + + L + +G
Sbjct: 143 HLIFLHSTGSTSSMYCHGDYDKICFGPDYWNKDMYNLIFWFLFLGFSLFYPFSLGDPEMF 202
Query: 218 WYSKLKMSKQEIKDEI 233
+ MS I E
Sbjct: 203 IEADPMMSPVHIVPEW 218
>gi|310941140|dbj|BAJ24460.1| NADH dehydrogenase subunit 4 [Phyllium giganteum]
Length = 443
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 7/175 (4%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDL-HVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+L +IYL FFF +S+ + + + + H+ L +
Sbjct: 147 LFSSFPMLLSIIYLYFFFGSLSFSLFFNFCYCYFIFYFCMIFSFLVKMPMFFVHIWLPKA 206
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIP--VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
+ P ++ G+ L V + + +S + + +L+ +
Sbjct: 207 HVEAPISGSMILAGVPLKLGGYGLFRVFSFLII----SGISFNYFWVSVGFMGSLLISLV 262
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
+ L I S+ ++ ++ N IL V L LF
Sbjct: 263 CLRQKDLKSLIAYSSVVHMGLVLMGLMTLNSWGILGSLILMVAHGLCSSGLFCLA 317
>gi|303398751|emb|CBW46732.1| C257L [African swine fever virus Georgia 2007/1]
Length = 257
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ + G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKKTGAKGGQFANKYLE--RQDLELLGYSPTPIIGGDFMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K K + EIK IK+ +P
Sbjct: 153 VAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKSKQHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|291612801|ref|YP_003522958.1| Na+/solute symporter [Sideroxydans lithotrophicus ES-1]
gi|291582913|gb|ADE10571.1| Na+/solute symporter [Sideroxydans lithotrophicus ES-1]
Length = 506
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 62/188 (32%), Gaps = 2/188 (1%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH--VLLASATQRKLEDISHIVFLL 84
+ + +++ S+L ++Y +F F P + ++ L +++ + I + L
Sbjct: 251 QSARTENIAIWGSVLGGVLYFMFAFVPMFLAYSATLIDPKMVSELVDSDPQMILPRLILR 310
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
+ L A + LL + + L+ + N +KP G+
Sbjct: 311 PEVHLFAQVMFFGALLSAIKSCASATLLAPSVTFSENILKPMLGHKLSDRGMLHTMRGVT 370
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L + + + I + Y L + L+ + L+ I ++
Sbjct: 371 LAFTVIVTLYAMNSKASIFKMVENAYQITLVMAFVPLVAGLFWKRSNTQGALVAIFCGLS 430
Query: 205 TLTVLDIG 212
+ I
Sbjct: 431 VWLSILIF 438
>gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis]
gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis]
Length = 526
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 19/189 (10%), Positives = 51/189 (26%), Gaps = 5/189 (2%)
Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
+ ++A + F + L +A + L IS + + L +
Sbjct: 261 TALLIALFVIAGSFGGLFGGKMGDILSTRFPNAGRIILAQISSASAI---PLAAILLLGL 317
Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHV--KPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
P ++ + + P F + + +Y+++ + S
Sbjct: 318 PDDPSTAFMHGLVLVVMGLFITWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFA 377
Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
+VG + S + +A + + I + +A +
Sbjct: 378 PPIVGLLAQYVYGYKPLPKGSSESEEIATDRRNAASLAKALYTAIGIPMALCCFIYSFLY 437
Query: 215 YHQWYSKLK 223
+ +
Sbjct: 438 RTYPRDRER 446
>gi|229891905|sp|P0CAC0|VF257_ASFWA RecName: Full=Transmembrane protein C257L; Short=pC257L
Length = 257
Score = 36.8 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ + G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKKTGAKGGQFANKYLE--RQDLELLGYSPTPIIGGDFMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K+K + EIK IK+ +P
Sbjct: 153 IAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKIKQHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|157377193|ref|YP_001475793.1| xanthine/uracil/vitamin C permease [Shewanella sediminis HAW-EB3]
gi|157319567|gb|ABV38665.1| xanthine/uracil/vitamin C permease [Shewanella sediminis HAW-EB3]
Length = 393
Score = 36.8 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 5/165 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ F ++ LI L F GI+ + A +R + V ++ +
Sbjct: 24 DLGTFLPLVLGLIALNHFSPQGIFMGFGVFALFTAFYYRRPIPVQPMKVIAALVIAQGLT 83
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
++ + M + + P+ GI+ I + +
Sbjct: 84 PGMLQASGMMMGVILLILAFSGAINWMAKQLSPAVS-----IGIQLAIGIQLMWMGAQMM 138
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
+ L+G L + F L +++ I+ + L+
Sbjct: 139 SQTWLLGLGAFTLLFCSRFLPLRYLAMPLVIIIGMLWQYHSGSLL 183
>gi|282889564|ref|ZP_06298106.1| hypothetical protein pah_c001o045 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500577|gb|EFB42854.1| hypothetical protein pah_c001o045 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 391
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 4/194 (2%)
Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
SRE S + + LI +S+ L T +K E + I
Sbjct: 131 AQSRELSYLAIVFGGLIGTFIGGHIFSFSLILMTVSLTIFLTVKKREKNNQIQIQGKTKY 190
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
+ + + S+LI L +P F + G K+ L+
Sbjct: 191 FIPAFRCLASKRIGFFLLTSSFLIGGSMQLIYQFWQPFFFKFPGVNGSKQSL---GLIFI 247
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
+ I L N M+ TV + + L
Sbjct: 248 AFMLTQYFTSKLIRKYVLK-NTEQMIYLTGLCWIIASISLLNTVHTENFISSIASFCLFF 306
Query: 209 LDIGWSYHQWYSKL 222
+ + ++L
Sbjct: 307 GMTAAASNLLMAQL 320
>gi|206896442|ref|YP_002247833.1| hypothetical protein COPRO5265_1577 [Coprothermobacter
proteolyticus DSM 5265]
gi|206739059|gb|ACI18137.1| hypothetical protein COPRO5265_1577 [Coprothermobacter
proteolyticus DSM 5265]
Length = 241
Score = 36.8 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 5/180 (2%)
Query: 31 SREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
SRE + ++ I + S + + + D + L
Sbjct: 59 SRELATLVMLITAAIAVGENALQSFAYFLYMFGFWDIFYYVFLKVFLDWPASILTWDVLF 118
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
V P L + +L K V I I +F
Sbjct: 119 FVPVPWVSPVLAPIICSLTMIVFGCIAVLLQQKGAHIKIKGVDWALFISGAAVI--FYSF 176
Query: 149 MKSFVKIILV-GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
+K +V +L G I I IS + F V ++L++I +F
Sbjct: 177 IKDYVTFLLSEGLPINIWALARNPNFQQLISQYVPTHYSWYLFFVGELLMVIGMFHVFRC 236
>gi|322705544|gb|EFY97129.1| NUDIX domain-containing protein [Metarhizium anisopliae ARSEF 23]
Length = 223
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 262 TSRATIIITNPTHYALALRYIQ--TENDAPVLVAKGQ-----NLIAKKMRKIAYEHNIPI 314
+I +P +A+ + P KG+ ++ A +R+ E IP+
Sbjct: 48 IVSCGCVIVDPAARKVAIVHDPDTGITQLP----KGRKNIGEDIHAAALREAHEETGIPV 103
Query: 315 FEEPSLA 321
LA
Sbjct: 104 ---APLA 107
>gi|293556503|ref|ZP_06675076.1| PTS lactose/cellobiose IIC component [Enterococcus faecium E1039]
gi|291601342|gb|EFF31621.1| PTS lactose/cellobiose IIC component [Enterococcus faecium E1039]
Length = 454
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 12/218 (5%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
S+ + L G ++ + + + A L +
Sbjct: 233 SQSLFSVIILALLSQLLWAMGIHGPNTIAAIRDTMFSEAGNANLLHYAESGTTWGAPYPI 292
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------ 144
+ + G LI I + + N S ++S G+ I +
Sbjct: 293 TYSGLATAFAEYGGSGATLGLIIAILIFSKNKESKSIGKLSFVPGLFNINEMVIFGLPII 352
Query: 145 -----LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
++ F+ + + I++G + L + P ++ T ++ +
Sbjct: 353 LNPIYIIPFIIAPLVNIMIGYTAVMILKIMPPVTIGIPWTTPGPLMPFLG-TGGNIVALF 411
Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ FI + I + +K + + E+++EI+
Sbjct: 412 VGFICLAVSVLIYSPFVIAANKAAIIEDEMENEIQSQE 449
>gi|162849276|emb|CAN10166.1| pC257L [African swine fever virus Benin 97/1]
gi|162849449|emb|CAN10414.1| pC257L [African swine fever virus OURT 88/3]
gi|291289510|emb|CBH29167.1| BA71V-C257L [African swine fever virus E75]
Length = 257
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ + G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKKTGAKGGQFANKYLE--RQDLELLGYSPTPIIGGDFMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K K + EIK IK+ +P
