HHsearch alignment for GI: 254780693 and conserved domain: COG0568

>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].

Probab=94.55  E-value=0.099  Score=31.50  Aligned_cols=50  Identities=36%  Similarity=0.444  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf             998999999999-----87999789999949998899999999999807-997899
Q gi|254780693|r  174 LTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD-AVNRIQ  223 (235)
Q Consensus       174 LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg-~~nR~q  223 (235)
T Consensus       280 Lt~rE~~Vi~~R~gl~~~~~~TLeevg~~~~vsrERvRQIE~kAl~KLr~~~~~~~  335 (342)
T COG0568         280 LTERERRVIRLRFGLDDGEPKTLEELGEEFGISRERVRQIEAKALRKLRRHPERSA  335 (342)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999955679995519999989598699999999999999987063222