HHsearch alignment for GI: 254780693 and conserved domain: COG3415
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair].
Probab=94.21 E-value=0.11 Score=31.30 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99899999999987999789999949998899999999999
Q gi|254780693|r 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 174 LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
T Consensus 7 ~~~R~~~~~~~~~~G~S~re~Ak~~gvs~sTvy~wv~r~~e 47 (138)
T COG3415 7 NDLRERVVDAVVGEGLSCREAAKRFGVSISTVYRWVRRYRE 47 (138)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 89999999999976854999999969229999999987333