Sbjct: 153 VAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKSKQHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|261856432|ref|YP_003263715.1| cytochrome C class I [Halothiobacillus neapolitanus c2]
gi|261836901|gb|ACX96668.1| cytochrome c class I [Halothiobacillus neapolitanus c2]
Length = 493
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 1/160 (0%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ F+++LA + L F PG+ LL ++ + + ++
Sbjct: 144 MASFATMLAIVGILSFMMEPGMPDWAEKGGYLLGFYGDNTFAQLAIRIAFMFTMTAVVGG 203
Query: 94 LVIPGLLLFMMFGIGS-YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
+V+ GL + + L V + + ++ +I N + ++ +
Sbjct: 204 IVVAGLKDQVFKTWLARRLAVLGIVSTVVGIAFYPWYLNTLPAQAQIVMENRIPDYYGTA 263
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192
+ +L+ TI + T ML A ++
Sbjct: 264 ILTVLLSTIAYFAFTLFKPRMLTASIAGFATLSILILGLF 303
>gi|9628174|ref|NP_042760.1| pC257L [African swine fever virus]
gi|82051488|sp|Q65158|VF257_ASFB7 RecName: Full=Transmembrane protein C257L; Short=pC257L
gi|780436|gb|AAA65296.1| pC257L [African swine fever virus]
gi|1097456|prf||2113434BT C257L gene
Length = 257
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ + G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKKTGAKGGQFANKYLE--RQDLELLGYSPTPIIGGDFMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K K + EIK IK+ +P
Sbjct: 153 VAWDRFLNPAMMIFFLIILLCVILGIFYVLVRNTLRRKQKSKQHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|257387906|ref|YP_003177679.1| precorrin-8X methylmutase CbiC/CobH [Halomicrobium mukohataei DSM
12286]
gi|257170213|gb|ACV47972.1| Precorrin-8X methylmutase CbiC/CobH [Halomicrobium mukohataei DSM
12286]
Length = 281
Score = 36.8 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 265 ATIIITNPTHYALALRYIQTENDAP-VLVAKGQNLI--AK---KMRKIAYEHNIPIFEEP 318
A ++ N ALAL + P V+VA + A+ ++R++A EH +P
Sbjct: 159 AITVVGNAPTAALALADCIEDGTRPAVVVATPVGFVKAAESRTRLREVAAEHGVPTITNV 218
>gi|167535051|ref|XP_001749200.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772353|gb|EDQ86006.1| predicted protein [Monosiga brevicollis MX1]
Length = 551
Score = 36.8 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 27 NAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
+ P S+++S ++ + + + L L + F+ T
Sbjct: 363 DVPHSKDSSTLVALFSVFNTCGRLLSGYLSDAFAHRISRLGFLVMGSLLMGAVQVYFMFT 422
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
+ +V+ G+ F + L+ + + ++ G
Sbjct: 423 SIDGMYGAVVLLGIAYGSFFCLVPALVSEAFGMATFGATFGLQGLAPAAG 472
>gi|126278251|ref|XP_001380566.1| PREDICTED: similar to transient receptor potential cation channel,
subfamily M, member 7 [Monodelphis domestica]
Length = 2120
Score = 36.8 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 510 RRELEKAINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 569
>gi|268589769|ref|ZP_06123990.1| dual specificity phosphatase, catalytic domain protein [Providencia
rettgeri DSM 1131]
gi|291314924|gb|EFE55377.1| dual specificity phosphatase, catalytic domain protein [Providencia
rettgeri DSM 1131]
Length = 447
Score = 36.8 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 23/211 (10%)
Query: 39 SILACLIYLLFFFSPGI--YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
IL+ L++L+F Y + L +HI FL + S +
Sbjct: 17 IILSGLLWLVFLAPFFFLTYGQVNTYTATLDQVPSIVFSWETHIPFLPWTIIPYWSIDLF 76
Query: 97 PGLLLFMMFGIGSYLIQR----------IPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
GL LF+ I L +K SF R S +++ L
Sbjct: 77 YGLSLFICTTRKEQTIHGLRLITASLVACIGFLLFPLKFSFPRPSTDGLFGWMFNSLELF 136
Query: 147 NFMKSFVKIILVGTIITISLTEN------YFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
+ + + + + + L + +L S + + +I
Sbjct: 137 DLPFNQAPSLHIILLWILWLRFRAHTPTKWRWLLHSWSVLILISVLTTWQHHFIDVITGF 196
Query: 201 LFIATLTVLDIGWSYHQWY-----SKLKMSK 226
+ ++ L ++ QW+ KMSK
Sbjct: 197 VVGLLISYLLPIQTHWQWHYTGSPRSFKMSK 227
>gi|300768125|ref|ZP_07078030.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|300494189|gb|EFK29352.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
Length = 250
Score = 36.8 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLLT 85
+S+ + +IL +I L F + + S L T ++ + LT
Sbjct: 92 QVLVSK----WLTILGLMIGLSGFSTLMSLGLKLSFFRRLPNYGTIWHTWGLNMLSTGLT 147
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLI---------QRIPVLNLNHVKPSFKRVSLREGI 136
L L + L++ L I + +I Q L + +++ +
Sbjct: 148 LLFLMSVVLLLGTLFTSSTPAILTGIIGYFIVTIFNQLCFYLYAKVSWLKWNPLNMI-NL 206
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISL 166
L + + + +G I + L
Sbjct: 207 GEQIQTPQLQQLTRLNLSTLAIGYIAYLLL 236
>gi|40063357|gb|AAR38168.1| ABC transporter, ATP-binding/permease protein [uncultured marine
bacterium 580]
Length = 607
Score = 36.8 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 71/194 (36%), Gaps = 6/194 (3%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
++ ++ +++A L ++ F +Y++ L L+ ++ + +H+ FL ++
Sbjct: 33 KDIKIYVALMAILTAVIASFEAILYAILGKLIDLMVTSGPSDFFN-NHMSFLFLVGTIII 91
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
S + L + + N + + + + ++ ++ +
Sbjct: 92 SSTLFVALRTMVKHQTLAGTFPMRLRWNFHRLLLN-QSINFYNNEFSGRISAKVMQTTIA 150
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
+ + + I + + TM+ + + + + +I + FI L L
Sbjct: 151 LRDMWFILSDILVFVIVYIATMIILVGSLNTLLYAPFLIWLTAYVISLFYFIPKLAKL-- 208
Query: 212 GWSYHQWYSKLKMS 225
S +Q ++ M+
Sbjct: 209 --SKNQADARSMMT 220
>gi|281422584|ref|ZP_06253583.1| putative transporter [Prevotella copri DSM 18205]
gi|281403408|gb|EFB34088.1| putative transporter [Prevotella copri DSM 18205]
Length = 387
Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 51/199 (25%), Gaps = 22/199 (11%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
R+ S++ + S + + + Q + D+ I + +
Sbjct: 135 RDLKTISTLGGAAAGMAKL------SALGKTNDEIMTFLQPIVVDLHMIGNPYANYNYYL 188
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
S +++PGL++ +F I Y I N + I L+
Sbjct: 189 SSVMVPGLIMLFIFLITPYSIGTELKFNRARDWMRMAGNNPYLAIAGKMLPQTLIFLSIF 248
Query: 152 FVKIILVGTIITI----------------SLTENYFTMLDFISANPHSILYHAFFTVRKV 195
+ + ++ L+ F + F + V
Sbjct: 249 LLFEFYIYYVLQFPHPGGALPIILLGVLSVLSCQCFGIFTFGLMPSLRMSMSICSLWGVV 308
Query: 196 LIMILLFIATLTVLDIGWS 214
I L +D
Sbjct: 309 SFSICGATYPLFSMDSPIQ 327
>gi|262045274|ref|ZP_06018299.1| sulfate transporter [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259037330|gb|EEW38576.1| sulfate transporter [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 489
Score = 36.8 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 31/227 (13%)
Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS-------------------DLHVL 65
+GNA S + F+ L+ L + SP I V S L
Sbjct: 145 QGNAAFS--VTAFAVAAGGLLVLWLWGSPLIRRVKSLRWIPGLLIAVLLGCVTTLLLTHF 202
Query: 66 ----LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
LA+ + L + LL L A ++++ + + +L+
Sbjct: 203 APQQLAALPRITLPAFGSLGDLLGELESPA-WSAWRNPSVWVVAVTLALVASLETLLSQE 261
Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII----TISLTENYFTMLDFI 177
+K + + R + N + + + + +I + FI
Sbjct: 262 ALK-KLRPQNPPPSPNREMVAQGVGNLLSGVLGAMPITAVIVRSSVNVSNGAQSKLSIFI 320
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
I F + ++ + L L + + + +
Sbjct: 321 HGVLLLICGLWFSGLLTLIPLASLAAVLLYTGYKLATPRLFIEQFRQ 367
>gi|308745862|ref|YP_003934276.1| cytochrome c oxidase subunit I [Hoplobatrachus tigerinus]
gi|307777717|dbj|BAJ21244.1| cytochrome oxidase subunit I [Hoplobatrachus tigerinus]
Length = 516
Score = 36.8 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 23/208 (11%), Positives = 58/208 (27%), Gaps = 19/208 (9%)
Query: 36 LFSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASR 93
+++ + L+ + + + D SAT + + L + +
