Query gi|254780691|ref|YP_003065104.1| hypothetical protein CLIBASIA_02890 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:04:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780691.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1au1a_ a.26.1.3 (A:) Interfer 24.4 23 0.0017 15.0 2.6 21 34-54 119-139 (166)
2 d1b5la_ a.26.1.3 (A:) Interfer 20.6 27 0.002 14.5 2.4 20 35-54 118-137 (164)
3 d1r5aa1 a.45.1.1 (A:87-215) Cl 19.2 23 0.0016 15.0 1.6 20 36-55 94-113 (129)
4 d1wu3i_ a.26.1.3 (I:) Interfer 11.2 50 0.0036 13.1 2.5 20 35-54 115-134 (161)
5 d1ljra1 a.45.1.1 (A:80-244) Cl 11.2 46 0.0034 13.3 1.4 40 15-54 84-128 (165)
6 d1kj6a_ g.9.1.1 (A:) Beta-defe 10.2 19 0.0014 15.4 -0.8 10 36-45 5-14 (45)
7 d2fkza1 a.25.1.1 (A:1-154) Bac 8.5 57 0.0042 12.8 1.1 14 28-41 137-150 (154)
8 d2dlqa4 g.37.1.1 (A:8-34) GLI- 7.0 71 0.0052 12.3 1.0 15 22-36 11-25 (27)
9 d2htna1 a.25.1.1 (A:1-158) Bac 6.3 81 0.0059 12.0 1.1 14 28-41 137-150 (158)
10 d1q8ha_ g.32.1.1 (A:) Osteocal 4.9 1E+02 0.0073 11.5 1.3 12 33-44 22-33 (37)
No 1
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.42 E-value=23 Score=14.97 Aligned_cols=21 Identities=38% Similarity=0.819 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 112999999999999776404
Q gi|254780691|r 34 NIGLQRYYKRVKTVIRAKKYQ 54 (55)
Q Consensus 34 niglqryykrvktvirakkyq 54 (55)
...+.+||.|.......|+|-
T Consensus 119 ~l~lk~YF~rI~~yLk~K~YS 139 (166)
T d1au1a_ 119 SLHLKRYYGRILHYLKAKEYS 139 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 279999998999999748998
No 2
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=20.55 E-value=27 Score=14.53 Aligned_cols=20 Identities=15% Similarity=0.595 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 12999999999999776404
Q gi|254780691|r 35 IGLQRYYKRVKTVIRAKKYQ 54 (55)
Q Consensus 35 iglqryykrvktvirakkyq 54 (55)
..+.+||.|.......|+|-
T Consensus 118 l~lk~YF~rI~~yLk~K~yS 137 (164)
T d1b5la_ 118 VTVKKYFQGIYDYLQEKGYS 137 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 79999999999999857998
No 3
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}
Probab=19.21 E-value=23 Score=14.99 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 29999999999997764049
Q gi|254780691|r 36 GLQRYYKRVKTVIRAKKYQE 55 (55)
Q Consensus 36 glqryykrvktvirakkyqe 55 (55)
.|++||.|++.....+.|+|
T Consensus 94 ~l~~w~~r~~~~~~~~~~~e 113 (129)
T d1r5aa1 94 RVRAWLLKCKDELEGHGYKE 113 (129)
T ss_dssp HHHHHHHHHHHHHGGGTHHH
T ss_pred HHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999981105865899
No 4
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.19 E-value=50 Score=13.14 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 12999999999999776404
Q gi|254780691|r 35 IGLQRYYKRVKTVIRAKKYQ 54 (55)
Q Consensus 35 iglqryykrvktvirakkyq 54 (55)
..+.+||.|.......|+|-
T Consensus 115 L~lkkYF~rI~~yLk~K~YS 134 (161)
T d1wu3i_ 115 LHLKSYYWRVQRYLKLMKYN 134 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 79999999999998727998
No 5
>d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.16 E-value=46 Score=13.31 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 699999755688-9763233----112999999999999776404
Q gi|254780691|r 15 GVHDILLRSSFF-LKLQNMK----NIGLQRYYKRVKTVIRAKKYQ 54 (55)
Q Consensus 15 gvhdillrssff-lklqnmk----niglqryykrvktvirakkyq 54 (55)
.+-||.+-+.+. +...+.. --.|++||.|++...-.+.||
T Consensus 84 SlADi~~~~~l~~~~~~~~~~~~~yP~l~aW~~r~~a~~~~~~~~ 128 (165)
T d1ljra1 84 TLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQ 128 (165)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 475999999999999829987656989999999999555864489
No 6
>d1kj6a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD3 [TaxId: 9606]}
Probab=10.19 E-value=19 Score=15.40 Aligned_cols=10 Identities=60% Similarity=1.062 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q ss_conf 2999999999
Q gi|254780691|r 36 GLQRYYKRVK 45 (55)
Q Consensus 36 glqryykrvk 45 (55)
.|||||-||.
T Consensus 5 ~lqryyCriR 14 (45)
T d1kj6a_ 5 TLQKYYCRVR 14 (45)
T ss_dssp CCTTTHHHHH
T ss_pred HHHHHHEEEC
T ss_conf 5566631444
No 7
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=8.53 E-value=57 Score=12.80 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 76323311299999
Q gi|254780691|r 28 KLQNMKNIGLQRYY 41 (55)
Q Consensus 28 klqnmkniglqryy 41 (55)
.|.+++++|.|+|-
T Consensus 137 ~L~~~~~~g~~~yl 150 (154)
T d2fkza1 137 QLDLIDKIGLENYL 150 (154)
T ss_dssp HHHHHHHHCHHHHH
T ss_pred HHHHHHHHCHHHHH
T ss_conf 99999985878899
No 8
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.00 E-value=71 Score=12.29 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 556889763233112
Q gi|254780691|r 22 RSSFFLKLQNMKNIG 36 (55)
Q Consensus 22 rssfflklqnmknig 36 (55)
.|.++||..|-+..|
T Consensus 11 ~skyylkvhnr~htg 25 (27)
T d2dlqa4 11 LSKYYLKVHNRKHTG 25 (27)
T ss_dssp SSHHHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 876755310345557
No 9
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=6.34 E-value=81 Score=11.97 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 76323311299999
Q gi|254780691|r 28 KLQNMKNIGLQRYY 41 (55)
Q Consensus 28 klqnmkniglqryy 41 (55)
.|.++.++|+++|-
T Consensus 137 ~L~~~~~~g~~~yl 150 (158)
T d2htna1 137 ELDLIQKMGLQNYL 150 (158)
T ss_dssp HHHHHHHHCHHHHH
T ss_pred HHHHHHHHCHHHHH
T ss_conf 99999987788899
No 10
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.89 E-value=1e+02 Score=11.46 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 311299999999
Q gi|254780691|r 33 KNIGLQRYYKRV 44 (55)
Q Consensus 33 kniglqryykrv 44 (55)
..||+|.-|+|.
T Consensus 22 d~igfqeayrrf 33 (37)
T d1q8ha_ 22 DHIGFQEAYRRF 33 (37)
T ss_dssp HHHCHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 875489999998
Done!