Query gi|254780691|ref|YP_003065104.1| hypothetical protein CLIBASIA_02890 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 55 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:30:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780691.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1au1_A Interferon-beta; helic 28.7 43 0.0013 15.6 2.5 21 34-54 119-139 (166) 2 >1wu3_I Interferon beta, IFN-b 25.9 52 0.0015 15.2 2.5 21 34-54 114-134 (161) 3 >1b5l_A Interferon TAU; cytoki 25.4 53 0.0016 15.1 2.5 21 34-54 117-137 (172) 4 >1rh2_A Interferon-alpha 2B; c 18.3 76 0.0023 14.2 2.1 20 35-54 117-136 (165) 5 >1cmk_I CAMP-dependent protein 9.4 1.1E+02 0.0034 13.3 0.9 14 9-22 11-24 (26) 6 >1hm6_A Annexin 1; phospholipi 8.7 78 0.0023 14.2 -0.2 22 24-50 23-46 (79) 7 >2h7g_X DNA topoisomerase 1; t 8.3 45 0.0013 15.5 -1.6 23 19-47 25-47 (69) 8 >1x9m_A DNA polymerase; DNA pl 8.2 1.4E+02 0.0042 12.8 1.0 23 29-53 4-27 (56) 9 >1zl9_A GST class-sigma, gluta 7.9 1.6E+02 0.0048 12.5 1.1 21 35-55 29-49 (56) 10 >3e2c_A Bacterioferritin; DIIR 7.5 1.7E+02 0.0049 12.4 1.1 15 28-42 63-77 (84) No 1 >>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} (A:) Probab=28.67 E-value=43 Score=15.61 Aligned_cols=21 Identities=38% Similarity=0.819 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHC Q ss_conf 112999999999999776404 Q gi|254780691|r 34 NIGLQRYYKRVKTVIRAKKYQ 54 (55) Q Consensus 34 niglqryykrvktvirakkyq 54 (55) +..+.+||.|.......|+|- T Consensus 119 ~l~lkkYF~ri~~yLk~K~yS 139 (166) T 1au1_A 119 SLHLKRYYGRILHYLKAKEYS 139 (166) T ss_dssp HHHHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 279999998999998658997 No 2 >>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} (I:) Probab=25.85 E-value=52 Score=15.17 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHC Q ss_conf 112999999999999776404 Q gi|254780691|r 34 NIGLQRYYKRVKTVIRAKKYQ 54 (55) Q Consensus 34 niglqryykrvktvirakkyq 54 (55) +.-+.+||.|.....+.|+|- T Consensus 114 ~l~lkkYF~rI~~yLk~K~yS 134 (161) T 1wu3_I 114 ALHLKSYYWRVQRYLKLMKYN 134 (161) T ss_dssp HHHHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 369999999999998727997 No 3 >>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} (A:) Probab=25.36 E-value=53 Score=15.09 Aligned_cols=21 Identities=14% Similarity=0.523 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHC Q ss_conf 112999999999999776404 Q gi|254780691|r 34 NIGLQRYYKRVKTVIRAKKYQ 54 (55) Q Consensus 34 niglqryykrvktvirakkyq 54 (55) +..+.+||.|.......|+|- T Consensus 117 ~l~lkkYF~rI~~yLk~K~yS 137 (172) T 1b5l_A 117 IVTVKKYFQGIYDYLQEKGYS 137 (172) T ss_dssp HHHHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 479999999999999857997 No 4 >>1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix bundle; 2.90A {Homo sapiens} (A:) Probab=18.28 E-value=76 Score=14.25 Aligned_cols=20 Identities=25% Similarity=0.818 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 12999999999999776404 Q gi|254780691|r 35 IGLQRYYKRVKTVIRAKKYQ 54 (55) Q Consensus 35 iglqryykrvktvirakkyq 54 (55) ..+.+||.|.......|+|- T Consensus 117 L~lk~YF~rI~~yLk~K~yS 136 (165) T 1rh2_A 117 LAVRKYFQRITLYLKEKKYS 136 (165) T ss_pred HHHHHHHHHHHHHHHHCCCC T ss_conf 89999999999998738997 No 5 >>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens} (I:) Probab=9.42 E-value=1.1e+02 Score=13.28 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 56545569999975 Q gi|254780691|r 9 RTSHVRGVHDILLR 22 (55) Q Consensus 9 rtshvrgvhdillr 22 (55) ||..