Sbjct: 273 VWAMLSIGLLGFIVWAHHMFTTDLNVDTRAYFTSATMIIAIPTGVKVFSWLATMHGGIIK 332
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGI 136
P L + + VL + + ++ G
Sbjct: 333 WEAPMLWALGFIFLFTVGGLTGIVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGF 392
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
+ + K + K + ++LT L Y +T+ L
Sbjct: 393 VHWFPLFTGFTLHKIWTKAQFAVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTL 452
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKM 224
I I+ + V+ + + + +S ++
Sbjct: 453 SSIGSLISLVGVIMMMFIIWEAFSAKRL 480
>gi|297530471|ref|YP_003671746.1| acid phosphatase/vanadium-dependent haloperoxidase related protein
[Geobacillus sp. C56-T3]
gi|297253723|gb|ADI27169.1| acid phosphatase/vanadium-dependent haloperoxidase related protein
[Geobacillus sp. C56-T3]
Length = 154
Score = 36.8 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFF 190
+ +G+K + L F+K +K + G L M SA + + A
Sbjct: 1 MNKGLKTALATIALAQFLKIPIKQLETGR-WDWRLFFETGGMPSSHSAGVSALATFIALE 59
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
+ + L + L V+ + +L + E+ +E+K+ G+P K
Sbjct: 60 RGVRTIDFALAALFGLIVMYDAQGVRRQAGELALRLNELAEEVKKLEGDPKQTVYHKQQR 119
Query: 251 RSRIR 255
+ R R
Sbjct: 120 QLRAR 124
>gi|126344956|ref|XP_001381964.1| PREDICTED: similar to putative renal organic anion transporter 1
[Monodelphis domestica]
Length = 565
Score = 36.8 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 15/186 (8%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
+ SRE +LAC++ + F S +YS+ +L + E+ + +L
Sbjct: 355 DLFRSREM---LVLLACIMCIWFSASLSLYSLALNLQ-------RFPGENPYLVQIILGV 404
Query: 87 LSLSASRLVIPGLLLFMM--FGIGSYLIQRIPVLNLNHVKPSFKRVSLREG-IKRIYSIN 143
+ + RL++P L + + S L+ ++ P R+ + +
Sbjct: 405 IDIP-FRLLVPKLANCLGRKLTLVSCLMLGAGLVLGTTPVPQVSRLDSSLRPLVPTTELG 463
Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
L + K ++ ++ L + I I V ++LL
Sbjct: 464 RLRMGLSVLAKGLMSASLSCTVLLAS-ELFPTSIRLTGLGITNMVGHLGGAVAPLVLLAG 522
Query: 204 ATLTVL 209
+L
Sbjct: 523 TANALL 528
>gi|55379601|ref|YP_137451.1| precorrin-8X methylmutase [Haloarcula marismortui ATCC 43049]
gi|55232326|gb|AAV47745.1| precorrin-8X methylmutase [Haloarcula marismortui ATCC 43049]
Length = 241
Score = 36.8 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 263 SRATIIITNPTHYALALRYIQTENDAP-VLVAKGQNLI--AK---KMRKIAYEHNIPIFE 316
A ++ N ALAL + P V+VA + A+ ++R++A EH +P
Sbjct: 150 DGAIAVVGNAPTAALALADCIEDGTRPAVVVATPVGFVKAAESRERLREVAAEHGVPTIT 209
Query: 317 EP 318
Sbjct: 210 NV 211
>gi|326909333|ref|YP_004327604.1| cytochrome c oxidase subunit I [Rana ishikawae]
gi|300508167|dbj|BAJ10915.1| cytochrome c oxidase subunit 1 [Rana ishikawae]
Length = 516
Score = 36.8 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 21/208 (10%), Positives = 59/208 (28%), Gaps = 19/208 (9%)
Query: 36 LFSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASR 93
+++ + L+ + + + D SAT + + L + +
Sbjct: 273 VWAMLSIGLLGFIVWAHHMFTTDLNVDTRAYFTSATMIIAIPTGVKVFSWLATMHGGIIK 332
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGI 136
P L + + +L + + ++ G
Sbjct: 333 WEAPMLWALGFIFLFTVGGLTGIILANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGF 392
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
+ + K + KI + ++LT L Y +T+ +
Sbjct: 393 VHWFPLFTGFTLHKLWAKIHFIIMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTV 452
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKM 224
I I+ + V+ + + + ++ ++
Sbjct: 453 SSIGSMISLVAVMLMMFIVWEAFAAKRL 480
>gi|16079028|ref|NP_389851.1| acetyltransferase [Bacillus subtilis subsp. subtilis str. 168]
gi|221309873|ref|ZP_03591720.1| hypothetical protein Bsubs1_10901 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314196|ref|ZP_03596001.1| hypothetical protein BsubsN3_10827 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319119|ref|ZP_03600413.1| hypothetical protein BsubsJ_10758 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323392|ref|ZP_03604686.1| hypothetical protein BsubsS_10872 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|81342428|sp|O34895|YODP_BACSU RecName: Full=Uncharacterized N-acetyltransferase YodP
gi|2415402|gb|AAB72070.1| YodP [Bacillus subtilis]
gi|2529466|gb|AAB81158.1| YokR [Bacillus subtilis subsp. subtilis str. 168]
gi|2634362|emb|CAB13861.1| putative acetyltransferase [Bacillus subtilis subsp. subtilis str.
168]
Length = 275
Score = 36.8 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 274 HYALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
+RY A P +VA + A+K+ A +H+ PI LA+ LF
Sbjct: 21 KRIRVVRYDGAIEKALPDIVAAAKEENAEKIIVYAKQHDEPI-----LAKQLFA 69
>gi|12852708|dbj|BAB29509.1| unnamed protein product [Mus musculus]
Length = 372
Score = 36.4 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|329925927|ref|ZP_08280637.1| ABC transporter, permease protein [Paenibacillus sp. HGF5]
gi|328939578|gb|EGG35927.1| ABC transporter, permease protein [Paenibacillus sp. HGF5]
Length = 293
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 13/195 (6%)
Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
+F + L L+ L F++S ++ ++L + + L + +V LL S L
Sbjct: 110 FVFGTFLGALLGLSFWWSKSYAGISEPYLIILNALPKLALAPV--LVILLGIGFFSKVAL 167
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS--F 152
++ S + V P +++ G KR +V
Sbjct: 168 AFSMTVVVSALSAYSGV---------KSVDPDMEKLMYSLGAKRHQVFTKVVVPWSMPWI 218
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
+ + + + ++ + + + V + +++ V+ G
Sbjct: 219 ISSLRINIALALAGAIVGEFIASSQGVGRMIMYAGTILDINLVWVGVVVLSLLSMVMYWG 278
Query: 213 WSYHQWYSKLKMSKQ 227
+ + ++KQ
Sbjct: 279 VVVLEKWLSKGLTKQ 293
>gi|237809460|ref|YP_002893900.1| apolipoprotein N-acyltransferase [Tolumonas auensis DSM 9187]
gi|237501721|gb|ACQ94314.1| apolipoprotein N-acyltransferase [Tolumonas auensis DSM 9187]
Length = 517
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 20/175 (11%), Positives = 57/175 (32%), Gaps = 7/175 (4%)
Query: 35 SLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLL-THLSLSAS 92
+L+ ++L+ L+ F ++ + + LLAS Q+ + + +L ++L +
Sbjct: 17 ALWGALLSGLLCGAAFAPFKLWPLAFFAMFGLLASLHQQTGKRAFWLTWLFAMAMNLPSL 76
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-----SFKRVSLREGIKRIYSINNLVN 147
+ + F + + + + + P R R G+ R+ +
Sbjct: 77 WWIHVSMTQFGGISLPAAFVLVAILCAYLSLYPALAAALLNRFFPRTGVTRLLFAFPALW 136
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
+ + ++ + L + A + + +L +
Sbjct: 137 LLSDWAMGHVMTGFPWMWLGYSQVDTWLTGFAPLFGVQSITLAVLWSAAACLLCW 191
>gi|24373215|ref|NP_717258.1| glutathione-regulated potassium-efflux system protein KefB,
putative [Shewanella oneidensis MR-1]
gi|24347439|gb|AAN54702.1|AE015610_6 glutathione-regulated potassium-efflux system protein KefB,
putative [Shewanella oneidensis MR-1]
Length = 648
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 60/197 (30%), Gaps = 16/197 (8%)
Query: 27 NAPISR--EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
SR E + S+++ L+ F G+ + + + +
Sbjct: 208 EVARSRSNELFVLSTLVVALVTGAFTQWLGLSMALGAFMAGMLLGESQYRRQLEADIRPF 267
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY--SI 142
L + + I +L + +IQ + L + F + + G+ R+
Sbjct: 268 RDLLMGLFFISIGMML------NFALVIQFWWQILLILLAVVFGKALIIHGLLRLVGEPF 321
Query: 143 NNLVNFMKSFVKIILVGTII------TISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
++ S ++ ++ L+ TML ++ SI +
Sbjct: 322 RIAISTALSLAQVGEFSFVVLALAVSYGLLSNETSTMLVMVAVLSMSIAPWLVRHCMDIA 381
Query: 197 IMILLFIATLTVLDIGW 213
+L + V D+
Sbjct: 382 KWLLGIRQSGHVDDVVP 398
>gi|312233269|ref|YP_004021487.1| cytochrome c oxidase subunit I [Occidozyga martensii]
gi|268370763|gb|ACZ02639.1| cytochrome c oxidase subunit I [Occidozyga martensii]
Length = 515
Score = 36.4 bits (83), Expect = 6.2, Method: Composition-based stats.
