RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
         (354 letters)



>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins
           EscU {Escherichia coli [TaxId: 562]}
          Length = 100

 Score =  113 bits (284), Expect = 2e-26
 Identities = 31/93 (33%), Positives = 52/93 (55%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+
Sbjct: 4   LANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIED 63

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             LARSL K +     I   F++ VAQLI    
Sbjct: 64  IPLARSLDKNIHKGQYITEDFFEPVAQLIRIAI 96


>g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of
           antigens protein SpaS {Salmonella typhimurium [TaxId:
           90371]}
          Length = 108

 Score =  109 bits (275), Expect = 3e-25
 Identities = 20/96 (20%), Positives = 39/96 (40%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
             ++      + +I+ NPTH  + + +       P++     N  A  +R  A +  +P+
Sbjct: 4   SEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPV 63

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +  LARSLFK       +       V +L+  + 
Sbjct: 64  IVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLE 99


>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of
           antigens protein SpaS {Shigella flexneri [TaxId: 623]}
          Length = 102

 Score =  109 bits (275), Expect = 3e-25
 Identities = 24/96 (25%), Positives = 39/96 (40%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
             +       + +++ NPTH A+ + +      AP +     N  A  +RK A E  IP 
Sbjct: 5   SEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPT 64

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +  LAR L+K     S +       V +LI  + 
Sbjct: 65  VRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLE 100


>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase  alpha chain, AcdA,
           domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 163

 Score = 27.8 bits (61), Expect = 1.3
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
              +     +  N+ PVL       +++K +++  ++ IP +E P   
Sbjct: 100 AEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDV 147


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 274

 Score = 27.4 bits (61), Expect = 1.6
 Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRA--TIIITNPTHYALALRYIQT 284
            +KQ+     +K    +     +  K   A         +T P    L++ +   
Sbjct: 172 AVKQTISRSAVKCLSPAKRGRLLTEKTAFALQNKDKVKPLTPPDRPVLSIEFANY 226


>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 190

 Score = 27.0 bits (60), Expect = 2.1
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 270 TNPTHYALALRYIQTEND-APVL----VAKGQNLIAKKMRKIAYE 309
             P H    L+++  + +  P+L         +L  K+ +K   +
Sbjct: 11  RRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLD 55


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 98

 Score = 25.3 bits (55), Expect = 8.8
 Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 204 ATLTVLD-IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ---KSIARSRIRHKMM 259
           A L+ +  + W+    +  + M+     +++K+ Y   ++             +    + 
Sbjct: 20  ALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIF 79

Query: 260 EATSRATIIITNP 272
              + A     N 
Sbjct: 80  MELNDAWSEFENQ 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,252,850
Number of extensions: 57591
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 22
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)