RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780692|ref|YP_003065105.1| hypothetical protein
CLIBASIA_02895 [Candidatus Liberibacter asiaticus str. psy62]
         (72 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.9 bits (61), Expect = 0.62
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 16  MMNGYQKEKKD------IERTRLNIERTRLTCEEARHTQDENL 52
           + NGY  EKK+      +E      E ++ T E+ +H   + +
Sbjct: 911 LFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKV 953


>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
           ATP-binding, chaperone, nucleotide- binding,
           phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo
           sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A*
           1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A*
           3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A*
           1nga_A* ...
          Length = 404

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3   FLGGIIFT-IICLYMMNGYQKE-KKDIERTRLNIERTRLTCEEARHT 47
            LGG  F   +  ++   ++++ KKDI   +  + R R  CE A+ T
Sbjct: 248 HLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRT 294


>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
           protein folding, acetylation, ATP-binding, cell inner
           membrane; NMR {Escherichia coli}
          Length = 605

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 3   FLGGIIFT-IICLYMMNGYQKE-KKDIERTRLNIERTRLTCEEARHT 47
            LGG  F   +  Y++  ++K+   D+    L ++R +   E+A+  
Sbjct: 226 HLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIE 272


>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
           rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
           HTA426}
          Length = 509

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 3   FLGGIIFT-IICLYMMNGYQKE-KKDIERTRLNIERTRLTCEEARHT 47
            LGG  F  +I  Y++N +++E   D+ + ++ ++R +   E+A+  
Sbjct: 195 HLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKE 241


>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
           SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
          Length = 554

 Score = 24.1 bits (52), Expect = 7.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 3   FLGGIIFT-IICLYMMNGYQKE-KKDIERTRLNIERTRLTCEEARHT 47
            LGG  F   +  + +  ++++ KKDI   +  + R R  CE A+ T
Sbjct: 227 HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRT 273


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 599,902
Number of extensions: 20960
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 17
Length of query: 72
Length of database: 5,693,230
Length adjustment: 42
Effective length of query: 30
Effective length of database: 4,674,982
Effective search space: 140249460
Effective search space used: 140249460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)