Identities = 24/210 (11%), Positives = 59/210 (28%), Gaps = 19/210 (9%)
Query: 36 LFSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASR 93
+++ + L+ + + + D SAT + + L +
Sbjct: 274 VWAMLSIGLLGFIVWAHHMFTTDLNVDTRAYFTSATMIIAIPTGVKVFSWLATMHGGIIS 333
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGI 136
P L + + VL + + ++ G
Sbjct: 334 WEAPMLWALGFIFLFTVGGLTGIVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGF 393
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
+ + K + KI I +++T L Y +T+ L
Sbjct: 394 VHWFPLFTGYTLHKLWTKIHFFVMFIGVNMTFFPQHFLGLAGMPRRYSDYPDAYTLWNAL 453
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
I I+ + V+ + + + ++ ++ K
Sbjct: 454 SSIGSLISLMAVIMMMFIIWEAFAAKRLLK 483
>gi|7020006|dbj|BAA90958.1| unnamed protein product [Homo sapiens]
Length = 575
Score = 36.4 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|322697041|gb|EFY88825.1| high affinity methionine permease [Metarhizium acridum CQMa 102]
Length = 591
Score = 36.4 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 20/224 (8%), Positives = 65/224 (29%), Gaps = 17/224 (7%)
Query: 27 NAPISREAS--LFSSILAC---------LIYLLFFFSPGIYSVTSDLHVLLASATQRKLE 75
S+E + +F + + ++ +L F + + ++ ++ +
Sbjct: 329 QFAKSKEIAAGVFFTTVFGTGAAETALNVLVMLSAFGNLLAVLVGQ-SRMIREIGRQGVL 387
Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
+ ++ L+ F+M V++L + +++ G
Sbjct: 388 PFTSFWVATKPFGTPIGPYLLKWLMTFVMIVAPPAGDAFQFVVSLKTYPDAVFGLAMALG 447
Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
+ I + KS ++ V + + M + +F+
Sbjct: 448 VFVIRRRRSRNKLPKSQFRVWDVLLVFYNLVQAFLLVMPWWPPKGGPYAGDVSFWYATYC 507
Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
++ I + I + + ++ E+ + +
Sbjct: 508 VVGIGVIILCGLYYVAWMYVIPKWRGYR-----VRAEVTHAEDD 546
>gi|325478617|gb|EGC81729.1| DNA internalization competence protein ComEC/Rec2-like protein
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 724
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
+ L L +L+++F ++ +LA+ + +IS + + L +
Sbjct: 348 FTLAIQLGILTFLVYYFGRI------NILTILANFLVLPIFNISMYLIFIVLLFSPLFKA 401
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
+ L + F + S L + +N F + + + + LVN + +K
Sbjct: 402 FLKIGFLSLDFLVRSMLNITAVLSRVNISVIDFNKPNFLLALYGFLLVLILVNLERKLIK 461
>gi|257880686|ref|ZP_05660339.1| PTS system, IIC component [Enterococcus faecium 1,230,933]
gi|257814914|gb|EEV43672.1| PTS system, IIC component [Enterococcus faecium 1,230,933]
Length = 454
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 12/218 (5%)
Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
S+ + L G ++ + + + A L +
Sbjct: 233 SQSLFSVIILALLSQLLWAMGIHGPNTIAAIRDTMFSEAGNANLLHYAESGTTWGAPFPI 292
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------ 144
+ + G LI I + + N S ++S G+ I +
Sbjct: 293 TYSGLATAFAEYGGSGATLGLIIAILIFSKNKESKSIGKLSFVPGLFNINEMVIFGLPII 352
Query: 145 -----LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
++ F+ + + I++G + L + P ++ T ++ +
Sbjct: 353 LNPIYIIPFIIAPLVNIMIGYTAVMILKIMPPVTIGIPWTTPGPLMPFLG-TGGNIVALF 411
Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ FI + I + +K + + E+++EI+
Sbjct: 412 VGFICLAVSVLIYSPFVIAANKAAIIEDEMENEIQSQE 449
>gi|313239692|emb|CBY14583.1| unnamed protein product [Oikopleura dioica]
Length = 1278
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 24/219 (10%), Positives = 69/219 (31%), Gaps = 13/219 (5%)
Query: 29 PISREASLFSSIL--ACLIYLL--FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
P S+EA + ++ L ++ ++ + + +H +L+ + L+ + L
Sbjct: 84 PKSKEAGKGTKVMQKGLLKVMIKAYWKPALMAACFKFIHDILSFVNPQVLKMFIRWISLC 143
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK--------RVSLREGI 136
+ +++ LL + L Q V + +K +++
Sbjct: 144 AESTSVQEGVLLALLLFIVSTLQTLLLHQYFWVGSNAGLKVKNSITSFLYKKSLNISSQA 203
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
+ +++ +VN M + + + + + F + ++
Sbjct: 204 RGMFTHGEIVNMMTVDAQKFQDIFTYIHMIWSGPMQIGLSLYFLWQELGPAIFPGIAVMI 263
Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKM-SKQEIKDEIK 234
++I + +M + E+ IK
Sbjct: 264 LLIPANAMVGKKIGEIMRQLMQTKDKRMKTISELVTAIK 302
>gi|212540460|ref|XP_002150385.1| forkhead domain protein [Penicillium marneffei ATCC 18224]
gi|210067684|gb|EEA21776.1| forkhead domain protein [Penicillium marneffei ATCC 18224]
Length = 451
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 208 VLDIGWSYHQWYSKLKMSKQEIKD---EIKQSYGNPIIKNRQKSIARSRIRHKM 258
+ + + KMS QEI + G+P K Q SI + ++
Sbjct: 235 YAYLLYEALRSAKDHKMSLQEIYRWFEDNTNKAGDPRSKGWQSSIRHNLSMNEA 288
>gi|321458669|gb|EFX69733.1| hypothetical protein DAPPUDRAFT_328816 [Daphnia pulex]
Length = 643
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 19/200 (9%)
Query: 43 CLIYLLFF----------FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
CL +L+F I +V + LL + + + + FL+ ++
Sbjct: 425 CLFFLMFITLGLDSQFCTLEGFITAVVDEWPRLLRRRKEIFIAVVCFVSFLIGLSCVAQG 484
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
+ + L L R +GIK + + +
Sbjct: 485 GMYVFQLFNTYACSNLVLLWLIFFECIAISWGFGVNRF--YDGIKDMIGY-----YPTRW 537
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI- 211
K T I + F + +F Y + +L+ + I +
Sbjct: 538 FKFCWCFTTPLICIGVFIFYLAEFTPLTYLDYHYPWWGHFIGLLLALSSMICVPAYMAYV 597
Query: 212 -GWSYHQWYSKLKMSKQEIK 230
KL+ + EI+
Sbjct: 598 VWRQEGNLMEKLRRTMDEIR 617
>gi|91069851|gb|ABE10782.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC1363]
Length = 601
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 22/190 (11%), Positives = 62/190 (32%), Gaps = 13/190 (6%)
Query: 35 SLFSSILACLIYLLFFFSPGIYS---VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
S+ +S+ L L+ +S S +T L + L +R + + +
Sbjct: 128 SIVASLGFALSPLIIIWSRTAVSDALLTGTLGISLLLFWRRMASENND------KCISAW 181
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
L L+ + + + L + + K +++ ++G + I L++
Sbjct: 182 LFLGFAILVKGPVAFVLALLTITFFLFCQKNWKTLLSKINPKKG----FLITTLISVPWY 237
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
++++ G + + N H+ + FF + + + +
Sbjct: 238 LLELLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFFYIMILASLPFTPFLYYGIFKT 297
Query: 212 GWSYHQWYSK 221
+ + +
Sbjct: 298 FKDFFKSSKE 307
>gi|303288377|ref|XP_003063477.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455309|gb|EEH52613.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 548
Score = 36.4 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 16/178 (8%), Positives = 47/178 (26%), Gaps = 10/178 (5%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLH----------VLLASATQRKLEDISHIVFLLTHLS 88
++ +I L + + + + + L+A + + E I L +
Sbjct: 129 VLMMGVIVLWYLYPTIVQYLVGLMRCRTLDSGGEVYLIADLSLKCSEPIHAFWMFLLFVF 188
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
+ + IP L ++ G + + ++ ++
Sbjct: 189 IIVYVIGIPWGLHILLRYEGKNWTTHQMRFRVGFLYKGHDLSDRWWWEAVTFARKAVITC 248
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
+ + + +L F ++ + H + + I L
Sbjct: 249 IVVLCSDVTRMGSYVVVWVLEACFILHFYASPYANERMHRIEWWGLLAAIATYNIGIL 306
>gi|73666728|ref|YP_302744.1| TrkA-N [Ehrlichia canis str. Jake]
gi|72393869|gb|AAZ68146.1| Kef-type potassium/proton antiporter, CPA2 family [Ehrlichia canis
str. Jake]
Length = 569
Score = 36.4 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 23/208 (11%), Positives = 60/208 (28%), Gaps = 16/208 (7%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
S E + +++L L + + L A D+ +V L L
Sbjct: 215 KSNEIFIATTLLIVLGAAFITENFNLSMALGAFVSGLLVAETEYRHDVEQVVLPFKRLLL 274
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
+ + + +I + +++ + + + R + + +
Sbjct: 275 GLFFMTVGMSIDIKFVLNKLPIIT---LASISLIALKSFIIFILCRFFR-FQLAAAIQAG 330
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
+ I+ ++A + + T+ + + + F L L
Sbjct: 331 LLLSQGGEFAFILFG------------LAAEKNVLSSDLAQTLMMITTVTMAFTPLLAAL 378
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
S K+ ++ QE+ + K
Sbjct: 379 GDWISKLITKKKISLNSQELTLDTKDLD 406
>gi|89072552|ref|ZP_01159124.1| virulence factor MviN [Photobacterium sp. SKA34]
gi|89051656|gb|EAR57109.1| virulence factor MviN [Photobacterium sp. SKA34]
Length = 519
Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 17/184 (9%), Positives = 53/184 (28%), Gaps = 7/184 (3%)
Query: 26 GNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
G+ +R+ + + L ++ ++ F + L F L
Sbjct: 77 GDVDRTRDLIAKAAGTLGGIVTIVTLFGVLGSGAVTALF-GFGWFWDWMHGGADAEKFEL 135
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
L ++ P L + ++ + ++ P F +++ + +
Sbjct: 136 ASL---LLKITFPYLWFITFVALSGAILNTLGKFAISSFTPVF--LNISIIGCAWFVSPH 190
