HHsearch alignment for GI: 254780693 and conserved domain: COG1191

>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].

Probab=95.92  E-value=0.023  Score=36.08  Aligned_cols=45  Identities=40%  Similarity=0.400  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             49989999999998-7999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       196 ~L~EREk~Vl~l~y~eelt~kEI~~~LgISes~VSql~kkai~kLr  241 (247)
T COG1191         196 PLPEREKLVLVLRYKEELTQKEIAEVLGISESRVSRLHKKAIKKLR  241 (247)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6689999999999970157999999949149899999999999999