Query gi|254780692|ref|YP_003065105.1| hypothetical protein CLIBASIA_02895 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 72
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:31:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780692.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q66a1 a.160.1.1 (A:202-351) 9.2 47 0.0034 13.4 0.8 20 1-20 27-46 (150)
2 d1q79a1 a.160.1.1 (A:215-364) 8.7 57 0.0042 12.9 1.1 20 1-20 27-46 (150)
3 d1v54j_ f.23.4.1 (J:) Mitochon 6.8 78 0.0057 12.2 2.2 15 4-18 40-54 (58)
4 d2uube1 d.14.1.1 (E:74-154) Ri 3.0 1.5E+02 0.011 10.7 2.1 23 48-71 54-76 (81)
5 d1mtyd_ a.25.1.2 (D:) Methane 2.3 1.9E+02 0.014 10.2 0.6 15 37-51 124-138 (512)
6 d1flma_ b.45.1.1 (A:) FMN-bind 2.1 2E+02 0.014 10.1 -0.1 10 59-68 54-63 (122)
7 d3d1ma1 d.65.1.2 (A:41-188) So 2.0 2.1E+02 0.015 10.0 0.8 20 45-64 52-71 (148)
8 d1b89a_ a.118.1.3 (A:) Clathri 1.9 2.3E+02 0.017 9.8 3.9 45 5-49 133-179 (336)
9 d2czra1 c.52.4.1 (A:1-218) TBP 1.8 2.3E+02 0.017 9.8 -0.1 18 2-19 121-138 (218)
10 d1qpoa2 d.41.2.1 (A:2-116) Qui 1.8 2.5E+02 0.018 9.6 1.0 8 27-34 102-109 (115)
No 1
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.15 E-value=47 Score=13.37 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHCCH
Q ss_conf 92577899999999983132
Q gi|254780692|r 1 MEFLGGIIFTIICLYMMNGY 20 (72)
Q Consensus 1 meflggiiftiiclymmngy 20 (72)
+-|||||-.+|..-....-|
T Consensus 27 ~GylGGI~waILvArvCql~ 46 (150)
T d2q66a1 27 FGFPGGVAWAMLVARICQLY 46 (150)
T ss_dssp GTSCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHC
T ss_conf 23637899999999999867
No 2
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.69 E-value=57 Score=12.91 Aligned_cols=20 Identities=25% Similarity=0.610 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHCCH
Q ss_conf 92577899999999983132
Q gi|254780692|r 1 MEFLGGIIFTIICLYMMNGY 20 (72)
Q Consensus 1 meflggiiftiiclymmngy 20 (72)
+-|||||-..|..-....-|
T Consensus 27 ~GflGGI~waILvArvCql~ 46 (150)
T d1q79a1 27 LGFLGGVSWAMLVARTCQLY 46 (150)
T ss_dssp TTSBCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHC
T ss_conf 13647899999999999987
No 3
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.76 E-value=78 Score=12.20 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 778999999999831
Q gi|254780692|r 4 LGGIIFTIICLYMMN 18 (72)
Q Consensus 4 lggiiftiiclymmn 18 (72)
++|+++.+.+||++.
T Consensus 40 ~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 40 LGGTLYSLYCLGWAS 54 (58)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 998999999999985
No 4
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.00 E-value=1.5e+02 Score=10.68 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf 245566999999875102867631
Q gi|254780692|r 48 QDENLTKACKDELKNIKSNPKEKA 71 (72)
Q Consensus 48 qdenltkackdelkniksnpkeka 71 (72)
.--|+.+|.-+-|++++| |.+-|
T Consensus 54 N~~N~vkAt~~aL~~~~t-~~~va 76 (81)
T d2uube1 54 NPINIAYATMEALRQLRT-KADVE 76 (81)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-HHHHH
T ss_conf 789999999999992799-99999
No 5
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=2.30 E-value=1.9e+02 Score=10.20 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHCCHHH
Q ss_conf 773389873032455
Q gi|254780692|r 37 TRLTCEEARHTQDEN 51 (72)
Q Consensus 37 trltceearhtqden 51 (72)
+--+..|+||+|..-
T Consensus 124 a~Qt~DE~RH~q~~a 138 (512)
T d1mtyd_ 124 LAQVLDEIRHTHQCA 138 (512)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 998768999999999
No 6
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]}
Probab=2.08 E-value=2e+02 Score=10.14 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=6.0
Q ss_pred HHHHHHCCHH
Q ss_conf 9875102867
Q gi|254780692|r 59 ELKNIKSNPK 68 (72)
Q Consensus 59 elkniksnpk 68 (72)
-.+||+.||+
T Consensus 54 k~~Ni~~np~ 63 (122)
T d1flma_ 54 TEANVARDER 63 (122)
T ss_dssp HHHHHHHCCE
T ss_pred HHHHHHHCCC
T ss_conf 7888731896
No 7
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.03 E-value=2.1e+02 Score=9.97 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=13.8
Q ss_pred HHCCHHHHHHHHHHHHHHHH
Q ss_conf 30324556699999987510
Q gi|254780692|r 45 RHTQDENLTKACKDELKNIK 64 (72)
Q Consensus 45 rhtqdenltkackdelknik 64 (72)
...-|.-.|+.||+.|...-
T Consensus 52 ~tgadR~Mt~Rck~kLn~LA 71 (148)
T d3d1ma1 52 NTGADRLMTQRCKDKLNALA 71 (148)
T ss_dssp SSSGGGEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 87740356399999999999
No 8
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.88 E-value=2.3e+02 Score=9.76 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCH
Q ss_conf 7899999999983132567877888--77336887733898730324
Q gi|254780692|r 5 GGIIFTIICLYMMNGYQKEKKDIER--TRLNIERTRLTCEEARHTQD 49 (72)
Q Consensus 5 ggiiftiiclymmngyqkekkdier--trlniertrltceearhtqd 49 (72)
.|+-+..+-+|...+-.|...-+.+ ++.|+++.--.|+++....+
T Consensus 133 ~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~e 179 (336)
T d1b89a_ 133 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 179 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 67999999999986949999999860235999999999887487499
No 9
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=1.81 E-value=2.3e+02 Score=9.77 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 257789999999998313
Q gi|254780692|r 2 EFLGGIIFTIICLYMMNG 19 (72)
Q Consensus 2 eflggiiftiiclymmng 19 (72)
|+|||-...-|---|.||
T Consensus 121 EYLGgrlieHiK~~m~~G 138 (218)
T d2czra1 121 EYLGAALVNHIKNNALAG 138 (218)
T ss_dssp EECHHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 997699999987065357
No 10
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=1.78 E-value=2.5e+02 Score=9.62 Aligned_cols=8 Identities=63% Similarity=0.787 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 88877336
Q gi|254780692|r 27 IERTRLNI 34 (72)
Q Consensus 27 iertrlni 34 (72)
+||+-||+
T Consensus 102 ~ER~~LN~ 109 (115)
T d1qpoa2 102 AERTMLNL 109 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
Done!