-..+||||.. T Consensus 11 rtgrrnaihdil~~ 24 (26) T 1cmk_I 11 RTGRRNAIHDILXX 24 (26) T ss_pred CCCCHHHHHHHHHC T ss_conf 75425579998860 No 6 >>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} (A:17-35,A:273-332) Probab=8.72 E-value=78 Score=14.18 Aligned_cols=22 Identities=59% Similarity=0.764 Sum_probs=14.1 Q ss_pred HHHH-H-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6889-7-6323311299999999999977 Q gi|254780691|r 24 SFFL-K-LQNMKNIGLQRYYKRVKTVIRA 50 (55) Q Consensus 24 sffl-k-lqnmkniglqryykrvktvira 50 (55) -||. | -|.||.||. |-||.||. T Consensus 23 mffaeklhqamkgigt-----rhktliri 46 (79) T 1hm6_A 23 MFFAEKLHQAMKGIGT-----RHKTLIRI 46 (79) T ss_dssp HHHHHHHHHHHSSSSC-----CHHHHHHH T ss_pred HHHHHHHHHHHCCCCC-----CCHHHHHH T ss_conf 8999999999607687-----73699999 No 7 >>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 1a41_A (X:97-146,X:198-216) Probab=8.32 E-value=45 Score=15.50 Aligned_cols=23 Identities=35% Similarity=0.765 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99755688976323311299999999999 Q gi|254780691|r 19 ILLRSSFFLKLQNMKNIGLQRYYKRVKTV 47 (55) Q Consensus 19 illrssfflklqnmkniglqryykrvktv 47 (55) .|+..|||.. +|--||+|.-.|| T Consensus 25 mLmETsFfIR------~GK~~Y~ken~TV 47 (69) T 2h7g_X 25 MLMETMFFIR------FGKMKYLKENETV 47 (69) T ss_dssp HHHHHHHCCC------CCCHHHHHHHCCC T ss_pred HHHHHHHCEE------CCCCCCCCCCCCC T ss_conf 9999862452------5881011026873 No 8 >>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} (A:498-553) Probab=8.23 E-value=1.4e+02 Score=12.76 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=16.8 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH Q ss_conf 632331129-9999999999977640 Q gi|254780691|r 29 LQNMKNIGL-QRYYKRVKTVIRAKKY 53 (55) Q Consensus 29 lqnmknigl-qryykrvktvirakky 53 (55) ..|++.+|+ .| +.+||+|-|--| T Consensus 4 t~N~~~~Gl~sR--~~aKT~iYaflY 27 (56) T 1x9m_A 4 TKNQIAAELPTR--DNAKTFIYGFLY 27 (56) T ss_dssp HHHHHHSCCSSH--HHHHHHHHHHHT T ss_pred CCCHHHHCCCCC--HHHHHHHHHHHC T ss_conf 331555244542--177777788741 No 9 >>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GTT; 2.01A {Caenorhabditis elegans} (A:152-207) Probab=7.88 E-value=1.6e+02 Score=12.46 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCC Q ss_conf 129999999999997764049 Q gi|254780691|r 35 IGLQRYYKRVKTVIRAKKYQE 55 (55) Q Consensus 35 iglqryykrvktvirakkyqe 55 (55) -.|+.++.||...-+-|+|.+ T Consensus 29 P~L~~~~~rv~~~P~Ik~yl~ 49 (56) T 1zl9_A 29 PELKAHAEKIQAIPQIKKWIE 49 (56) T ss_dssp HHHHHHHHHHHHSHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHH T ss_conf 799999999985999999999 No 10 >>3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme, iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli} PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* (A:75-158) Probab=7.54 E-value=1.7e+02 Score=12.41 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 763233112999999 Q gi|254780691|r 28 KLQNMKNIGLQRYYK 42 (55) Q Consensus 28 klqnmkniglqryyk 42 (55) .+..++.+|+|.|-. T Consensus 63 ql~lI~~~G~~nYl~ 77 (84) T 3e2c_A 63 ELDLIQKMGLQNYLQ 77 (84) T ss_dssp HHHHHHHHCHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999977898999 Done!