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
L + VG ++ + ++ + K+++ L ++
Sbjct: 191 LAQPEIGLAIGVFVGGLVQFCFQLPFLYREGYLVRPKWGWNDPGVTKILKLMLPALFGVS 250
Query: 205 TLTV 208
+
Sbjct: 251 VTQI 254
>gi|254556814|ref|YP_003063231.1| ABC transporter, permease protein [Lactobacillus plantarum JDM1]
gi|254045741|gb|ACT62534.1| ABC transporter, permease protein [Lactobacillus plantarum JDM1]
Length = 250
Score = 36.4 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLLT 85
+S+ + +IL +I L F + + S L T ++ + LT
Sbjct: 92 QVLVSK----WLTILGLMIGLSGFSTLMSLGLKLSFFRRLPNYGTIWHPWGLNMLSTGLT 147
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLI---------QRIPVLNLNHVKPSFKRVSLREGI 136
L L + L++ L I + +I Q L + +++ +
Sbjct: 148 LLFLMSVVLLLGTLFTSSTPAILTGIIGYFIVTIFNQLCFYLYAKVSWLKWNPLNMI-NL 206
Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISL 166
L + + + +G I + L
Sbjct: 207 GEQIQTPQLQQLTRLNLSTLTIGYIAYLLL 236
>gi|224483188|gb|ACN50421.1| cytochrome oxidase subunit I [Pseudosermyle phalangiphora]
Length = 252
Score = 36.4 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 24/208 (11%), Positives = 58/208 (27%), Gaps = 19/208 (9%)
Query: 37 FSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLSASRL 94
F+ + L+ + + + D SAT + L + S
Sbjct: 25 FAMMAIGLLGFVVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWLATMHGSKLTF 84
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-----------------KRVSLREGIK 137
L + + VL+ + + + ++ G
Sbjct: 85 SASCLWSLGFVFLFTLGGLTGIVLSNSSIDITLHDTYYVVAHFHYVLSMGAVFAIMAGFI 144
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
+ Y + + +++K + I ++LT L Y FT ++
Sbjct: 145 QWYPLFTGLTMNSTWLKTQFITMFIGVNLTFFPQHFLGLAGMPRRYSDYPDMFTSWNIVS 204
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMS 225
I I+T+ ++ + + +
Sbjct: 205 SIGALISTIGMMMFIMILWESIISKRQT 232
>gi|195469745|ref|XP_002099797.1| GE16690 [Drosophila yakuba]
gi|194187321|gb|EDX00905.1| GE16690 [Drosophila yakuba]
Length = 256
Score = 36.4 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 18/221 (8%)
Query: 24 NEGNAPISRE--ASLFSSILACLIYLLFFF--SPGIYSVTSDLHVL------------LA 67
+G+ P + A L+ F I S L
Sbjct: 18 EKGDYPRATNGVVFGAIVTFASFFVLMMSFCSPYWIESYEETLASFKNMGLWQYCFKDFV 77
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
L+ + + +H ++PG L+ + + I VL L +
Sbjct: 78 YPKYAFLKHFNGCHNIFSHEYYVIREYLLPGWLMAVQGFVTMSFIIVFLVLALLSLTII- 136
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
R+ L+ ++ + + L + + + + + + N Y
Sbjct: 137 -RLPLKAVLQYEWLLVRLSYLGTAISSLFMFLAVCIFGGCAYRRDWMMYPKFNVLGWSYA 195
Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
+L + L + Q ++M QE
Sbjct: 196 LAVVTFMLLGLAALILQREARQAYDARGEQKNLVMQMEMQE 236
>gi|88856475|ref|ZP_01131133.1| conserved membrane-spanning protein [marine actinobacterium
PHSC20C1]
gi|88814342|gb|EAR24206.1| conserved membrane-spanning protein [marine actinobacterium
PHSC20C1]
Length = 598
Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 21/187 (11%)
Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
+E ++ I+LL F + T L A A + +
Sbjct: 290 QVWQVKETFTLFGLIGFGIFLLAFTRAML--TTRAFAGLRAPAAVIAPTTRKGLAWFWGG 347
Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
L +SA L+L +G+ +P V
Sbjct: 348 LVVSAIISGWSWLILANTPWVGAVAFNIMPFFMPQGAVF-------------------FV 388
Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
F + I + + L LD ++ F + L++++ A +
Sbjct: 389 AFWAAINAIAAIIIMTISYLVFGRKNGLDLRASGVLPGWKKFFHGIGLALVVVVSAYAIV 448
Query: 207 TVLDIGW 213
VLD +
Sbjct: 449 FVLDYFF 455
>gi|310641529|ref|YP_003946287.1| hypothetical protein PPSC2_c2074 [Paenibacillus polymyxa SC2]
gi|309246479|gb|ADO56046.1| hypothetical protein PPSC2_c2074 [Paenibacillus polymyxa SC2]
Length = 49
Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 276 ALALRYIQTENDAPVLVAKGQNLI 299
A+AL+Y E++AP++VAKG +
Sbjct: 22 AVALKYTPGESEAPIVVAKGSGPL 45
>gi|229891902|sp|P0CAB7|VF257_ASFK5 RecName: Full=Transmembrane protein C257L; Short=pC257L
Length = 257
Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 125 PSFKR--VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+R ++ G K N + + ++++ I + + D +
Sbjct: 95 WKMQRCLINKNTGAKGGQFANKYLE--RQDLELLGYSPTPLIGGDLMFTALPDKVLRTIP 152
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPI 241
+ +I+L L + + K K+ + EIK IK+ +P
Sbjct: 153 VAWDRFLNPAIMIFFLIILLCVILGIFYVLVRNTLRRKQKNKLHQMEIKRFIKEKEQDPY 212
Query: 242 I 242
I
Sbjct: 213 I 213
>gi|288801365|ref|ZP_06406819.1| potassium uptake protein TrkH [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331748|gb|EFC70232.1| potassium uptake protein TrkH [Prevotella sp. oral taxon 299 str.
F0039]
Length = 485
Score = 36.4 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 2/187 (1%)
Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
SI L +++ P + + ++D+ + L +
Sbjct: 81 FSIFGSLPFMITGAIPHFTDAFFETMSGFTTTGATIIDDVESLPHGLLFWRSMTHWIGGL 140
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
G++ F + + S + + + + P ++ R + + + + +
Sbjct: 141 GIVFFTIALLPSLVGGSVKIFSAEATGPIQSKLHPRLSTNSKWIWSVYLILTIACIASFK 200
Query: 158 VGTIITISLTENYFTMLDFISANPH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
+ + + + H SILY T+ + I L
Sbjct: 201 LCGMGLFDCINYSMAITATGGFSTHNSSILYFHSSTIEYLSIFFCFASGVNFTLLYMAMA 260
Query: 216 HQWYSKL 222
+ + L
Sbjct: 261 KRRFKTL 267
>gi|91791721|ref|YP_561372.1| phosphopantetheine attachment site [Shewanella denitrificans OS217]
gi|91713723|gb|ABE53649.1| Phosphopantetheine attachment site [Shewanella denitrificans OS217]
Length = 404
Score = 36.4 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 15/177 (8%), Positives = 48/177 (27%), Gaps = 6/177 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
+ + C + LLF I + + + L + + + + +
Sbjct: 187 DLGTVVVLFVCTVSLLFLAGARIVDFLVLVMFGIITFVGLVLFEPYRMRRVTSFMDP--- 243
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
S + + S ++++ + + +
Sbjct: 244 ---WEDPFGSGYQLTQSLMAYGRGDWFGQGLGNSIQKLAYLPEAHTDFIFAVIGEEIGFI 300
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
I ++ + ++L L ++A P + ++ A++ +L
Sbjct: 301 GIICVLLVLFFVALRAIRLGNLCLLNAKPFEGYLSYGIGIWICFQTVVNVGASIGML 357
>gi|325969486|ref|YP_004245678.1| hypothetical protein VMUT_1975 [Vulcanisaeta moutnovskia 768-28]
gi|323708689|gb|ADY02176.1| hypothetical protein VMUT_1975 [Vulcanisaeta moutnovskia 768-28]
Length = 476
Score = 36.4 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 59/178 (33%), Gaps = 13/178 (7%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
++ S++ ++ + + IY++ L V + S + + L + S
Sbjct: 58 QDIKTALSLMIGILVFNYVVAGIIYALYGPLKVTINSLGVVTMYVTPSMPIWLRYPSNQI 117
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
+ + + + +Y I R +L + R + L+ +
Sbjct: 118 AFTYAVLVATWPFEILIAYYIYRSFS-------------NLGNKVLRYAGLLMLIGAVLY 164
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
V + + I++ L + L + H +R + +++ + TL L
Sbjct: 165 VVLVGAIFMILSYVLMLIGWLTLRGEVKDHVHAKLHVTRILRLIAWSLMISLLTLVTL 222
>gi|218675749|gb|AAI69233.2| transient receptor potential cation channel, subfamily M, member 7
[synthetic construct]
Length = 648
Score = 36.4 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|114799732|ref|YP_758778.1| glutathione-regulated potassium-efflux system protein KefC
[Hyphomonas neptunium ATCC 15444]
gi|114739906|gb|ABI78031.1| glutathione-regulated potassium-efflux system protein KefC
[Hyphomonas neptunium ATCC 15444]
Length = 601
Score = 36.4 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
+RE +S+L L + G+ + + + ++ + +
Sbjct: 220 ARAREVMTAASLLLVLGAAWWMQLGGLSTAMGAFLAGVLLSESSYRHELEADIEPFRGIL 279
Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
L L + L + ++ ++ L+ + + + + G+ R + N+
Sbjct: 280 LGLFFLAVGMSLDLNV------VLGNWEIIALSVIAFTLLKAAGVYGVARAFRANHREAV 333
Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
++ + + ++D + + + + + ++I
Sbjct: 334 ERTVLMTQGGEFAFVLYAAALAVGIIDPEGSAMLTAIIIVSMLMTPLFVLI 384
>gi|326332017|ref|ZP_08198302.1| cytochrome bd-I oxidase subunit II [Nocardioidaceae bacterium
Broad-1]
gi|325950155|gb|EGD42210.1| cytochrome bd-I oxidase subunit II [Nocardioidaceae bacterium
Broad-1]
Length = 332
Score = 36.4 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 53/183 (28%), Gaps = 7/183 (3%)
Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-------LASATQRKLEDISHIVFLLT 85
E ++ +++ ++ F S DL L + + + + +
Sbjct: 4 EVAVAAALFVGVLAYALFGGADFGSGYFDLTAGGARRGAELRTLIDHSIGPVWEVNHVWL 63
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
L P +M + L+ + + L +F++ S R + +
