Query         gi|254780692|ref|YP_003065105.1| hypothetical protein CLIBASIA_02895 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 72
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 16:35:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780692.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3drz_A BTB/POZ domain-containi  16.0      62  0.0026   14.0   2.7   49    6-62     58-106 (107)
  2 1v54_J Cytochrome C oxidase po  14.7      66  0.0028   13.8   1.9   18    4-21     40-57  (59)
  3 2ys8_A RAB-related GTP-binding   8.7 1.1E+02  0.0046   12.7   1.7   15   54-68     74-88  (90)
  4 1xrs_B D-lysine 5,6-aminomutas   5.5 1.1E+02  0.0046   12.7   0.0   18   20-38      6-23  (262)
  5 3faj_A ORF131, putative unchar   4.4 1.9E+02  0.0082   11.4   2.7   53    2-65     30-84  (151)
  6 3c01_A Surface presentation of   3.4 2.4E+02    0.01   10.9   0.9   16   56-71      6-21  (48)
  7 2w8a_A Glycine betaine transpo   3.4 2.4E+02    0.01   10.9   6.5   22    4-25    495-516 (566)
  8 2czr_A TBP-interacting protein   3.3 1.9E+02  0.0082   11.4  -0.1   18    2-19    129-146 (226)
  9 3bzy_A ESCU; auto cleavage pro   3.1 2.6E+02   0.011   10.8   0.9   16   56-71     12-27  (54)
 10 3l15_A Transcriptional enhance   2.6 2.1E+02   0.009   11.2  -0.5   21   13-33    164-184 (231)

No 1  
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unknown function; 1.90A {Homo sapiens}
Probab=15.95  E-value=62  Score=13.96  Aligned_cols=49  Identities=24%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             899999999983132567877888773368877338987303245566999999875
Q gi|254780692|r    6 GIIFTIICLYMMNGYQKEKKDIERTRLNIERTRLTCEEARHTQDENLTKACKDELKN   62 (72)
Q Consensus         6 giiftiiclymmngyqkekkdiertrlniertrltceearhtqdenltkackdelkn   62 (72)
                      +-+|..|--|+-.|--....++       ...+| .+||+--+=+.|.+.|++.++.
T Consensus        58 p~~F~~IL~ylr~g~l~~~~~~-------~~~~L-l~eA~yy~l~~L~~~~~~~l~~  106 (107)
T 3drz_A           58 PTYFGPVLNYLRHGKLVINKDL-------AEEGV-LEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTTS-------CHHHH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCCHH-------HHHHH-HHHHHHCCCHHHHHHHHHHHHC
T ss_conf             8899999999807985898300-------18889-9999886988999999999855


No 2  
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* 3ag3_J* ...
Probab=14.68  E-value=66  Score=13.81  Aligned_cols=18  Identities=28%  Similarity=0.587  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHCCHH
Q ss_conf             778999999999831325
Q gi|254780692|r    4 LGGIIFTIICLYMMNGYQ   21 (72)
Q Consensus         4 lggiiftiiclymmngyq   21 (72)
                      ++|+++.+.+|||+.-..
T Consensus        40 v~Gt~~~~~~l~~as~Pk   57 (59)
T 1v54_J           40 LGGTLYSLYCLGWASFPH   57 (59)
T ss_dssp             HHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             998999999999986779


No 3  
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.72  E-value=1.1e+02  Score=12.69  Aligned_cols=15  Identities=53%  Similarity=0.589  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHCCHH
Q ss_conf             999999875102867
Q gi|254780692|r   54 KACKDELKNIKSNPK   68 (72)
Q Consensus        54 kackdelkniksnpk   68 (72)
                      .|-..-||||||.|.
T Consensus        74 nartallkniksgps   88 (90)
T 2ys8_A           74 NARTALLKNIKSGPS   88 (90)
T ss_dssp             HHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999985235889


No 4  
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=5.47  E-value=1.1e+02  Score=12.70  Aligned_cols=18  Identities=39%  Similarity=0.846  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             2567877888773368877
Q gi|254780692|r   20 YQKEKKDIERTRLNIERTR   38 (72)
Q Consensus        20 yqkekkdiertrlniertr   38 (72)
                      |+-|||++|+| +++.|.|
T Consensus         6 ~~~e~k~~~k~-~~~~~ik   23 (262)
T 1xrs_B            6 YSMEKKEFDKV-LDLERVK   23 (262)
T ss_dssp             -------------------
T ss_pred             CCCCHHHHHHH-CCHHHCC
T ss_conf             33004335554-2365515


