HHsearch alignment for GI: 254780693 and conserved domain: COG1595

>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].

Probab=97.51  E-value=0.00028  Score=49.68  Aligned_cols=45  Identities=42%  Similarity=0.504  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             49989999999998-7999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       127 ~Lp~~~R~~~~l~~~~gls~~EIA~~l~i~~~tVks~l~ra~~~l~  172 (182)
T COG1595         127 RLPPRQREAFLLRYLEGLSYEEIAEILGISVGTVKSRLHRARKKLR  172 (182)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             3999999999999985999999998959999999999999999999