Sbjct: 64 IYCLVVWWTGFPESFAAVMTTLIVPLLLALLGIVLRGASFAFRKYSATLSQARTFGVVFA 123
Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
+ + + + V I + S + ++ V + +F+
Sbjct: 124 TSSIITPFFLGTVAGAIASGRVPAEGYGDRWSSWLNPTSVFGGIIAVGTCAFLAGVFLCA 183
Query: 206 LTV 208
V
Sbjct: 184 DAV 186
>gi|322701278|gb|EFY93028.1| NUDIX domain-containing protein [Metarhizium acridum CQMa 102]
Length = 224
Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 262 TSRATIIITNPTHYALALRYIQTE--NDAPVLVAKGQ-----NLIAKKMRKIAYEHNIPI 314
+I +P +A+ + P KG+ ++ A +R+ E IP+
Sbjct: 49 IVSCGCVIVDPAARKVAIVHDPDTRITQLP----KGRKNIGEDIHAAALREAHEETGIPV 104
Query: 315 FEEPSLA 321
LA
Sbjct: 105 T---PLA 108
>gi|218674844|ref|ZP_03524513.1| type III secretion system translocation protein [Rhizobium etli
GR56]
Length = 26
Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEG 26
M++ND + KT PS K++ EG
Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREG 26
>gi|257080998|ref|ZP_05575359.1| amino acid antiporter [Enterococcus faecalis E1Sol]
gi|256989028|gb|EEU76330.1| amino acid antiporter [Enterococcus faecalis E1Sol]
Length = 458
Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 21/182 (11%)
Query: 37 FSSILACLIYLLFFFSPGIYSVT------------SDLHVLLASATQRKLEDISHIVFLL 84
+ +L ++LL F I D+ + K D+ L+
Sbjct: 272 WFIMLMAFLFLLTLFGNMISWSLGVNNTACYAAENGDMPKFFEK--RSKKNDMPIGAALM 329
Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP---SFKRVSLREGIKRIYS 141
+ S ++ P L +F L + +L+ V P +++ R +
Sbjct: 330 NGIVASVVIVLAPILPNQDLFWAFFSLNVVLFLLSYIPVFPAFYKLRKIDPDT--PRPFK 387
Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
+N F+K V + ++ II++ T +A + + + +++
Sbjct: 388 VNGKPGFLKVLVVLPMIMIIISLVFTAVPLDF--SPAALNEKLPITIGAIIFILFGEVII 445
Query: 202 FI 203
++
Sbjct: 446 YV 447
>gi|227818990|ref|YP_002822961.1| ABC transporter permease [Sinorhizobium fredii NGR234]
gi|227337989|gb|ACP22208.1| putative permease component of ABC transporter [Sinorhizobium
fredii NGR234]
Length = 340
Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
REA L + ILA + + F + + +L S + + +V + L +
Sbjct: 34 REAGLIAIILALCVMMSFASPHFL--TLGNFRAMLMSFSVEGI----VVVGMTILLIVGG 87
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-SINNLVNFMK 150
L + ++ F M GS + + + V + S+ GI + +I L +F+
Sbjct: 88 IDLAVGSVVCFAMVFSGSLFLAGVDPWTASLVGIAAS--SVIGGIMGFFVTIVGLNHFIT 145
Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
S +++V + I ++ S T+ V +IL+FIA + + D
Sbjct: 146 SLAAMVIVRGLCLIITKGTPLSLFTLPSG----FKAVGQGTLYGVPYVILIFIAVVILFD 201
Query: 211 IGWSYHQWYSKL 222
+ K+
Sbjct: 202 FLLRQATAFRKV 213
>gi|28563971|gb|AAO32364.1| YMR279C [Saccharomyces bayanus]
Length = 543
Score = 36.4 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 22/209 (10%), Positives = 60/209 (28%), Gaps = 15/209 (7%)
Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
I+ L L + S GI++ L ++ VF++ + +
Sbjct: 335 MIMILLAVFLGWGSFGIWTFYYMSFQLNLRHYSPVWTGGTYFVFVIFGTIAAFMVALSIK 394
Query: 99 LLLFMMFGIGSYLI--QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI- 155
+ + + + ++ VK SF +++ + ++ +
Sbjct: 395 RVGPAFLLCFALVAFDVGSIMFSVLPVKQSFWKLNFGMQAILCFGMDLSFPASSIILSDG 454
Query: 156 ------ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI-----LLFIA 204
+ G+++ + + L + H I + ++ I L +
Sbjct: 455 LPMEYQGMAGSLVNTVINYSASLCLGMGATVEHQINKNGKDLLKGYRGAIYLGVGLASLG 514
Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
L + + K + E+
Sbjct: 515 VLISFTYMLETFWNNRRDRQ-KDSVITEM 542
>gi|310777591|gb|ADP23778.1| ATP synthase F0 subunit 6 [Anodonta woodiana]
gi|310777606|gb|ADP23792.1| ATP synthase F0 subunit 6 [Anodonta woodiana]
gi|310777621|gb|ADP23806.1| ATP synthase F0 subunit 6 [Anodonta woodiana]
gi|310777636|gb|ADP23820.1| ATP synthase F0 subunit 6 [Anodonta woodiana]
gi|310777651|gb|ADP23834.1| ATP synthase F0 subunit 6 [Anodonta woodiana]
Length = 233
Score = 36.4 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 17/196 (8%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL-------------ASATQRKLEDISHI 80
S F + L+ + S + ++V+L + Q L + I
Sbjct: 25 VSSFMGLFIALMGVWMMASSANVIFFALVNVILGLVKSCSGKFFGGFALGQVSLFMMIFI 84
Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
V + + S L L + I L+ V + + +
Sbjct: 85 VNIFGMIPNVFSPTSHLSLTLVLAMMIWFCLVLSGWVFSWKESA---GHLVPIGSPMGLI 141
Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
+ L+ + ++ I +G + ++T + ML I S Y F + +++
Sbjct: 142 PLLVLIESVSVLIRPITLGVRLAANITMGHL-MLHVIGEYVVSFFYEVSFIGSLLGSVVM 200
Query: 201 LFIATLTVLDIGWSYH 216
L +
Sbjct: 201 LGYIIFEFAVSFLQAY 216
>gi|156838729|ref|XP_001643065.1| hypothetical protein Kpol_401p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156113655|gb|EDO15207.1| hypothetical protein Kpol_401p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 1313
Score = 36.4 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 9/211 (4%)
Query: 39 SILACLIYLLFFFS-PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
I + L YL +YS A T+ + I ++ H +
Sbjct: 506 VIFSALTYLFHLSKLDIVYSFALQYVPYFAVVTEWVNNNF--IAVIIRHCHGYTQNTMRN 563
Query: 98 GLLLFMMFGIGSYLIQRIPVLNLN-HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
++ + +YL + + + + F R + + R ++ L MK +K+
Sbjct: 564 KFIIRAAPCLATYLTAISIICSSSGWISRGFSRENPMKNRSRRFAFQVLF-VMKCTLKVF 622
Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
+ I + MLDF P + F + ++ + +
Sbjct: 623 TLFFIELLGFPMFAGLMLDFSLFCPLLGSSNQFIILFELCSEFPPLAFAIYWGIGTIYMY 682
Query: 217 QWYSKLKMSKQEIKDE----IKQSYGNPIIK 243
+ + M +Q I +S +P IK
Sbjct: 683 WFAKYIGMIRQHIIRPGVLFFIRSPDDPNIK 713
>gi|119597813|gb|EAW77407.1| transient receptor potential cation channel, subfamily M, member 7,
isoform CRA_c [Homo sapiens]
Length = 1864
Score = 36.0 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|114657038|ref|XP_510400.2| PREDICTED: transient receptor potential cation channel subfamily M
member 7 [Pan troglodytes]
Length = 1865
Score = 36.0 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|148612863|ref|NP_060142.3| transient receptor potential cation channel subfamily M member 7
[Homo sapiens]
gi|56404941|sp|Q96QT4|TRPM7_HUMAN RecName: Full=Transient receptor potential cation channel subfamily
M member 7; AltName: Full=Channel-kinase 1; AltName:
Full=Long transient receptor potential channel 7;
Short=LTrpC-7; Short=LTrpC7
gi|13959785|gb|AAK44211.1| LTRPC7 [Homo sapiens]
gi|119597811|gb|EAW77405.1| transient receptor potential cation channel, subfamily M, member 7,
isoform CRA_a [Homo sapiens]
gi|119597814|gb|EAW77408.1| transient receptor potential cation channel, subfamily M, member 7,
isoform CRA_a [Homo sapiens]
Length = 1865
Score = 36.0 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|13562153|gb|AAK19738.2|AF346629_1 channel-kinase 1 [Homo sapiens]
Length = 1864
Score = 36.0 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|332235549|ref|XP_003266967.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7 [Nomascus leucogenys]
Length = 1866
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|297696636|ref|XP_002825490.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7-like [Pongo abelii]
Length = 1866
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|261405546|ref|YP_003241787.1| binding-protein-dependent transport systems inner membrane
component [Paenibacillus sp. Y412MC10]
gi|261282009|gb|ACX63980.1| binding-protein-dependent transport systems inner membrane
component [Paenibacillus sp. Y412MC10]
Length = 293
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 13/195 (6%)
Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
+F + L L+ L F++S ++ ++L + + L + +V LL S L
Sbjct: 110 FVFGTFLGALLGLSFWWSKSYAGISEPYLIILNALPKLALAPV--LVILLGIGFFSKVAL 167
Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS--F 152
++ S + V P +++ G KR +V
Sbjct: 168 AFSMTVVVSALSAYSGV---------KSVDPDMEKLMYSLGAKRHQVFTKVVVPWSMPWI 218
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
+ + + + ++ + + + V + +++ V+ G
Sbjct: 219 ISSLRINIALALAGAIVGEFIASSQGVGRMIMYAGTILDINLVWVGVVVLSMLSMVMYWG 278
Query: 213 WSYHQWYSKLKMSKQ 227
+ + ++KQ
Sbjct: 279 VVVLEKWLSKGLTKQ 293
>gi|187372500|gb|ACD02996.1| cytochrome oxidase subunit I [Clitarchus hookeri]
Length = 254
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 19/208 (9%)
Query: 37 FSSILACLIYLLFFFSPGI-YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
F+ L+ + + + D SAT VF + +
Sbjct: 26 FAMAAIGLLGFMVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWLATMYGSKLTL 85
