RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] (354 letters) >gnl|CDD|31567 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 363 Score = 306 bits (785), Expect = 6e-84 Identities = 129/352 (36%), Positives = 207/352 (58%), Gaps = 1/352 (0%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ A D KTE P+ KK+ DA +G P SRE + +S+L + L FF S ++ Sbjct: 1 ADDMADDEKTEKPTPKKLRDAREKGQVPKSRELTSAASLLVGFLLLFFFGSYFARRLSGF 60 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L L L+D S + L+ L L + ++P LL+ ++ G+ + ++Q + + Sbjct: 61 LRAFLEFPESMDLDDES-ALELIKALLLEILKALLPFLLVLLVVGLLANILQVGFLFSTE 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP F +++ +G+KRI+S+ LV +KS +KI+LVG + L + +L +P Sbjct: 120 ALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVLVGLVAYFVLKNHLSELLSLAGQSP 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L + K+L+ +LL + + D + Q+ KLKM+KQE+KDE KQS G+P Sbjct: 180 VAALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGDPE 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K+R + + R R +MM +A ++ITNPTHYA+AL+Y + APV+VAKG +L+A Sbjct: 240 VKSRIRQMQREIARRRMMSDVPKADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVAL 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH IPI E P LAR+L++QV + IP YKAVA+++ +Y K Sbjct: 300 KIREIAKEHGIPIIENPPLARALYRQVEVGQQIPEELYKAVAEVLAYVYQLK 351 >gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse. Length = 343 Score = 267 bits (685), Expect = 3e-72 Identities = 113/348 (32%), Positives = 195/348 (56%), Gaps = 10/348 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS----VTSDL 62 + KTE P+ KK+ DA +G P S++ + +S+LA YL S + L Sbjct: 2 SEEKTEKPTPKKLRDARKKGQVPKSQDLTSAASLLAGSAYLFLLGSVFARRLIALLLLTL 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 ++ + + S +V LL + L + L + ++ G+ S L+Q + + Sbjct: 62 ILIPLPFSLSVTDLFSLVVLLLLTVLL------LLSLFVALLVGLASNLLQVGFLFSTEA 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP F +++ +G+KRI+S +LV +KS +K++ VG I L + T++ +P Sbjct: 116 IKPDFSKINPIKGLKRIFSARSLVELLKSILKVVAVGLIFYFFLKNDLGTIVRLPGCSPM 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I+ ++K+L+++LLF+ + +LD + + + LKMSKQE+K E K+S G+P + Sbjct: 176 GIIVIVMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSKQEVKREYKESEGDPHV 235 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IAR +MM+ +A +++TNPTHYA+AL Y E AP +VAKG++ A Sbjct: 236 KGRRRQIAREIASERMMQDVPKADVVVTNPTHYAVALYYDPEEMPAPRIVAKGEDEQALA 295 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +R IA E+ IP+ E P LAR+L++ V + IP ++AVA+++ +Y Sbjct: 296 IRAIAEENGIPVVENPPLARALYRTVEVGQEIPEELFEAVAEVLVWVY 343 >gnl|CDD|34402 COG4792, EscU, Type III secretory pathway, component EscU [Intracellular trafficking and secretion]. Length = 349 Score = 172 bits (436), Expect = 2e-43 Identities = 96/337 (28%), Positives = 169/337 (50%), Gaps = 3/337 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE P+ KK+ DA +G S+E +LA + Y + F G + +LL + Sbjct: 5 KTEQPTPKKLRDARKKGQVVKSKEIVSAVQLLALVAYFMLF---GDSYFEHLVELLLFTI 61 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 L + +L L LV+P LL+ ++ + S ++Q + L +KP ++ Sbjct: 62 ELLNLPFSYALRQILGALLEELLYLVLPLLLVVIVATVLSGVLQVGFLFALEAIKPKAEK 121 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ + KRI+S+ ++V +KS +K++++ I L T L + L Sbjct: 122 INPVQNAKRIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTFLYLPGCGLYCALPVVS 181 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 F +R + + + + +V D + +Q +LKMSK E+K E K G+P IK++++ + Sbjct: 182 FLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQL 241 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 + R+T+I+ NPTH A+ LRY + E P+++ KG + A ++ KIA E Sbjct: 242 HSEIQSGSLANNVKRSTVIVKNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEE 301 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ E LAR+L++ V + IP F++ VA L+ Sbjct: 302 EGIPVVENIPLARALYRDVHVGQYIPEDFFEPVAALL 338 >gnl|CDD|32438 COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]. Length = 92 Score = 73.0 bits (179), Expect = 1e-13 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++ AP +VA G+ IA+K+ + A EH +PI E+P L L K + + IP Sbjct: 10 AVALAYDEGKDKAPKVVASGKGEIAEKIIEKAKEHGVPIQEDPLLVELLLK-LELGDEIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA++ IY Sbjct: 69 EELYEVVAEIFAFIYE 84 >gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional. Length = 2281 Score = 28.7 bits (64), Expect = 2.2 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%) Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-------DFISAN 180 R LRE I N F+ S+ + VG+ I I + F L +S N Sbjct: 13 LREILRE-------IKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRN 65 Query: 181 PHSILYHAFFTVRKV-LIMILLFI 203 + +FT++ V L+++ + I Sbjct: 66 SQGSTSNRYFTIKGVVLLVVAVLI 89 >gnl|CDD|147707 pfam05700, BCAS2, Breast carcinoma amplified sequence 2 (BCAS2). This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein. Length = 221 Score = 28.6 bits (64), Expect = 2.4 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRK----IAYEHNIPIFEEP 318 AL YI + D P + L+ ++MR+ Y ++P + P Sbjct: 11 ALPYIDDDYDEPGVREAADALVEEEMRRYRPTKNYLKHLPSLQGP 55 >gnl|CDD|145309 pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase. Length = 494 Score = 27.1 bits (60), Expect = 7.1 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%) Query: 314 IFEEPS-----LARSLFKQVPINSAIPPVFYKAVAQLIYK 348 I E+ + + R L +Q I +IP F K V++ K Sbjct: 73 IVEDLNEDERGVVRVLDRQYEIMKSIPEEFLKEVSETTSK 112 >gnl|CDD|35935 KOG0716, KOG0716, KOG0716, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 279 Score = 26.6 bits (58), Expect = 9.6 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIK-NRQKSIARSRIRHKMMEATSRATIIITNPT 273 Y L + K KDEIK++Y +K + K+ K E + A I+++PT Sbjct: 34 YDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKE-INTAYAILSDPT 88 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.324 0.137 0.389 Gapped Lambda K H 0.267 0.0656 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,173,923 Number of extensions: 225918 Number of successful extensions: 1046 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1037 Number of HSP's successfully gapped: 51 Length of query: 354 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 259 Effective length of database: 4,210,882 Effective search space: 1090618438 Effective search space used: 1090618438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.3 bits)