RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780692|ref|YP_003065105.1| hypothetical protein
CLIBASIA_02895 [Candidatus Liberibacter asiaticus str. psy62]
(72 letters)
>gnl|CDD|36682 KOG1469, KOG1469, KOG1469, Predicted acyl-CoA dehydrogenase
[General function prediction only].
Length = 392
Score = 29.2 bits (65), Expect = 0.25
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 25 KDIERTRLNIERTRLTCEEARHTQDENLTKACKDELKNIK 64
DI +R+ IE+ RL +A H+ D K K E+ IK
Sbjct: 284 HDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIK 323
>gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane].
Length = 408
Score = 27.5 bits (61), Expect = 0.87
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 6 GIIFTIICLYMMNGYQKEKKD 26
G+ I+ L +MNG+QKE ++
Sbjct: 36 GVAVLIVVLSVMNGFQKELEN 56
>gnl|CDD|88607 cd04434, LanC_like, LanC-like proteins. LanC is the cyclase
enzyme of the lanthionine synthetase. Lanthionine is a
lantibiotic, a unique class of peptide antibiotics.
They are ribosomally synthesized as a precursor peptide
and then post-translationally modified to contain
thioether cross-links called lanthionines (Lans) or
methyllanthionines (MeLans), in addition to
2,3-didehydroalanine (Dha) and
(Z)-2,3-didehydrobutyrine (Dhb). These unusual amino
acids are introduced by the dehydration of serine and
threonine residues, followed by thioether formation via
addition of cysteine thiols, catalysed by LanB and LanC
or LanM. LanC, the cyclase component, is a zinc
metalloprotein, whose bound metal has been proposed to
activate the thiol substrate for nucleophilic addition.
A related domain is also present in LanM and other pro-
and eukaryotic proteins of unknown function..
Length = 343
Score = 27.1 bits (59), Expect = 1.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 4 LGGIIFTIICLYMMNGYQKEKKDIERTRLNIERTRLT 40
L GI + + L G Q+ K++ L + L
Sbjct: 52 LAGIAYALAALSKGLGDQELLKELLELLLLLVELILE 88
>gnl|CDD|32154 COG1971, COG1971, Predicted membrane protein [Function unknown].
Length = 190
Score = 25.9 bits (57), Expect = 2.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MEFLGGIIFTIICLYMM 17
E LGGII I + ++
Sbjct: 168 AEILGGIILIGIGVKIL 184
>gnl|CDD|110875 pfam01914, MarC, MarC family integral membrane protein. Integral
membrane protein family that includes the antibiotic
resistance protein MarC. These proteins may be
transporters.
Length = 203
Score = 25.3 bits (56), Expect = 3.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 1 MEFLGGIIFTIICLYMMNGYQKEKKDIERTRLNIER 36
GGI+ +I + M+ G Q ++K + + E
Sbjct: 72 FRIAGGILLFLIAIDMLFGKQSKEKTSKSEKEESED 107
>gnl|CDD|33945 COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of
terminase [DNA replication, recombination, and repair].
Length = 174
Score = 25.4 bits (55), Expect = 3.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 22 KEKKDIERTRLNIERTRLTCEEARHTQDENLTK 54
+ D+E R ER RLT +A + +N
Sbjct: 65 DLRDDVEELREARERHRLTRAQADAQELKNARD 97
>gnl|CDD|112550 pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein PdxJ.
Members of this family belong to the PdxJ family that
catalyses the condensation of
1-deoxy-d-xylulose-5-phosphate (DXP) and
1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form
pyridoxine 5'-phosphate (PNP). This reaction is
involved in de novo synthesis of pyridoxine (vitamin
B6) and pyridoxal phosphate.
Length = 239
Score = 25.0 bits (55), Expect = 4.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 42 EEARHTQD---ENLTKACKDELKNIKSNPKE 69
E+ RH QD E L + + NI+ P E
Sbjct: 45 EDRRHIQDRDVEVLKELIRTRF-NIEMAPTE 74
>gnl|CDD|34372 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 24.8 bits (54), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1 MEFLGGIIFTIICLYMMNGYQKEKKDIERTRLNIERTRLTCEEARH 46
+ FL IIF I LY++ Y +K++ + L E + + + R+
Sbjct: 73 LGFLLAIIFIFIGLYLIIKYIIKKREPQLVNLKKEPSEVNNTDFRN 118
>gnl|CDD|34524 COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein
[General function prediction only].
Length = 204
Score = 24.5 bits (53), Expect = 5.8
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 24 KKDIERTRLNIERTRLTCEEARHTQDENLTKACKDELKNIK 64
K E + ++ TR+ +E + +++L + D++ +
Sbjct: 153 VKSKEINQ-DLSETRILLKELSRSIEKDLHELLMDDVNVLD 192
>gnl|CDD|38522 KOG3312, KOG3312, KOG3312, Predicted membrane protein [Function
unknown].
Length = 186
Score = 23.8 bits (51), Expect = 9.9
Identities = 11/60 (18%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 10 TIICLYMMNGYQKEKKDIERTRLNIERTRLTCEEARHTQDENLTKACKDELKNIKSNPKE 69
T + +Y + Y++ K ++++ +E+ + EE + D++ K + + +K+N ++
Sbjct: 26 TWVLVYRTDKYKRLKAEVDKQSKKLEKKK---EENGDSNDKSKKKKIERVEEKLKNNNRD 82
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 829,133
Number of extensions: 32483
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 21
Length of query: 72
Length of database: 6,263,737
Length adjustment: 43
Effective length of query: 29
Effective length of database: 5,334,550
Effective search space: 154701950
Effective search space used: 154701950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)