Query: 96 IPGLLLFMMFGIGSYLIQ-RIPVLNLNHVKPSF-----------------KRVSLREGIK 137
P L M F L VL+ + + + ++ G
Sbjct: 86 SPSCLWAMGFVFLFTLGGLTGIVLSNSSIDITLHDTYYVVAHFHYVLSMGAVFAIMAGFI 145
Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
+ + + ++ ++KI I ++LT Y FT ++
Sbjct: 146 QWFPLFTGLSMNPLWLKIQFTTMFIGVNLTFFPQHFXGLAGMPRRYSDYPDMFTTWNIVS 205
Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMS 225
+ I+TL+++ + S ++ +
Sbjct: 206 SMGXIISTLSMMMFIMILWESMSSMRQT 233
>gi|311244743|ref|XP_003121563.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7 [Sus scrofa]
Length = 1866
Score = 36.0 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|194206663|ref|XP_001918225.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7 [Equus caballus]
Length = 1909
Score = 36.0 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 306 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 365
>gi|301770089|ref|XP_002920457.1| PREDICTED: transient receptor potential cation channel subfamily M
member 7-like [Ailuropoda melanoleuca]
Length = 1910
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 306 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 365
>gi|281341526|gb|EFB17110.1| hypothetical protein PANDA_009197 [Ailuropoda melanoleuca]
Length = 1867
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|74000124|ref|XP_862813.1| PREDICTED: similar to Transient receptor potential cation channel
subfamily M member 7 (Long transient receptor potential
channel 7) (LTrpC7) (Channel-kinase 1) isoform 5 [Canis
familiaris]
Length = 1859
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|223462573|gb|AAI50710.1| Transient receptor potential cation channel, subfamily M, member 7
[Mus musculus]
Length = 1863
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|222082066|ref|YP_002541431.1| sugar ABC transporter [Agrobacterium radiobacter K84]
gi|221726745|gb|ACM29834.1| sugar ABC transporter [Agrobacterium radiobacter K84]
Length = 342
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 11/191 (5%)
Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
REA L + ILA I + F + + +L S + + +V + L +
Sbjct: 36 REAGLIAIILALCILMSFASPHFL--TLGNFRAMLMSFSVEGI----VVVGMTILLIVGG 89
Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
L + ++ F M GS + + + + + + + + ++ L +F+ S
Sbjct: 90 IDLSVGSVVCFSMVLSGSLFLMGLDPWSASLIGILASAL-IGCAMGFFVTVIGLNHFITS 148
Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
+++V I I ++ + S T V +IL+F+A + + D
Sbjct: 149 LAAMVIVRGICLIITKGTPLSLFTLPT----SFKAIGQGTFYGVPFVILIFVAVVAIFDF 204
Query: 212 GWSYHQWYSKL 222
+ K+
Sbjct: 205 LLRRATAFRKV 215
>gi|109468761|ref|XP_001056331.1| PREDICTED: transient receptor potential cation channel, subfamily
M, member 7 [Rattus norvegicus]
gi|215274952|sp|Q925B3|TRPM7_RAT RecName: Full=Transient receptor potential cation channel subfamily
M member 7; AltName: Full=Long transient receptor
potential channel 7; Short=LTrpC-7; Short=LTrpC7;
AltName: Full=Transient receptor potential-phospholipase
C-interacting kinase; Short=TRP-PLIK
Length = 1862
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|256773287|ref|NP_001157797.1| transient receptor potential cation channel subfamily M member 7
isoform 2 [Mus musculus]
gi|14211383|gb|AAK57433.1|AF376052_1 transient receptor potential phospholipase C interacting kinase
[Mus musculus]
gi|122890058|emb|CAM14549.1| transient receptor potential cation channel, subfamily M, member 7
[Mus musculus]
Length = 1862
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|256773285|ref|NP_067425.2| transient receptor potential cation channel subfamily M member 7
isoform 1 [Mus musculus]
gi|56404937|sp|Q923J1|TRPM7_MOUSE RecName: Full=Transient receptor potential cation channel subfamily
M member 7; AltName: Full=Channel-kinase 1; AltName:
Full=Long transient receptor potential channel 7;
Short=LTrpC-7; Short=LTrpC7; AltName: Full=Transient
receptor potential-phospholipase C-interacting kinase;
Short=TRP-PLIK
gi|14009344|gb|AAK50377.1| LTRPC7 [Mus musculus]
gi|122890059|emb|CAM14550.1| transient receptor potential cation channel, subfamily M, member 7
[Mus musculus]
gi|148696221|gb|EDL28168.1| transient receptor potential cation channel, subfamily M, member 7
[Mus musculus]
Length = 1863
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|8131903|gb|AAF73131.1|AF149013_1 transient receptor potential-related protein [Mus musculus]
Length = 1863
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|74000122|ref|XP_862791.1| PREDICTED: similar to transient receptor potential cation channel,
subfamily M, member 7 isoform 4 [Canis familiaris]
Length = 1875
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|323344800|ref|ZP_08085024.1| Trk family potassium uptake protein TrkB [Prevotella oralis ATCC
33269]
gi|323094070|gb|EFZ36647.1| Trk family potassium uptake protein TrkB [Prevotella oralis ATCC
33269]
Length = 485
Score = 36.0 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 47/148 (31%), Gaps = 7/148 (4%)
Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
+ S+ L +++ + P + + ++++ + L +
Sbjct: 79 MVFSLFGTLPFIISGYVPSFTDAYFETMSGFTTTGATVIDNVDILPHGLLFWRSLTQWIG 138
Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
G++ F + + S + + V + P ++ R + + ++ +
Sbjct: 139 GLGIVFFTIALLPSMVGGSVKVFSAEATGPINSKLHPRLSMSAKW-------IWMVYLVL 191
Query: 156 ILVGTIITISLTENYFTMLDFISANPHS 183
+ N+F L+F + +
Sbjct: 192 TAACFGCYLLGGMNWFDGLNFSMSTTAT 219
>gi|74000116|ref|XP_535475.2| PREDICTED: similar to Transient receptor potential cation channel
subfamily M member 7 (Long transient receptor potential
channel 7) (LTrpC7) (Channel-kinase 1) isoform 1 [Canis
familiaris]
Length = 1867
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|293346294|ref|XP_002726218.1| PREDICTED: transient receptor potential cation channel, subfamily
M, member 7 [Rattus norvegicus]
gi|149023200|gb|EDL80094.1| rCG27212, isoform CRA_b [Rattus norvegicus]
Length = 1862
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 242 IKNRQKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
+ +K+I + RI ++ + +I P L Y+Q PV+V +G A
Sbjct: 263 RRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 322
>gi|88602294|ref|YP_502472.1| hypothetical protein Mhun_1003 [Methanospirillum hungatei JF-1]
gi|88187756|gb|ABD40753.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
Length = 461
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 22/184 (11%), Positives = 58/184 (31%), Gaps = 13/184 (7%)
Query: 41 LACLIYLLFFFSPGIYSVT--------SDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
++ + +L + + ++ L + + T I+F L
Sbjct: 151 MSVVFFLSSLYGRSVRALFLFLILAGFVFLGWFMFTGTNPTTLFPPLILFYQFSWHLLLG 210
Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
+++ + + + S IQ N +KP + ++ + ++++ +S
Sbjct: 211 SVMLVLVPCCIALLLFSPDIQSGTKNYPNRMKPLIRHLNRFPN--PPLAAKDVIDLWRS- 267
Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
+VG I L + + H T + +I + T +
Sbjct: 268 --GSIVGQTIFSFLVPLITIWFFLSLLDEYVSTIHLLLTFAMITGIIASTMYTWLCMFDS 325
Query: 213 WSYH 216
+S +
Sbjct: 326 FSIY 329
>gi|157736591|ref|YP_001489274.1| major facilitator superfamily AmpG-like permease [Arcobacter
butzleri RM4018]
gi|157698445|gb|ABV66605.1| MFS family, AmpG related permease [Arcobacter butzleri RM4018]
Length = 391
Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 14/188 (7%)
Query: 36 LFSSILACLIYLLFF--FSPGIYSVTSDLHVLLASATQRKLEDISHIVFL-------LTH 86
+S+L I+LL F + + L VL + +E+ I+++ +
Sbjct: 146 SMASLLGGGIFLLVFNHLGWNLTFILMALLVLFSLFALYFIEENDEIIYVEKISSKNIIT 205
Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
+ +L F I + + P L VKP V++ GI +
Sbjct: 206 FFKQKDVGIWIFILSFYFVSISALWVFMKPYLIHKGVKPD--DVAIWVGIYGSFIAILGG 263
Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT---VRKVLIMILLFI 203
K +++ I + N F+ I +++ ++ + I + I
Sbjct: 264 ALSNYIGKKFSKKSLLIIFMFFNIFSTSLLIFIEQYNLTFYYLIISVTFIALAIALSSAI 323
Query: 204 ATLTVLDI 211
++D
Sbjct: 324 IFSMIMDY 331
>gi|298207548|ref|YP_003715727.1| competence protein [Croceibacter atlanticus HTCC2559]
gi|83850184|gb|EAP88052.1| competence protein [Croceibacter atlanticus HTCC2559]
Length = 679
Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 54/184 (29%), Gaps = 17/184 (9%)
Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
GN ++ + ++ SP + + L + ++ + +FL
Sbjct: 286 GNVFK----TVLIVLFLWCFAIIAGLSPSVIRAVTMFSFLAVALNLKRKTSTLNTLFL-- 339
