RPSBLAST alignment for GI: 254780690 and conserved domain: TIGR00328
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. Length = 347
Score = 293 bits (753), Expect = 4e-80
Identities = 118/344 (34%), Positives = 197/344 (57%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK+ A EGN P SRE + + +LA ++ L FF G+ + L S
Sbjct: 2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVL-SLLFFGDGLADLLVVLMSFFLSF 60
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ ++ +V + L++P +L ++ G+ S + Q + +KP F +
Sbjct: 61 ETSDILNLGSLVGIFFQSIREVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSK 120
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ +G+KR++S+ +LV +KS +K+ LV + L + +L + + +
Sbjct: 121 INPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSLGELLSLSLYSLVQAITNFL 180
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +LI++LL + + V D + Q+ LKM+KQE+KDE+KQS G+P +K R + +
Sbjct: 181 DIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R R +MM+ +A ++ITNPTHYA+AL+Y + APV+VAKG + +A K+++IA E
Sbjct: 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARE 300
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+N+PI E P LAR+L++QV I IPP YKAVA+++ +Y K
Sbjct: 301 NNVPIVENPPLARALYRQVEIGQEIPPELYKAVAEVLAYVYKLK 344