RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
         (354 letters)



>gnl|CDD|31567 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 363

 Score =  306 bits (785), Expect = 6e-84
 Identities = 129/352 (36%), Positives = 207/352 (58%), Gaps = 1/352 (0%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +++ A D KTE P+ KK+ DA  +G  P SRE +  +S+L   + L FF S     ++  
Sbjct: 1   ADDMADDEKTEKPTPKKLRDAREKGQVPKSRELTSAASLLVGFLLLFFFGSYFARRLSGF 60

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L   L       L+D S  + L+  L L   + ++P LL+ ++ G+ + ++Q   + +  
Sbjct: 61  LRAFLEFPESMDLDDES-ALELIKALLLEILKALLPFLLVLLVVGLLANILQVGFLFSTE 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP F +++  +G+KRI+S+  LV  +KS +KI+LVG +    L  +   +L     +P
Sbjct: 120 ALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVLVGLVAYFVLKNHLSELLSLAGQSP 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + L      + K+L+ +LL +  +   D  +   Q+  KLKM+KQE+KDE KQS G+P 
Sbjct: 180 VAALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGDPE 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K+R + + R   R +MM    +A ++ITNPTHYA+AL+Y   +  APV+VAKG +L+A 
Sbjct: 240 VKSRIRQMQREIARRRMMSDVPKADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVAL 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K+R+IA EH IPI E P LAR+L++QV +   IP   YKAVA+++  +Y  K
Sbjct: 300 KIREIAKEHGIPIIENPPLARALYRQVEVGQQIPEELYKAVAEVLAYVYQLK 351


>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family.  This family
           includes the following members: FlhB, HrpN, YscU, SpaS,
           HrcU SsaU and YopU. All of these proteins export
           peptides using the type III secretion system. The
           peptides exported are quite diverse.
          Length = 343

 Score =  267 bits (685), Expect = 3e-72
 Identities = 113/348 (32%), Positives = 195/348 (56%), Gaps = 10/348 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS----VTSDL 62
            + KTE P+ KK+ DA  +G  P S++ +  +S+LA   YL    S         +   L
Sbjct: 2   SEEKTEKPTPKKLRDARKKGQVPKSQDLTSAASLLAGSAYLFLLGSVFARRLIALLLLTL 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            ++    +    +  S +V LL  + L      +  L + ++ G+ S L+Q   + +   
Sbjct: 62  ILIPLPFSLSVTDLFSLVVLLLLTVLL------LLSLFVALLVGLASNLLQVGFLFSTEA 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP F +++  +G+KRI+S  +LV  +KS +K++ VG I    L  +  T++     +P 
Sbjct: 116 IKPDFSKINPIKGLKRIFSARSLVELLKSILKVVAVGLIFYFFLKNDLGTIVRLPGCSPM 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I+      ++K+L+++LLF+  + +LD  +  + +   LKMSKQE+K E K+S G+P +
Sbjct: 176 GIIVIVMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSKQEVKREYKESEGDPHV 235

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IAR     +MM+   +A +++TNPTHYA+AL Y   E  AP +VAKG++  A  
Sbjct: 236 KGRRRQIAREIASERMMQDVPKADVVVTNPTHYAVALYYDPEEMPAPRIVAKGEDEQALA 295

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +R IA E+ IP+ E P LAR+L++ V +   IP   ++AVA+++  +Y
Sbjct: 296 IRAIAEENGIPVVENPPLARALYRTVEVGQEIPEELFEAVAEVLVWVY 343


>gnl|CDD|34402 COG4792, EscU, Type III secretory pathway, component EscU
           [Intracellular trafficking and secretion].
          Length = 349

 Score =  172 bits (436), Expect = 2e-43
 Identities = 96/337 (28%), Positives = 169/337 (50%), Gaps = 3/337 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE P+ KK+ DA  +G    S+E      +LA + Y + F   G       + +LL + 
Sbjct: 5   KTEQPTPKKLRDARKKGQVVKSKEIVSAVQLLALVAYFMLF---GDSYFEHLVELLLFTI 61

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               L     +  +L  L      LV+P LL+ ++  + S ++Q   +  L  +KP  ++
Sbjct: 62  ELLNLPFSYALRQILGALLEELLYLVLPLLLVVIVATVLSGVLQVGFLFALEAIKPKAEK 121

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  +  KRI+S+ ++V  +KS +K++++  I    L     T L       +  L    
Sbjct: 122 INPVQNAKRIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTFLYLPGCGLYCALPVVS 181

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
           F +R + + + +     +V D  +  +Q   +LKMSK E+K E K   G+P IK++++ +
Sbjct: 182 FLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQL 241

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
                   +     R+T+I+ NPTH A+ LRY + E   P+++ KG +  A ++ KIA E
Sbjct: 242 HSEIQSGSLANNVKRSTVIVKNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEE 301

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             IP+ E   LAR+L++ V +   IP  F++ VA L+
Sbjct: 302 EGIPVVENIPLARALYRDVHVGQYIPEDFFEPVAALL 338


>gnl|CDD|32438 COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain
           of flagellar protein FhlB [Function unknown].
          Length = 92

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + ++ AP +VA G+  IA+K+ + A EH +PI E+P L   L K + +   IP
Sbjct: 10  AVALAYDEGKDKAPKVVASGKGEIAEKIIEKAKEHGVPIQEDPLLVELLLK-LELGDEIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA++   IY 
Sbjct: 69  EELYEVVAEIFAFIYE 84


>gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional.
          Length = 2281

 Score = 28.7 bits (64), Expect = 2.2
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-------DFISAN 180
            R  LRE       I N   F+ S+ +   VG+ I I   +  F  L         +S N
Sbjct: 13  LREILRE-------IKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRN 65

Query: 181 PHSILYHAFFTVRKV-LIMILLFI 203
                 + +FT++ V L+++ + I
Sbjct: 66  SQGSTSNRYFTIKGVVLLVVAVLI 89


>gnl|CDD|147707 pfam05700, BCAS2, Breast carcinoma amplified sequence 2 (BCAS2).
           This family consists of several eukaryotic sequences of
           unknown function. The mammalian members of this family
           are annotated as breast carcinoma amplified sequence 2
           (BCAS2) proteins. BCAS2 is a putative spliceosome
           associated protein.
          Length = 221

 Score = 28.6 bits (64), Expect = 2.4
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRK----IAYEHNIPIFEEP 318
           AL YI  + D P +      L+ ++MR+      Y  ++P  + P
Sbjct: 11  ALPYIDDDYDEPGVREAADALVEEEMRRYRPTKNYLKHLPSLQGP 55


>gnl|CDD|145309 pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32)
           metallopeptidase. 
          Length = 494

 Score = 27.1 bits (60), Expect = 7.1
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 314 IFEEPS-----LARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           I E+ +     + R L +Q  I  +IP  F K V++   K
Sbjct: 73  IVEDLNEDERGVVRVLDRQYEIMKSIPEEFLKEVSETTSK 112


>gnl|CDD|35935 KOG0716, KOG0716, KOG0716, Molecular chaperone (DnaJ superfamily)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 279

 Score = 26.6 bits (58), Expect = 9.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIK-NRQKSIARSRIRHKMMEATSRATIIITNPT 273
           Y  L + K   KDEIK++Y    +K +  K+        K  E  + A  I+++PT
Sbjct: 34  YDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKE-INTAYAILSDPT 88


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,173,923
Number of extensions: 225918
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 51
Length of query: 354
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,210,882
Effective search space: 1090618438
Effective search space used: 1090618438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.3 bits)