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
++ L+ + + + V ++ ++P ++ R + Y L
Sbjct: 340 -------SALVILLVEPQFLFSVGFQLSYLAVFSIILLQPKLSKLIPRP---KYYISRIL 389
Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
+ +G + + F L F++ + I + L
Sbjct: 390 WGVFTVTI-AAQIGVLPLSLFYFHQFPGLFFVTNLIIIPFLGIILGYGLLCISLALLGIL 448
Query: 206 LTVL 209
+ +
Sbjct: 449 PSFI 452
>gi|258645626|ref|ZP_05733095.1| putative cell division ATP-binding protein FtsE [Dialister invisus
DSM 15470]
gi|260402987|gb|EEW96534.1| putative cell division ATP-binding protein FtsE [Dialister invisus
DSM 15470]
Length = 555
Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 25/222 (11%)
Query: 18 KIEDALNEGNAPISREA--SLFSSILACLIYLLFFFSPGI------------YSVTSDLH 63
+++ A E RE + +++ L FF+ G Y++T+
Sbjct: 10 RLQKAREE--TAK-REFKYATAQTLIGIFALALMFFAWGSHLLPVTDPVESNYALTAKEM 66
Query: 64 VLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
VL + ++ + +S+S S + + V +
Sbjct: 67 VLSGNWLSPQIYGHFWFDKPAMVYWLMSISYSLFGFTDFASRLPAAFCGAATITLLVWYI 126
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
+ + ++ I +L F II ++ ++ + + N
Sbjct: 127 RRIT----KNNVVAVWSGIMLATSL-EFWIISHAIITDSMLMLFTVPTLLSAYIGLMENN 181
Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
++ F + L + + +L + W KL
Sbjct: 182 RRHMVIAYFSSGLACLSKGPVGLVLPGMLLLIWCGLMRNKKL 223
>gi|68171517|ref|ZP_00544898.1| TrkA-N [Ehrlichia chaffeensis str. Sapulpa]
gi|88657864|ref|YP_506974.1| putative glutathione-regulated potassium-efflux system protein KefB
[Ehrlichia chaffeensis str. Arkansas]
gi|67999064|gb|EAM85734.1| TrkA-N [Ehrlichia chaffeensis str. Sapulpa]
gi|88599321|gb|ABD44790.1| putative glutathione-regulated potassium-efflux system protein KefB
[Ehrlichia chaffeensis str. Arkansas]
Length = 568
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 23/208 (11%), Positives = 60/208 (28%), Gaps = 16/208 (7%)
Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
S E + +++L L + + L A D+ +V L L
Sbjct: 215 KSNEIFIATTLLIVLGAAFITENFNLSMALGAFVSGLLVAETEYRHDVEQVVLPFKRLLL 274
Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
+ + + +I + +++ + + + R + + +
Sbjct: 275 GLFFMTVGMSIDIKFVLNKLPIIT---LASISLIALKSFIIFILCRFFR-FQLAAAIQAG 330
Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
+ I+ ++A + + T+ + + + F L L
Sbjct: 331 LLLSQGGEFAFILFG------------LAAEKNVLSSDLAQTLMMITTVTMAFTPLLATL 378
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
S K+ ++ QE+ + K
Sbjct: 379 GDWISKLITKKKISLNSQELILDTKDLD 406
>gi|322388969|ref|ZP_08062540.1| valine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
gi|321144338|gb|EFX39745.1| valine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
Length = 1218
Score = 36.0 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 32 REASLFSSILACLIYLLFFF-----SPGIYSVTSDLHVL-LASATQRKLEDISHIVFLLT 85
RE S++ LL F S I S+ + L +L L + L ++S I +L
Sbjct: 95 REIFFSISLIMFSSILLSLFFDTKTSSEIISIITTLGLLRLMISITMILTELSFISLMLL 154
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK---RVSLREGIKRIYSI 142
+++ S +I + S L+ + + + K ++++ ++ + +
Sbjct: 155 FVTIYVSLFIIGIFDIKWWALATSLLVLWNYINSREFLIFLNKGDTKINIPAKLEYRWQV 214
Query: 143 NNLVNFMKSFVKIILVGTIITISLTEN 169
N +++++ +F+ + + N
Sbjct: 215 NKIISYIVTFIIYFSLLLSSVLIEKSN 241
>gi|226330941|ref|ZP_03806459.1| hypothetical protein PROPEN_04864 [Proteus penneri ATCC 35198]
gi|225201736|gb|EEG84090.1| hypothetical protein PROPEN_04864 [Proteus penneri ATCC 35198]
Length = 385
Score = 36.0 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 56/198 (28%), Gaps = 14/198 (7%)
Query: 39 SILACLIYLLFFFSPGIYSVT-------------SDLHVLLASATQRKLEDISHIVFLLT 85
+LA ++ L+ + G + + L + L + I +
Sbjct: 175 GLLAGVVSLMMIVAHGASYLQMRTTGELHERTRKTTYITSLITFIAFALAGVWLIYGIDG 234
Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK-PSFKRVSLREGIKRIYSINN 144
+ SA P L + P+ +S I +
Sbjct: 235 FIITSAIDTAGPSSPLLKTVSHEAGAWMTNYNNYPVLWVLPALGLLSPLLAIVATKANKG 294
Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
F+ + + I V +++ F + + +V+ ++ +
Sbjct: 295 GWAFLFTSLTIAGVILTCGVTMFPFVMPSSTFPDVSLTMWDATSSLFTLQVMTVVAIIFV 354
Query: 205 TLTVLDIGWSYHQWYSKL 222
+ +L W Y + + +L
Sbjct: 355 PIVLLYTIWCYWKMHGRL 372
>gi|312129947|ref|YP_003997287.1| glycosyl transferase, family 4, conserved region [Leadbetterella
byssophila DSM 17132]
gi|311906493|gb|ADQ16934.1| Glycosyl transferase, family 4, conserved region [Leadbetterella
byssophila DSM 17132]
Length = 389
Score = 36.0 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 13/208 (6%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
S +++A + L+F G +S+ L AS + S+ + + S
Sbjct: 172 LSAGVAMIASGGFALWFMLNGYWSLACLGFSLSASLFAFLRFNFSNTSKIFMGDTGSLIV 231
Query: 94 LVIPGLLLFMMFGIGS------YLIQRIPVLNLNHVK-PSFKRVSLRE----GIKRIYSI 142
++ + + Q PV+ + + P F + + K +S
Sbjct: 232 GFWVAVMALKFVEVNVLNINSDNVYQNAPVIAIALLSVPIFDTLRVFSLRILRGKSPFSA 291
Query: 143 N--NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
+ +L + M +V + I T + + + F + V L +++
Sbjct: 292 DRSHLHHLMVDLGLSHVVASFILYGFTILFTSAIYFSRMYFTNTQLAISILVIFSLYILV 351
Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQE 228
F+ + S + + + K +
Sbjct: 352 GFLLEKERVRYVRSKASTFKEDRQKKMD 379
>gi|126131798|ref|XP_001382424.1| allantoate permease [Scheffersomyces stipitis CBS 6054]
gi|126094249|gb|ABN64395.1| allantoate permease [Scheffersomyces stipitis CBS 6054]
Length = 531
Score = 36.0 bits (82), Expect = 9.6, Method: Composition-based stats.
Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 11/222 (4%)
Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA-SRLVIPGL 99
+ CL+Y F S S L + + Q + + F + +L + ++
Sbjct: 86 ILCLLYCFQFMDKLSNSYASVLGLRTDLSMQGDMYSWTGSAFYIGYLVFEFPASRLLQKF 145
Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG-IKRIYSINNLVNFMKSFVKIILV 158
+ I L I +L+ P F + G ++ + NL+ + K +
Sbjct: 146 PVAKTLSIFIILWGIILMLHATPQYPGFIALRTILGMLESSVTPANLLITGSFYRKEEVF 205
Query: 159 GTIITISLTENYFTMLDFISA---------NPHSILYHAFFTVRKVLIMILLFIATLTVL 209
+ + TML + + + F + L +++ FI V
Sbjct: 206 LRVALWFSSNGIGTMLGSGAIAHSLVQYEDSYSIAPWKLTFIITGALTVVIGFIFMFHVP 265
Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
D + + KM E +Q +GN K Q A
Sbjct: 266 DTPANAWFLNEEEKMLVVERIRANQQGFGNKHFKMHQFKEAM 307
>gi|56419884|ref|YP_147202.1| hypothetical protein GK1349 [Geobacillus kaustophilus HTA426]
gi|56379726|dbj|BAD75634.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 157
Score = 36.0 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFF 190
+ +G+K + L F+K +K + G L M SA + + A
Sbjct: 1 MNKGLKTALATIALAQFLKIPIKQLETGR-WDWRLFFETGGMPSSHSAGVSALATFIALE 59
Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
+ + L + L V+ + +L + E+ +E+K+ G+P K
Sbjct: 60 RGVRTIDFALAALFGLIVMYDAQGVRRQAGELALRLNELAEEVKKLEGDPKQTVYHKRQR 119
Query: 251 RSRIR 255
+ R R
Sbjct: 120 QLRAR 124
>gi|312602165|ref|YP_004022010.1| MFS superfamily transporter [Burkholderia rhizoxinica HKI 454]
gi|312169479|emb|CBW76491.1| Transporter, MFS superfamily [Burkholderia rhizoxinica HKI 454]
Length = 564
Score = 36.0 bits (82), Expect = 9.9, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 63/201 (31%), Gaps = 25/201 (12%)
Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
+ +S+ A LL F+ G V + L +++ I ++ +L + S+ +S
Sbjct: 334 LTSIASLAAGFTALLSLFNIGGRFVWASLS---DKFGRKQTYTIFFVLGMLLYASIPSSI 390
Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
+L + + L + ++ + +
Sbjct: 391 TAGYLILFVVAVCVIVSLYGGGFSTVP-------------AYLADLFGTQFVGAIHGRLL 437
Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
I+ + + + + + + +L++ L+ + +
Sbjct: 438 TAWATAGILGPVVVNYMRDYQLALGLPREQVYNQSMYILVGMLLVGLVCNLLIKPV---- 493
Query: 214 SYHQWYSKLKMSKQEIKDEIK 234
+ K MS+QE+ +E +
Sbjct: 494 -----HPKYFMSEQELAEEKR 509
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.316 0.154 0.459
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,543,169,270
Number of Sequences: 14124377
Number of extensions: 227754481
Number of successful extensions: 1072030
Number of sequences better than 10.0: 3712
Number of HSP's better than 10.0 without gapping: 2221
Number of HSP's successfully gapped in prelim test: 1491
Number of HSP's that attempted gapping in prelim test: 1066486
Number of HSP's gapped (non-prelim): 4164
length of query: 354
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 214
effective length of database: 2,865,380,850
effective search space: 613191501900
effective search space used: 613191501900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.0 bits)