RPSBLAST alignment for GI: 254780690 and conserved domain: PRK09108

>gnl|CDD|181653 PRK09108, PRK09108, type III secretion system protein HrcU; Validated. Length = 353
 Score =  167 bits (425), Expect = 4e-42
 Identities = 98/353 (27%), Positives = 172/353 (48%), Gaps = 37/353 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           D KTE P+ KK++DA  +G    S +    A L +++L          +     +   L 
Sbjct: 3   DEKTEEPTEKKLKDARKDGEVAKSPDLTAAAVLLAALL--------VLTAAGSYLGDHLR 54

Query: 64  VLLASA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            L+ +A      +R L+ +      L H    A  L++P +    + GI     Q    +
Sbjct: 55  ALVRTALDFVSGERSLQALLA---ALHHFGAQALLLMLPFVAAAALAGILGTAPQTGLQI 111

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +L  V P F  ++   G+K+I+S+ +L+  +K  VK +++  ++   +T    +++  I 
Sbjct: 112 SLKPVMPKFDALNPAAGLKKIFSLRSLIELVKMIVKAVVIAAVLWKGIT----SLMPLIV 167

Query: 179 ANPHSILYHAFFTVRKVL---IMILLFIATLTVLDIG---WSYHQWY--SKLKMSKQEIK 230
                  Y +   + ++L   +M LL +A    L +G   W   +W      +MSK E+K
Sbjct: 168 ----GAAYQSPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVK 223

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K+S G+P IK  +K +AR        +  +RA +++ NPTHYA+ALRY   E+  P 
Sbjct: 224 REHKESEGDPHIKGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALRYAPDEHPLPR 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           ++AKG +  A  +R+ A+   IPI   P +AR+L++ V ++  IP   ++ VA
Sbjct: 284 VIAKGVDDGALALRRHAHALGIPIVGNPPVARALYR-VELDEPIPEELFETVA 335