No 5  
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural protein, DNA-binding protein; 1.70A {Acidianus two-tailed virus}
Probab=4.43  E-value=1.9e+02  Score=11.39  Aligned_cols=53  Identities=25%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHC
Q ss_conf             2577899999999983132567877888773368877338987--303245566999999875102
Q gi|254780692|r    2 EFLGGIIFTIICLYMMNGYQKEKKDIERTRLNIERTRLTCEEA--RHTQDENLTKACKDELKNIKS   65 (72)
Q Consensus         2 eflggiiftiiclymmngyqkekkdiertrlniertrltceea--rhtqdenltkackdelkniks   65 (72)
                      ++.||.+ .|.-.||-+-|--          -.-.-||+-|||  +.+-+||+..+...-+|-|+.
T Consensus        30 dYagg~i-kIL~~f~sg~~gy----------P~vSLRLaGeEAn~~~sG~e~~k~~IHemiK~I~E   84 (151)
T 3faj_A           30 DYAGGAV-KILDMFENGQLGY----------PEVTLKLAGEEANARRAGDERTKEAIHAIVKMISD   84 (151)
T ss_dssp             CHHHHHH-HHHHHHHTTCCEE----------THHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHCCCCCC----------CEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             3788999-9999997587788----------63453213303202120147899999999999999


No 6  
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=3.44  E-value=2.4e+02  Score=10.93  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=8.7

Q ss_pred             HHHHHHHHHCCHHHHC
Q ss_conf             9999875102867631
Q gi|254780692|r   56 CKDELKNIKSNPKEKA   71 (72)
Q Consensus        56 ckdelkniksnpkeka   71 (72)
                      -|||.|.-..+|.-|+
T Consensus         6 vK~E~Ke~EGdP~vK~   21 (48)
T 3c01_A            6 VKREMKEQEGNPEVKS   21 (48)
T ss_pred             HHHHHHHCCCCHHHHH
T ss_conf             9999986419999999


No 7  
>2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor, trimer, membrane, cell membrane, membrane protein; 3.35A {Corynebacterium glutamicum} PDB: 2wit_A
Probab=3.37  E-value=2.4e+02  Score=10.89  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             7789999999998313256787
Q gi|254780692|r    4 LGGIIFTIICLYMMNGYQKEKK   25 (72)
Q Consensus         4 lggiiftiiclymmngyqkekk   25 (72)
                      ++|+-|.+|.+.|+-+.-|+-+
T Consensus       495 i~alPf~~i~~l~~~sl~K~l~  516 (566)
T 2w8a_A          495 VAATPFLFVVIGLMFALVKDLS  516 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998899999999999999998


No 8  
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} SCOP: c.52.4.1
Probab=3.31  E-value=1.9e+02  Score=11.40  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             257789999999998313
Q gi|254780692|r    2 EFLGGIIFTIICLYMMNG   19 (72)
Q Consensus         2 eflggiiftiiclymmng   19 (72)
                      |+|||-...-|---|+||
T Consensus       129 EYLGgrlieHiK~nm~~G  146 (226)
T 2czr_A          129 EYLGAALVNHIKNNALAG  146 (226)
T ss_dssp             EECHHHHHHHHHTTCCBT
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             885379999987365457


No 9  
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=3.14  E-value=2.6e+02  Score=10.77  Aligned_cols=16  Identities=38%  Similarity=0.513  Sum_probs=9.5

Q ss_pred             HHHHHHHHHCCHHHHC
Q ss_conf             9999875102867631
Q gi|254780692|r   56 CKDELKNIKSNPKEKA   71 (72)
Q Consensus        56 ckdelkniksnpkeka   71 (72)
                      -|||.|.-..+|.-|+
T Consensus        12 vKdE~Ke~EGdP~vK~   27 (54)
T 3bzy_A           12 VKREAKDTDGNPEIKG   27 (54)
T ss_pred             HHHHHHHCCCCHHHHH
T ss_conf             9999986529999999


No 10 
>3l15_A Transcriptional enhancer factor TEF-4; activator, DNA-binding, nucleus, transcriptio regulation; HET: MSE GOL; 2.00A {Homo sapiens}
Probab=2.62  E-value=2.1e+02  Score=11.18  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=0.0

Q ss_pred             HHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999831325678778887733
Q gi|254780692|r   13 CLYMMNGYQKEKKDIERTRLN   33 (72)
Q Consensus        13 clymmngyqkekkdiertrln   33 (72)
                      |-||.|.-+|-|+--|+--+|
T Consensus       164 CeYminFi~kLk~LpekymMN  184 (231)
T 3l15_A          164 CEYLVNFLHKLRQLPERYMMN  184 (231)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHH
T ss_conf             999999999874377888898


Done!